Citrus Sinensis ID: 006126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660
Protein Sequence
MRRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREFSTTFGSTALE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccEEEEcccccccEEEEccccccccccccccEEEEccccccccEEcccccccccccEEcccccEEEEEEcccccccEEEEcccccEEEEEEEccccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccEEEEEEcccccEEEEEcccccccEEEEEEEccccEEEEEccccEEEEEcccccEEEEEccccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEccccEEEEEEcccccEEEEEEcccEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEEccccccccccccccccEEEcccccEEEEEccccccccEEEEEcccccEEEEEcccEEEEEEcccccEEEEcccccccEEEEEEccccEEEEEccccEEEEEEEccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccccccEEEEEcccccccccccEEEEEEccccEEEEEEcccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEccccccccccccccccEEEEEEccccccEEEEEcccccEEEEEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrreneqlsgytnatsSRAKLIDSLKLLVKENRIlqdklifpcvnnsaLSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNmndntysaKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVernpmlqdklkfpsmdKSRLLSLIKQIMDWWVPYcinvmpnannetislkdfptvsnlryassiltdkpnqegrpldassgddsndsscfndnnqsrestslpdadsAVCAKSLEKSVNLKLQLinepsecrtlllpdnsfggRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNmesqlyqpssklvmtndiaadpkdsiscfalrgshlfsasggkisifSLETFQtlatfanpppiatyfillpqdlfafgfddssilvhcpctkktkaklkghqnriTCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSfqtglvpettIVNHIQFHPDQIHLLsihegqidvyeaptlnhtsqlvpdkmdlpityatyscdgkciyvscksghvkvfdtstLELRCQINltayaqpgtislelyplviaahplepnrialgltngrvhvieplesevewgklpftdsrefsttfgstale
Flexible Loop (DISEMBL)
mrreneqlsgytnatssraklIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERnpmlqdklkfpsmDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASsiltdkpnqegRPLDASSGDDSNDSSCFNDNNQsrestslpdaDSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKtkaklkghqnRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLEsevewgklpftdsrefsttfgstale
Low Complexity Region (SEG)
MRRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLdassgddsndsscfndnnqsRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREFSTTFGSTALE
Disordered region (IsUnstruct)
*******************KLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVD******SDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYA*******************************************************SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ*****************************IA***KDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT***************
Disordered Region (DISOPRED)
****************SRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV***********************
Disordered Region (DISEMBL)
************NATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKP**************************************AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREFSTTFGSTALE
Disordered Region (DISPRO)
********SGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNL**ASSILTD*PNQEGRP***************************PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN***L*EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKxxxxxxxxxxxxxxxxxxxxxLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREFSTTFGSTALE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	660	2.2.26 [Sep-21-2011]
Q27GK7	1135	Topless-related protein 4	no	no	0.562	0.326	0.468	9e-91
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.598	0.349	0.427	2e-88
Q0WV90	1120	Topless-related protein 1	no	no	0.569	0.335	0.443	3e-88
Q9LRZ0	1131	Topless-related protein 2	no	no	0.536	0.312	0.417	1e-75
Q84JM4	1108	Topless-related protein 3	no	no	0.542	0.323	0.387	3e-73
Q06078	939	U3 small nucleolar RNA-as	yes	no	0.186	0.130	0.281	0.0002
Q0J3D9	1218	Coatomer subunit alpha-3	no	no	0.383	0.207	0.218	0.0003
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.442	0.232	0.221	0.0005
Q9AUR7	1218	Coatomer subunit alpha-2	no	no	0.387	0.210	0.208	0.0006
Q9AUR8	1218	Coatomer subunit alpha-1	no	no	0.390	0.211	0.209	0.0007

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score =  335 bits (858), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 178/380 (46%), Positives = 239/380 (62%), Gaps = 9/380 (2%)

Query: 267  ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 326
            ++ SLPD    + A   EKS   KL  I+E S+ RTL LPD     RVV+LIY++SG  +
Sbjct: 735  DNRSLPDVKPRI-ADDAEKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAI 793

Query: 327  VALTQTATHKLWKWQ-SNKQSLEEENVNMESQLYQPSSKLVMTNDI-AADPKDSISCFAL 384
            +AL + A HKLWKWQ S +  L + N N+  QL+QPSS ++MTND    + +D + CFAL
Sbjct: 794  LALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFAL 853

Query: 385  --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 440
                S++ SASGGKIS+F++ TF+T+ TF  PPP AT     PQD  + A G DDSSI +
Sbjct: 854  SKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQI 913

Query: 441  HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500
            +     + K+KLKGHQ R+T LA+S  LNVLVSSGAD+QLCVW   GW+K  SK +    
Sbjct: 914  YNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQ-IP 972

Query: 501  TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560
            +G  P       +QFH DQIH+L +H  Q+ +YEAP L +  Q +P +    +T A YSC
Sbjct: 973  SGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSC 1032

Query: 561  DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620
            D + IY +   G V +   +TL+L+C+I   +Y  P   S  +YP  +AAHP EPN+ A+
Sbjct: 1033 DSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAV 1091

Query: 621  GLTNGRVHVIEPLESEVEWG 640
            GLT+G VHVIEP   E +WG
Sbjct: 1092 GLTDGGVHVIEPPGPEGKWG 1111

Transcriptional corepressor. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score =  327 bits (839), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 250/402 (62%), Gaps = 7/402 (1%)

Query: 248  SSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD 307
            S+G     ++  +    + +S ++ D    +  +S +KS   KL  ++EPS+CR+L LP+
Sbjct: 705  SAGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPE 764

Query: 308  NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLV 366
            N    ++ RLI+++SG+ ++AL   A H LWKWQ N + +  +   ++  Q +QP+S ++
Sbjct: 765  NLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGIL 824

Query: 367  MTNDIA-ADPKDSISCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL 423
            MTND+A  +P++++ CFAL    S++ SASGGKIS+F++ TF+T+ATF  PPP AT+   
Sbjct: 825  MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884

Query: 424  LPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 481
             PQD  + A G DDS+I ++     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLC
Sbjct: 885  HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944

Query: 482  VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 541
            VW+  GW+K  SK L     G          +QFH DQ H L +HE Q+ +YE   L   
Sbjct: 945  VWNTDGWEKQRSKVL-PLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECM 1003

Query: 542  SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 601
             Q    +   PIT+AT+SCD + +Y S     V VF ++ L LRC++N +AY      + 
Sbjct: 1004 KQWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNS 1063

Query: 602  ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 643
             ++PLVIAAHP EPN  A+GL++G VH+ EPLESE +WG  P
Sbjct: 1064 NVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAP 1105

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score =  326 bits (836), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/383 (44%), Positives = 244/383 (63%), Gaps = 7/383 (1%)

Query: 267  ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 326
            +S ++ D    +  +S +KS   KL  + EPS+CR+L LP+N    ++ RLI+++SG+ +
Sbjct: 713  DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAI 772

Query: 327  VALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 384
            +AL   A H LWKWQ N + +  +   ++  Q +QP+S ++MTND+A  +P++++ CFAL
Sbjct: 773  LALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFAL 832

Query: 385  --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 440
                S++ SASGGKIS+F++ TF+T+ATF  PPP AT+    PQD  + A G DDS+I +
Sbjct: 833  SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQI 892

Query: 441  HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500
            +     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLCVW+  GW+K  SK L   Q
Sbjct: 893  YNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQ 952

Query: 501  TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560
             G    +     +QFH DQ+H L +HE Q+ +YE   L    Q    +   PIT+AT+SC
Sbjct: 953  -GRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSC 1011

Query: 561  DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620
            D + IY S     + VF ++ L LRC++N +AY      +  ++PLVIAAHP E N  A+
Sbjct: 1012 DSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAV 1071

Query: 621  GLTNGRVHVIEPLESEVEWGKLP 643
            GL++G VH+ EPLESE +WG  P
Sbjct: 1072 GLSDGGVHIFEPLESEGKWGVAP 1094

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score =  285 bits (728), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 226/369 (61%), Gaps = 15/369 (4%)

Query: 282  SLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQTATHKLWKW 340
            S++KS  L+L  I +P++CR + +PD+     +V RL+Y++SG  ++AL      +LWKW
Sbjct: 735  SVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKW 794

Query: 341  QSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSHLFSASGGKI 397
              N+Q+   +   ++  Q +QP+S L+M ND+  +P+ S+ C AL    S++ SA GGK+
Sbjct: 795  IRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCIALSKNDSYVMSACGGKV 854

Query: 398  SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 455
            S+F++ TF+ + TF  PPP +T+    PQD  + A G +DSSI ++     + K KLKGH
Sbjct: 855  SLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGH 914

Query: 456  QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN--HI 513
            Q  IT LA+S +LN+LVSSGADAQL  W A  W+K  S  +      L P    V    +
Sbjct: 915  QKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQ-----LPPGKAPVGDTRV 969

Query: 514  QFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSG 572
            QFH DQI LL  HE Q+ +Y+A  +    + VP + +  PIT A+YSC+ + +Y S   G
Sbjct: 970  QFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASFADG 1029

Query: 573  HVKVFDTSTLELRCQINLTAY-AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631
            ++ VFD  +L LRC+I  +AY  QP   S  ++P VI AHP EPN++A+GL++G V VIE
Sbjct: 1030 NIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIE 1089

Query: 632  PLESEVEWG 640
            P E    WG
Sbjct: 1090 PSELSRRWG 1098

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score =  276 bits (706), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 232/377 (61%), Gaps = 19/377 (5%)

Query: 282  SLEKSVNLKLQLINEPSECRTLLLPDNSFGG-RVVRLIYSHSGDFLVALTQTATHKLWKW 340
            S +K  + +L  I +PS+C    LPD +    +VV+L+Y++SG  ++AL      +LWKW
Sbjct: 723  STDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGSNGIQRLWKW 782

Query: 341  QSNKQSLE-EENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFAL--RGSHLFSASGGK 396
              N+Q+   +    +  Q +QP+S L+MTND++  + +++  C AL    S++ SA+GGK
Sbjct: 783  VPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIALSKNDSYVMSAAGGK 842

Query: 397  ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG 454
            +S+F++ TF+ + TF  PPP +T+    PQD  + A G +DS+I ++     + K+KLKG
Sbjct: 843  VSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKSKLKG 902

Query: 455  HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN--- 511
            HQ RIT LA+S +LN+LVSSGADAQ+C W    W+K  S  +       +P     N   
Sbjct: 903  HQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQ------MPAGKAANGDT 956

Query: 512  HIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK 570
             +QFH DQ+ +L +HE Q+ V++A  +    Q +P D +  PI+ A Y+C+ + IY + +
Sbjct: 957  RVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTFR 1016

Query: 571  SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 630
             G++ VFD  +L LRC+I+ +AY   G   L   PLV+AAHP +PN+ A+GL +G V ++
Sbjct: 1017 DGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLVVAAHPQDPNQFAVGLNDGSVKMM 1074

Query: 631  EPLESEVEWGKLPFTDS 647
            EP E E +WG +P +++
Sbjct: 1075 EPTEGEGKWGMIPPSEA 1091

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP21 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 12/135 (8%)

Query: 353 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQT---LA 409
           NM+S + +   KL          K +++  +L G +    S G   I     F     L 
Sbjct: 488 NMQSGILRKKYKL---------HKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLG 538

Query: 410 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 469
                 PI         DLFA   DD SI+V    T++   +L GH NRIT   +S    
Sbjct: 539 KLKLDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGR 598

Query: 470 VLVSSGADAQLCVWD 484
            +VS+  D+ +  WD
Sbjct: 599 WIVSASLDSTIRTWD 613

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 123/320 (38%), Gaps = 67/320 (20%)

Query: 319 YSHSGDFLVALTQTATHKLWKWQSNK--QSLEEENVNMESQLYQPSSKLVMTN------- 369
           + H   ++V+ +   T ++W WQS      L   N  +    + P   LV++        
Sbjct: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160

Query: 370 --DIAA------DPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 421
             DI A       P D I       + LF      +  + LE       +A+  P     
Sbjct: 161 VWDIGALRKKTVSPADDILRLTQMNTDLFGGVDAVVK-YVLEGHDRGVNWASFHPT---- 215

Query: 422 ILLPQDLFAFGFDDSSI-LVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQ 479
             LP  L   G DD  + L     TK  +   L+GH N ++C+ +    +++VS+  D  
Sbjct: 216 --LP--LIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS 271

Query: 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF-----HPDQIHLLSIHEGQIDVYE 534
           + VWDA            + +TG+  +T    H +F     HP+   L + H+  + V++
Sbjct: 272 IRVWDA------------TKRTGI--QTFRREHDRFWILAAHPEMNLLAAGHDNGMIVFK 317

Query: 535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 594
                           L      +S  G  ++   K   ++ F+ ST +   ++ L    
Sbjct: 318 ----------------LERERPAFSVSGDTVFY-VKDRFLRFFEYSTQK---EVQLAPIR 357

Query: 595 QPGTISLELYPLVIAAHPLE 614
           +PG++SL   P  ++  P E
Sbjct: 358 RPGSVSLNQSPRTLSYSPTE 377

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 47.0 bits (110), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%)

Query: 272  PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVAL 329
            PD  +  C  SL++SV L          CRT       +G     L  + S D   L + 
Sbjct: 904  PDGQTLACV-SLDQSVRLW--------NCRTGQCLKAWYGNTDWALPVAFSPDRQILASG 954

Query: 330  TQTATHKLWKWQSNK--QSLEEENVNMESQLYQPSSKLVMTNDIAADPK----DSISCFA 383
            +   T KLW WQ+ K   SLE     +    + P S+ + +    +  +     +  CF 
Sbjct: 955  SNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQ 1014

Query: 384  LRGSH-------LFSASGGKIS---------IFSLETFQTLATFANPPPIATYFILLPQD 427
            +   H       +F   G  I+         ++++ T Q L T +            P  
Sbjct: 1015 ILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDG 1074

Query: 428  -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 486
             L A    D S+ +   CT +    L+GH NR+    +S +  ++ +   D  + +WD  
Sbjct: 1075 QLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWD-- 1132

Query: 487  GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV 545
             W++   K L +    L   T  V  I F PD   L S  H+  + +++  T      + 
Sbjct: 1133 -WQQ--GKCLKT----LTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNT-GKCHHIC 1184

Query: 546  PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583
                 L ++   +S DG+ +    +   V++++  T E
Sbjct: 1185 IGHTHL-VSSVAFSPDGEVVASGSQDQTVRIWNVKTGE 1221

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 124/317 (39%), Gaps = 61/317 (19%)

Query: 319 YSHSGDFLVALTQTATHKLWKWQSNK--QSLEEENVNMESQLYQPSSKLVMTN------- 369
           + H   ++V+ +   T ++W WQS      L   N  +    + P   LV++        
Sbjct: 101 FHHECPWIVSASDDQTIRIWNWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160

Query: 370 --DIAA------DPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 421
             DI+A       P D I       + LF      +  + LE       +A+  P     
Sbjct: 161 VWDISALRKKSVSPADDILRLTQMNTDLFGGVDAVVK-YVLEGHDRGVNWASFHPT---- 215

Query: 422 ILLPQDLFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLSLNVLVSSGAD 477
             LP  L   G DD  + +       TKA     L+GH N ++C+ +    +++VS+  D
Sbjct: 216 --LP--LIVSGADDRQVKIWR--MNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269

Query: 478 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 537
             + +WDA                    + T +   +   D+  +LS H  ++++  A  
Sbjct: 270 KSIRIWDAT-------------------KRTGIQTFRREHDRFWILSAHP-EMNLLAA-- 307

Query: 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 597
             H S ++  K++       +S  G  ++   K   ++ F+ +T +   ++ L    +PG
Sbjct: 308 -GHDSGMIVFKLER--ERPAFSVSGDTVFY-VKDRFLRFFEFTTQK---EVQLAPIRRPG 360

Query: 598 TISLELYPLVIAAHPLE 614
           ++SL   P  ++  P E
Sbjct: 361 SVSLNQSPKTLSYSPTE 377

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 123/315 (39%), Gaps = 57/315 (18%)

Query: 319 YSHSGDFLVALTQTATHKLWKWQSNK--QSLEEENVNMESQLYQPSSKLVMTN------- 369
           + H   ++V+ +   T ++W WQS      L   N  +    + P   LV++        
Sbjct: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160

Query: 370 --DIAA------DPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 421
             DI A       P D I       + LF      +  + LE       +A+  P     
Sbjct: 161 VWDIGALRKKTVSPADDILRLTQMNTDLFGGVDAVVK-YVLEGHDRGVNWASFHPT---- 215

Query: 422 ILLPQDLFAFGFDDSSI-LVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQ 479
             LP  L   G DD  + L     TK  +   L+GH N ++C+ +    +++VS+  D  
Sbjct: 216 --LP--LIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS 271

Query: 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 539
           + +WDA                    + T +   +   D+  +LS H  ++++  A    
Sbjct: 272 IRIWDAT-------------------KRTGIQTFRREHDRFWILSAHP-EMNLLAA---G 308

Query: 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 599
           H S ++  K++       +S  G  ++   K   ++ F+ +T +   ++ L    +PG++
Sbjct: 309 HDSGMIVFKLER--ERPAFSVSGDTVFY-VKDRFLRFFEFTTQK---EVQLAPIRRPGSV 362

Query: 600 SLELYPLVIAAHPLE 614
           SL   P  ++  P E
Sbjct: 363 SLNQSPKTLSYSPTE 377

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	660
297821939	749	hypothetical protein ARALYDRAFT_901180 [	0.890	0.785	0.442	1e-142
20197750	730	hypothetical protein [Arabidopsis thalia	0.865	0.782	0.411	1e-120
224142595	1126	predicted protein [Populus trichocarpa]	0.569	0.333	0.522	1e-104
224087108	1132	predicted protein [Populus trichocarpa]	0.651	0.379	0.474	1e-103
357478183	1132	WD repeat-containing protein [Medicago t	0.577	0.336	0.510	1e-101
255572487	1134	WD-repeat protein, putative [Ricinus com	0.571	0.332	0.518	1e-100
356562983	1134	PREDICTED: topless-related protein 4-lik	0.593	0.345	0.490	1e-100
356546114	1232	PREDICTED: topless-related protein 4-lik	0.595	0.318	0.492	1e-100
449443059	1134	PREDICTED: topless-related protein 4-lik	0.566	0.329	0.508	1e-100
449517894	623	PREDICTED: topless-related protein 4-lik	0.566	0.600	0.508	1e-99

>gi|297821939|ref|XP_002878852.1| hypothetical protein ARALYDRAFT_901180 [Arabidopsis lyrata subsp. lyrata] gi|297324691|gb|EFH55111.1| hypothetical protein ARALYDRAFT_901180 [Arabidopsis lyrata subsp. lyrata]

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/647 (44%), Positives = 389/647 (60%), Gaps = 59/647 (9%)

Query: 17  SRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKET---KEELIYLIH 73
            RAKL   L  L + N  L DKL FP +N SAL SLI LICP+        KE+LI LI 
Sbjct: 143 GRAKLCVDLHKLAESNPCLCDKLEFPSLNKSALLSLISLICPNCSGRNGGLKEDLICLIL 202

Query: 74  QFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMF 133
           QFL E ++K TLHKLEQET+VFF++NY  E +  GE+  AE+YL AFT+  DN YS  MF
Sbjct: 203 QFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKLGEYGKAEEYLGAFTDSKDNKYSKAMF 262

Query: 134 SQIQRQKYLEAVDRQQKLPS----DFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRL 189
            +IQ+   L++ + +   PS    + + +  L     +L ++NP+L+DKLKFPSM+KSRL
Sbjct: 263 LEIQKLTCLQSTEWEVATPSGSLDNMSPKIKLHASVAMLAKKNPVLKDKLKFPSMEKSRL 322

Query: 190 LSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASS 249
           L+L+KQ MDWW            N + SL++ P VS L      L  K N+ G+      
Sbjct: 323 LTLMKQTMDWWTS-------RTCNNSSSLENVPVVSYLCGTPFSLKKKFNKTGQR----- 370

Query: 250 GDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS 309
                                             +K VN K   IN+PS+C  L+LPD  
Sbjct: 371 ----------------------------------KKVVNYKPNEINDPSQCNALVLPDYF 396

Query: 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN 369
               + RL YS SGD+++AL + ATHKLW W S++    +ENV  + +L+QP S   M N
Sbjct: 397 SEEMIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFSKENVFPKPRLHQPQSGKTMKN 456

Query: 370 DIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLF 429
           ++AA  ++S SCFA++GS+LFS SGGKI++F L++F+ +A F +P P+ATYFI +P DL 
Sbjct: 457 EMAASVQNSTSCFAIKGSYLFSTSGGKIAVFDLKSFEKVAAFGSPTPMATYFIFIPGDLL 516

Query: 430 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 489
           A G DD SI +HC  ++K K KL+GH  +ITCLA+S   NVLVSS +D +LC+W    W 
Sbjct: 517 AVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWV 576

Query: 490 KLCSK-FLHSFQTGLVPE-TTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD 547
           KL SK     F T    E T++V HIQF P QI LL +HEG I +YEA TL+   Q +PD
Sbjct: 577 KLTSKNSTRKFCTRSNHESTSLVTHIQFDPYQIELLVVHEGWIGIYEARTLDCRLQWIPD 636

Query: 548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG--TISLELYP 605
           + D  IT ATYS DG+ IY   +SG +K+ D+ T    C+IN+T+  QP    I LE+YP
Sbjct: 637 ESDTSITSATYSSDGEIIYAGFRSGFIKIVDSRTFMTVCRINMTSLTQPSPNNIRLEVYP 696

Query: 606 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK-LPFTDSREFS 651
            V+AAHP  P++I+ GL+NG+V V++PL S   WG+  P  D+ ++S
Sbjct: 697 TVVAAHPSHPSQISAGLSNGKVIVLQPLWSG-GWGEAAPLEDNGDYS 742

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20197750|gb|AAD20702.2| hypothetical protein [Arabidopsis thaliana]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 273/664 (41%), Positives = 377/664 (56%), Gaps = 93/664 (14%)

Query: 17  SRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEKET---KEELIYLIH 73
            RAKL   L  L + N  L+ KL FP +N SAL +LI L+CP+  +     KE+LI LI 
Sbjct: 124 GRAKLCVDLHKLAESNPSLRGKLDFPSLNKSALLALISLLCPNCSRRKGGLKEDLICLIL 183

Query: 74  QFLNEEEFKETLHKLEQETRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMF 133
           QFL E ++K TLHKLEQET+VFF++NY  E +  GE+  AE+YL AFTN  DN YS  MF
Sbjct: 184 QFLYEAKYKNTLHKLEQETKVFFNLNYLAEVMKLGEYGKAEEYLGAFTNWEDNKYSKAMF 243

Query: 134 SQIQRQKYLEAVDRQQKLPS----DFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRL 189
            ++Q+   L++ + +   PS    + + +  L     +L ++NP+L+D+LKFPSM+KSRL
Sbjct: 244 LELQKLICLQSTEWEVATPSGSLDNMSLKIKLHASVAMLAKKNPVLKDELKFPSMEKSRL 303

Query: 190 LSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSIL----------TDKPN 239
           L+L+KQ MDWW   C        N T SL++ P VS L    S +            KPN
Sbjct: 304 LTLVKQTMDWWT--C--------NNTSSLENVPVVSYLCGTPSSMKFFFKKTVPRKKKPN 353

Query: 240 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE 299
           +   P           S C         +  LPD  S       E+ +    +L   PS 
Sbjct: 354 EIKDP-----------SQC--------NALVLPDCFS-------EEKI---ARLTYSPSG 384

Query: 300 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-------SLEEENV 352
              L L +++                        THKLW W S++         + +ENV
Sbjct: 385 DYILALAEDA------------------------THKLWTWSSSQNEFCKYTPKILKENV 420

Query: 353 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA 412
             + +L+QP S   M N++A   + S SCFA++GS+LFS SGGKI++F L+ F+ +A+F 
Sbjct: 421 YPKPRLHQPQSGKTMENEMATSVQKSTSCFAVKGSYLFSTSGGKIAVFDLKNFEKVASFG 480

Query: 413 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 472
           +P P+ATYFI +P DL A G DD SI +HC  ++K K KL+GH  +ITCLA+S   NVLV
Sbjct: 481 SPTPMATYFIFIPGDLLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLV 540

Query: 473 SSGADAQLCVWDAVGWKKLCSK-FLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 530
           SS +D +LC+W    W KL SK     F     +  T++V HIQF P QI LL +H+G I
Sbjct: 541 SSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHDGWI 600

Query: 531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590
            +YE  TL+   Q +PD  D  IT ATYS DG+ IYV  + G +K+ D+ T    CQINL
Sbjct: 601 GLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQINL 660

Query: 591 TAYAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK-LPFTDS 647
           T++ Q  T  ISLE+YP V+AAHP  PN+I+ GL+NG+V V++PL S   WG+  P  D+
Sbjct: 661 TSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSG-GWGEAAPLEDN 719

Query: 648 REFS 651
            ++S
Sbjct: 720 GDYS 723

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142595|ref|XP_002324641.1| predicted protein [Populus trichocarpa] gi|222866075|gb|EEF03206.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/383 (52%), Positives = 260/383 (67%), Gaps = 7/383 (1%)

Query: 267  ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 326
            ++ SL D    +  +S+EKS   KL  INEPS+CR+L LPD+    RV RLI+++SG  +
Sbjct: 723  DNRSLVDVKPKIQDESIEKSRIWKLTEINEPSQCRSLRLPDSLTAMRVSRLIFTNSGVAI 782

Query: 327  VALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 384
            +AL   A HKLWKWQ N ++L  +   ++  QL+QPSS ++MTNDI+  +P+D++ CFAL
Sbjct: 783  LALASNAVHKLWKWQRNDRNLPGKATASVPPQLWQPSSGILMTNDISDTNPEDAVPCFAL 842

Query: 385  --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 440
                S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +DSSI +
Sbjct: 843  SKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSSIQI 902

Query: 441  HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500
            +     + K KLKGHQ RIT LA+S SLNVLVSSGAD+QLCVW    W+K  SKFL    
Sbjct: 903  YNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWEKQASKFLQ-IP 961

Query: 501  TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560
            TG V  +     +QFH DQIHLL++HE QI ++EAP L    Q  P +   PIT+ATYSC
Sbjct: 962  TGRVASSLADTRVQFHLDQIHLLAVHETQIAIFEAPKLECLKQWFPREASGPITHATYSC 1021

Query: 561  DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620
            D + IYVS + G V V   STL LRC+IN TAY  P   SL +YPLVIAAHP EP++ AL
Sbjct: 1022 DSQSIYVSFEDGSVGVLTASTLRLRCRINSTAYLPPNPSSLRVYPLVIAAHPSEPDQFAL 1081

Query: 621  GLTNGRVHVIEPLESEVEWGKLP 643
            GLT+G +HV+EPLESE +WG  P
Sbjct: 1082 GLTDGGIHVLEPLESEGKWGTSP 1104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087108|ref|XP_002308068.1| predicted protein [Populus trichocarpa] gi|222854044|gb|EEE91591.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/447 (47%), Positives = 283/447 (63%), Gaps = 17/447 (3%)

Query: 211  ANNETISLKDFPTVSNLRY------ASSILTDKPNQEGRPLDASSGDDSNDSSCFNDN-- 262
            AN++ I L    TV N  +      ++S++   P     P +A  G   +D +       
Sbjct: 667  ANSDGIRL--LRTVENRTFDASRAASASVVKPPPIGNFSPANAPVGTSGDDQAALAAPMV 724

Query: 263  NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322
              + +S SL D    +  +S+EKS   KL  INEPS+CR+L LPD+    RV RLIY++S
Sbjct: 725  GMNSDSRSLVDVKPKIQDESVEKSRIWKLTEINEPSQCRSLRLPDSLTSMRVSRLIYTNS 784

Query: 323  GDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSIS 380
            G  ++AL   A HKLWKWQ N ++   + N ++  QL+QPSS ++MTNDI+  +P+D++ 
Sbjct: 785  GVAILALASNAVHKLWKWQRNDRNPSGKANASVPPQLWQPSSGILMTNDISDTNPEDAVP 844

Query: 381  CFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS 436
            CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +DS
Sbjct: 845  CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNIIAIGMEDS 904

Query: 437  SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 496
            SI ++     + K KLKGHQ RIT LA+S SLNVLVSSGAD+QLCVW    W+K  SKFL
Sbjct: 905  SIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWEKQASKFL 964

Query: 497  HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 556
                +G V  +     +QFH DQIHLL++HE QI ++EAP L    Q    +   PIT+A
Sbjct: 965  Q-IPSGRVAPSLADTRVQFHLDQIHLLAVHETQIAIFEAPKLECQKQWFRQEASGPITHA 1023

Query: 557  TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616
            TYSCD + I+VS + G V V   STL LRC+I+ TAY  P   SL +YPLVIAAHP EP+
Sbjct: 1024 TYSCDSQSIFVSFEDGSVVVLTASTLRLRCRISSTAYLPPNPSSLRVYPLVIAAHPSEPD 1083

Query: 617  RIALGLTNGRVHVIEPLESEVEWGKLP 643
            + ALGLT+G VHV+EPLESE +WG  P
Sbjct: 1084 QFALGLTDGGVHVLEPLESEGKWGTSP 1110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478183|ref|XP_003609377.1| WD repeat-containing protein [Medicago truncatula] gi|355510432|gb|AES91574.1| WD repeat-containing protein [Medicago truncatula]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/392 (51%), Positives = 257/392 (65%), Gaps = 11/392 (2%)

Query: 262  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321
            NN SR   SL D    +  +++EKS   KL  INE S+CR+L LPD     RV RLIY++
Sbjct: 728  NNDSR---SLADVKPRIVDEAVEKSRIWKLTEINEQSQCRSLKLPDGLSSMRVSRLIYTN 784

Query: 322  SGDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 379
             G  ++AL   A HKLWKWQ N + +  +   +++ QL+QPSS ++MTN+I   +P+D++
Sbjct: 785  QGVAILALAANAVHKLWKWQKNDRNTSGKATASLQPQLWQPSSGILMTNEIGDTNPEDAV 844

Query: 380  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 435
            SCFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G DD
Sbjct: 845  SCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDD 904

Query: 436  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495
            SSI ++     + K KLKGHQ RIT LA+S  LN+LVSSGAD+QLCVW   GW+K  +KF
Sbjct: 905  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNILVSSGADSQLCVWSTDGWEKQTNKF 964

Query: 496  LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 555
            L     G          +QFH DQ HLL++HE QI +YEAP L    Q VP +   PIT+
Sbjct: 965  LQ-MPNGRALAPLADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQWVPREASGPITH 1023

Query: 556  ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615
            ATYSCD + IYVS + G + V   STL LRC+IN TAY  P   SL +YPLVIAAHP E 
Sbjct: 1024 ATYSCDSQSIYVSFEDGSIGVLTASTLRLRCRINQTAYLNPNP-SLRVYPLVIAAHPSES 1082

Query: 616  NRIALGLTNGRVHVIEPLESEVEWGKLPFTDS 647
            N+ ALGLT+G VHV+EPLESE  WG  P T++
Sbjct: 1083 NQFALGLTDGGVHVLEPLESEGRWGSPPPTEN 1114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572487|ref|XP_002527178.1| WD-repeat protein, putative [Ricinus communis] gi|223533443|gb|EEF35191.1| WD-repeat protein, putative [Ricinus communis]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/388 (51%), Positives = 255/388 (65%), Gaps = 11/388 (2%)

Query: 262  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321
            NN SR    L D    +  +  E S   KL  +NEPS+CR+L LPDN    RV RLIY++
Sbjct: 730  NNDSR---ILADVKPRIADEPTENSRIWKLTEVNEPSQCRSLRLPDNLTAMRVSRLIYTN 786

Query: 322  SGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 379
            SG  L+ L   A HKLWKWQ N ++L  +   ++  QL+QPSS ++MTNDI+  +P+DS+
Sbjct: 787  SGLSLLGLASNAVHKLWKWQRNDRNLSGKATASVVPQLWQPSSGILMTNDISDTNPEDSV 846

Query: 380  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 435
             CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 847  PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906

Query: 436  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495
            SSI ++     + K KLKGHQ RIT LA+S SLNVLVSSGADAQLCVW   GW+K  SKF
Sbjct: 907  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADAQLCVWSTDGWEKQASKF 966

Query: 496  LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 555
            L     G    + +   +QFH DQ HLL++HE +I +YEAP L    Q  P +   PIT+
Sbjct: 967  LQ-IPPGRGSASLVDTRVQFHLDQTHLLAVHESRIAIYEAPKLECVKQWFPWESSGPITH 1025

Query: 556  ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615
            ATYSCD + IYVS +   V V  +STL LRC+IN TAY  P   SL +YPLVIAAH  EP
Sbjct: 1026 ATYSCDSQTIYVSFEDASVGVLTSSTLALRCRINPTAYLPPNP-SLRVYPLVIAAHTSEP 1084

Query: 616  NRIALGLTNGRVHVIEPLESEVEWGKLP 643
            N+ ALGLT+G V+V+EPLESE +WG  P
Sbjct: 1085 NQFALGLTDGGVYVLEPLESEGKWGTSP 1112

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562983|ref|XP_003549747.1| PREDICTED: topless-related protein 4-like [Glycine max]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/404 (49%), Positives = 265/404 (65%), Gaps = 12/404 (2%)

Query: 262  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321
            NN +R   +L D    +  +S+EKS   KL  INEPS+CR+L LPD+    RV RLIY++
Sbjct: 731  NNDTR---NLADVKPRIVDESVEKSRIWKLTEINEPSQCRSLKLPDSLSSMRVSRLIYTN 787

Query: 322  SGDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 379
             G  ++AL   A HKLWKWQ N + +  +   +++ QL+QPSS ++MTNDI+  +P+D++
Sbjct: 788  QGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDISDTNPEDAV 847

Query: 380  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 435
            SCFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 848  SCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 907

Query: 436  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495
            SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  SKF
Sbjct: 908  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDGWEKQASKF 967

Query: 496  LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 555
            L    +G  P       +QFH DQ HLL++HE QI +YEAP L    Q  P + + PIT+
Sbjct: 968  LQ-MPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKLECIKQFSPREAN-PITH 1025

Query: 556  ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615
            ATYSCD + IYVS + G + +     L LRC+IN +AY  P   SL ++PLVIAAHP EP
Sbjct: 1026 ATYSCDSQSIYVSFEDGSIGILTVPALRLRCRINQSAYLHPNP-SLRVHPLVIAAHPSEP 1084

Query: 616  NRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREFSTTFGSTAL 659
            N+ ALGLT+G VHV+EPLE+E +WG  P  ++    +T    A+
Sbjct: 1085 NQFALGLTDGGVHVLEPLEAEGKWGTPPPNENGAGPSTASGAAV 1128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546114|ref|XP_003541476.1| PREDICTED: topless-related protein 4-like [Glycine max]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/406 (49%), Positives = 267/406 (65%), Gaps = 13/406 (3%)

Query: 262  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321
            NN +R   +L D    +  +++EKS   KL  INEPS+CR+L LPD+    RV RLIY++
Sbjct: 829  NNDTR---NLADVKPRIVDEAVEKSRIWKLTEINEPSQCRSLKLPDSLSSMRVSRLIYTN 885

Query: 322  SGDFLVALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 379
             G  ++AL   A HKLWKWQ N + +  +   +++ QL+QPSS ++MTNDI+  +P+D++
Sbjct: 886  QGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDISDTNPEDAV 945

Query: 380  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 435
            SCFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 946  SCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 1005

Query: 436  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495
            SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  SKF
Sbjct: 1006 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDGWEKQASKF 1065

Query: 496  LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 555
            L    +G  P       +QFH DQ HLL++HE QI +YEAP L    Q  P + + PIT+
Sbjct: 1066 LQ-MPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKLECIKQFSPREAN-PITH 1123

Query: 556  ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615
            ATYSCD + IYVS + G + +     L LRC+IN +AY  P   SL ++PLVIAAHP EP
Sbjct: 1124 ATYSCDSQSIYVSFEDGSIGILTVPALRLRCRINQSAYLHPNP-SLRVHPLVIAAHPSEP 1182

Query: 616  NRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREF-STTFGSTALE 660
            N+ ALGLT+G VHV+EPLE+E +WG  P  ++    STT G+   E
Sbjct: 1183 NQFALGLTDGGVHVLEPLEAEGKWGTPPPNENGAGPSTTSGAAVSE 1228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443059|ref|XP_004139298.1| PREDICTED: topless-related protein 4-like [Cucumis sativus]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/391 (50%), Positives = 260/391 (66%), Gaps = 17/391 (4%)

Query: 262  NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321
            NN SR   SL D    +  +S++KS   KL  INEP++CR+L LPDN    RV RLIY++
Sbjct: 730  NNDSR---SLADVKPRIADESVDKSRIWKLTEINEPTQCRSLRLPDNLTASRVSRLIYTN 786

Query: 322  SGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 379
            SG  ++AL   A HKLW+WQ N +++  +   ++  QL+QP S ++MTNDI+  +P+D++
Sbjct: 787  SGLAILALASNAVHKLWRWQRNDRNVTVKATASVAPQLWQPPSGILMTNDISDTNPEDAV 846

Query: 380  SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 435
             CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 847  PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906

Query: 436  SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495
            SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  +KF
Sbjct: 907  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVSSGADSQLCVWSTDGWEKQVNKF 966

Query: 496  LH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 552
            L    S  T  + +T     +QFH DQIHLL+IHE QI +YEAP L    Q VP +   P
Sbjct: 967  LQVPSSRTTAPLADT----RVQFHIDQIHLLAIHETQIAIYEAPKLECLKQWVPREASGP 1022

Query: 553  ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612
            IT+AT+SCD + IYVS + G V V   STL LRC+IN  AY      SL ++PLVIAAHP
Sbjct: 1023 ITHATFSCDSQSIYVSFEDGSVGVLTASTLRLRCRINPNAYLS-SNPSLRVHPLVIAAHP 1081

Query: 613  LEPNRIALGLTNGRVHVIEPLESEVEWGKLP 643
             EPN+ ALGL++G VHV+EP ESE +WG  P
Sbjct: 1082 SEPNQFALGLSDGGVHVLEPSESEGKWGTSP 1112

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517894|ref|XP_004165979.1| PREDICTED: topless-related protein 4-like [Cucumis sativus]

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 199/391 (50%), Positives = 260/391 (66%), Gaps = 17/391 (4%)

Query: 262 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321
           NN SR   SL D    +  +S++KS   KL  INEP++CR+L LPDN    RV RLIY++
Sbjct: 219 NNDSR---SLADVKPRIADESVDKSRIWKLTEINEPTQCRSLRLPDNLTASRVSRLIYTN 275

Query: 322 SGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSI 379
           SG  ++AL   A HKLW+WQ N +++  +   ++  QL+QP S ++MTNDI+  +P+D++
Sbjct: 276 SGLAILALASNAVHKLWRWQRNDRNVTVKATASVAPQLWQPPSGILMTNDISDTNPEDAV 335

Query: 380 SCFAL--RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 435
            CFAL    S++ SASGGKIS+F++ TF+T+ TF  PPP AT+    PQD  + A G +D
Sbjct: 336 PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 395

Query: 436 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495
           SSI ++     + K KLKGHQ RIT LA+S  LNVLVSSGAD+QLCVW   GW+K  +KF
Sbjct: 396 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVSSGADSQLCVWSTDGWEKQVNKF 455

Query: 496 LH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 552
           L    S  T  + +T     +QFH DQIHLL+IHE QI +YEAP L    Q VP +   P
Sbjct: 456 LQVPSSRTTAPLADT----RVQFHIDQIHLLAIHETQIAIYEAPKLECLKQWVPREASGP 511

Query: 553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612
           IT+AT+SCD + IYVS + G V V   STL LRC+IN  AY      SL ++PLVIAAHP
Sbjct: 512 ITHATFSCDSQSIYVSFEDGSVGVLTASTLRLRCRINPNAYLS-SNPSLRVHPLVIAAHP 570

Query: 613 LEPNRIALGLTNGRVHVIEPLESEVEWGKLP 643
            EPN+ ALGL++G VHV+EP ESE +WG  P
Sbjct: 571 SEPNQFALGLSDGGVHVLEPSESEGKWGTSP 601

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	660
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.540	0.482	0.479	1.8e-133
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.569	0.332	0.446	6.3e-110
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.569	0.335	0.443	6.3e-110
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.539	0.314	0.416	4.1e-99
WB|WBGene00004895	510	smu-1 [Caenorhabditis elegans	0.228	0.296	0.228	1.1e-05
FB|FBgn0027524	331	CG3909 [Drosophila melanogaste	0.190	0.380	0.313	4.4e-05
GENEDB_PFALCIPARUM|PFC0365w	532	PFC0365w "conserved protein, p	0.286	0.355	0.258	5.1e-05
UNIPROTKB|O77325	532	PFC0365w "PRP19-like protein,	0.286	0.355	0.258	5.1e-05
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.325	0.495	0.264	7.3e-05
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.216	0.396	0.253	0.00052

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
 Identities = 174/363 (47%), Positives = 240/363 (66%)

Query:   294 INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 353
             I +PS+C  L+LPD     ++ RL YS SGD+++AL + ATHKLW W S++    +ENV 
Sbjct:   372 IKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKENVY 431

Query:   354 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFAN 413
              + +L+QP S   M N++A   + S SCFA++GS+LFS SGGKI++F L+ F+ +A+F +
Sbjct:   432 PKPRLHQPQSGKTMENEMATSVQKSTSCFAVKGSYLFSTSGGKIAVFDLKNFEKVASFGS 491

Query:   414 PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 473
             P P+ATYFI +P DL A G DD SI +HC  ++K K KL+GH  +ITCLA+S   NVLVS
Sbjct:   492 PTPMATYFIFIPGDLLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLVS 551

Query:   474 SGADAQLCVWDAVGWKKLCSK-FLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 531
             S +D +LC+W    W KL SK     F     +  T++V HIQF P QI LL +H+G I 
Sbjct:   552 SDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHDGWIG 611

Query:   532 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 591
             +YE  TL+   Q +PD  D  IT ATYS DG+ IYV  + G +K+ D+ T    CQINLT
Sbjct:   612 LYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQINLT 671

Query:   592 AYAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL-PFTDSR 648
             ++ Q  T  ISLE+YP V+AAHP  PN+I+ GL+NG+V V++PL S   WG+  P  D+ 
Sbjct:   672 SFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSG-GWGEAAPLEDNG 730

Query:   649 EFS 651
             ++S
Sbjct:   731 DYS 733

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 171/383 (44%), Positives = 245/383 (63%)

Query:   267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 326
             +S ++ D    +  +S +KS   KL  ++EPS+CR+L LP+N    ++ RLI+++SG+ +
Sbjct:   724 DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAI 783

Query:   327 VALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 384
             +AL   A H LWKWQ N+++   +   ++  Q +QP+S ++MTND+A  +P++++ CFAL
Sbjct:   784 LALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFAL 843

Query:   385 --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 440
                 S++ SASGGKIS+F++ TF+T+ATF  PPP AT+    PQD  + A G DDS+I +
Sbjct:   844 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQI 903

Query:   441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500
             +     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLCVW+  GW+K  SK L   Q
Sbjct:   904 YNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQ 963

Query:   501 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560
              G          +QFH DQ H L +HE Q+ +YE   L    Q    +   PIT+AT+SC
Sbjct:   964 -GRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSC 1022

Query:   561 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620
             D + +Y S     V VF ++ L LRC++N +AY      +  ++PLVIAAHP EPN  A+
Sbjct:  1023 DSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAV 1082

Query:   621 GLTNGRVHVIEPLESEVEWGKLP 643
             GL++G VH+ EPLESE +WG  P
Sbjct:  1083 GLSDGGVHIFEPLESEGKWGVAP 1105

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 170/383 (44%), Positives = 244/383 (63%)

Query:   267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL 326
             +S ++ D    +  +S +KS   KL  + EPS+CR+L LP+N    ++ RLI+++SG+ +
Sbjct:   713 DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAI 772

Query:   327 VALTQTATHKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIA-ADPKDSISCFAL 384
             +AL   A H LWKWQ N + +  +   ++  Q +QP+S ++MTND+A  +P++++ CFAL
Sbjct:   773 LALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFAL 832

Query:   385 --RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 440
                 S++ SASGGKIS+F++ TF+T+ATF  PPP AT+    PQD  + A G DDS+I +
Sbjct:   833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQI 892

Query:   441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500
             +     + K+KLKGH  RIT LA+S  LNVLVSSGADAQLCVW+  GW+K  SK L   Q
Sbjct:   893 YNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQ 952

Query:   501 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560
              G    +     +QFH DQ+H L +HE Q+ +YE   L    Q    +   PIT+AT+SC
Sbjct:   953 -GRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSC 1011

Query:   561 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620
             D + IY S     + VF ++ L LRC++N +AY      +  ++PLVIAAHP E N  A+
Sbjct:  1012 DSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAV 1071

Query:   621 GLTNGRVHVIEPLESEVEWGKLP 643
             GL++G VH+ EPLESE +WG  P
Sbjct:  1072 GLSDGGVHIFEPLESEGKWGVAP 1094

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 4.1e-99, Sum P(3) = 4.1e-99
 Identities = 153/367 (41%), Positives = 225/367 (61%)

Query:   282 SLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQTATHKLWKW 340
             S++KS  L+L  I +P++CR + +PD+     +V RL+Y++SG  ++AL      +LWKW
Sbjct:   735 SVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKW 794

Query:   341 QSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSHLFSASGGKI 397
               N+Q+   +   ++  Q +QP+S L+M ND+  +P+ S+ C AL    S++ SA GGK+
Sbjct:   795 IRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCIALSKNDSYVMSACGGKV 854

Query:   398 SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 455
             S+F++ TF+ + TF  PPP +T+    PQD  + A G +DSSI ++     + K KLKGH
Sbjct:   855 SLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGH 914

Query:   456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 515
             Q  IT LA+S +LN+LVSSGADAQL  W A  W+K  S  +     G  P       +QF
Sbjct:   915 QKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQ-LPPGKAPVGD--TRVQF 971

Query:   516 HPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGHV 574
             H DQI LL  HE Q+ +Y+A  +    + VP + +  PIT A+YSC+ + +Y S   G++
Sbjct:   972 HNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASFADGNI 1031

Query:   575 KVFDTSTLELRCQINLTAYA-QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633
              VFD  +L LRC+I  +AY  QP   S  ++P VI AHP EPN++A+GL++G V VIEP 
Sbjct:  1032 AVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPS 1091

Query:   634 ESEVEWG 640
             E    WG
Sbjct:  1092 ELSRRWG 1098

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

WB|WBGene00004895 smu-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 93 (37.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
 Identities = 39/171 (22%), Positives = 74/171 (43%)

Query:   318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD 377
             ++S   ++LV+ ++    ++W + + K  L ++        YQ    L+M +  AA    
Sbjct:   221 VFSPDANYLVSGSKDGFIEVWNYMNGK--LRKD------LKYQAQDNLMMMD--AA---- 266

Query:   378 SISCFAL-RGSHLFSASG--GKISIFSLETFQTLATF--ANPPPIATYFILLPQDLFAFG 432
              + C +  R S + +     GKI ++ +ET   L  F  A+   +              G
Sbjct:   267 -VRCISFSRDSEMLATGSIDGKIKVWKVETGDCLRRFDRAHTKGVCAVRFSKDNSHILSG 325

Query:   433 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 483
              +D  + VH   + K   +++GH + IT + YS   N ++S   D  + VW
Sbjct:   326 GNDHVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW 376

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0007638 "mechanosensory behavior" evidence=IGI

GO:0048666 "neuron development" evidence=IGI

GO:0002119 "nematode larval development" evidence=IGI

GO:0040011 "locomotion" evidence=IGI

GO:0048644 "muscle organ morphogenesis" evidence=IGI

FB|FBgn0027524 CG3909 [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 43/137 (31%), Positives = 64/137 (46%)

Query:   445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 504
             T K + KLKGH   +  +A S     + SS  D+ +C+WDA    K   K L SF  G V
Sbjct:    74 TLKLRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWDARSGDK---KHLLSF--GPV 128

Query:   505 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 563
                T+    QF P   +++S +++G+I +Y   T      L        ++ A YS DGK
Sbjct:   129 DLWTV----QFSPCNKYVISGLNDGKISMYSVETGKAEQTLDAQNGKYTLSIA-YSPDGK 183

Query:   564 CIYVSCKSGHVKVFDTS 580
              I      G + +FD +
Sbjct:   184 YIASGAIDGIITIFDVA 200

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GENEDB_PFALCIPARUM|PFC0365w PFC0365w "conserved protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 134 (52.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 53/205 (25%), Positives = 89/205 (43%)

Query:   342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIF- 400
             +N    +  ++N    +Y  + + V  + I    KD ++  AL     +  S  K S++ 
Sbjct:   303 NNNNDNDGSHLNNNEYIYD-NYQFVSAHVITKH-KDHVTSLALHPLENYFISSSKDSMWI 360

Query:   401 --SLETFQTLATFANPPPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLKGHQN 457
                LET +T+ T  + P    +  + P  + F     DS+I ++   +++ KA L GH  
Sbjct:   361 LHDLETAKTIKTSKDNPSSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTK 420

Query:   458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517
              + CL++S +   L SS  D  + +WD    +K       SFQT  + ET   N I F  
Sbjct:   421 SLNCLSFSENGYYLASSSKDNTVKLWDL---RKA-----QSFQTITLNETP--NFISFDY 470

Query:   518 DQIHLLSIHEGQIDVYEAPTLNHTS 542
                +L    E  I +Y   T N  +
Sbjct:   471 SGKYLSIAVENDIQIYNFETKNQAN 495

GO:0016363 "nuclear matrix" evidence=ISS

UNIPROTKB|O77325 PFC0365w "PRP19-like protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 134 (52.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 53/205 (25%), Positives = 89/205 (43%)

Query:   342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIF- 400
             +N    +  ++N    +Y  + + V  + I    KD ++  AL     +  S  K S++ 
Sbjct:   303 NNNNDNDGSHLNNNEYIYD-NYQFVSAHVITKH-KDHVTSLALHPLENYFISSSKDSMWI 360

Query:   401 --SLETFQTLATFANPPPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLKGHQN 457
                LET +T+ T  + P    +  + P  + F     DS+I ++   +++ KA L GH  
Sbjct:   361 LHDLETAKTIKTSKDNPSSFKHLAIHPDGMMFGIAAQDSNIHIYDIKSQEYKATLNGHTK 420

Query:   458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517
              + CL++S +   L SS  D  + +WD    +K       SFQT  + ET   N I F  
Sbjct:   421 SLNCLSFSENGYYLASSSKDNTVKLWDL---RKA-----QSFQTITLNETP--NFISFDY 470

Query:   518 DQIHLLSIHEGQIDVYEAPTLNHTS 542
                +L    E  I +Y   T N  +
Sbjct:   471 SGKYLSIAVENDIQIYNFETKNQAN 495

GO:0016363 "nuclear matrix" evidence=ISS

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 128 (50.1 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 65/246 (26%), Positives = 104/246 (42%)

Query:   314 VVRLIYSHSGDFLVALTQTATHKLWKWQSN--KQSLEEENVNMESQLYQPSSKLVMTNDI 371
             V  + +S +G  L + +   T KLW   S+  K ++E  +  +ES  + P+ +L   N  
Sbjct:    86 VQSVAFSPNGQLLASGSSDTTIKLWNSASDSLKHTMEGHSDRVESVAFSPNGQL--WNPA 143

Query:   372 AADPKDSIS---------CFALRGSHLFSASGGK-ISIFSLETFQTLATFANPPPIATYF 421
                 K +I           F+  G  L S S  K I ++   T     T           
Sbjct:   144 IGSLKHTIEGHSDWVLSVAFSPDGQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPL 203

Query:   422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 480
             +  P   L A G +D++I +  P +   K  L+GH N+I  LA+S +  +L S  +DA +
Sbjct:   204 VFSPDGRLLASGSNDATIKLWDPPSGSLKHTLEGHSNKIESLAFSPNGQLLASGSSDATI 263

Query:   481 CVWD-AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQ--IDVYEAPT 537
              +WD A G          SF+  L   + +V  + F PD   LL    G   I +++  T
Sbjct:   264 KLWDTATG----------SFRHTLKGHSDMVLSVVFSPDS-QLLESGSGDNTIKLWDPAT 312

Query:   538 --LNHT 541
               L H+
Sbjct:   313 GILKHS 318

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
 Identities = 39/154 (25%), Positives = 72/154 (46%)

Query:   428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 487
             L   G DD ++ V    T K+   LKGH N + C  ++   N++VS   D  + +WD   
Sbjct:   128 LLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 187

Query:   488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLVP 546
              K  C K L +      P    V+ + F+ D  + + S ++G   +++  +      L+ 
Sbjct:   188 GK--CLKTLPAHSD---P----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 238

Query:   547 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580
             D  + P+++  +S +GK I  +     +K++D S
Sbjct:   239 DD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 271


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      660       640   0.00093  120 3  11 22  0.39    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  359 KB (2179 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  58.04u 0.08s 58.12t   Elapsed:  00:00:02
  Total cpu time:  58.05u 0.08s 58.13t   Elapsed:  00:00:02
  Start:  Mon May 20 22:01:13 2013   End:  Mon May 20 22:01:15 2013

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_400681.1	annotation not avaliable (749 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.8__2735__AT5G66810.1	annotation not avaliable (745 aa)							•		0.417

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	660
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	5e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 16/218 (7%)

Query: 376 KDSISCFAL--RGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 431
              ++C A    G  L + SG G I ++ LET + L T                    A 
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 432 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 491
           G  D +I +    T +    L GH + ++ +A+S    +L SS  D  + VWD       
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE--TGK 126

Query: 492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMD 550
           C   L             VN + F PD   + S   +G I +++  T    + L      
Sbjct: 127 CLTTLRGHTDW-------VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL--TGHT 177

Query: 551 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 588
             +    +S DG+ +  S   G +K++D ST +    +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 45/175 (25%), Positives = 66/175 (37%), Gaps = 27/175 (15%)

Query: 314 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 373
           V  + +S  G F+ + +Q  T KLW              ++ +       K V T     
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLW--------------DLRTG------KCVATLT--- 174

Query: 374 DPKDSISCFAL--RGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFILLP-QDLF 429
                ++  A    G  L S+S  G I ++ L T + L T              P   L 
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 430 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484
           A G +D +I V    T +    L GH N +T LA+S     L S  AD  + +WD
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 36/210 (17%)

Query: 319 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 378
           +S  G  L + ++  T K+W  ++ K                     + T        D 
Sbjct: 101 FSPDGRILSSSSRDKTIKVWDVETGKC--------------------LTT---LRGHTDW 137

Query: 379 ISCFALRGSHLFSASG---GKISIFSLETFQTLATFANPPPIATYFILLPQ-DLFAFGFD 434
           ++  A      F AS    G I ++ L T + +AT              P  +       
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 435 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 494
           D +I +    T K    L+GH+N +  +A+S    +L S   D  + VWD    + + + 
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Query: 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524
             H         T  V  + + PD   L S
Sbjct: 258 SGH---------TNSVTSLAWSPDGKRLAS 278

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 94  VFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDR 147
            F +    RE I  G+WD A ++LS+         S   F  +++QK+LE V +
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFE-LRKQKFLELVRQ 53

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.6 bits (127), Expect = 2e-07
 Identities = 81/437 (18%), Positives = 154/437 (35%), Gaps = 46/437 (10%)

Query: 170 ERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYC---INVMPNANNETISLKDFPTVSN 226
             N     + K   + KS L   +  +    +      I ++   ++  +SL D  ++  
Sbjct: 2   VDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLL 61

Query: 227 LRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKS 286
             +  SI +   + +G  L + S D +     ++ +N  +   SL     +  +K    S
Sbjct: 62  RGHEDSITSIAFSPDGELLLSGSSDGT--IKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 287 VNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----------LVALTQTATHK 336
            +    L+   S   T+ L D S  G+++R +  HS             L+A   +    
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGK 396
           +  W                      +  V +   + D    I+           +S G 
Sbjct: 180 IKLWDLRTGKPL--------STLAGHTDPVSSLAFSPDGGLLIAS---------GSSDGT 222

Query: 397 ISIFSLETFQTLATFANPPPIATYFILLPQ-DLFAFGFDDSSILV-HCPCTKKTKAKLKG 454
           I ++ L T + L +  +    +      P   L A G  D +I +     +      L G
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 514
           H + +  +A+S    +L S  +D  + +WD    K L S  L             V+ + 
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-------HEGPVSSLS 335

Query: 515 FHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 572
           F PD   L+S    +G I +++  T      L        +   ++S DG+ +      G
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS---NVLSVSFSPDGRVVSSGSTDG 392

Query: 573 HVKVFDTSTLELRCQIN 589
            V+++D ST  L   ++
Sbjct: 393 TVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484
           + +    LKGH   +T +A+S     L S   D  + +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484
            K    LKGH   +T +A+S   N+L S   D  + VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 63/357 (17%), Positives = 123/357 (34%), Gaps = 49/357 (13%)

Query: 253 SNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG 312
            N S     +       SL           +     L   L++ P     LL        
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLL---RGHED 66

Query: 313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIA 372
            +  + +S  G+ L++ +   T KLW   + ++ ++      +S +              
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSV-------------- 112

Query: 373 ADPKDSISCFALRGSHLFSASG---GKISIFSLET-FQTLATFANPPPIATYFILLPQD- 427
                 ++  +  G+ +  AS    G + ++ L T  + + T        T     P   
Sbjct: 113 ----SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK 168

Query: 428 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDA 485
            L +    D +I +    T K  + L GH + ++ LA+S     ++ S  +D  + +WD 
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD- 227

Query: 486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQ-----FHPDQIHLLSIHE-GQIDVYEAPTLN 539
                          TG +  +T+  H       F PD   L S    G I +++  + +
Sbjct: 228 -------------LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274

Query: 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 596
              + +       +    +S DGK +      G V+++D  T +L   + L  +  P
Sbjct: 275 SLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 36/168 (21%)

Query: 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD---------------AVGWKKLCSK-- 494
           LKGH   +TC+A+S    +L +   D  + VWD                V      +   
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 495 -----------FLHSFQTGLVPETTI-----VNHIQFHPD-QIHLLSIHEGQIDVYEAPT 537
                       L   +TG    T       V+ + F PD +I   S  +  I V++  T
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124

Query: 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 585
               + L     D  +    +S DG  +  S + G +K++D  T +  
Sbjct: 125 GKCLTTL-RGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 65 KEELIYLIHQFLNEEEFKETLHKLEQETRV 94
          + EL  LI ++L    ++ET   L++E+ +
Sbjct: 3  RSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	660
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
PTZ00421	493	coronin; Provisional	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
PTZ00420	568	coronin; Provisional	99.95
PTZ00420	568	coronin; Provisional	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG1334	559	consensus WD40 repeat protein [General function pr	99.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.62
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG2315	566	consensus Predicted translation initiation factor	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.58
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.58
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
KOG1310	758	consensus WD40 repeat protein [General function pr	99.53
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.5
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.48
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.46
KOG2314	698	consensus Translation initiation factor 3, subunit	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.4
PRK00178	430	tolB translocation protein TolB; Provisional	99.36
KOG2315	566	consensus Predicted translation initiation factor	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
COG4946	668	Uncharacterized protein related to the periplasmic	99.29
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
PRK01029	428	tolB translocation protein TolB; Provisional	99.27
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.27
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.27
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.26
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.25
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.22
KOG4547	541	consensus WD40 repeat-containing protein [General	99.21
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.2
COG4946	668	Uncharacterized protein related to the periplasmic	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.15
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.15
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.09
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.07
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.04
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.99
KOG2314	698	consensus Translation initiation factor 3, subunit	98.98
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.97
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.96
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.95
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.93
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.93
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.84
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.83
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.81
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.8
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.79
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.78
KOG2695	425	consensus WD40 repeat protein [General function pr	98.75
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.72
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.71
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.68
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.59
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.54
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.53
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.53
KOG2695	425	consensus WD40 repeat protein [General function pr	98.52
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.48
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.47
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.47
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.45
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.44
PRK02888	635	nitrous-oxide reductase; Validated	98.4
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.36
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.35
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.35
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.28
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.28
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.22
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.19
KOG3621	726	consensus WD40 repeat-containing protein [General	98.19
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.13
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.13
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.13
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	98.08
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.07
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.05
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.03
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.03
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.02
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.9
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.9
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.88
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.85
PRK02888	635	nitrous-oxide reductase; Validated	97.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.78
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.73
KOG3621	726	consensus WD40 repeat-containing protein [General	97.71
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.66
COG3391	381	Uncharacterized conserved protein [Function unknow	97.61
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.57
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.57
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.56
COG3391	381	Uncharacterized conserved protein [Function unknow	97.56
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.54
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	97.51
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.5
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.48
PRK13616	591	lipoprotein LpqB; Provisional	97.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.38
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.26
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.24
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.18
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.09
PHA02713	557	hypothetical protein; Provisional	97.07
KOG2395	644	consensus Protein involved in vacuole import and d	97.06
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.06
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.98
KOG2395	644	consensus Protein involved in vacuole import and d	96.9
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.9
PRK13616	591	lipoprotein LpqB; Provisional	96.83
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.78
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.51
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.5
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.43
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.39
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.39
PHA02713	557	hypothetical protein; Provisional	96.38
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.37
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.28
KOG2444	238	consensus WD40 repeat protein [General function pr	96.23
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.04
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.91
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.84
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.84
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.57
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.36
KOG0396	389	consensus Uncharacterized conserved protein [Funct	95.29
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.29
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.17
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.16
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.15
PHA03098	534	kelch-like protein; Provisional	95.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.06
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.03
KOG2444	238	consensus WD40 repeat protein [General function pr	94.79
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.71
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.71
PRK10115	686	protease 2; Provisional	94.67
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.49
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.48
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.31
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.29
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.29
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.25
PRK13684	334	Ycf48-like protein; Provisional	94.19
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.91
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.82
PHA02790	480	Kelch-like protein; Provisional	93.78
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.75
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.61
PF06588	199	Muskelin_N: Muskelin N-terminus; InterPro: IPR0105	93.6
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.52
PHA03098	534	kelch-like protein; Provisional	93.36
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.09
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.73
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.6
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.39
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.23
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.19
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.18
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	91.98
COG5167	776	VID27 Protein involved in vacuole import and degra	91.96
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.93
PHA02790	480	Kelch-like protein; Provisional	91.87
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.64
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.06
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.47
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.39
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.32
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.11
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.09
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.7
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.58
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.08
KOG2247	615	consensus WD40 repeat-containing protein [General	89.03
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.91
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.84
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.73
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.65
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.6
PRK10115	686	protease 2; Provisional	88.5
KOG2247	615	consensus WD40 repeat-containing protein [General	88.27
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	88.18
COG5276	370	Uncharacterized conserved protein [Function unknow	88.07
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.99
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.98
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.91
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	87.36
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.25
PRK13684	334	Ycf48-like protein; Provisional	87.18
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.01
COG5276	370	Uncharacterized conserved protein [Function unknow	86.88
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.42
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.83
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	85.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.94
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.82
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.74
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	83.64
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.47
COG5167	776	VID27 Protein involved in vacuole import and degra	83.33
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.23
COG4590	733	ABC-type uncharacterized transport system, permeas	82.89
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.75
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.65
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	81.99
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	81.74
COG3292	671	Predicted periplasmic ligand-binding sensor domain	81.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	81.39

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.2e-63  Score=456.56  Aligned_cols=459  Identities=20%  Similarity=0.309  Sum_probs=378.2

Q ss_pred             cHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc----HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHH
Q 006126           64 TKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQ  139 (660)
Q Consensus        64 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~----~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q  139 (660)
                      .+.+++|||.|||+|+.+..|+++||+|+++++|    ++.|.+.|.+|+||.+++.+.++      .++...++++|||
T Consensus         6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq   79 (508)
T KOG0275|consen    6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ   79 (508)
T ss_pred             ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence            3568999999999999999999999999999997    89999999999999999999999      8889999999999


Q ss_pred             HHHHHhhhcc-------------------CCCCchh-----------hhhchhhhhhhhhccCccccccc--CCCccchh
Q 006126          140 KYLEAVDRQQ-------------------KLPSDFA-----------ERAHLFDDFKVLVERNPMLQDKL--KFPSMDKS  187 (660)
Q Consensus       140 ~~lell~~~e-------------------~~p~~~~-----------~~~~~l~~~~~~~~~~~~l~~~l--~~~~~p~~  187 (660)
                      ..+|++|..|                   .+|++|.           ++.+.+.+..+ +++|..+++.+  ++..+||+
T Consensus        80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssK-EkrRa~IAQ~ls~EV~VVppS  158 (508)
T KOG0275|consen   80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSK-EKRRAVIAQALSGEVHVVPPS  158 (508)
T ss_pred             HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchH-HHHHHHHHHHhcCceEEcChH
Confidence            9999999984                   5566653           44444544333 34455557776  66778999


Q ss_pred             HHHHHHhhhcceeeeeeeecCCCCCcccccccCccccchhhhccccccCCCCCCCCccccccCCCCCCceeecCCCCcee
Q 006126          188 RLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRE  267 (660)
Q Consensus       188 rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  267 (660)
                      ||+.||.||++||.  ..+++|+                               |..+++|+|....-..          
T Consensus       159 RLlaLlGQaLKWQq--HQGLLPP-------------------------------Gt~iDLFRGkAA~K~~----------  195 (508)
T KOG0275|consen  159 RLLALLGQALKWQQ--HQGLLPP-------------------------------GTTIDLFRGKAAMKDQ----------  195 (508)
T ss_pred             HHHHHHHHHhhhHh--hcCCCCC-------------------------------Cceeeeccchhhhhhh----------
Confidence            99999999999999  6666777                               7888899887661110          


Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                                             .+....+.....+++   |..+.+.|..|||||+||++|+.||.|.+|++.+++...
T Consensus       196 -----------------------~Ee~~Pt~l~r~IKF---g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK  249 (508)
T KOG0275|consen  196 -----------------------EEERYPTQLARSIKF---GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK  249 (508)
T ss_pred             -----------------------HhhhchHHhhhheec---ccccchhheeeCCCCceEeeccccceeeeehhccchhhh
Confidence                                   000000112222333   247789999999999999999999999999999887644


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFIL  423 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~  423 (660)
                      .        .-|......++       +..+|.|+.|+  ...+++|+ ||.|++|.+.+|.|++.|. .|..+|+|+.|
T Consensus       250 D--------LkYQAqd~fMM-------md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F  314 (508)
T KOG0275|consen  250 D--------LKYQAQDNFMM-------MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF  314 (508)
T ss_pred             h--------hhhhhhcceee-------cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE
Confidence            3        23444444443       78899999999  77899999 9999999999999999998 99999999999


Q ss_pred             cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      +.|+ .+++++.|.++++..+.+|++++.++||.+.|+...|.+||..+++++.||+|++|+.++.++.....     ..
T Consensus       315 SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk-----~~  389 (508)
T KOG0275|consen  315 SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK-----PL  389 (508)
T ss_pred             ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc-----CC
Confidence            9999 99999999999999999999999999999999999999999999999999999999999965543322     22


Q ss_pred             cCCCCCCeEEEEEecC-CcEEEEE-ecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          503 LVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      ...  .+|+++..-|. ...++++ ..++|+|.++ .|+.++++..+. ..+...+++.||.|.++++.++|+.++.|.+
T Consensus       390 ~~d--~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  390 GTD--YPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             CCc--ccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence            222  67888888874 3455555 7889999999 688888886542 3677888999999999999999999999999


Q ss_pred             CCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          580 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      .+|++...+..+       +..   ++.++.|| ..+.+|+-+.||.+++|.+
T Consensus       467 ~sG~LE~tl~Vh-------Ekd---vIGl~HHP-HqNllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  467 LSGKLERTLPVH-------EKD---VIGLTHHP-HQNLLASYSEDGLLKLWKP  508 (508)
T ss_pred             ecCceeeeeecc-------ccc---ccccccCc-ccchhhhhcccchhhhcCC
Confidence            999999888754       232   45899999 7899999999999999974

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-61  Score=458.42  Aligned_cols=457  Identities=16%  Similarity=0.245  Sum_probs=369.3

Q ss_pred             cHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc---HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHHH
Q 006126           64 TKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQK  140 (660)
Q Consensus        64 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~---~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~  140 (660)
                      .+.|++|+++|+|.++||.+|+.+||.|+|+...   .+.|.+.++.|+|++++..+..+...++.....+.|+ +.||+
T Consensus        16 kk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fL-v~kQ~   94 (519)
T KOG0293|consen   16 KKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFL-VNKQI   94 (519)
T ss_pred             ccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHH-HHHHH
Confidence            4789999999999999999999999999999884   8999999999999999999998876677778888899 99999


Q ss_pred             HHHHhhhcc-----------CCCCchh-hhhchhhhhhhh---------------hccCcccccccCC---Ccc--chhH
Q 006126          141 YLEAVDRQQ-----------KLPSDFA-ERAHLFDDFKVL---------------VERNPMLQDKLKF---PSM--DKSR  188 (660)
Q Consensus       141 ~lell~~~e-----------~~p~~~~-~~~~~l~~~~~~---------------~~~~~~l~~~l~~---~~~--p~~r  188 (660)
                      |||++..+.           ..++++. ++.|.+.+....               ...|..|.++++.   |.+  |++|
T Consensus        95 fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~rR  174 (519)
T KOG0293|consen   95 FLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKRR  174 (519)
T ss_pred             HHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChHH
Confidence            999999772           3344554 565666554332               2234445555533   333  9999


Q ss_pred             HHHHHhhhcceeeeeeeecCCCCCcccccccCccccchhhhccccccCCCCCCCCccccccCCCCCCceeecCCCCceee
Q 006126          189 LLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRES  268 (660)
Q Consensus       189 L~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  268 (660)
                      |++|++||+.+|++.|.  |||..+. ++                                        ++.+|.|...-
T Consensus       175 LehLl~qAv~~Q~d~cv--yhnslds-vs----------------------------------------ll~Dh~c~~~q  211 (519)
T KOG0293|consen  175 LEHLLEQAVKYQRDSCV--YHNSLDS-VS----------------------------------------LLSDHFCGRLQ  211 (519)
T ss_pred             HHHHHHHHHHHHHhHhH--Hhcccch-hh----------------------------------------hhhhcccCccc
Confidence            99999999999999998  9985222 22                                        55555555410


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .                           +.+-.++ +.+  |+++||.+.||++|+|||+++.|.+..+|.+...     
T Consensus       212 i---------------------------p~qt~qi-l~~--htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----  256 (519)
T KOG0293|consen  212 I---------------------------PSQTWQI-LQD--HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----  256 (519)
T ss_pred             C---------------------------Cchhhhh-Hhh--CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----
Confidence            0                           1111111 333  9999999999999999999999999999985433     


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEc
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILL  424 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~s  424 (660)
                                  .. -.+..++.  +|..+|..+.|+  +++|++|+ +..+.+||+.+|.+...+. ++...+.+++|.
T Consensus       257 ------------~~-~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~  321 (519)
T KOG0293|consen  257 ------------VH-FKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC  321 (519)
T ss_pred             ------------cc-eeeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEc
Confidence                        22 12233222  899999999999  78999988 8999999999999988876 456788999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      ||| .+++|+.|++|..||+. |..+..+++- ...|.+++.++||+++++.+.|..|++++..+...     .. +...
T Consensus       322 pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-----r~-lise  394 (519)
T KOG0293|consen  322 PDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-----RG-LISE  394 (519)
T ss_pred             cCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-----hc-cccc
Confidence            999 99999999999999987 5566667663 35699999999999999999999999999987322     21 2223


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEECC
Q 006126          503 LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      +    .+|++++.|.||+++++. .+..+++||++..+.++.+.++.....+..-||. .+..++++|++|+.|+||+..
T Consensus       395 ~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  395 E----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             c----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence            3    479999999999999996 8999999999999999999887667778888997 456899999999999999999


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      +|+++.++.       || ...++  +|+|+|.+..++|+||+||+||||.+...
T Consensus       471 sgkll~~Ls-------GH-s~~vN--cVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  471 SGKLLAVLS-------GH-SKTVN--CVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCceeEeec-------CC-cceee--EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            999999997       65 34455  99999999999999999999999998643

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-52  Score=392.98  Aligned_cols=327  Identities=20%  Similarity=0.257  Sum_probs=286.3

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      +...+.||.. |.+.           .|+|+|+.||+|+.|.++|+||+.+     +...++..  +|.+.|.|++|+||
T Consensus       107 CssS~~GH~e~Vl~~-----------~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~K--gH~~WVlcvawsPD  168 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSV-----------QFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCK--GHKNWVLCVAWSPD  168 (480)
T ss_pred             eccccCCCCCcEEEE-----------EecCCCceEEecCCCceEEeeccCC-----CCcceeec--CCccEEEEEEECCC
Confidence            4455677776 6665           9999999999999999999999985     22222233  49999999999999


Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-------CCEEEEEe-C
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-G  394 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------~~~l~s~~-d  394 (660)
                      |+.||+|+.||+|++||.++++.                     +-..+. +|...|++++|.       ..+|++++ |
T Consensus       169 gk~iASG~~dg~I~lwdpktg~~---------------------~g~~l~-gH~K~It~Lawep~hl~p~~r~las~skD  226 (480)
T KOG0271|consen  169 GKKIASGSKDGSIRLWDPKTGQQ---------------------IGRALR-GHKKWITALAWEPLHLVPPCRRLASSSKD  226 (480)
T ss_pred             cchhhccccCCeEEEecCCCCCc---------------------cccccc-CcccceeEEeecccccCCCccceecccCC
Confidence            99999999999999888666654                     111111 799999999998       56899999 9


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe---------
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS---------  465 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s---------  465 (660)
                      |.|+|||+..++++..+.+|..+|+|+.|-.+|++++|+.|++|++|+...|.+.+.+++|...|+.++.+         
T Consensus       227 g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtga  306 (480)
T KOG0271|consen  227 GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGA  306 (480)
T ss_pred             CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccc
Confidence            99999999999999999999999999999988899999999999999999999999999999999999876         


Q ss_pred             --CCCC-------------------------EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126          466 --LSLN-------------------------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  518 (660)
Q Consensus       466 --p~~~-------------------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  518 (660)
                        |.++                         .|++|+.|.++.+|+....    .+++. ...+|.   .-|+.+.||||
T Consensus       307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~----kkpi~-rmtgHq---~lVn~V~fSPd  378 (480)
T KOG0271|consen  307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS----KKPIT-RMTGHQ---ALVNHVSFSPD  378 (480)
T ss_pred             cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----ccchh-hhhchh---hheeeEEECCC
Confidence              2233                         5999999999999997652    24555 567888   69999999999


Q ss_pred             CcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCC
Q 006126          519 QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG  597 (660)
Q Consensus       519 ~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~g  597 (660)
                      ++++++ +.|..|++||.++|+.+.++.+  |-..|+.++|+.|.++|++|+.|.++++|++++.++...++       |
T Consensus       379 ~r~IASaSFDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-------G  449 (480)
T KOG0271|consen  379 GRYIASASFDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-------G  449 (480)
T ss_pred             ccEEEEeecccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-------C
Confidence            999999 6999999999999999999976  79999999999999999999999999999999999888876       6


Q ss_pred             CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      | .+.|+  +|.|+| ||..+++|+.|..+++|.
T Consensus       450 h-~DEVf--~vDwsp-DG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  450 H-ADEVF--AVDWSP-DGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             C-CceEE--EEEecC-CCceeecCCCceEEEeec
Confidence            6 66677  999999 899999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9e-47  Score=365.41  Aligned_cols=480  Identities=16%  Similarity=0.158  Sum_probs=337.4

Q ss_pred             ccHHHHHHHHHHhhchhhHHHHHHHHhhhccccc-c-------HHHHHHHHhcC-chHhHHHhhhhhcCCCCC-------
Q 006126           63 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFF-D-------INYFREYITSG-EWDNAEKYLSAFTNMNDN-------  126 (660)
Q Consensus        63 ~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~-~-------~~~l~~~i~~G-~w~~~~~~l~~~~~~~~~-------  126 (660)
                      .+++||++||++||+|+||.+||++|+.|++|.. |       +..|.+.+++| +|.|++..+..-....+.       
T Consensus         3 itsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~~~~~~v~d~~~e~~~~   82 (524)
T KOG0273|consen    3 ITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHLNESGVVFDAPIESLSL   82 (524)
T ss_pred             ccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeeeccCCccccccccccch
Confidence            4689999999999999999999999999999966 3       78899999999 777777766432111110       


Q ss_pred             -cchhhhHHHHHHHHHHHHhhhccCCCCchhhhhchhhhhhhhhccCcccccccCCCccchhHHHHHHhhh-cceeeeee
Q 006126          127 -TYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQI-MDWWVPYC  204 (660)
Q Consensus       127 -~~~~~~~~~i~~q~~lell~~~e~~p~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~qa-~~~q~~~~  204 (660)
                       .+-..-..+|.+|+|-|.+..+...     .....++.+..-            .+.-|+.+    ++|- .+--... 
T Consensus        83 ~d~v~~~~~ql~~~~~~e~~s~~~~~-----~~~~~~~~~~~~------------s~s~~ag~----~~~~d~a~~~er-  140 (524)
T KOG0273|consen   83 EDLVMEDVVQLRQQAFREKLSEEQFC-----AQLKIAQDKESG------------STSTPAGS----ISQRDGAKTGER-  140 (524)
T ss_pred             hhhccccccccchhhhhhhccccchh-----hhhhhhhhhccC------------CcCCCCCc----cccccchhhcch-
Confidence             1111112235566666666554111     000000000000            01111111    0000 0000000 


Q ss_pred             eecCCCC-CcccccccCccccchhhhccccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecCCCC-EEEEEe
Q 006126          205 INVMPNA-NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDAD-SAVCAK  281 (660)
Q Consensus       205 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~-~l~s~~  281 (660)
                         -.+. .+...++.      ......-+.-... +....+.+.. |.. |+.+           +|.|-.. .+++++
T Consensus       141 ---~~n~eed~a~~I~------~~~e~~~i~~~~~-I~~~~~kvl~-~~~~V~~~-----------~WnP~~~~llasg~  198 (524)
T KOG0273|consen  141 ---TSNGEEDKAMSID------VHTEPMEIDGGVE-IPSSKAKVLR-HESEVFIC-----------AWNPLRDGLLASGS  198 (524)
T ss_pred             ---hcccccCcccccc------ccccceeeccccc-ccccceeecc-CCCceEEE-----------ecCchhhhhhhccC
Confidence               0000 00000000      0000000000000 0011222233 322 4444           8999887 899999


Q ss_pred             CCCcEEEEeccCcCCCc----ceeee---ecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126          282 SLEKSVNLKLQLINEPS----ECRTL---LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       282 ~dg~i~iwd~~~~~~~~----~~~~~---~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      .|-+.++|++.......    .+++.   -..+......|++++|+.+|..||+|+.||.+++|+......         
T Consensus       199 ~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~---------  269 (524)
T KOG0273|consen  199 GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI---------  269 (524)
T ss_pred             CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh---------
Confidence            99999999997310000    01100   001111356899999999999999999999999998655432         


Q ss_pred             eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEE
Q 006126          355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAF  431 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s  431 (660)
                                   ..+-  .|+++|.++.|+  |.||++++ |+++.+||..+|+..+.+..|..+...+.|-.+..|++
T Consensus       270 -------------~tl~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~t  334 (524)
T KOG0273|consen  270 -------------STLG--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFAT  334 (524)
T ss_pred             -------------hhhh--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEee
Confidence                         2111  699999999999  99999999 99999999999999999999988877899987779999


Q ss_pred             EeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeE
Q 006126          432 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN  511 (660)
Q Consensus       432 ~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  511 (660)
                      ++.|+.|+|+-+....++.++.+|.+.|.++.|+|.|.+|++++.|+++++|.+...     ...+ -+..|.   ..|.
T Consensus       335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~-~l~~Hs---kei~  405 (524)
T KOG0273|consen  335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----NSVH-DLQAHS---KEIY  405 (524)
T ss_pred             cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----cchh-hhhhhc---ccee
Confidence            999999999999999999999999999999999999999999999999999998773     2333 344676   6899


Q ss_pred             EEEEecCC---------cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          512 HIQFHPDQ---------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       512 ~~~~sp~~---------~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      .+.|+|+|         ..+++ +.|++|++||+..+.++.++..  |..+|++++|+|+|+++|+|+.||.|.||+.++
T Consensus       406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence            99999965         34565 6999999999999999999864  799999999999999999999999999999999


Q ss_pred             CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          582 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +++.+.+..         +..|.  .++|+- +|+.+..+-.||.+++-|+.
T Consensus       484 ~~l~~s~~~---------~~~If--el~Wn~-~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  484 GKLVKSYQG---------TGGIF--ELCWNA-AGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             hheeEeecC---------CCeEE--EEEEcC-CCCEEEEEecCCCceEEEec
Confidence            999998762         33344  999999 89999999999999998874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.4e-43  Score=329.64  Aligned_cols=324  Identities=15%  Similarity=0.187  Sum_probs=271.4

Q ss_pred             eeecCCCCCcccccccCccccchhhhc--cccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEE
Q 006126          204 CINVMPNANNETISLKDFPTVSNLRYA--SSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCA  280 (660)
Q Consensus       204 ~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~  280 (660)
                      |..-++......++....|+.+.+..-  .+-.+.....+.+|..+.+||.. |.+.           +|||||+.||+|
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcv-----------awsPDgk~iASG  175 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCV-----------AWSPDGKKIASG  175 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEE-----------EECCCcchhhcc
Confidence            554455444444444444444333332  55566777788889999999999 7776           999999999999


Q ss_pred             eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-----CCCEEEEEECCCcEEEEeccCCceeeeeecccee
Q 006126          281 KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-----SGDFLVALTQTATHKLWKWQSNKQSLEEENVNME  355 (660)
Q Consensus       281 ~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-----dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~  355 (660)
                      +.||+|++||.++    ++..--.|++  |...|.+++|.|     ..++||+++.||.++|||+..+..          
T Consensus       176 ~~dg~I~lwdpkt----g~~~g~~l~g--H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----------  239 (480)
T KOG0271|consen  176 SKDGSIRLWDPKT----GQQIGRALRG--HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----------  239 (480)
T ss_pred             ccCCeEEEecCCC----CCcccccccC--cccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----------
Confidence            9999999999985    4444334654  999999999976     567999999999999998766554          


Q ss_pred             EEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc---------
Q 006126          356 SQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL---------  424 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s---------  424 (660)
                                 +..+.  ||+.+|+|+.|- ..++++|+ |++|++|+...|.+.+++++|...|+.++.+         
T Consensus       240 -----------~~~ls--gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtga  306 (480)
T KOG0271|consen  240 -----------VRTLS--GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGA  306 (480)
T ss_pred             -----------EEEec--cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccc
Confidence                       22112  899999999999 88999999 9999999999999999999999999998877         


Q ss_pred             --CCC--------------------------eEEEEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126          425 --PQD--------------------------LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       425 --p~~--------------------------~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                        |.+                          .+++|++|.++.+|+... .+++..+.+|..-|+.+.|+||++++++++
T Consensus       307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS  386 (480)
T KOG0271|consen  307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS  386 (480)
T ss_pred             cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence              223                          499999999999999764 457888999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT  554 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  554 (660)
                      .|..|++||.++|+.     +. .+.||-   +.|+.++|+.|.++|++ +.|.++++||+++.+....+.+  |...|.
T Consensus       387 FDkSVkLW~g~tGk~-----la-sfRGHv---~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG--h~DEVf  455 (480)
T KOG0271|consen  387 FDKSVKLWDGRTGKF-----LA-SFRGHV---AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG--HADEVF  455 (480)
T ss_pred             cccceeeeeCCCcch-----hh-hhhhcc---ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC--CCceEE
Confidence            999999999999753     33 567888   79999999999999999 5999999999999998888865  799999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEE
Q 006126          555 YATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      ++.|+|||..+++|+.|..+++|.
T Consensus       456 ~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  456 AVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.5e-42  Score=328.20  Aligned_cols=278  Identities=15%  Similarity=0.212  Sum_probs=252.4

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C--
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G--  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~--  386 (660)
                      -+.+|..+.||+|++.|+|||-+|.++||+......                     +..+.  ||...|.++.|+ +  
T Consensus       174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------~~~l~--gH~~~v~~~~fhP~~~  230 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------LQTLR--GHTSRVGAAVFHPVDS  230 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecCCceeEeecCCcce---------------------eEEEe--ccccceeeEEEccCCC
Confidence            578999999999999999999999999998766633                     22222  899999999999 3  


Q ss_pred             -CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          387 -SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       387 -~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                       ..+++|+ ||++++|++.+..++..+.+|...|..++|+|+| +|++++.|.+-++||++++..+...+||...|.+++
T Consensus       231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia  310 (459)
T KOG0272|consen  231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA  310 (459)
T ss_pred             ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence             4799999 9999999999999999999999999999999999 999999999999999999999988999999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~  542 (660)
                      |+|||..+++|+.|..-+|||+++|..     +. ++.+|.   .+|.+|+|+|+|..|++ |.|++++|||++..+.+.
T Consensus       311 f~~DGSL~~tGGlD~~~RvWDlRtgr~-----im-~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly  381 (459)
T KOG0272|consen  311 FQPDGSLAATGGLDSLGRVWDLRTGRC-----IM-FLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY  381 (459)
T ss_pred             ecCCCceeeccCccchhheeecccCcE-----EE-Eecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccce
Confidence            999999999999999999999999753     34 577898   79999999999999999 599999999999988877


Q ss_pred             eecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          543 QLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ++..  |..-|+.++|+| .|.+|++++.|++++||...++.++..+.       || ...|  .+++.+| |+.+++|+
T Consensus       382 ~ipA--H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-------GH-e~kV--~s~Dis~-d~~~i~t~  448 (459)
T KOG0272|consen  382 TIPA--HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-------GH-EGKV--ISLDISP-DSQAIATS  448 (459)
T ss_pred             eccc--ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-------CC-ccce--EEEEecc-CCceEEEe
Confidence            7754  799999999998 78999999999999999999999999987       66 4444  4999999 89999999


Q ss_pred             eCCCeEEEEeC
Q 006126          622 LTNGRVHVIEP  632 (660)
Q Consensus       622 s~Dg~v~iw~~  632 (660)
                      +.|.++++|..
T Consensus       449 s~DRT~KLW~~  459 (459)
T KOG0272|consen  449 SFDRTIKLWRP  459 (459)
T ss_pred             ccCceeeeccC
Confidence            99999999963

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.9e-40  Score=300.74  Aligned_cols=290  Identities=15%  Similarity=0.163  Sum_probs=252.8

Q ss_pred             cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126          245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG  323 (660)
Q Consensus       245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg  323 (660)
                      .++++||.. |+.+           .|++|+++|++++.||.+.|||..+   +.+...++++    ...|..++|+|.|
T Consensus        48 rr~LkGH~~Ki~~~-----------~ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl~----s~WVMtCA~sPSg  109 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAM-----------DWSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPLP----SSWVMTCAYSPSG  109 (343)
T ss_pred             EEEecccccceeee-----------EecCCcCeEEeeccCCeEEEEEccc---ccceeEEecC----ceeEEEEEECCCC
Confidence            377899987 7777           9999999999999999999999987   5666666664    6799999999999


Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFS  401 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd  401 (660)
                      +++|+|+-|+...||++...+.                +....+.. ...+|.+.+.|+.|- +..|++++ |.+..+||
T Consensus       110 ~~VAcGGLdN~Csiy~ls~~d~----------------~g~~~v~r-~l~gHtgylScC~f~dD~~ilT~SGD~TCalWD  172 (343)
T KOG0286|consen  110 NFVACGGLDNKCSIYPLSTRDA----------------EGNVRVSR-ELAGHTGYLSCCRFLDDNHILTGSGDMTCALWD  172 (343)
T ss_pred             CeEEecCcCceeEEEecccccc----------------cccceeee-eecCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence            9999999999999999874422                00111111 112899999999999 88999999 99999999


Q ss_pred             CCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          402 LETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       402 ~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      +++|+.+..|.+|...|.+++++| ++ .+++|+-|+..++||++.+.++++|.+|...|+++.|.|+|.-+++|+.|++
T Consensus       173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce
Confidence            999999999999999999999999 77 9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY  558 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  558 (660)
                      .++||++..+.+....       |.+....|++++||..|++|.+| .|..+.+||.-.++.+..+.+  |...|.++..
T Consensus       253 cRlyDlRaD~~~a~ys-------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G--HeNRvScl~~  323 (343)
T KOG0286|consen  253 CRLYDLRADQELAVYS-------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG--HENRVSCLGV  323 (343)
T ss_pred             eEEEeecCCcEEeeec-------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec--cCCeeEEEEE
Confidence            9999999965332211       21112689999999999999996 889999999989998888865  7999999999


Q ss_pred             ccCCCEEEEEecCCeEEEEE
Q 006126          559 SCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       559 s~dg~~l~sg~~dg~I~iwd  578 (660)
                      +|||.-+++|++|..++||.
T Consensus       324 s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  324 SPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCCcEEEecchhHheeecC
Confidence            99999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-41  Score=324.39  Aligned_cols=270  Identities=19%  Similarity=0.161  Sum_probs=242.9

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC--CCEEEEEECCCcEEEEeccCCce
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd--g~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      +.||+|++.||||+.+|.+++|+...    .... .+|.  ||...|.++.|+|.  +..+|||+.||++++|++.+...
T Consensus       181 ~~fS~ds~~laT~swsG~~kvW~~~~----~~~~-~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~  253 (459)
T KOG0272|consen  181 CSFSRDSKHLATGSWSGLVKVWSVPQ----CNLL-QTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP  253 (459)
T ss_pred             eEeecCCCeEEEeecCCceeEeecCC----ccee-EEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence            49999999999999999999999974    2222 2354  49999999999997  67899999999999999876543


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                                           +..+  ++|...|..++|+  |++|++++ |.+-++||+.++..+....+|...|.+++
T Consensus       254 ---------------------l~~l--~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia  310 (459)
T KOG0272|consen  254 ---------------------LQDL--EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA  310 (459)
T ss_pred             ---------------------hhhh--hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence                                 1111  2899999999999  99999999 99999999999999888899999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      |.||| .+++|+.|..-+|||+++|+++..+.+|...|.++.|+|+|..|++|+.|++++|||++..     ..+. +..
T Consensus       311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly-~ip  384 (459)
T KOG0272|consen  311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELY-TIP  384 (459)
T ss_pred             ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccce-ecc
Confidence            99999 9999999999999999999999999999999999999999999999999999999999983     3455 556


Q ss_pred             ccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          502 GLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       502 ~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      +|.   +-|+.+.|+| .|.+|++ +.|+++++|..++..+++++.+  |.+.|.++.+++|++++++++.|+++++|.
T Consensus       385 AH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG--He~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  385 AHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG--HEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--CccceEEEEeccCCceEEEeccCceeeecc
Confidence            777   6899999999 6788888 6999999999999999999976  799999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.8e-39  Score=292.24  Aligned_cols=280  Identities=16%  Similarity=0.222  Sum_probs=250.4

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ||.+.|.++.|++|.++|+++|.||.+.|||.-+.....                  .+.     -....|..++|+  |
T Consensus        53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h------------------aip-----l~s~WVMtCA~sPSg  109 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH------------------AIP-----LPSSWVMTCAYSPSG  109 (343)
T ss_pred             ccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee------------------EEe-----cCceeEEEEEECCCC
Confidence            499999999999999999999999999999865543311                  111     256789999999  9


Q ss_pred             CEEEEEe-CCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          387 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                      +++|+|+ |+...||++.+.      ...+.+.+|..-+.|+.|-+|+.|++++.|.+..+||+++|+.+..|.+|.+.|
T Consensus       110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV  189 (343)
T KOG0286|consen  110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV  189 (343)
T ss_pred             CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence            9999999 999999999854      456678899999999999997799999999999999999999999999999999


Q ss_pred             EEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC
Q 006126          460 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  537 (660)
Q Consensus       460 ~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~  537 (660)
                      .++.++| +++.+++|+.|+..++||++.+     ...+ .+.+|.   +.|+++.|.|+|.-+++| .|++.++||++.
T Consensus       190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~q-tF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQ-TFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             EEEecCCCCCCeEEecccccceeeeeccCc-----ceeE-eecccc---cccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            9999999 9999999999999999999995     4445 677888   799999999999999995 889999999999


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR  617 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~  617 (660)
                      .+.+..+.......+|++++||..|++|++|..|..+.+||.-.++.+..+.       || ++.|.  ++..+| ||..
T Consensus       261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-------GH-eNRvS--cl~~s~-DG~a  329 (343)
T KOG0286|consen  261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-------GH-ENRVS--CLGVSP-DGMA  329 (343)
T ss_pred             CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-------cc-CCeeE--EEEECC-CCcE
Confidence            9999998766557899999999999999999999999999999999999887       65 55566  999999 8999


Q ss_pred             EEEEeCCCeEEEEe
Q 006126          618 IALGLTNGRVHVIE  631 (660)
Q Consensus       618 l~s~s~Dg~v~iw~  631 (660)
                      ++|||.|.++|||.
T Consensus       330 v~TgSWDs~lriW~  343 (343)
T KOG0286|consen  330 VATGSWDSTLRIWA  343 (343)
T ss_pred             EEecchhHheeecC
Confidence            99999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-38  Score=288.51  Aligned_cols=295  Identities=17%  Similarity=0.211  Sum_probs=250.2

Q ss_pred             ecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE
Q 006126          304 LLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF  382 (660)
Q Consensus       304 ~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  382 (660)
                      ++++  |++.|..++..+.+ +.+++++.|.++.+|++....                .+.|..++.+.  ||...|..+
T Consensus        10 tl~g--h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd----------------~~~G~~~r~~~--GHsH~v~dv   69 (315)
T KOG0279|consen   10 TLEG--HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD----------------IKYGVPVRRLT--GHSHFVSDV   69 (315)
T ss_pred             eecC--CCceEEEEEeecCCCceEEEcccceEEEEEEeccCc----------------cccCceeeeee--ccceEecce
Confidence            4554  99999999999874 678899999999999987653                34455554433  899999999


Q ss_pred             EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cC
Q 006126          383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQ  456 (660)
Q Consensus       383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~  456 (660)
                      ..+  |++.++++ |+++++||+.+|+..+.|.+|...|.+++|++|+ .+++|+.|++|++|++.. .+..++..  +.
T Consensus        70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~  148 (315)
T KOG0279|consen   70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR  148 (315)
T ss_pred             EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence            999  89999999 9999999999999999999999999999999999 999999999999999875 45544443  37


Q ss_pred             CCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEE
Q 006126          457 NRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY  533 (660)
Q Consensus       457 ~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iw  533 (660)
                      +.|+|+.|+|+  ..++++++.|++|++||+++      ..+.+...||+   +.++.+++||||...++ +.||.+.+|
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~Lw  219 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLW  219 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEE
Confidence            89999999997  68899999999999999998      33444677888   79999999999999999 599999999


Q ss_pred             eCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126          534 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       534 d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      |++.++.+..+   ++...|.+++|+|+.-+|+.+. +..|+|||+.++..+..+.+....+ +.......+++++|++ 
T Consensus       220 dL~~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-  293 (315)
T KOG0279|consen  220 DLNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-  293 (315)
T ss_pred             EccCCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-
Confidence            99999998887   3589999999999987777664 4559999999999988887543222 2223456788999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q 006126          614 EPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       614 d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ||..|.+|-.|+.|++|.+..
T Consensus       294 dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  294 DGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             CCcEEEeeecCCcEEEEEeec
Confidence            899999999999999998853

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.8e-36  Score=297.58  Aligned_cols=352  Identities=15%  Similarity=0.161  Sum_probs=269.0

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC----CcEEEEeccCC
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSN  343 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d----g~i~vw~~~~~  343 (660)
                      ..|||.|.|+|+|...|+|||||...   ...+...+++.  -.++|..++|++|++.|++.+..    |.+.+||-.+.
T Consensus        65 AkySPsG~yiASGD~sG~vRIWdtt~---~~hiLKnef~v--~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S  139 (603)
T KOG0318|consen   65 AKYSPSGFYIASGDVSGKVRIWDTTQ---KEHILKNEFQV--LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS  139 (603)
T ss_pred             EEeCCCceEEeecCCcCcEEEEeccC---cceeeeeeeee--cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence            48999999999999999999999974   23343333433  47899999999999999988773    45667775433


Q ss_pred             ceeee--------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126          344 KQSLE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF  400 (660)
Q Consensus       344 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw  400 (660)
                      --...                    ..+.+.++.+|+-..-++...  ...|..-|.|+.|+  |.++++++ ||+|.+|
T Consensus       140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s--~r~HskFV~~VRysPDG~~Fat~gsDgki~iy  217 (603)
T KOG0318|consen  140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS--FREHSKFVNCVRYSPDGSRFATAGSDGKIYIY  217 (603)
T ss_pred             cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec--ccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence            22221                    233444455555322222221  22688999999999  99999999 9999999


Q ss_pred             ECCCCeEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee--------------------------
Q 006126          401 SLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--------------------------  450 (660)
Q Consensus       401 d~~~~~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~--------------------------  450 (660)
                      |-.+|+.+..+.   +|.+.|.+++|+||+ .+++++.|.+++|||+.++++++                          
T Consensus       218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS  297 (603)
T KOG0318|consen  218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS  297 (603)
T ss_pred             cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence            999999999998   899999999999999 99999999999999998665432                          


Q ss_pred             -----------------EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec------eee-----------
Q 006126          451 -----------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------KFL-----------  496 (660)
Q Consensus       451 -----------------~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~------~~~-----------  496 (660)
                                       .+.||...|+++..+|++++|++|+.||.|.-||..++..-+.      ..+           
T Consensus       298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~  377 (603)
T KOG0318|consen  298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL  377 (603)
T ss_pred             cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence                             3468999999999999999999999999999999987643210      000           


Q ss_pred             ---------eee-------------eeccCC---------------------------------CCCCeEEEEEecCCcE
Q 006126          497 ---------HSF-------------QTGLVP---------------------------------ETTIVNHIQFHPDQIH  521 (660)
Q Consensus       497 ---------~~~-------------~~~~~~---------------------------------~~~~v~~~~~sp~~~~  521 (660)
                               ..+             ..+++|                                 ..-...+++++|++..
T Consensus       378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~  457 (603)
T KOG0318|consen  378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE  457 (603)
T ss_pred             EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence                     000             000000                                 0123456889999999


Q ss_pred             EEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          522 LLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       522 l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      +++ +.|+.|+||.+..+..........|..+|++++||||+.|||+|...+.|.+||+.+.+.....-       +-|.
T Consensus       458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------~FHt  530 (603)
T KOG0318|consen  458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------AFHT  530 (603)
T ss_pred             EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------eeee
Confidence            999 59999999999765544433334589999999999999999999999999999999987633221       1114


Q ss_pred             cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ..+.  +++|+| +..++||||-|-.|.||++....
T Consensus       531 akI~--~~aWsP-~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  531 AKIN--CVAWSP-NNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             eeEE--EEEeCC-CceEEEeccccceEEEEEccChh
Confidence            4455  999999 88999999999999999998754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-36  Score=308.37  Aligned_cols=328  Identities=20%  Similarity=0.308  Sum_probs=267.4

Q ss_pred             eeEecCCCCEEEEEeCC-CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          267 ESTSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .+.|+..|.+||.|+.. |++-||++..    ....   |+..||...+.++++||||+++|||+.||.|+|||..++- 
T Consensus       312 t~~~N~tGDWiA~g~~klgQLlVweWqs----EsYV---lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-  383 (893)
T KOG0291|consen  312 TVSFNSTGDWIAFGCSKLGQLLVWEWQS----ESYV---LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-  383 (893)
T ss_pred             EEEecccCCEEEEcCCccceEEEEEeec----ccee---eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-
Confidence            35888899999999876 9999999973    2222   4446799999999999999999999999999988765543 


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYF  421 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v  421 (660)
                                          +..+..  .|+..|+.+.|+  ++.+++.+ ||+|+.||+...+..++|..+. ....|+
T Consensus       384 --------------------C~vTFt--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  384 --------------------CFVTFT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV  441 (893)
T ss_pred             --------------------EEEEec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence                                333222  699999999999  88999999 9999999999999999998554 456899


Q ss_pred             EEcCCC-eEEEEeCCC-eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          422 ILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      +..|.| .+.+|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|+++|.|.+|++||+-...    ....++
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----~~vEtl  517 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----GTVETL  517 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC----ceeeeE
Confidence            999999 888888887 79999999999999999999999999999999999999999999999986631    122212


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCC------------------CCCCeEEEEEcc
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK------------------MDLPITYATYSC  560 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~------------------~~~~v~~~~~s~  560 (660)
                      ...     ..+..++|+|+|+.+++ ..||.|.+||...+..+..+.+..                  ....++.+++|+
T Consensus       518 ~i~-----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa  592 (893)
T KOG0291|consen  518 EIR-----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA  592 (893)
T ss_pred             eec-----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence            222     46999999999999999 599999999998766654443211                  246789999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCeeEEEeeccccc-------------------------------------CCC------
Q 006126          561 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------------------------------QPG------  597 (660)
Q Consensus       561 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-------------------------------------~~g------  597 (660)
                      ||.+|++|+..+.|.||++.++-+++.+......                                     .+|      
T Consensus       593 DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdl  672 (893)
T KOG0291|consen  593 DGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDL  672 (893)
T ss_pred             CCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCc
Confidence            9999999999999999999998877766542211                                     011      


Q ss_pred             ---CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          598 ---TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       598 ---h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                         +....|.+..+.|+| .|+-+|.++..| |.||.+.+.
T Consensus       673 ssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~~  711 (893)
T KOG0291|consen  673 SSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDTT  711 (893)
T ss_pred             cccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCCc
Confidence               112356788999999 799999998887 778887654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.8e-36  Score=305.33  Aligned_cols=341  Identities=14%  Similarity=0.175  Sum_probs=275.9

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce--
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ--  345 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~--  345 (660)
                      +.||.|.++|++|+.|-++++|++..   ...+....+.  ||.+.|..+-|..+...+++.+.||.+.+|.......  
T Consensus       151 i~Ws~DSr~l~~gsrD~s~rl~~v~~---~k~~~~~~l~--gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~  225 (893)
T KOG0291|consen  151 IDWSDDSRLLVTGSRDLSARLFGVDG---NKNLFTYALN--GHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPEL  225 (893)
T ss_pred             EEeccCCceEEeccccceEEEEEecc---ccccceEecc--CCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccc
Confidence            49999999999999999999999986   2334444454  4999999999999999999999999999999871100  


Q ss_pred             --------------------ee------e--------eeccce-------------------eEEEecCCCCceeeeccc
Q 006126          346 --------------------SL------E--------EENVNM-------------------ESQLYQPSSKLVMTNDIA  372 (660)
Q Consensus       346 --------------------~~------~--------~~~~~~-------------------~~~~~~~~~~~~~~~~~~  372 (660)
                                          ..      .        ..+...                   ...+|+..+-.++..+. 
T Consensus       226 ~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS-  304 (893)
T KOG0291|consen  226 DKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS-  304 (893)
T ss_pred             ccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee-
Confidence                                00      0        000000                   11233333333333222 


Q ss_pred             CCCCCCeEEEEEe--CCEEEEEeC--CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126          373 ADPKDSISCFALR--GSHLFSASG--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK  447 (660)
Q Consensus       373 ~~h~~~v~~v~~s--~~~l~s~~d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~  447 (660)
                       -...+|..++|+  |++|+.|+.  |++-||+.++...+...++|...+++++++||| ++++|+.||.|+|||..+|-
T Consensus       305 -is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf  383 (893)
T KOG0291|consen  305 -ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF  383 (893)
T ss_pred             -cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence             134678899999  999999993  799999999998898899999999999999999 99999999999999999999


Q ss_pred             eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e
Q 006126          448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H  526 (660)
Q Consensus       448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~  526 (660)
                      |..+|..|+..|+.+.|+..|+.+++.+.||+|+.||+.....     .+ .+....+  ....+++..|.|..+++| .
T Consensus       384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----fR-Tft~P~p--~QfscvavD~sGelV~AG~~  455 (893)
T KOG0291|consen  384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----FR-TFTSPEP--IQFSCVAVDPSGELVCAGAQ  455 (893)
T ss_pred             EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-----ee-eecCCCc--eeeeEEEEcCCCCEEEeecc
Confidence            9999999999999999999999999999999999999988543     33 2222222  567889999999999885 5


Q ss_pred             cC-cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-eeEEEeecccccCCCCcCcccc
Q 006126          527 EG-QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       527 d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                      |. .|.+|++++|+.+..+.+  |.++|.+++|+|+|..|++|++|.+|++||+-.. ..+..+..         .+.  
T Consensus       456 d~F~IfvWS~qTGqllDiLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sd--  522 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSD--  522 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccc--
Confidence            54 799999999999999876  7999999999999999999999999999998654 23344432         222  


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ++.++|+| ||+.+|+++-||.|.+||+..+..
T Consensus       523 vl~vsfrP-dG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  523 VLAVSFRP-DGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             eeEEEEcC-CCCeEEEEEecceEEEEEhhhcee
Confidence            55999999 899999999999999999987754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-37  Score=290.82  Aligned_cols=271  Identities=20%  Similarity=0.284  Sum_probs=241.7

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .|.|+-..+++++.|++|++||..+    +++.. .|.+  |++.|..++|+..|++|++++.|-.+++||.++...   
T Consensus       115 ~~hp~~~~v~~as~d~tikv~D~~t----g~~e~-~LrG--Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~---  184 (406)
T KOG0295|consen  115 IFHPSEALVVSASEDATIKVFDTET----GELER-SLRG--HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR---  184 (406)
T ss_pred             eeccCceEEEEecCCceEEEEEccc----hhhhh-hhhc--cccceeEEEEecCccEEEecCCccchhheeHHHHHH---
Confidence            6788888999999999999999985    55533 3544  999999999999999999999999999999765321   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP  425 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  425 (660)
                                       +++...  +|...|.+++|-  |+++++++ |.+|+.|++.+|-++.++.+|...|..+..+.
T Consensus       185 -----------------c~ks~~--gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~  245 (406)
T KOG0295|consen  185 -----------------CIKSLI--GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ  245 (406)
T ss_pred             -----------------HHHHhc--CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence                             222222  799999999999  99999999 99999999999999999999999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC---------------CCEEEEEeCCCcEEEEEcCCCe
Q 006126          426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---------------~~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      || ++++++.|.++++|-+.++++...++.|..+|-|++|.|.               +.++.+++.|++|++||+.++.
T Consensus       246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~  325 (406)
T KOG0295|consen  246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM  325 (406)
T ss_pred             CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence            99 9999999999999999999999999999999999999663               2589999999999999999963


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg  568 (660)
                           ++- ...+|.   .+|..++|+|.|+||++ +.|+++++||++++++..++..  |...++++.|..+..++++|
T Consensus       326 -----cL~-tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a--h~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  326 -----CLF-TLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA--HEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             -----EEE-EEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC--CcceeEEEecCCCCceEEec
Confidence                 444 467888   79999999999999999 5889999999999999999874  68999999999999999999


Q ss_pred             ecCCeEEEEEC
Q 006126          569 CKSGHVKVFDT  579 (660)
Q Consensus       569 ~~dg~I~iwd~  579 (660)
                      +-|..+++|.-
T Consensus       395 sVdqt~KvwEc  405 (406)
T KOG0295|consen  395 SVDQTVKVWEC  405 (406)
T ss_pred             cccceeeeeec
Confidence            99999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-36  Score=274.87  Aligned_cols=286  Identities=16%  Similarity=0.219  Sum_probs=234.2

Q ss_pred             cccCCCC-CCceeecCCCCceeeEecCC-CCEEEEEeCCCcEEEEeccCcC-CCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126          247 ASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSG  323 (660)
Q Consensus       247 ~~~g~~~-v~~~~~~~~~~~~~~~~spd-g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V~~~~~spdg  323 (660)
                      +++||.. |..+           ...+. -..+++++.|.++.+|++.... +.+... ..+.  ||...|..++.++||
T Consensus        10 tl~gh~d~Vt~l-----------a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~-r~~~--GHsH~v~dv~~s~dg   75 (315)
T KOG0279|consen   10 TLEGHTDWVTAL-----------AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV-RRLT--GHSHFVSDVVLSSDG   75 (315)
T ss_pred             eecCCCceEEEE-----------EeecCCCceEEEcccceEEEEEEeccCccccCcee-eeee--ccceEecceEEccCC
Confidence            4566666 4443           44444 5688999999999999997532 122222 2354  499999999999999


Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF  400 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw  400 (660)
                      ++.++++.|+++++||+.+++.                     .+.+.  ||...|.+++|+  +..+++|+ |.+|++|
T Consensus        76 ~~alS~swD~~lrlWDl~~g~~---------------------t~~f~--GH~~dVlsva~s~dn~qivSGSrDkTiklw  132 (315)
T KOG0279|consen   76 NFALSASWDGTLRLWDLATGES---------------------TRRFV--GHTKDVLSVAFSTDNRQIVSGSRDKTIKLW  132 (315)
T ss_pred             ceEEeccccceEEEEEecCCcE---------------------EEEEE--ecCCceEEEEecCCCceeecCCCcceeeee
Confidence            9999999999999999887643                     11111  899999999999  77999999 9999999


Q ss_pred             ECCCCeEEEEEcC--CCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126          401 SLETFQTLATFAN--PPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       401 d~~~~~~~~~~~~--~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      ++.. .+..++..  +...|.|+.|+|+  . .|++++.|++|++||+++-+....+.+|++.++.++++|||..+++|+
T Consensus       133 nt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg  211 (315)
T KOG0279|consen  133 NTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG  211 (315)
T ss_pred             eecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence            9985 44444443  3789999999998  4 999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC------
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM------  549 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~------  549 (660)
                      .||.+.+||++.++.     +.  ..+|.   ..|.+++|+|+...|+.+.+..|+|||+.++.++..+....-      
T Consensus       212 kdg~~~LwdL~~~k~-----ly--sl~a~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~  281 (315)
T KOG0279|consen  212 KDGEAMLWDLNEGKN-----LY--SLEAF---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKA  281 (315)
T ss_pred             CCceEEEEEccCCce-----eE--eccCC---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccccccc
Confidence            999999999999653     33  22333   589999999999888888888899999999998887765321      


Q ss_pred             -CCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          550 -DLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       550 -~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                       .....+++|++||..|++|..|+.|++|.+.
T Consensus       282 ~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  282 GDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence             2345678999999999999999999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.5e-36  Score=276.65  Aligned_cols=281  Identities=14%  Similarity=0.195  Sum_probs=243.0

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      .||++.|..+.|+|+|.+||+||.|..|.+|++.....           ..|-.           .+|.++|..+.|.  
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~~l-----------kgHsgAVM~l~~~~d  101 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-----------NFWVL-----------KGHSGAVMELHGMRD  101 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-----------ceeee-----------ccccceeEeeeeccC
Confidence            45999999999999999999999999999999665543           12221           1799999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL  462 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l  462 (660)
                      ++.+++++ |.+|+.||+++|++.+.+++|..-|+++.-+.-|  ++.+|+.|+++++||+++...++++. .+..++++
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv  180 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV  180 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence            88999999 9999999999999999999999999999866666  88899999999999999998888876 56789999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC----
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT----  537 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~----  537 (660)
                      .|..++..+++|+-|+.|++||++..     ..+. +..||.   ..|+.+..+|+|.++.+ +.|.++++||++-    
T Consensus       181 ~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~-~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~  251 (338)
T KOG0265|consen  181 GFKDTSDQVISGGIDNDIKVWDLRKN-----DGLY-TLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS  251 (338)
T ss_pred             EecccccceeeccccCceeeeccccC-----cceE-Eeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence            99999999999999999999999883     3444 678998   69999999999999999 8999999999874    


Q ss_pred             CceeeeecCCCCC--CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126          538 LNHTSQLVPDKMD--LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP  615 (660)
Q Consensus       538 ~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~  615 (660)
                      .+++..+.++.|.  .....++|+|++..+-+|+.|..+++||......+..++       || ...|+  ++.|+| ..
T Consensus       252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-------Gh-~gsvn--~~~Fhp-~e  320 (338)
T KOG0265|consen  252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-------GH-YGSVN--EVDFHP-TE  320 (338)
T ss_pred             CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-------Cc-ceeEE--EeeecC-CC
Confidence            4557778776554  445678999999999999999999999999888777776       66 33344  999999 68


Q ss_pred             CEEEEEeCCCeEEEEe
Q 006126          616 NRIALGLTNGRVHVIE  631 (660)
Q Consensus       616 ~~l~s~s~Dg~v~iw~  631 (660)
                      .+|.+++.|.+|++=+
T Consensus       321 ~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  321 PIILSCSSDKTIYLGE  336 (338)
T ss_pred             cEEEEeccCceeEeec
Confidence            8999999999998743

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.4e-34  Score=280.82  Aligned_cols=340  Identities=13%  Similarity=0.084  Sum_probs=267.8

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC-CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~-~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +.|+|||.++++++.||++.+||-.+    ++.... |. ..+|.+.|.+++|+||++.+++++.|.+++|||+.+.+..
T Consensus       196 VRysPDG~~Fat~gsDgki~iyDGkt----ge~vg~-l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  196 VRYSPDGSRFATAGSDGKIYIYDGKT----GEKVGE-LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             EEECCCCCeEEEecCCccEEEEcCCC----ccEEEE-ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            68999999999999999999999885    332221 33 3459999999999999999999999999999999887654


Q ss_pred             ee----------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEE
Q 006126          347 LE----------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS  401 (660)
Q Consensus       347 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd  401 (660)
                      ..                      ..+....+..+++..........  ||...|+++..+  +.+|++|+ ||.|.-|+
T Consensus       271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~--GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS--GHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec--ccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence            32                      23344455677777766554443  899999999999  88999999 99999999


Q ss_pred             CCCCeEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc------------e-------------------e
Q 006126          402 LETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK------------T-------------------K  449 (660)
Q Consensus       402 ~~~~~~~~~~-~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~------------~-------------------~  449 (660)
                      ..+|..-+.. +.|...|.+++.+..+.+++++.|.++++.++..+.            +                   +
T Consensus       349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i  428 (603)
T KOG0318|consen  349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI  428 (603)
T ss_pred             cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence            9998877665 689999999998887778888999999999764211            0                   0


Q ss_pred             eEeecc--------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126          450 AKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  521 (660)
Q Consensus       450 ~~~~~~--------~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  521 (660)
                      ..++.+        .-...+++++|++..+++|+.|+.|++|.+..+.....   . ....|.   ++|+++++|||+.+
T Consensus       429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee---~-~~~~h~---a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE---A-KLLEHR---AAITDVAYSPDGAY  501 (603)
T ss_pred             EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce---e-eeeccc---CCceEEEECCCCcE
Confidence            111211        12356889999999999999999999999988653211   1 234565   79999999999999


Q ss_pred             EEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          522 LLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       522 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      |+++ ..+.+.+||+.+.+.... ...-|...|.+++|+|+..++|+|+-|-.|.||+++.....-.+..      .| .
T Consensus       502 la~~Da~rkvv~yd~~s~~~~~~-~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn------AH-~  573 (603)
T KOG0318|consen  502 LAAGDASRKVVLYDVASREVKTN-RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN------AH-L  573 (603)
T ss_pred             EEEeccCCcEEEEEcccCceecc-eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc------cc-c
Confidence            9997 789999999988776322 2224799999999999999999999999999999987654433321      23 3


Q ss_pred             cccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ..++  .+.|--  ...+++.|.|..|++|.+.
T Consensus       574 ~gVn--~v~wld--e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  574 GGVN--SVAWLD--ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             cCce--eEEEec--CceEEeccCcceeEEeccc
Confidence            3355  899964  5789999999999999874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.3e-35  Score=260.91  Aligned_cols=273  Identities=14%  Similarity=0.171  Sum_probs=225.3

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFS  401 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd  401 (660)
                      -+|+++|.|.+|++|...++.+                     ..+..  ...+.|+.+...  ++.||+++...|++||
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C---------------------~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD   67 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGIC---------------------SRTIQ--HPDSQVNRLEITPDKKDLAAAGNQHVRLYD   67 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeE---------------------EEEEe--cCccceeeEEEcCCcchhhhccCCeeEEEE
Confidence            4789999999999887665544                     33332  345679999998  7788888899999999


Q ss_pred             CCCCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC
Q 006126          402 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA  478 (660)
Q Consensus       402 ~~~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  478 (660)
                      +.++.  ++.++.+|...|+++.|..+| .+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|
T Consensus        68 ~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg  146 (311)
T KOG0315|consen   68 LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG  146 (311)
T ss_pred             ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence            98865  588899999999999999999 99999999999999999866666665 789999999999999999999999


Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc------eeeeecCCCCCC
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------HTSQLVPDKMDL  551 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~------~~~~~~~~~~~~  551 (660)
                      .|++||+.......  .+  +++..    ..|.++...|||+++++. ..|..++|++-+..      ++..++  .|.+
T Consensus       147 ~irvWDl~~~~c~~--~l--iPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~  216 (311)
T KOG0315|consen  147 NIRVWDLGENSCTH--EL--IPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNG  216 (311)
T ss_pred             cEEEEEccCCcccc--cc--CCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccc
Confidence            99999998843211  11  12222    479999999999999996 77999999987643      333343  4789


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEECCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                      .+..+.+|||+++|++++.|.+++||+.++. +....+.       || ...++  .++||. |+.||+||+.|+.+++|
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------gh-~rWvW--dc~FS~-dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------GH-QRWVW--DCAFSA-DGEYLVTASSDHTARLW  285 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------cC-CceEE--eeeecc-CccEEEecCCCCceeec
Confidence            9999999999999999999999999999987 3334443       44 45666  999999 89999999999999999


Q ss_pred             eCCCCc--eeccC
Q 006126          631 EPLESE--VEWGK  641 (660)
Q Consensus       631 ~~~~~~--~~w~~  641 (660)
                      ++..++  ..|..
T Consensus       286 ~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  286 DLSAGKEVRQYQG  298 (311)
T ss_pred             ccccCceeeecCC
Confidence            999998  45544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.6e-35  Score=299.48  Aligned_cols=240  Identities=13%  Similarity=0.205  Sum_probs=209.6

Q ss_pred             CCCCCeEEEE-Ee-CCEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC
Q 006126          374 DPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       374 ~h~~~v~~v~-~s-~~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~  444 (660)
                      ||...|.++. |+ |.+|++|+ |.++++|.++.+    .++....+|...|.+++++..+  .|+++|.|+++++|++.
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~  442 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP  442 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence            7999999999 55 87999999 999999988443    2445567999999999998888  99999999999999987


Q ss_pred             CCce-----e----eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126          445 TKKT-----K----AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  515 (660)
Q Consensus       445 ~~~~-----~----~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  515 (660)
                      ..+.     +    .+...|...|+|++++|+.+.+++||.|.+.++|++...     .... .+.||.   ..|.++.|
T Consensus       443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~-vLsGH~---RGvw~V~F  513 (775)
T KOG0319|consen  443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLG-VLSGHT---RGVWCVSF  513 (775)
T ss_pred             CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-----eEEE-EeeCCc---cceEEEEe
Confidence            6211     1    123459999999999999999999999999999999962     2333 778998   69999999


Q ss_pred             ecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccccc
Q 006126          516 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA  594 (660)
Q Consensus       516 sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~  594 (660)
                      +|..+.+++ +.|++|+||.+.+..+++++.+  |...|..+.|-.+|+.|++++.||-|++|+++++++...+..|   
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---  588 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---  588 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---
Confidence            999999999 6999999999999999999976  7999999999999999999999999999999999999999844   


Q ss_pred             CCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          595 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                           .+.+|  +++-+| +..+++||+.||.|.+|.=.+.
T Consensus       589 -----~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  589 -----NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             -----cceeE--EEeecC-ccceeEecCCCeEEEEeecCcH
Confidence                 67788  888899 7889999999999999975543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=257.96  Aligned_cols=279  Identities=14%  Similarity=0.167  Sum_probs=231.1

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      -+|++++.|.+||+|...    ++.|... ++.  ..+.|..+...||+++||+++. ..|++||+.++...        
T Consensus        11 viLvsA~YDhTIRfWqa~----tG~C~rT-iqh--~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--------   74 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQAL----TGICSRT-IQH--PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--------   74 (311)
T ss_pred             eEEEeccCcceeeeeehh----cCeEEEE-Eec--CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--------
Confidence            478999999999999998    4666653 332  3678999999999999888764 57888887766431        


Q ss_pred             eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE
Q 006126          355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA  430 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~  430 (660)
                                 .+..+  ++|...|.++.|.  |+++++|+ ||+++|||++...+.+.++ +..+|+++..+|+. .|+
T Consensus        75 -----------Pv~t~--e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   75 -----------PVATF--EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             -----------ceeEE--eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence                       11111  2799999999999  99999999 9999999999977766665 55999999999999 999


Q ss_pred             EEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec-eeeeeeeeccCCCCC
Q 006126          431 FGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-KFLHSFQTGLVPETT  508 (660)
Q Consensus       431 s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~  508 (660)
                      +|..+|.|++||+....+...+.. ....|.++...|||++++.+...|..++|++-+...... .++. .+..|.   +
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~-k~~ah~---~  216 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH-KFQAHN---G  216 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh-heeccc---c
Confidence            999999999999998877666543 457899999999999999999999999999987543222 2333 455677   6


Q ss_pred             CeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE
Q 006126          509 IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC  586 (660)
Q Consensus       509 ~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~  586 (660)
                      .+..+.+|||+++|++ +.|.+++||+.++. +.-..+.  .|...+..++||.||.||++|+.|+.+++|++..++.+.
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            8999999999999999 69999999999887 3334443  468999999999999999999999999999999999888


Q ss_pred             Eee
Q 006126          587 QIN  589 (660)
Q Consensus       587 ~~~  589 (660)
                      .+.
T Consensus       295 qy~  297 (311)
T KOG0315|consen  295 QYQ  297 (311)
T ss_pred             ecC
Confidence            876

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=258.93  Aligned_cols=289  Identities=18%  Similarity=0.203  Sum_probs=232.9

Q ss_pred             CCCCCeEEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          309 SFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       309 ~h~~~V~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      +|+++|+.++|+|- |..||++|.|+.|++|+...+..             |.     + +..+.++|+..|++++|+  
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~~-----c-k~vld~~hkrsVRsvAwsp~   72 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------WT-----C-KTVLDDGHKRSVRSVAWSPH   72 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------EE-----E-EEeccccchheeeeeeecCC
Confidence            48999999999998 89999999999999999764221             11     1 122334799999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC---ceeeEeeccCCC
Q 006126          386 GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR  458 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~---~~~~~~~~~~~~  458 (660)
                      |++|++++ |.++.||.-..  .+++.++.+|...|.|++|+++| +||+++.|++|.||.+..+   ++...+..|...
T Consensus        73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD  152 (312)
T ss_pred             CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence            99999999 99999998764  57889999999999999999999 9999999999999998744   567889999999


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT  537 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~  537 (660)
                      |..+.|+|...+|++++.|.+|++|+-..+.  ...+.+ .+.+|.   +.|.+++|+|.|..|++ +.|++++||-..+
T Consensus       153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~-tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQ-TLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             ccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEE-EecCcc---ceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence            9999999999999999999999999877321  123444 567777   68999999999999998 5899999998752


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR  617 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~  617 (660)
                           .+. ..|...++.+.|.  ...|++++.|+.|++|.-...-....+.........| ...|+  ++.|+|...++
T Consensus       227 -----~~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVN--sV~w~p~~~~~  295 (312)
T KOG0645|consen  227 -----DLS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVN--SVQWNPKVSNR  295 (312)
T ss_pred             -----Ccc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccc--eEEEcCCCCCc
Confidence                 222 2468899999998  5689999999999999876432222222111111123 33455  99999955789


Q ss_pred             EEEEeCCCeEEEEeCC
Q 006126          618 IALGLTNGRVHVIEPL  633 (660)
Q Consensus       618 l~s~s~Dg~v~iw~~~  633 (660)
                      |++|++||.|++|.+.
T Consensus       296 L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  296 LASGGDDGIVNFWELE  311 (312)
T ss_pred             eeecCCCceEEEEEec
Confidence            9999999999999874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5e-34  Score=268.99  Aligned_cols=331  Identities=14%  Similarity=0.192  Sum_probs=270.1

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      .+..|..|.. ++.+           +.+|+.+++++|+.|..-.+|+..+    +. ....+.  +|++.|.++.||.|
T Consensus        56 S~~tF~~H~~svFav-----------sl~P~~~l~aTGGgDD~AflW~~~~----ge-~~~elt--gHKDSVt~~~Fshd  117 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAV-----------SLHPNNNLVATGGGDDLAFLWDIST----GE-FAGELT--GHKDSVTCCSFSHD  117 (399)
T ss_pred             ceeehhhcCCceEEE-----------EeCCCCceEEecCCCceEEEEEccC----Cc-ceeEec--CCCCceEEEEEccC
Confidence            4556777776 5665           8999999999999999999999985    33 223354  49999999999999


Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI  399 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~i  399 (660)
                      |.+||||+.+|.|.||+..++..            .|...           ..-..+.-+.|+  +..|+.|+ ||.+..
T Consensus       118 gtlLATGdmsG~v~v~~~stg~~------------~~~~~-----------~e~~dieWl~WHp~a~illAG~~DGsvWm  174 (399)
T KOG0296|consen  118 GTLLATGDMSGKVLVFKVSTGGE------------QWKLD-----------QEVEDIEWLKWHPRAHILLAGSTDGSVWM  174 (399)
T ss_pred             ceEEEecCCCccEEEEEcccCce------------EEEee-----------cccCceEEEEecccccEEEeecCCCcEEE
Confidence            99999999999999999877764            12110           234557778888  88899999 999999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCC
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGAD  477 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d  477 (660)
                      |.+.++...+.+.+|..++++=.|.|+| +++++..||+|++||+.+++++.++.+ ......++.++..+..++.|+.+
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence            9999988899999999999999999999 999999999999999999999988874 34567889999999999999999


Q ss_pred             CcEEEEEcCCCeeeecee--eeeeeeccCCCCCCeEEEEEec---CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 006126          478 AQLCVWDAVGWKKLCSKF--LHSFQTGLVPETTIVNHIQFHP---DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL  551 (660)
Q Consensus       478 g~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  551 (660)
                      +.+++-+..+|+.+....  ...+...+.   ..+.++.+.|   .-.+.|+ +-||+|.|||+...+....+   .|..
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~  328 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHED  328 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCC
Confidence            999999988877543222  111222333   3444555544   4455666 49999999999887776655   3688


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      .|+.+.|-+ ..+|++++.||.|+.||.++|++...+.       || ...|.  +++.+| +.++++|+|.|++.+||+
T Consensus       329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-------GH-~~~Il--~f~ls~-~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-------GH-QMGIL--DFALSP-QKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe-------cC-chhee--EEEEcC-CCcEEEEecCCCeEEEEe
Confidence            899999998 7899999999999999999999999987       66 44455  999999 899999999999999998


Q ss_pred             CC
Q 006126          632 PL  633 (660)
Q Consensus       632 ~~  633 (660)
                      +.
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            74

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.8e-36  Score=291.77  Aligned_cols=283  Identities=17%  Similarity=0.249  Sum_probs=240.5

Q ss_pred             CCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126          308 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  385 (660)
Q Consensus       308 ~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-  385 (660)
                      +||+..|.++.|.| .+.+|++++.|+.|+||++                  |+  .+.+++++.  ||..+|.+++|+ 
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v------------------y~--~~~~lrtf~--gH~k~Vrd~~~s~  268 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV------------------YD--DRRCLRTFK--GHRKPVRDASFNN  268 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEE------------------ec--Ccceehhhh--cchhhhhhhhccc
Confidence            45999999999999 8999999999999999985                  44  344666555  899999999999 


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                       |..+++++ |+.|++||+++|++...|.. ...++|+.|+|++  .|++|+.|+.|+.||+++++.++.+..|-+.|..
T Consensus       269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  269 CGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD  347 (503)
T ss_pred             cCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence             88999999 99999999999999998853 3457899999999  8999999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--  538 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--  538 (660)
                      +.|-++|+++++.+.|+++++|+.+.+-.+     +.+...+.   ....++..+|++.++++ +.|+.|.++.+...  
T Consensus       348 i~F~~~g~rFissSDdks~riWe~~~~v~i-----k~i~~~~~---hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  348 ITFVDEGRRFISSSDDKSVRIWENRIPVPI-----KNIADPEM---HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             eEEccCCceEeeeccCccEEEEEcCCCccc-----hhhcchhh---ccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            999999999999999999999999885432     21111111   34678999999999999 89999999986532  


Q ss_pred             -ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126          539 -NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR  617 (660)
Q Consensus       539 -~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~  617 (660)
                       .....+.++.-.+.-..+.|||||.+|++|..||.+.+||.++.+++..+..+        +.+  ++.+.|||.....
T Consensus       420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--------~~~--ci~v~wHP~e~Sk  489 (503)
T KOG0282|consen  420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--------DQP--CIGVDWHPVEPSK  489 (503)
T ss_pred             cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--------Ccc--eEEEEecCCCcce
Confidence             12234544333566778999999999999999999999999999999988743        333  5589999988899


Q ss_pred             EEEEeCCCeEEEEe
Q 006126          618 IALGLTNGRVHVIE  631 (660)
Q Consensus       618 l~s~s~Dg~v~iw~  631 (660)
                      +|||+.||.|++|+
T Consensus       490 vat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  490 VATCGWDGLIKIWD  503 (503)
T ss_pred             eEecccCceeEecC
Confidence            99999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.2e-36  Score=287.29  Aligned_cols=278  Identities=17%  Similarity=0.218  Sum_probs=239.3

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ..+|..+.|.|+|+.|++|+..|.+.+|+...-..                  ..++     ..|..+|+++.|+  +.+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF------------------Etil-----QaHDs~Vr~m~ws~~g~w  152 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF------------------ETIL-----QAHDSPVRTMKWSHNGTW  152 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeH------------------HHHh-----hhhcccceeEEEccCCCE
Confidence            56899999999999999999999999998532211                  0112     2799999999999  889


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                      +++|+ +|.|++|+..-. .++.+.. |...|++++|+|++ .|+++++||+|+|||....+....+.+|.-.|.+++|+
T Consensus       153 miSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  153 MISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH  231 (464)
T ss_pred             EEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence            99999 899999998743 4445554 45899999999998 99999999999999999888888999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~  544 (660)
                      |....+++++.|..|++||.++++++     . ...+|.   ..|..+.|+|++++|++ |.|..++++|+++.+.++++
T Consensus       232 P~kgLiasgskDnlVKlWDprSg~cl-----~-tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~  302 (464)
T KOG0284|consen  232 PTKGLIASGSKDNLVKLWDPRSGSCL-----A-TLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY  302 (464)
T ss_pred             CccceeEEccCCceeEeecCCCcchh-----h-hhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence            99999999999999999999997654     3 345666   68999999999999999 79999999999988888888


Q ss_pred             cCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          545 VPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                      .+  |...|+++.|+| ...++.+|+.||.|..|.+...+++..+..      +| +..|+  +++||| -|.+|++|+.
T Consensus       303 r~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~------AH-d~~iw--sl~~hP-lGhil~tgsn  370 (464)
T KOG0284|consen  303 RG--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP------AH-DGEIW--SLAYHP-LGHILATGSN  370 (464)
T ss_pred             hc--chhhheeeccccccccceeeccCCCceEEEeccccccccCCCc------cc-cccee--eeeccc-cceeEeecCC
Confidence            75  799999999998 457888999999999999986666655543      44 66677  999999 7999999999


Q ss_pred             CCeEEEEeCC
Q 006126          624 NGRVHVIEPL  633 (660)
Q Consensus       624 Dg~v~iw~~~  633 (660)
                      |.++++|.-.
T Consensus       371 d~t~rfw~r~  380 (464)
T KOG0284|consen  371 DRTVRFWTRN  380 (464)
T ss_pred             CcceeeeccC
Confidence            9999999754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-35  Score=274.50  Aligned_cols=279  Identities=18%  Similarity=0.191  Sum_probs=246.3

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ||..+|+.+-|+|+-..+++++.|++|++||..+++.                     ...+  .||...|..+.|+  |
T Consensus       106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------e~~L--rGHt~sv~di~~~a~G  162 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------ERSL--RGHTDSVFDISFDASG  162 (406)
T ss_pred             ccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------hhhh--hccccceeEEEEecCc
Confidence            3899999999999999999999999999998776654                     2211  1899999999999  9


Q ss_pred             CEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          387 SHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      .++++++ |=.+++||..+ .++++.+.+|...|.++.|-|.| .|++++.|.+|+.|++.+|-++.++.+|...|..+.
T Consensus       163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~  242 (406)
T KOG0295|consen  163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR  242 (406)
T ss_pred             cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence            9999999 77799999987 67788888999999999999999 999999999999999999999999999999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---------------CcEEEE-Eec
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------QIHLLS-IHE  527 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------------~~~l~~-~~d  527 (660)
                      .+.||..+++++.|.++++|-+.++++     .. ...+|.   ..|-+++|-|.               +.++.+ +.|
T Consensus       243 v~~DGti~As~s~dqtl~vW~~~t~~~-----k~-~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  243 VNQDGTIIASCSNDQTLRVWVVATKQC-----KA-ELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             ecCCeeEEEecCCCceEEEEEeccchh-----hh-hhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            999999999999999999999998432     12 345666   57888888762               246666 599


Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      ++|++||+.++.++.++.+  |...|..++|+|.|+||+++.+|+++++||++++++...+.++        .+  .+++
T Consensus       314 ktIk~wdv~tg~cL~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--------~h--fvt~  381 (406)
T KOG0295|consen  314 KTIKIWDVSTGMCLFTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--------EH--FVTS  381 (406)
T ss_pred             ceEEEEeccCCeEEEEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--------cc--eeEE
Confidence            9999999999999999976  7999999999999999999999999999999999999998854        33  3559


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          608 IAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      ++|+. +..+++||+-|.++++|..
T Consensus       382 lDfh~-~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  382 LDFHK-TAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EecCC-CCceEEeccccceeeeeec
Confidence            99998 6889999999999999974

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-34  Score=299.44  Aligned_cols=259  Identities=17%  Similarity=0.243  Sum_probs=230.3

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee----------eeccceeEEEecCCCCceeeecccCCCCCCeE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE----------EENVNMESQLYQPSSKLVMTNDIAADPKDSIS  380 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  380 (660)
                      ...+.|+.|++|+..||.|-.|..|++|.+...+....          ..+.+....+.|..++.....+.  ||.++|+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~--GH~GPVy  455 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY--GHSGPVY  455 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee--cCCCcee
Confidence            56899999999999999999999999999986542221          22233334556665555544444  8999999


Q ss_pred             EEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126          381 CFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ  456 (660)
Q Consensus       381 ~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~  456 (660)
                      .+.|+  .++|++++ |++|++|.+.+..++-.+++|..+|+++.|+|-| +||+++.|++.++|.....++++.+.+|.
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl  535 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL  535 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence            99999  88999999 9999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeC
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  535 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~  535 (660)
                      +.|.|+.|+|++.++++||.|.++++||+.+|.     .++ ++.||.   ++|.+++|||+|++|+++ .|+.|.+||+
T Consensus       536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VR-iF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVR-IFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             cccceEEECCcccccccCCCCceEEEEEcCCCc-----EEE-EecCCC---CceEEEEEcCCCceEeecccCCcEEEEEc
Confidence            999999999999999999999999999999964     344 778999   799999999999999994 9999999999


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      .+++.+..+.+  |.+.|.++.||.||..||+|+.|+.|++||+..-
T Consensus       607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999876  6999999999999999999999999999998753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.1e-34  Score=276.45  Aligned_cols=275  Identities=15%  Similarity=0.145  Sum_probs=240.8

Q ss_pred             CCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126          263 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       263 ~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~  342 (660)
                      .+....+|+.+|..||+|+.||.++||+..+    .....  |  +.|.++|.++.|+.+|.||++++.|+++.+||..+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~t--l--~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLIST--L--GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhh--h--hccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence            3444469999999999999999999999974    44443  3  23999999999999999999999999999988765


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY  420 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~  420 (660)
                      +..                     .+...  -|..+-..|.|- ...+++++ |+.|+++.+....++.++.+|.+.|.+
T Consensus       308 g~~---------------------~q~f~--~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a  364 (524)
T KOG0273|consen  308 GTV---------------------KQQFE--FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA  364 (524)
T ss_pred             ceE---------------------EEeee--eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence            543                     22111  366766788998 88888888 999999999999999999999999999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC---------CEEEEEeCCCcEEEEEcCCCee
Q 006126          421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKK  490 (660)
Q Consensus       421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~---------~~l~s~s~dg~i~vwd~~~~~~  490 (660)
                      +.|+|.| +|++++.|++++||.+....+.+.+.+|...|..+.|+|+|         ..+++++.|++|++||+..+. 
T Consensus       365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-  443 (524)
T KOG0273|consen  365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-  443 (524)
T ss_pred             EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-
Confidence            9999999 99999999999999999999999999999999999999965         478999999999999999954 


Q ss_pred             eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126          491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                          ++. .+..|.   .+|++++|+|+|+++++| .||.|.+|+.++++.++.+.+   .+.|..++|+.+|+.|..+.
T Consensus       444 ----~i~-~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  444 ----PIH-TLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACA  512 (524)
T ss_pred             ----eeE-eeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEe
Confidence                455 455677   699999999999999995 999999999999999999975   67799999999999999999


Q ss_pred             cCCeEEEEECC
Q 006126          570 KSGHVKVFDTS  580 (660)
Q Consensus       570 ~dg~I~iwd~~  580 (660)
                      .|+.+.+-|++
T Consensus       513 sd~~vcvldlr  523 (524)
T KOG0273|consen  513 SDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEec
Confidence            99999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2e-35  Score=281.95  Aligned_cols=273  Identities=18%  Similarity=0.219  Sum_probs=236.7

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+|+.|++|+..|.+.+|+...    -.+..+ +  ..|.++|.++.|+++|.++++|+.+|.|++|+..-+..  
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWNg~~----fnFEti-l--QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV--  172 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWNGTS----FNFETI-L--QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV--  172 (464)
T ss_pred             EEEcCCCceeEeecccccEEEecCce----eeHHHH-h--hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh--
Confidence            59999999999999999999999752    111111 2  33999999999999999999999999999997543321  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                         ..  +...|...|++++|+  +..+++++ ||+|+|||....+..+.+.+|.-.|.+++|+
T Consensus       173 -------------------k~--~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  173 -------------------KI--IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH  231 (464)
T ss_pred             -------------------HH--hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence                               10  111466999999999  88899999 8999999999999888999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      |.. .|++|+.|..|++||.++|.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++     .+.+. ...+|
T Consensus       232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~-~~r~H  305 (464)
T KOG0284|consen  232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELF-TYRGH  305 (464)
T ss_pred             CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHH-Hhhcc
Confidence            999 999999999999999999999999999999999999999999999999999999999996     34444 56788


Q ss_pred             CCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          504 VPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      .   ..++++.|+|-..-|++  |.||.|..|.+...+++..+.. .|...|++++|+|-|..|++|+.|.++++|...
T Consensus       306 k---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  306 K---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             h---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            7   69999999997665555  5999999999986777777654 689999999999999999999999999999754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.3e-34  Score=268.20  Aligned_cols=289  Identities=17%  Similarity=0.208  Sum_probs=247.8

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      .||.+.|.|+++.|-.+++++|+.|++++|||+.+++...                     ++.  ||...|..++++  
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---------------------tlt--Ghi~~vr~vavS~r  204 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---------------------TLT--GHIETVRGVAVSKR  204 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---------------------eec--chhheeeeeeeccc
Confidence            4599999999999999999999999999999988776522                     111  799999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      ..|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.||..+|..+.
T Consensus       205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence            78999999 9999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeee
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~  543 (660)
                      +.|-...+++||.|++|++||++.|+.     .. ....|.   ..|.+++.+|....++++....|+-|++..|..++.
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt-----~~-tlt~hk---ksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKT-----MI-TLTHHK---KSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN  355 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCce-----eE-eeeccc---ceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence            999888999999999999999999653     22 344555   589999999999999987777899999999999888


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                      +.+  |...|.+++...|| ++++|+++|.+.+||.++|-..+....  ....|.-.....+.+.+|.. .|..|+||..
T Consensus       356 lsg--h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t--~vqpGSl~sEagI~as~fDk-tg~rlit~ea  429 (460)
T KOG0285|consen  356 LSG--HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT--IVQPGSLESEAGIFASCFDK-TGSRLITGEA  429 (460)
T ss_pred             ccc--ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc--cccCCccccccceeEEeecc-cCceEEeccC
Confidence            654  68899999987765 788999999999999999866555432  12224322222344888988 7999999999


Q ss_pred             CCeEEEEeCCC
Q 006126          624 NGRVHVIEPLE  634 (660)
Q Consensus       624 Dg~v~iw~~~~  634 (660)
                      |.+|++|+-..
T Consensus       430 dKtIk~~keDe  440 (460)
T KOG0285|consen  430 DKTIKMYKEDE  440 (460)
T ss_pred             CcceEEEeccc
Confidence            99999998654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.4e-33  Score=297.19  Aligned_cols=288  Identities=25%  Similarity=0.321  Sum_probs=244.4

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |...|.++.|+|+|+++++++.|+.+++|+......                   ......  .+|...|.+++|+  +.
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------~~~~~l--~~h~~~v~~~~fs~d~~  216 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------NLLREL--SGHTRGVSDVAFSPDGS  216 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------hhhccc--cccccceeeeEECCCCc
Confidence            588999999999999999999999999998744431                   011111  2799999999999  78


Q ss_pred             EEEEEe-CCcEEEEEC-CCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          388 HLFSAS-GGKISIFSL-ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~-~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      ++++++ |++|++||+ ..+..++++.+|...|++++|+|+| .+++|+.|++|++||+++++++..+.+|.+.|++++|
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence            999999 999999999 6668999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeee
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~  543 (660)
                      ++++++|++++.|+.|++||+.++...   .+. ...++.... .++++.|+|++.+++++ .|+.+++||+..+..+..
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~-~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLK-LLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCcee---eee-cccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence            999999999999999999999997632   223 334444311 68999999999999995 788999999999999988


Q ss_pred             ecCCCCC-CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          544 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       544 ~~~~~~~-~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      +.++... ..+.+...++.+.++++|+.|+.|++||+.++..+..+.       ||....  +..++|+| ..+++++++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~--~~~~~~~~-~~~~~~s~s  441 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAA--VSDLSSHP-TENLIASSS  441 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCc--eeccccCC-CcCeeeecC
Confidence            8774322 245556667899999999999999999999988888877       442222  44899999 789999998


Q ss_pred             --CCCeEEEEeCC
Q 006126          623 --TNGRVHVIEPL  633 (660)
Q Consensus       623 --~Dg~v~iw~~~  633 (660)
                        .|+.+++|...
T Consensus       442 ~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  442 FEGDGLIRLWKYD  454 (456)
T ss_pred             cCCCceEEEecCC
Confidence              79999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5e-34  Score=294.48  Aligned_cols=240  Identities=17%  Similarity=0.221  Sum_probs=209.2

Q ss_pred             CceeeEecCCCCEEEEEeCCCcEEEEeccCcC-----CCcce---------------------eeeecCCCCCCCCeEEE
Q 006126          264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-----EPSEC---------------------RTLLLPDNSFGGRVVRL  317 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~-----~~~~~---------------------~~~~l~~~~h~~~V~~~  317 (660)
                      ....+.||+|++.||.|-.|..|++|.+...+     ....+                     ...++  .||.++|..+
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L--~GH~GPVyg~  457 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL--YGHSGPVYGC  457 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe--ecCCCceeee
Confidence            34446999999999999999999999987311     00000                     01112  4699999999


Q ss_pred             EEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C
Q 006126          318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G  394 (660)
Q Consensus       318 ~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d  394 (660)
                      .|+|+.++|+++|.|+++++|.+.+....          ..|.             ||..+|+++.|+  |-|+|+++ |
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~----------V~y~-------------GH~~PVwdV~F~P~GyYFatas~D  514 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCL----------VIYK-------------GHLAPVWDVQFAPRGYYFATASHD  514 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeE----------EEec-------------CCCcceeeEEecCCceEEEecCCC
Confidence            99999999999999999999998776541          1122             899999999999  99999999 9


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  473 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  473 (660)
                      ++.++|......+.+.+.+|.+.|.|+.|+|+. ++++||.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++
T Consensus       515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            999999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT  537 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~  537 (660)
                      |+.||.|.+||+.+++.     +. ...+|.   +.|.++.|+.+|..|++ |.|++|++||+..
T Consensus       595 g~ed~~I~iWDl~~~~~-----v~-~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGSL-----VK-QLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cccCCcEEEEEcCCCcc-----hh-hhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            99999999999999643     33 456776   79999999999999999 6999999999864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-32  Score=281.63  Aligned_cols=344  Identities=15%  Similarity=0.157  Sum_probs=275.5

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ...+||+++|++++....+++|++..    +++... +.. .|+.||..++|+|.|..+++|+.||.++|||+..+....
T Consensus        68 ~~l~~d~~~L~~a~rs~llrv~~L~t----gk~irs-wKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th  141 (775)
T KOG0319|consen   68 LALTPDEEVLVTASRSQLLRVWSLPT----GKLIRS-WKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH  141 (775)
T ss_pred             eeecCCccEEEEeeccceEEEEEccc----chHhHh-Hhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence            48899999999999999999999986    333221 211 299999999999999999999999999999987655432


Q ss_pred             e--e----------------------------------------------------------------------------
Q 006126          348 E--E----------------------------------------------------------------------------  349 (660)
Q Consensus       348 ~--~----------------------------------------------------------------------------  349 (660)
                      .  +                                                                            
T Consensus       142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~  221 (775)
T KOG0319|consen  142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL  221 (775)
T ss_pred             EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence            1  0                                                                            


Q ss_pred             ----------------------------------eccceeEEEecCCCCc------------------------------
Q 006126          350 ----------------------------------ENVNMESQLYQPSSKL------------------------------  365 (660)
Q Consensus       350 ----------------------------------~~~~~~~~~~~~~~~~------------------------------  365 (660)
                                                        .+.+...+.||.+++.                              
T Consensus       222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta  301 (775)
T KOG0319|consen  222 VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA  301 (775)
T ss_pred             hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence                                              0000011344443332                              


Q ss_pred             -------------eeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-
Q 006126          366 -------------VMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-  427 (660)
Q Consensus       366 -------------~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-  427 (660)
                                   +.+.+.  |..+.|.+++|-   .++|+.++ .+.+++|+..+..+. .+.+|...|.+++...+| 
T Consensus       302 eQnl~l~d~~~l~i~k~iv--G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~  378 (775)
T KOG0319|consen  302 EQNLFLYDEDELTIVKQIV--GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGD  378 (775)
T ss_pred             cceEEEEEccccEEehhhc--CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCc
Confidence                         222222  456778888888   47899999 799999999887776 788999999999977888 


Q ss_pred             eEEEEeCCCeEEEEeCCCC----ceeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeee----e
Q 006126          428 LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLH----S  498 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~  498 (660)
                      +|++|+.|+++++|.++.+    .++....+|.+.|.+++++..+ .+|+++|.|+++++|++...+.... ++.    .
T Consensus       379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~  457 (775)
T KOG0319|consen  379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRY  457 (775)
T ss_pred             EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-cceehhhH
Confidence            9999999999999977443    3455668899999999997644 6899999999999999987322111 111    1


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                      ....|.   ..|++++++|+.+.+++ |.|.+.+||+++......++.+  |...|.++.|+|..+.+++++.|++|+||
T Consensus       458 t~~aHd---KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  458 TERAHD---KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIW  532 (775)
T ss_pred             HHHhhc---ccccceEecCCCceEEecccccceeeecccCceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEE
Confidence            334576   68999999999999999 5999999999998888888876  79999999999999999999999999999


Q ss_pred             ECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          578 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      .+.+..++.++.       ||...   +..+.|-. ++..|+||+.||-|++|++.+++|
T Consensus       533 ~is~fSClkT~e-------GH~~a---Vlra~F~~-~~~qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  533 SISTFSCLKTFE-------GHTSA---VLRASFIR-NGKQLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             Eeccceeeeeec-------Cccce---eEeeeeee-CCcEEEeccCCCcEEEEeccchhh
Confidence            999999999998       66333   55899988 899999999999999999999876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-33  Score=247.50  Aligned_cols=276  Identities=12%  Similarity=0.101  Sum_probs=234.0

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.++|..+.|+-||+|.++++.|.++++|+.                     ..|.+++++.  +|...|..++.+  +.
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp---------------------~rg~liktYs--ghG~EVlD~~~s~Dns   72 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP---------------------LRGALIKTYS--GHGHEVLDAALSSDNS   72 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCCceEEeecc---------------------cccceeeeec--CCCceeeecccccccc
Confidence            8999999999999999999999999987764                     4445555544  899999999988  77


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC--ceeeEeeccCCCeEEEE
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLA  463 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~--~~~~~~~~~~~~v~~l~  463 (660)
                      .+++|+ |..|.+||+.+|+..+.+.+|...|+.+.|+.+. .+++|+.|.++++||.++.  ++++.+......|.++.
T Consensus        73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~  152 (307)
T KOG0316|consen   73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID  152 (307)
T ss_pred             ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence            888888 9999999999999999999999999999999999 9999999999999998764  67888888888999998


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~  542 (660)
                      .+  +..+++|+.||+++.||++.|....      -..+     .+|+++.|++|++..++ +.|+++++.|-.+|+.++
T Consensus       153 v~--~heIvaGS~DGtvRtydiR~G~l~s------Dy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~  219 (307)
T KOG0316|consen  153 VA--EHEIVAGSVDGTVRTYDIRKGTLSS------DYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK  219 (307)
T ss_pred             ec--ccEEEeeccCCcEEEEEeecceeeh------hhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence            85  5789999999999999999975322      1222     57999999999999888 599999999999999999


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .+.++.....-..++++.....+++|++||.|++||+.....+..+..         ...+.+.+++++|+ -.-|+++.
T Consensus       220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~---------~~~v~v~dl~~hp~-~~~f~~A~  289 (307)
T KOG0316|consen  220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV---------VSTVIVTDLSCHPT-MDDFITAT  289 (307)
T ss_pred             HhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc---------CCceeEEeeecccC-ccceeEec
Confidence            998865555666788888889999999999999999999998888764         23455779999995 55566664


Q ss_pred             CCCeEEEEeC
Q 006126          623 TNGRVHVIEP  632 (660)
Q Consensus       623 ~Dg~v~iw~~  632 (660)
                       ++.+..|.-
T Consensus       290 -~~~~~~~~~  298 (307)
T KOG0316|consen  290 -GHGDLFWYQ  298 (307)
T ss_pred             -CCceeceee
Confidence             445666654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=8.6e-33  Score=254.80  Aligned_cols=301  Identities=14%  Similarity=0.157  Sum_probs=240.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC-ceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      |+.++.+.+|||||.++|+|+.|..|+|.|++..-....    ...+..-+...+ .+++++.  .|...|+++.|+  .
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre  184 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRE  184 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhccCCcccCCceEeehh--hccCcccceeecchh
Confidence            999999999999999999999999999999873211000    000000111111 2344443  699999999999  7


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe---eccCCCe
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRI  459 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~---~~~~~~v  459 (660)
                      ..|++++ |++|++||.......+.++  ....+|.++.|+|.| .+++|....++++||+++.++...-   .+|.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            8899999 9999999997654444333  345689999999999 9999999999999999998876543   3589999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL  538 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~  538 (660)
                      +++.+++.|+..++++.||.|++||--+     .+++.++...|..  +.|.+..|..+|+|+++ |.|..+++|.+.++
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS-----~rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVS-----NRCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeecccc-----HHHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            9999999999999999999999999877     4566667777876  89999999999999999 69999999999999


Q ss_pred             ceeeeecCCCC---CCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          539 NHTSQLVPDKM---DLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       539 ~~~~~~~~~~~---~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      +++..+.+.+.   ...-+...|+....|++.-.+ .+.+.-||.+++..+..+..      || .+.+.  .+..+| .
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl------gH-n~a~R--~i~HSP-~  407 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL------GH-NGAVR--WIVHSP-V  407 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc------CC-CCCce--EEEeCC-C
Confidence            99999987532   233455778888888887654 37799999999887776654      77 44455  899999 7


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q 006126          615 PNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +.-+++||+|-..|+|--.
T Consensus       408 ~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  408 EPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceeeecccceeeeeeec
Confidence            8899999999999999643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.3e-32  Score=247.08  Aligned_cols=272  Identities=15%  Similarity=0.215  Sum_probs=222.5

Q ss_pred             EecCC-CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          269 TSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       269 ~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +|+|- |..||+++.|..|+||+... ...-.|+.. +. .+|+..|..++|+|.|++|+++|.|.++.||.-..+..  
T Consensus        21 awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~v-ld-~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef--   95 (312)
T KOG0645|consen   21 AWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTV-LD-DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF--   95 (312)
T ss_pred             EeccCCceEEEeecCCceEEEEecCC-CCcEEEEEe-cc-ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce--
Confidence            88998 89999999999999999974 222334432 43 36999999999999999999999999999997544332  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC---CeEEEEEcCCCCCeEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET---FQTLATFANPPPIATYF  421 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~---~~~~~~~~~~~~~v~~v  421 (660)
                                         ......+||...|.|++|+  |++||+++ |+.|-||.+..   .++...++.|...|..+
T Consensus        96 -------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   96 -------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             -------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence                               1122334899999999999  99999999 99999999974   45778889999999999


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCC---CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  497 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  497 (660)
                      .|+|.. +|++++.|.+|++|.-.   .-.+.+++.+|.+.|.+++|+|.|..|++++.|++++||-..+.         
T Consensus       157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---------  227 (312)
T KOG0645|consen  157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---------  227 (312)
T ss_pred             EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---------
Confidence            999998 99999999999999866   33678999999999999999999999999999999999986641         


Q ss_pred             eeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC------ceeeeecCCCCCCCeEEEEEccC-CCEEEEEe
Q 006126          498 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCD-GKCIYVSC  569 (660)
Q Consensus       498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~  569 (660)
                       +..-|.   ..++.+.|. + -.|++ +.|+.|++|.-...      +.+... ...|...|+++.|.|. .+.|++|+
T Consensus       228 -~~~~~s---r~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~  300 (312)
T KOG0645|consen  228 -LSGMHS---RALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGG  300 (312)
T ss_pred             -cchhcc---cceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecC
Confidence             223344   578899999 4 45666 69999999976532      111111 2347889999999995 68999999


Q ss_pred             cCCeEEEEECC
Q 006126          570 KSGHVKVFDTS  580 (660)
Q Consensus       570 ~dg~I~iwd~~  580 (660)
                      .||.|++|.+.
T Consensus       301 DDG~v~~W~l~  311 (312)
T KOG0645|consen  301 DDGIVNFWELE  311 (312)
T ss_pred             CCceEEEEEec
Confidence            99999999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.4e-32  Score=307.98  Aligned_cols=318  Identities=13%  Similarity=0.150  Sum_probs=241.9

Q ss_pred             CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCC
Q 006126          283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS  362 (660)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  362 (660)
                      +|.+++|+............-.+  ..|.+.|.+++|+|+|+++|+|+.|+.|+||+......              +..
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--------------~~~  520 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--------------DGR  520 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--------------ccc
Confidence            56788888763111001110011  23899999999999999999999999999999754211              000


Q ss_pred             C-CceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCC
Q 006126          363 S-KLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD  435 (660)
Q Consensus       363 ~-~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d  435 (660)
                      . .......   .+...+.+++|+   +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+| ++ .|++|+.|
T Consensus       521 ~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D  597 (793)
T PLN00181        521 DIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD  597 (793)
T ss_pred             ccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence            0 0001111   245678999997   67899999 99999999999999999999999999999997 66 99999999


Q ss_pred             CeEEEEeCCCCceeeEeeccCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126          436 SSILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ  514 (660)
Q Consensus       436 ~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  514 (660)
                      +.|++||++++..+..+..+ ..|.++.|+ ++|.++++|+.||.|++||++++.    .++. ...+|.   ..|.++.
T Consensus       598 g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~-~~~~h~---~~V~~v~  668 (793)
T PLN00181        598 GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLC-TMIGHS---KTVSYVR  668 (793)
T ss_pred             CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccce-EecCCC---CCEEEEE
Confidence            99999999999988888754 679999995 579999999999999999998743    1233 345777   6899999


Q ss_pred             EecCCcEEEE-EecCcEEEEeCCCC------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126          515 FHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ  587 (660)
Q Consensus       515 ~sp~~~~l~~-~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~  587 (660)
                      |. ++.++++ +.|++|++||++.+      .++..+.+  |...+..++|+|++.+|++|+.|+.|++|+......+..
T Consensus       669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s  745 (793)
T PLN00181        669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS  745 (793)
T ss_pred             Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence            97 6677777 69999999999743      45666654  688899999999999999999999999999887765544


Q ss_pred             eecccc-cCCC--CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          588 INLTAY-AQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       588 ~~~~~~-~~~g--h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      +..... ...|  .......+.+++|+| ++.+|++|+.||+|+||++
T Consensus       746 ~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        746 YKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence            332110 0000  001122355999999 8999999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-31  Score=268.27  Aligned_cols=278  Identities=23%  Similarity=0.323  Sum_probs=238.8

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.++|.+++|+|+++++++++.||.+.+|++.+...                     ....  ..|...+..+.|+  +
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------~~~~--~~~~~~i~~~~~~~~~   63 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------LRTL--KGHTGPVRDVAASADG   63 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------EEEE--ecCCcceeEEEECCCC
Confidence            3899999999999999999999999999999875532                     1111  1578888899999  6


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      +++++++ +|.|++||+.+++....+..|...+.++.|+|++ .+++++.|+.|++||+.+++....+..|...+.++.|
T Consensus        64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  143 (289)
T cd00200          64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF  143 (289)
T ss_pred             CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence            6899998 9999999999988888898999999999999999 8888888999999999999989889889999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~  543 (660)
                      +|++.++++++.|+.|++||+++++.     +. ....|.   ..+.++.|+|+++.+++ +.++.|++||+++++.+..
T Consensus       144 ~~~~~~l~~~~~~~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~  214 (289)
T cd00200         144 SPDGTFVASSSQDGTIKLWDLRTGKC-----VA-TLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT  214 (289)
T ss_pred             cCcCCEEEEEcCCCcEEEEEcccccc-----ce-eEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence            99999999888899999999987443     22 233554   58999999999988887 4799999999998888877


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                      +..  |...+.+++|+|++.++++++.||.|++||+.+++....+..       | ...+.  +++|+| ++.++++++.
T Consensus       215 ~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-------~-~~~i~--~~~~~~-~~~~l~~~~~  281 (289)
T cd00200         215 LRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-------H-TNSVT--SLAWSP-DGKRLASGSA  281 (289)
T ss_pred             hhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-------c-CCcEE--EEEECC-CCCEEEEecC
Confidence            754  577999999999999999998899999999999888877762       2 33344  999999 7899999999


Q ss_pred             CCeEEEEe
Q 006126          624 NGRVHVIE  631 (660)
Q Consensus       624 Dg~v~iw~  631 (660)
                      ||.|++|+
T Consensus       282 d~~i~iw~  289 (289)
T cd00200         282 DGTIRIWD  289 (289)
T ss_pred             CCeEEecC
Confidence            99999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.9e-32  Score=276.02  Aligned_cols=358  Identities=15%  Similarity=0.158  Sum_probs=279.9

Q ss_pred             CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126          243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  321 (660)
Q Consensus       243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp  321 (660)
                      ...-.|+||.. |..+           .|...|..|++|+.|+.|.+||+-     ++.-.+.|.  ||.+.|+.+-|..
T Consensus        98 ~~~~tfngHK~AVt~l-----------~fd~~G~rlaSGskDt~IIvwDlV-----~E~Gl~rL~--GHkd~iT~~~F~~  159 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTL-----------KFDKIGTRLASGSKDTDIIVWDLV-----GEEGLFRLR--GHKDSITQALFLN  159 (888)
T ss_pred             ceeeeecccccceEEE-----------EEcccCceEeecCCCccEEEEEec-----cceeeEEee--cchHHHhHHhccC
Confidence            34445666665 4444           899999999999999999999996     344444464  4999999999999


Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeee-------------------eeccceeE--------------------------
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLE-------------------EENVNMES--------------------------  356 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~-------------------~~~~~~~~--------------------------  356 (660)
                      +.+++++.|.|+.|++||+++..+...                   ....+...                          
T Consensus       160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            889999999999999999876543211                   00000000                          


Q ss_pred             --------------------------------------------------------------------------------
Q 006126          357 --------------------------------------------------------------------------------  356 (660)
Q Consensus       357 --------------------------------------------------------------------------------  356 (660)
                                                                                                      
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence                                                                                            


Q ss_pred             ---------------------------EEecCCC-Cc------eeeecccCCCCCCeEEEEEe-C-CEEEEEeCCcEEEE
Q 006126          357 ---------------------------QLYQPSS-KL------VMTNDIAADPKDSISCFALR-G-SHLFSASGGKISIF  400 (660)
Q Consensus       357 ---------------------------~~~~~~~-~~------~~~~~~~~~h~~~v~~v~~s-~-~~l~s~~dg~I~iw  400 (660)
                                                 ..|.... +.      ....+...||...|.+++++ + ..+++|+.+.+++|
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW  399 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW  399 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence                                       0111000 00      01112234899999999999 3 44555568999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      +..+.++++++...  -+.+..|.|.+ ++++|...|.+.+||+.+...+.+.+.|.+.|++++.+||++.+++||.|.+
T Consensus       400 n~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt  477 (888)
T KOG0306|consen  400 NRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT  477 (888)
T ss_pred             EccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence            99999999999754  67889999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCeeee--c-eeee----eeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCC
Q 006126          480 LCVWDAVGWKKLC--S-KFLH----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL  551 (660)
Q Consensus       480 i~vwd~~~~~~~~--~-~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  551 (660)
                      |++||..--....  . +.+.    +...- .   ..|.++.+||||++|+++ -|++++||-+.+.+..-.+.+  |.-
T Consensus       478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~---ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG--HkL  551 (888)
T KOG0306|consen  478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-E---DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG--HKL  551 (888)
T ss_pred             EEEEeEEEEeccCcccceeeeeccceEEec-c---ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc--ccc
Confidence            9999975311100  0 0010    01111 1   579999999999999998 999999999999988777765  799


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      ||.++.+|||++.++||+.|..|+||-++-|.+...+-       +| ++.|.  +|.|-| ....+.+||.|+.|+-||
T Consensus       552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-------AH-dDSvm--~V~F~P-~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-------AH-DDSVM--SVQFLP-KTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-------cc-cCcee--EEEEcc-cceeEEEecCcceEEeec
Confidence            99999999999999999999999999999999888876       34 44444  999999 788999999999999998


Q ss_pred             CCCCce
Q 006126          632 PLESEV  637 (660)
Q Consensus       632 ~~~~~~  637 (660)
                      -..-+.
T Consensus       621 g~kFe~  626 (888)
T KOG0306|consen  621 GEKFEE  626 (888)
T ss_pred             hhhhhh
Confidence            766543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2e-33  Score=251.71  Aligned_cols=297  Identities=15%  Similarity=0.151  Sum_probs=250.2

Q ss_pred             cCCCCCCCCeEEEEEec---CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE
Q 006126          305 LPDNSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC  381 (660)
Q Consensus       305 l~~~~h~~~V~~~~~sp---dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  381 (660)
                      +..+||+.+|..++|||   +|-+|++++.||.-.+-+                     -.+|.-+.++.  ||.+.|++
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~---------------------g~tgdwigtfe--ghkgavw~   64 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN---------------------GDTGDWIGTFE--GHKGAVWS   64 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhcc---------------------CCCCCcEEeee--ccCcceee
Confidence            44478999999999995   888999999998765443                     34444444333  89999999


Q ss_pred             EEEe-C-CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccC
Q 006126          382 FALR-G-SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQ  456 (660)
Q Consensus       382 v~~s-~-~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~  456 (660)
                      .+.+ + ..-++++ |=+.++||.-+|..+..| .|..-|.+++|+.|. .|++|+.+..++|||++.. .+...+.+|.
T Consensus        65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght  143 (334)
T KOG0278|consen   65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT  143 (334)
T ss_pred             eecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence            9998 3 3456666 889999999999988887 477789999999999 9999999999999999865 3457788999


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  536 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~  536 (660)
                      +.|..+.|....+.+++.+.|++||+||.+++.......+.          ..|+++.++++|++|.++..+.|.+||..
T Consensus       144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------s~VtSlEvs~dG~ilTia~gssV~Fwdak  213 (334)
T KOG0278|consen  144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----------SPVTSLEVSQDGRILTIAYGSSVKFWDAK  213 (334)
T ss_pred             CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----------CCCcceeeccCCCEEEEecCceeEEeccc
Confidence            99999999998889999999999999999997655443333          57999999999999999999999999999


Q ss_pred             CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      +...++.+..   ...|.+.+++|+...+++|++|..++.||..+|+.+..+.      .|| -++|.  ||.|+| ||.
T Consensus       214 sf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh-~gpVh--cVrFSP-dGE  280 (334)
T KOG0278|consen  214 SFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGH-FGPVH--CVRFSP-DGE  280 (334)
T ss_pred             cccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCC-CCceE--EEEECC-CCc
Confidence            9999888865   6789999999999999999999999999999999887752      266 34555  999999 899


Q ss_pred             EEEEEeCCCeEEEEeCCCCce--eccCCCCcccc
Q 006126          617 RIALGLTNGRVHVIEPLESEV--EWGKLPFTDSR  648 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~~~--~w~~~~~~~~~  648 (660)
                      ..|+||.||+|+||....++.  .|....|.+.+
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~  314 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG  314 (334)
T ss_pred             eeeccCCCceEEEEEecCCCchhhccccChhhhc
Confidence            999999999999999887764  67777776554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.3e-32  Score=249.80  Aligned_cols=277  Identities=15%  Similarity=0.149  Sum_probs=229.5

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+|.++|+|+.|..|.+|+..+..+    ...++.  ||.+.|..+.|.+|++.++++|.|.+++.||.++++...
T Consensus        53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----N~~~lk--gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r  126 (338)
T KOG0265|consen   53 IKFHPDGSCFASGGSDRAIVLWNVYGDCE----NFWVLK--GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR  126 (338)
T ss_pred             EEECCCCCeEeecCCcceEEEEecccccc----ceeeec--cccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence            39999999999999999999999864211    112233  599999999999999999999999999999988776521


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                      .                       ..+|..-|+.+.-+  |. .+.+++ |+++++||+++...++++. ....++++.|
T Consensus       127 k-----------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f  182 (338)
T KOG0265|consen  127 K-----------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGF  182 (338)
T ss_pred             h-----------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEe
Confidence            1                       11688889988877  55 455666 8999999999888887764 3467899999


Q ss_pred             cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      ..++ .+.+|+-|+.|++||++.+.....+.||...|+.+..+|+|.++.+-+.|.++++||++..... ..++. ++.+
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~v~-if~g  260 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRCVK-IFQG  260 (338)
T ss_pred             cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC-CceEE-Eeec
Confidence            9999 9999999999999999999999999999999999999999999999999999999999874322 23344 5555


Q ss_pred             cCC-CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          503 LVP-ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       503 ~~~-~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      |.- .......++|+|+++.+.+ +.|..+++||......+..+.+  |.+.|.++.|+|...+|.+++.|.+|++=+
T Consensus       261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG--h~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG--HYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC--cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            431 0023456899999999998 5999999999988888888765  799999999999999999999999998743

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.6e-31  Score=282.68  Aligned_cols=278  Identities=18%  Similarity=0.197  Sum_probs=233.9

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|||+++++++.|+.+++|+......  ... ..+  .+|...|.+++|+|+|+++++++.|++++|||+....   
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~-~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~---  236 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKS--NLL-REL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG---  236 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccc--hhh-ccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC---
Confidence            59999999999999999999999964321  111 123  3599999999999999999999999999999983332   


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                       ..++.+.  +|...|++++|+  ++.+++|+ |++|++||+.++++.+.+.+|...|++++|+
T Consensus       237 -----------------~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  237 -----------------RNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             -----------------eEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence                             2333222  899999999999  88999999 9999999999999999999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCc--eeeEeeccCCC--eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      +++ .|++++.|+.|++||+.++.  ++..+.++...  ++++.|+|++.++++++.|+.+++||+..+...     . .
T Consensus       298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-----~-~  371 (456)
T KOG0266|consen  298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-----G-T  371 (456)
T ss_pred             CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----e-e
Confidence            999 99999999999999999998  56777776655  999999999999999999999999999985432     2 2


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC-CCCeEEEEEccCCCEEEEEe--cCCeEE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSC--KSGHVK  575 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~sg~--~dg~I~  575 (660)
                      ..+|......+.+..+++.++++++ +.|+.|++||+.++..+..+.+  | ...+..++++|..+++++++  .|+.++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~--h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~  449 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG--HSKAAVSDLSSHPTENLIASSSFEGDGLIR  449 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC--CCCCceeccccCCCcCeeeecCcCCCceEE
Confidence            3444420014455666889999999 4999999999999888888865  5 78899999999999999998  689999


Q ss_pred             EEECC
Q 006126          576 VFDTS  580 (660)
Q Consensus       576 iwd~~  580 (660)
                      +|...
T Consensus       450 ~w~~~  454 (456)
T KOG0266|consen  450 LWKYD  454 (456)
T ss_pred             EecCC
Confidence            99764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.7e-32  Score=239.25  Aligned_cols=242  Identities=16%  Similarity=0.233  Sum_probs=215.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK  449 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~  449 (660)
                      +++++|..+.|+  |+|.++++ |.+|++|++..|.+++++.+|...|..++.+.|+ .|++|+.|+.|.+||+.+|+.+
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~   94 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD   94 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence            689999999999  99999888 9999999999999999999999999999999999 9999999999999999999999


Q ss_pred             eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecC
Q 006126          450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG  528 (660)
Q Consensus       450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~  528 (660)
                      +.|.+|.+.|+.+.|+.+...+++|+.|.++++||.++..   ..+++ ++....   ..|.++...  +..|++ +.||
T Consensus        95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQ-ildea~---D~V~Si~v~--~heIvaGS~DG  165 (307)
T KOG0316|consen   95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQ-ILDEAK---DGVSSIDVA--EHEIVAGSVDG  165 (307)
T ss_pred             eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccc-hhhhhc---CceeEEEec--ccEEEeeccCC
Confidence            9999999999999999999999999999999999999854   35666 444433   478888876  455666 6999


Q ss_pred             cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126          529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      +++.||++.|.....+.    ..+|++++|++|++..++++-|+.+++.|-.+|+++..+.       || .+.-+-+.+
T Consensus       166 tvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-------Gh-kn~eykldc  233 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-------GH-KNMEYKLDC  233 (307)
T ss_pred             cEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-------cc-ccceeeeee
Confidence            99999999998766653    6789999999999999999999999999999999999887       66 444555677


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          609 AAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +++. ....+++|++||.|++||+..+..
T Consensus       234 ~l~q-sdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  234 CLNQ-SDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             eecc-cceeEEeccCCceEEEEEecccee
Confidence            8887 568999999999999999988765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3e-30  Score=259.03  Aligned_cols=270  Identities=24%  Similarity=0.288  Sum_probs=231.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+++++++++.||.+++|+..+.   .....  +.  +|...+..+.|+|+++++++++.||.+.+|++...+.  
T Consensus        15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~---~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~--   85 (289)
T cd00200          15 VAFSPDGKLLATGSGDGTIKVWDLETG---ELLRT--LK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC--   85 (289)
T ss_pred             EEEcCCCCEEEEeecCcEEEEEEeeCC---CcEEE--Ee--cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc--
Confidence            389999999999999999999999852   22222  22  2788999999999999999999999999999876432  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                         .....  .|...+.++.|+  +.++++++ +|.|.+||+.+++....+..|...+.++.|+
T Consensus        86 -------------------~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  144 (289)
T cd00200          86 -------------------VRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS  144 (289)
T ss_pred             -------------------eEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence                               11111  577889999999  57888888 9999999999999999998899999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      |++ .+++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||+++++.     +. ....|
T Consensus       145 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----~~-~~~~~  218 (289)
T cd00200         145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----LG-TLRGH  218 (289)
T ss_pred             CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----ec-chhhc
Confidence            999 888888899999999999999999999999999999999999999999999999999988443     22 22244


Q ss_pred             CCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          504 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      .   ..+.++.|+|++.+++++ .++.|++||+.+++....+..  |...+.+++|+|+++++++++.||.|++|+
T Consensus       219 ~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         219 E---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             C---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc--cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            4   589999999998888886 499999999998888888763  678999999999999999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=250.76  Aligned_cols=286  Identities=15%  Similarity=0.179  Sum_probs=243.8

Q ss_pred             cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126          245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG  323 (660)
Q Consensus       245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg  323 (660)
                      .++.+||.. |.+.           ++-|-.+++++|+.|++++|||+.    +++++. +|++  |...|..+++|+-.
T Consensus       144 ~rVi~gHlgWVr~v-----------avdP~n~wf~tgs~DrtikIwDla----tg~Lkl-tltG--hi~~vr~vavS~rH  205 (460)
T KOG0285|consen  144 YRVISGHLGWVRSV-----------AVDPGNEWFATGSADRTIKIWDLA----TGQLKL-TLTG--HIETVRGVAVSKRH  205 (460)
T ss_pred             hhhhhhccceEEEE-----------eeCCCceeEEecCCCceeEEEEcc----cCeEEE-eecc--hhheeeeeeecccC
Confidence            345667777 5554           888999999999999999999998    455553 4654  99999999999999


Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF  400 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw  400 (660)
                      .|+++++.|+.|+.||++.++.                     ++.+.  ||-..|+|++.+  -+.|++|+ |.++++|
T Consensus       206 pYlFs~gedk~VKCwDLe~nkv---------------------IR~Yh--GHlS~V~~L~lhPTldvl~t~grDst~RvW  262 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEYNKV---------------------IRHYH--GHLSGVYCLDLHPTLDVLVTGGRDSTIRVW  262 (460)
T ss_pred             ceEEEecCCCeeEEEechhhhh---------------------HHHhc--cccceeEEEeccccceeEEecCCcceEEEe
Confidence            9999999999999998876653                     33333  899999999999  78899999 9999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      |+++...+..+.+|..+|..+.+.|.+ .+++|+.|++|++||++.|+...++..|...|.+++.+|....+++++.| .
T Consensus       263 DiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-n  341 (460)
T KOG0285|consen  263 DIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-N  341 (460)
T ss_pred             eecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-c
Confidence            999999999999999999999999988 99999999999999999999999999999999999999999999988876 6


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC---C---CCCCCe
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP---D---KMDLPI  553 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~---~---~~~~~v  553 (660)
                      |+-|++-.|..     ++ ...+|.   +.|++++...||-++..+.+|.+.+||.++|-..+....   .   .....|
T Consensus       342 ik~w~~p~g~f-----~~-nlsgh~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI  412 (460)
T KOG0285|consen  342 IKQWKLPEGEF-----LQ-NLSGHN---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI  412 (460)
T ss_pred             ceeccCCccch-----hh-cccccc---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccce
Confidence            88999988543     33 356777   789999999988666667889999999998876554421   1   125678


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          554 TYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       554 ~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      ++.+|+..|..|++|..|.+|++|.-..
T Consensus       413 ~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  413 FASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             eEEeecccCceEEeccCCcceEEEeccc
Confidence            9999999999999999999999997653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-31  Score=266.92  Aligned_cols=275  Identities=17%  Similarity=0.248  Sum_probs=239.0

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |+..|.++.|+|...+++++-.+|.+.||+.++.....          -++             -..-+|++..|-  .+
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk----------sfe-------------V~~~PvRa~kfiaRkn   68 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK----------SFE-------------VSEVPVRAAKFIARKN   68 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeee----------eee-------------ecccchhhheeeeccc
Confidence            78999999999999999999999999999987775411          111             245678888888  78


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEE
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~  464 (660)
                      ++++|+ |..|++|+..+++.+..|..|..-|+|++.+|.. +++++++|-+|++||-+.+ .+.++|+||...|.+++|
T Consensus        69 Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   69 WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             eEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence            999999 8999999999999999999999999999999999 9999999999999998764 678999999999999999


Q ss_pred             eC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--cEEEEE-ecCcEEEEeCCCCce
Q 006126          465 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPTLNH  540 (660)
Q Consensus       465 sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~-~d~~i~iwd~~~~~~  540 (660)
                      +| |.+.+++++-|++|++|.+.+.     .+.. .+.+|.   ..|+++.+-+.|  .+|++| .|.+|+|||..+..|
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~-----~~nf-Tl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C  219 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSP-----HPNF-TLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC  219 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCC-----CCce-eeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence            99 6788999999999999999883     3334 456888   699999998754  688885 889999999999999


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      ++++.+  |...|..++|+|.-..+++|++||+|+||+..+.++...+...        -..++  |++-.+ .+..++.
T Consensus       220 V~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--------leRvW--~I~~~k-~~~~i~v  286 (794)
T KOG0276|consen  220 VQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--------LERVW--CIAAHK-GDGKIAV  286 (794)
T ss_pred             HHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--------CceEE--EEeecC-CCCeEEE
Confidence            999976  7899999999999999999999999999999999888877652        45577  898888 5667888


Q ss_pred             EeCCCeEEE
Q 006126          621 GLTNGRVHV  629 (660)
Q Consensus       621 ~s~Dg~v~i  629 (660)
                      |.+.|.|.|
T Consensus       287 G~Deg~i~v  295 (794)
T KOG0276|consen  287 GFDEGSVTV  295 (794)
T ss_pred             eccCCcEEE
Confidence            877776654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-31  Score=253.45  Aligned_cols=422  Identities=12%  Similarity=0.132  Sum_probs=284.6

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHhhh----------ccccccHHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHH
Q 006126           67 ELIYLIHQFLNEEEFKETLHKLEQE----------TRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQI  136 (660)
Q Consensus        67 e~~~lI~q~L~e~G~~~sa~~L~~E----------s~~~~~~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i  136 (660)
                      +-+++..|-+.+..+....++|-.-          +.+.++-..|.+....|...+|+..|+..          ..++.+
T Consensus        51 at~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~----------~~~lr~  120 (519)
T KOG0293|consen   51 ATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNP----------VLYLRK  120 (519)
T ss_pred             chHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcc----------hhhhhh
Confidence            5566666766667777776666432          22222356677777888888887776542          334456


Q ss_pred             HHHHHHHHhhhc----------cCCCCch-hhhhchhhhhhhhhccCcccccccCCCccchhHHHHHHh-----------
Q 006126          137 QRQKYLEAVDRQ----------QKLPSDF-AERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIK-----------  194 (660)
Q Consensus       137 ~~q~~lell~~~----------e~~p~~~-~~~~~~l~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~-----------  194 (660)
                      .+.+|.|+...-          +.+-..+ .+|.+++.++.+......++-++     -...-|++-++           
T Consensus       121 ~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~r-----RLehLl~qAv~~Q~d~cvyhns  195 (519)
T KOG0293|consen  121 NKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKR-----RLEHLLEQAVKYQRDSCVYHNS  195 (519)
T ss_pred             hHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChH-----HHHHHHHHHHHHHHhHhHHhcc
Confidence            667777765432          1221222 26777777766553222211100     00011111111           


Q ss_pred             -hhcceeeeeeeecCCCCCcccccccCccccchhhhccccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecC
Q 006126          195 -QIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLP  272 (660)
Q Consensus       195 -qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~sp  272 (660)
                       .++.+..+.|.+.. .                             .+....+++..|.. |.-+           .||+
T Consensus       196 ldsvsll~Dh~c~~~-q-----------------------------ip~qt~qil~~htdEVWfl-----------~FS~  234 (519)
T KOG0293|consen  196 LDSVSLLSDHFCGRL-Q-----------------------------IPSQTWQILQDHTDEVWFL-----------QFSH  234 (519)
T ss_pred             cchhhhhhhcccCcc-c-----------------------------CCchhhhhHhhCCCcEEEE-----------EEcC
Confidence             01222222121100 0                             01223455555555 4444           9999


Q ss_pred             CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeecc
Q 006126          273 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV  352 (660)
Q Consensus       273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~  352 (660)
                      +|++||+|+.|.+..||++.....-  -...++.  ||..+|..+.||||.+||++++.|..+.+||+.++..       
T Consensus       235 nGkyLAsaSkD~Taiiw~v~~d~~~--kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~-------  303 (519)
T KOG0293|consen  235 NGKYLASASKDSTAIIWIVVYDVHF--KLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL-------  303 (519)
T ss_pred             CCeeEeeccCCceEEEEEEecCcce--eeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchh-------
Confidence            9999999999999999998753221  1122354  4999999999999999999999999998888776654       


Q ss_pred             ceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCC-
Q 006126          353 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-  427 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~-  427 (660)
                                    ...+- .+|...+.+++|.  |..+++|+ |+++..||++. ......++. ...|.+++..+|| 
T Consensus       304 --------------~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  304 --------------RHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             --------------hhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCc
Confidence                          22111 1466889999999  88899999 99999999874 334444432 3568999999999 


Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                      .+++.+.|..|++++.++........ ...+|+++..+.||+++++.-.+..+++||+....     .+. ...||... 
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~-----lv~-kY~Ghkq~-  439 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK-----LVR-KYFGHKQG-  439 (519)
T ss_pred             EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-----HHH-Hhhccccc-
Confidence            88888899999999988765554333 55789999999999999999999999999999632     222 34455421 


Q ss_pred             CCeEEEEEec-CCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCC
Q 006126          508 TIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       508 ~~v~~~~~sp-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~  581 (660)
                      ..+-.-+|-. +..++++| .|+.|+||+..+++++.++.+  |...|++++|+|.. .++|++++||+|+||....
T Consensus       440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG--Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG--HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            2233344543 45777884 999999999999999999976  79999999999854 6899999999999998764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-32  Score=255.83  Aligned_cols=280  Identities=15%  Similarity=0.182  Sum_probs=225.8

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL  389 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l  389 (660)
                      ....|.|+.+.  ...+++|..|++|+|||..+..                     +...+.  ||.+.|.|+.|....+
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------c~~~L~--GHtGSVLCLqyd~rvi  250 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------CLKILT--GHTGSVLCLQYDERVI  250 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------HHHhhh--cCCCcEEeeeccceEE
Confidence            46789999985  4468999999999998865443                     232222  8999999999998899


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCeEEEEEe
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v~~l~~s  465 (660)
                      ++|+ |.+|++||+++|+++.++-+|...|..+.|+.. ++++++.|.+|.+||+.+..   +.+.+.||...|+.+.|+
T Consensus       251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd  329 (499)
T KOG0281|consen  251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  329 (499)
T ss_pred             EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence            9999 999999999999999999999999999999754 99999999999999998653   346778999999999995


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~  544 (660)
                        .+++++++.|.+|++|++.+++     .+. +..+|.   ..|.|+.+.  |+++++ +.|.+|++||+..|.+++.+
T Consensus       330 --~kyIVsASgDRTikvW~~st~e-----fvR-tl~gHk---RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL  396 (499)
T KOG0281|consen  330 --DKYIVSASGDRTIKVWSTSTCE-----FVR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  396 (499)
T ss_pred             --cceEEEecCCceEEEEecccee-----eeh-hhhccc---ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH
Confidence              5799999999999999999954     344 566887   577777664  788888 49999999999999999999


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc--cCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .+  |..-|.++.|.  .+.+++|+.||+|+|||+.++..-........  ....| .+.|.  .+.|   |...+++++
T Consensus       397 eG--HEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVF--rLQF---D~fqIvsss  466 (499)
T KOG0281|consen  397 EG--HEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVF--RLQF---DEFQIISSS  466 (499)
T ss_pred             hc--hHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeE--EEee---cceEEEecc
Confidence            76  68899999994  78899999999999999987653311110000  00122 33444  7887   457899999


Q ss_pred             CCCeEEEEeCCCCcee
Q 006126          623 TNGRVHVIEPLESEVE  638 (660)
Q Consensus       623 ~Dg~v~iw~~~~~~~~  638 (660)
                      .|.+|.|||..++.+-
T Consensus       467 HddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  467 HDDTILIWDFLNGPPS  482 (499)
T ss_pred             CCCeEEEEEcCCCCcc
Confidence            9999999999887553

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=3.3e-29  Score=256.12  Aligned_cols=347  Identities=15%  Similarity=0.160  Sum_probs=273.6

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .-+||.-.||.|-.||.|+||+...    . ...+++  .||...|+++.|...|..|++||.|+.|.+||+-.......
T Consensus        72 ~~~~d~l~lAVGYaDGsVqif~~~s----~-~~~~tf--ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r  144 (888)
T KOG0306|consen   72 RSSDDILLLAVGYADGSVQIFSLES----E-EILITF--NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR  144 (888)
T ss_pred             eccCCcceEEEEecCceEEeeccCC----C-ceeeee--cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence            3458888999999999999999974    2 233335  45999999999999999999999999999999865443221


Q ss_pred             ---------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCC--
Q 006126          349 ---------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET--  404 (660)
Q Consensus       349 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~--  404 (660)
                                           ..+.+..+++||..+..+..+..  .|.+.++.+++.++.+++++ |+.+++|++..  
T Consensus       145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv--d~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~  222 (888)
T KOG0306|consen  145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV--DHRGEIWALVLDEKLLVTAGTDSELKVWELAFED  222 (888)
T ss_pred             eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe--cccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence                                 23445567999999999888766  79999999999977766666 99999999810  


Q ss_pred             --------------C--------eEEE-----------------------------------------------------
Q 006126          405 --------------F--------QTLA-----------------------------------------------------  409 (660)
Q Consensus       405 --------------~--------~~~~-----------------------------------------------------  409 (660)
                                    |        +.+.                                                     
T Consensus       223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~  302 (888)
T KOG0306|consen  223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD  302 (888)
T ss_pred             ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence                          0        0000                                                     


Q ss_pred             -----------------------------------------------------------------EEcCCCCCeEEEEEc
Q 006126          410 -----------------------------------------------------------------TFANPPPIATYFILL  424 (660)
Q Consensus       410 -----------------------------------------------------------------~~~~~~~~v~~v~~s  424 (660)
                                                                                       ++.+|...|.+++++
T Consensus       303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS  382 (888)
T KOG0306|consen  303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS  382 (888)
T ss_pred             hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence                                                                             001255677888888


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      .+. .+++|+ .++|++|+..+.++++++..  +.+.+..|-|.++++++|...|.+.+||+.+..     .+. ....|
T Consensus       383 ~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-----l~E-ti~AH  453 (888)
T KOG0306|consen  383 SDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS-----LVE-TIRAH  453 (888)
T ss_pred             cCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh-----hhh-hhhcc
Confidence            888 555554 67899999999999999964  488899999999999999999999999999843     334 34477


Q ss_pred             CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC-----CceeeeecCC-----CCCCCeEEEEEccCCCEEEEEecCC
Q 006126          504 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT-----LNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSCKSG  572 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~-----~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~sg~~dg  572 (660)
                      .   +.|.+++.+||++.+++ |.|.+|++||..-     +...+.+...     .-...|.++.+||||++|+++--|+
T Consensus       454 d---gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn  530 (888)
T KOG0306|consen  454 D---GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN  530 (888)
T ss_pred             c---cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence            7   79999999999999999 6999999999641     1111111110     1267899999999999999999999


Q ss_pred             eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCccc
Q 006126          573 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDS  647 (660)
Q Consensus       573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~~  647 (660)
                      +|+||-+++-+..-.+.       || .-+  ++|+..+| |++.++|||.|.+|+||-+.-|+|.-+..+..++
T Consensus       531 TVkVyflDtlKFflsLY-------GH-kLP--V~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS  594 (888)
T KOG0306|consen  531 TVKVYFLDTLKFFLSLY-------GH-KLP--VLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS  594 (888)
T ss_pred             eEEEEEecceeeeeeec-------cc-ccc--eeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence            99999999987666665       55 444  45999999 8999999999999999999999997666665544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=4.8e-30  Score=265.94  Aligned_cols=325  Identities=15%  Similarity=0.180  Sum_probs=255.4

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++|+|...+++++-..|.|++||...    +.+..- +..  |.++|..++|+|++.++++||.|-.|+||+.+..++  
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYRM----~tli~r-Fde--HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--   85 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYRM----GTLIDR-FDE--HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--   85 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhhh----hhHHhh-hhc--cCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence            38999999999999999999999985    333332 444  999999999999999999999999999999876654  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                         +.++.  ||-+.|..+.|+  -.+|++++ |.+|+||+..+++++..+.+|..-|.|..|+
T Consensus        86 -------------------lftL~--GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   86 -------------------LFTLL--GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             -------------------hhhhc--cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence                               22222  899999999999  67999999 8999999999999999999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCc-----------------------------eeeEeeccCCCeEEEEEeCCCCEEEEE
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKK-----------------------------TKAKLKGHQNRITCLAYSLSLNVLVSS  474 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~sp~~~~l~s~  474 (660)
                      |.. .++++|-|.+|+|||+..-+                             ..+.++||...|+-++|+|.-..+++|
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG  224 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG  224 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence            988 99999999999999975210                             124678999999999999999999999


Q ss_pred             eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe
Q 006126          475 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI  553 (660)
Q Consensus       475 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  553 (660)
                      +.|+.|++|.+...+   ...+. ...||.   +.|.++-|+|....+++ |.|++|+|||+...+.++++.-  .....
T Consensus       225 ~DDRqVKlWrmnetK---aWEvD-tcrgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--endRF  295 (1202)
T KOG0292|consen  225 ADDRQVKLWRMNETK---AWEVD-TCRGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRF  295 (1202)
T ss_pred             CCcceeeEEEecccc---ceeeh-hhhccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeec--cCCeE
Confidence            999999999987632   23344 566888   69999999999999999 7999999999999999999865  37788


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEECCCCee----------------EEEeeccc--------ccCCCCcCcccceEEEE
Q 006126          554 TYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----------------RCQINLTA--------YAQPGTISLELYPLVIA  609 (660)
Q Consensus       554 ~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~----------------~~~~~~~~--------~~~~gh~~~~v~~~~v~  609 (660)
                      +.++-+|..+++++|-+.| +.+|.++..++                +..+....        ....|.--.+.+  +++
T Consensus       296 W~laahP~lNLfAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~--sms  372 (1202)
T KOG0292|consen  296 WILAAHPELNLFAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPR--SLS  372 (1202)
T ss_pred             EEEEecCCcceeeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcc--eee
Confidence            9999999999888875444 44555542211                11111100        001121123444  899


Q ss_pred             EecCCCCEEEEEeCC-CeEEEEeCCC
Q 006126          610 AHPLEPNRIALGLTN-GRVHVIEPLE  634 (660)
Q Consensus       610 ~sp~d~~~l~s~s~D-g~v~iw~~~~  634 (660)
                      ++|..+-.+++...| |.--++.+.+
T Consensus       373 YNpae~~vlics~~~n~~y~L~~ipk  398 (1202)
T KOG0292|consen  373 YNPAENAVLICSNLDNGEYELVQIPK  398 (1202)
T ss_pred             eccccCeEEEEeccCCCeEEEEEecC
Confidence            999766666665544 4555666544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.2e-30  Score=270.40  Aligned_cols=284  Identities=17%  Similarity=0.243  Sum_probs=241.4

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      .+..|..++|+|...+++++-..|.|.+||..-+..                     +..+.  .|.++|..++|+  +.
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---------------------i~rFd--eHdGpVRgv~FH~~qp   64 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---------------------IDRFD--EHDGPVRGVDFHPTQP   64 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhH---------------------Hhhhh--ccCCccceeeecCCCC
Confidence            477899999999999999999999999999765543                     11111  699999999999  88


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                      ++++|+ |-.|++|+..+.+++.++.+|..-|+.+.|++.- +|+++|+|.+|+||+..+++++..+.||...|.|..|+
T Consensus        65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            999999 7899999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeee-----------------------ceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLC-----------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                      |....++++|-|.+||+||+..-+...                       ...++.+.+||+   ..|+-++|+|.-..+
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD---RGVNwaAfhpTlpli  221 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD---RGVNWAAFHPTLPLI  221 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc---cccceEEecCCcceE
Confidence            999999999999999999996522111                       112334677898   689999999999999


Q ss_pred             EEE-ecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126          523 LSI-HEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI  599 (660)
Q Consensus       523 ~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~  599 (660)
                      ++| .|..|++|.+...+.  +.+.  .+|.+.|.++-|+|..+++++.++|+.|+|||+...+.++.+..        .
T Consensus       222 VSG~DDRqVKlWrmnetKaWEvDtc--rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--------e  291 (1202)
T KOG0292|consen  222 VSGADDRQVKLWRMNETKAWEVDTC--RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--------E  291 (1202)
T ss_pred             EecCCcceeeEEEeccccceeehhh--hcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec--------c
Confidence            995 889999999875543  3344  35899999999999999999999999999999999888888753        2


Q ss_pred             CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .+..|  .++-|| ..+++|.| .|+-+.||.+.
T Consensus       292 ndRFW--~laahP-~lNLfAAg-HDsGm~VFkle  321 (1202)
T KOG0292|consen  292 NDRFW--ILAAHP-ELNLFAAG-HDSGMIVFKLE  321 (1202)
T ss_pred             CCeEE--EEEecC-Ccceeeee-cCCceEEEEEc
Confidence            55667  788888 67776665 56667777776

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=2e-29  Score=288.40  Aligned_cols=281  Identities=14%  Similarity=0.159  Sum_probs=223.0

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcce---eeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccC
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~  342 (660)
                      .+.|+|+|+++|+|+.|+.|+||+..........   ....+.   +...|.+++|+| ++.+|++++.||+|++||+.+
T Consensus       488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            3699999999999999999999997531111110   011121   456899999987 478999999999999999876


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  418 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v  418 (660)
                      ++.                     +...  .+|...|++++|+   +.+|++|+ ||+|++||+.++..+..+..+ ..+
T Consensus       565 ~~~---------------------~~~~--~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v  620 (793)
T PLN00181        565 SQL---------------------VTEM--KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI  620 (793)
T ss_pred             CeE---------------------EEEe--cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence            543                     1111  1699999999997   67899999 999999999999998888754 578


Q ss_pred             EEEEEcC-CC-eEEEEeCCCeEEEEeCCCCc-eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-eece
Q 006126          419 TYFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSK  494 (660)
Q Consensus       419 ~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-~~~~  494 (660)
                      .++.|++ ++ .|++|+.|+.|++||+++++ .+..+.+|...|.++.|. ++.++++++.|++|++||++.+.. ....
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~  699 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET  699 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc
Confidence            8999965 57 99999999999999998765 567788999999999997 678999999999999999985321 1112


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeec-----------CCCCCCCeEEEEEccCC
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV-----------PDKMDLPITYATYSCDG  562 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~dg  562 (660)
                      ++. ...+|.   ..+..++|+|++.+|++ +.|+.|++|+.....++..+.           ...+...|.+++|+|++
T Consensus       700 ~l~-~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~  775 (793)
T PLN00181        700 PLH-SFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS  775 (793)
T ss_pred             ceE-EEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence            344 456777   68899999999999999 589999999987655443221           12235679999999999


Q ss_pred             CEEEEEecCCeEEEEEC
Q 006126          563 KCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       563 ~~l~sg~~dg~I~iwd~  579 (660)
                      ..|++|+.||.|+||++
T Consensus       776 ~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        776 STLVAANSTGNIKILEM  792 (793)
T ss_pred             CeEEEecCCCcEEEEec
Confidence            99999999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=8.1e-30  Score=240.68  Aligned_cols=287  Identities=13%  Similarity=0.140  Sum_probs=239.7

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |++.|.+++.+|+.++++||+.|....+|+..++..                     ...+  .+|+..|+++.|+  |.
T Consensus        63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---------------------~~el--tgHKDSVt~~~Fshdgt  119 (399)
T KOG0296|consen   63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---------------------AGEL--TGHKDSVTCCSFSHDGT  119 (399)
T ss_pred             cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc---------------------eeEe--cCCCCceEEEEEccCce
Confidence            999999999999999999999999999998877653                     1111  1899999999999  89


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                      +||+|+ +|.|+||+..++.....+...-..+.-+.|+|.+ .|+.|+.||.+.+|.+.++...+.+.||+.++++=.|.
T Consensus       120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~  199 (399)
T KOG0296|consen  120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI  199 (399)
T ss_pred             EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence            999999 9999999999999999887777788889999999 99999999999999999988889999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeee
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~  544 (660)
                      |+|+.++++..||+|++||..++.....     +.....   ....++.++..+..++.| .++.+++.+..+|+.+...
T Consensus       200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~-----~~~~e~---~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  200 PDGKRILTGYDDGTIIVWNPKTGQPLHK-----ITQAEG---LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             CCCceEEEEecCceEEEEecCCCceeEE-----eccccc---CcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence            9999999999999999999999754322     221111   467788999999888885 8889999998888877666


Q ss_pred             cCC------CC---CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126          545 VPD------KM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP  615 (660)
Q Consensus       545 ~~~------~~---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~  615 (660)
                      .+.      .+   ...|.++.|+..=.+.|+|+-||+|.|||+.+.++.....        | .  ..++.+.|-+  .
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--------h-e--~~V~~l~w~~--t  338 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--------H-E--DGVTKLKWLN--T  338 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--------C-C--CceEEEEEcC--c
Confidence            520      12   2345555666666889999999999999999988777654        2 2  2256999988  3


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceecc
Q 006126          616 NRIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       616 ~~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      .+|++++.||+|+.||.++|+.+..
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l~~~  363 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQLKFT  363 (399)
T ss_pred             chheeeccCceEEeeeccccceEEE
Confidence            7899999999999999999987653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-29  Score=253.74  Aligned_cols=267  Identities=16%  Similarity=0.224  Sum_probs=232.7

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++|+|...+++++-.+|.|.|||.++   ...++.+..    ..-+|.++.|-+-.+++++|+.|..|+||+..+.+.. 
T Consensus        19 Vd~HPtePw~la~LynG~V~IWnyet---qtmVksfeV----~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-   90 (794)
T KOG0276|consen   19 VDFHPTEPWILAALYNGDVQIWNYET---QTMVKSFEV----SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-   90 (794)
T ss_pred             eecCCCCceEEEeeecCeeEEEeccc---ceeeeeeee----cccchhhheeeeccceEEEecCCceEEEEecccceee-
Confidence            49999999999999999999999986   344444433    4679999999999999999999999999988776641 


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFIL  423 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~  423 (660)
                               ..+.             .|.+.|++++.+  ..++++++ |-+|++||.+. ..+.++|.+|..-|.+++|
T Consensus        91 ---------~~Fe-------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   91 ---------KTFE-------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             ---------EEee-------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence                     2222             699999999999  77999999 78999999975 5788999999999999999


Q ss_pred             cCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          424 LPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       424 sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      +|.+  .+++++-|++|+||.+.+..+..++++|...|+|+.+-+.  ..+|++|+.|.+++|||..+     ..+++ +
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-----k~CV~-T  222 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-----KSCVQ-T  222 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-----HHHHH-H
Confidence            9988  9999999999999999999999999999999999999874  46999999999999999999     45666 6


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~  575 (660)
                      .+||.   ..|..+.|+|.-..+++ +.||+++||+..+.+...++.-+  ...+++++-.+.+..++.|.++|.|.
T Consensus       223 LeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  223 LEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             hhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEE
Confidence            78998   68999999999999999 59999999999988877777542  67899999888888888888777653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.6e-31  Score=249.76  Aligned_cols=266  Identities=17%  Similarity=0.232  Sum_probs=220.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeec
Q 006126          272 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN  351 (660)
Q Consensus       272 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~  351 (660)
                      -|...+++|..|++|+|||...    -.|... |  .||++.|.|+.|.  .+.+++|+.|.+|+|||+++++       
T Consensus       205 YDD~kiVSGlrDnTikiWD~n~----~~c~~~-L--~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge-------  268 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKNS----LECLKI-L--TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE-------  268 (499)
T ss_pred             ecchhhhcccccCceEEecccc----HHHHHh-h--hcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-------
Confidence            4667899999999999999873    444433 5  4599999999995  4589999999999988876554       


Q ss_pred             cceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCC
Q 006126          352 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD  427 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~---~~~~~~~~~~~v~~v~~sp~~  427 (660)
                                    ++.+++  +|...|..+.|+++++++++ |.+|.+||+....   +.+.+.+|...|+.+.|+.. 
T Consensus       269 --------------~l~tli--hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-  331 (499)
T KOG0281|consen  269 --------------PLNTLI--HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-  331 (499)
T ss_pred             --------------hhhHHh--hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence                          455455  79999999999999999999 9999999998654   33456699999999998644 


Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                      ++++++.|.+|++|++.+++.++++.+|...|-|+.+  .|+++++|+.|.+|++||+..|.     ++. +.+||.   
T Consensus       332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~-----cLR-vLeGHE---  400 (499)
T KOG0281|consen  332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA-----CLR-VLEGHE---  400 (499)
T ss_pred             eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH-----HHH-HHhchH---
Confidence            9999999999999999999999999999999999887  68999999999999999999954     455 678998   


Q ss_pred             CCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee-------ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          508 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ-------LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      .-|.++.|.  .+.+++ +.||+|++||+.++...+.       .....|.+.|..+.|  |...+++++.|.+|-|||.
T Consensus       401 eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  401 ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF  476 (499)
T ss_pred             Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence            689999996  567888 5999999999987543211       111246889999998  4678999999999999999


Q ss_pred             CCCeeE
Q 006126          580 STLELR  585 (660)
Q Consensus       580 ~~~~~~  585 (660)
                      .++..-
T Consensus       477 l~~~~~  482 (499)
T KOG0281|consen  477 LNGPPS  482 (499)
T ss_pred             CCCCcc
Confidence            877543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-30  Score=269.01  Aligned_cols=267  Identities=16%  Similarity=0.218  Sum_probs=208.8

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee------------------------------------eecc
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE------------------------------------EENV  352 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~------------------------------------~~~~  352 (660)
                      .|.+.||++.||+||+|||+||.||.|+||.+...+....                                    ....
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            4999999999999999999999999999999876221000                                    0000


Q ss_pred             ceeEEEecCCCC----ceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 006126          353 NMESQLYQPSSK----LVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ  426 (660)
Q Consensus       353 ~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~  426 (660)
                      ... .+......    ..+..+  .||.+.|..+.|+ +++|++++ |.+|++|++...+|++.| .|..-|+|++|+|.
T Consensus       345 s~~-~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPC-VLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPV  420 (712)
T ss_pred             Ccc-ccCCCccccccccchhhh--hccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEeccc
Confidence            000 11111111    111112  2899999999999 99999999 999999999999999998 58899999999997


Q ss_pred             C--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126          427 D--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       427 ~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  504 (660)
                      +  +|++|+-|+.|+||++...+.+.-. .-..-|++++|.|||+..++|+.+|.+++|++..-+......+. ...+..
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk  498 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKK  498 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCcc
Confidence            6  9999999999999999876655433 34578999999999999999999999999999986655444443 111111


Q ss_pred             CCCCCeEEEEEecCCc--EEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          505 PETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       505 ~~~~~v~~~~~sp~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      .....|+.+.|.|...  .|+++.|..|+|||.++..++..+++......-....|+.||++|+++++|..|+||+...
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            0013699999998544  6777999999999999999999998755556667899999999999999999999999743

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.2e-29  Score=226.42  Aligned_cols=279  Identities=14%  Similarity=0.180  Sum_probs=234.6

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|...|.+++|+.+|..|++|+.|+++.+|+++.......                     ....+|.+.|-.++|.   
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------------~~~~gh~~svdql~w~~~~   76 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------------LVYRGHTDSVDQLCWDPKH   76 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---------------------hcccCCCcchhhheeCCCC
Confidence            3899999999999999999999999999999876643111                     1112799999999999   


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      .+.+++++ |.+|++||+.++++..........+ .+.|+|+| ++++++.|..|...|.++.+.+...+ ....++.+.
T Consensus        77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~  154 (313)
T KOG1407|consen   77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS  154 (313)
T ss_pred             CcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence            77888888 9999999999999998887665555 58899999 99999999999999999887776655 455678888


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~  542 (660)
                      |+.++.+++.....|+|.|.....     -++++ ....|.   ....|+.|+|+|+++++ +.|-.+.+||+...-+++
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~-si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R  225 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPS-----LKPVQ-SIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICER  225 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccc-----ccccc-ccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence            998888888878889999998876     34555 455666   67889999999999999 599999999999888888


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .+..  +.-+|..++||.||++||+|++|..|-|=++++|..+..++.         .++.+  .|+||| ...+||-++
T Consensus       226 ~isR--ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~--tVAWHP-k~~LLAyA~  291 (313)
T KOG1407|consen  226 CISR--LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTF--TVAWHP-KRPLLAYAC  291 (313)
T ss_pred             eecc--ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCce--eEEecC-CCceeeEEe
Confidence            8864  589999999999999999999999999999999999998863         55566  899999 678888877


Q ss_pred             CC---------CeEEEEeCC
Q 006126          623 TN---------GRVHVIEPL  633 (660)
Q Consensus       623 ~D---------g~v~iw~~~  633 (660)
                      +|         |+|+||-+.
T Consensus       292 ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  292 DDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cCCCCccccccceeEEecCC
Confidence            65         567776553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=9.1e-31  Score=255.57  Aligned_cols=290  Identities=12%  Similarity=0.155  Sum_probs=238.2

Q ss_pred             CCccccccCCCC-CCceeecCCCCceeeEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126          242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY  319 (660)
Q Consensus       242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~  319 (660)
                      .+-...|.||.+ |.++           .|.| .+.+|++++-|+.|+||++..   .+.|.+. +  .||..+|..++|
T Consensus       204 kk~~~~~~gH~kgvsai-----------~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrt-f--~gH~k~Vrd~~~  266 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAI-----------QWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRT-F--KGHRKPVRDASF  266 (503)
T ss_pred             HhheeeccCCccccchh-----------hhccceeeEEEecCCCceEEEEEEec---Ccceehh-h--hcchhhhhhhhc
Confidence            345567889988 5555           7788 889999999999999999985   3455443 4  349999999999


Q ss_pred             ecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C-CEEEEEe-CC
Q 006126          320 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GG  395 (660)
Q Consensus       320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~-~~l~s~~-dg  395 (660)
                      +++|..++++|.|+.+++||.++++.                     +...   .-...++|+.|.  + +.+++|+ |+
T Consensus       267 s~~g~~fLS~sfD~~lKlwDtETG~~---------------------~~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~  322 (503)
T KOG0282|consen  267 NNCGTSFLSASFDRFLKLWDTETGQV---------------------LSRF---HLDKVPTCVKFHPDNQNIFLVGGSDK  322 (503)
T ss_pred             cccCCeeeeeecceeeeeeccccceE---------------------EEEE---ecCCCceeeecCCCCCcEEEEecCCC
Confidence            99999999999999999988877764                     2221   244567899999  4 6677777 99


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVS  473 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s  473 (660)
                      .|+.||+++++.++.+..|-+.|..+.|-++| ++++.++|++++||+.+.+-.++... .+.....|+..+|++.++++
T Consensus       323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a  402 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA  402 (503)
T ss_pred             cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence            99999999999999999999999999999999 99999999999999998876655432 24456778999999999999


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCC
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP  552 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~  552 (660)
                      -+.|+.|.++.+...-..   .....+.||.- .+.-..+.|||||.+|++| .||.+.+||.++-+.+..+..  |..+
T Consensus       403 Qs~dN~i~ifs~~~~~r~---nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--h~~~  476 (503)
T KOG0282|consen  403 QSMDNYIAIFSTVPPFRL---NKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--HDQP  476 (503)
T ss_pred             hccCceEEEEeccccccc---CHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--CCcc
Confidence            999999999997652211   11224567652 1455679999999999997 899999999999999888875  6899


Q ss_pred             eEEEEEccCC-CEEEEEecCCeEEEEE
Q 006126          553 ITYATYSCDG-KCIYVSCKSGHVKVFD  578 (660)
Q Consensus       553 v~~~~~s~dg-~~l~sg~~dg~I~iwd  578 (660)
                      ++.+.|+|.. ..+|+++.||.|++||
T Consensus       477 ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  477 CIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEEecCCCcceeEecccCceeEecC
Confidence            9999999965 6899999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.3e-29  Score=270.71  Aligned_cols=311  Identities=18%  Similarity=0.197  Sum_probs=236.7

Q ss_pred             eEecCCCCEEEEEe--CCCcEEEEeccCcCCCcceeeeecCC-----CCCCCCeEEEEEecCCCEEEEEECCCcEEEEec
Q 006126          268 STSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  340 (660)
Q Consensus       268 ~~~spdg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~l~~-----~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~  340 (660)
                      ++.+|||..+++|+  .||.++||+.+............++.     ..|.+.|.|+.|+|||+|||+||.|+.|.||+.
T Consensus        19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER   98 (942)
T ss_pred             EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence            49999999999999  89999999886321111000000111     239999999999999999999999999999986


Q ss_pred             cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126          341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATY  420 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~  420 (660)
                      .....                  +..    +  +-++                 |   .-+++..+++..+.+|...|..
T Consensus        99 ~~~~~------------------~~~----f--gs~g-----------------~---~~~vE~wk~~~~l~~H~~DV~D  134 (942)
T KOG0973|consen   99 AEIGS------------------GTV----F--GSTG-----------------G---AKNVESWKVVSILRGHDSDVLD  134 (942)
T ss_pred             cccCC------------------ccc----c--cccc-----------------c---ccccceeeEEEEEecCCCccce
Confidence            53100                  000    0  0000                 0   1133456788889999999999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      ++|+|++ ++++++.|++|.+||..+.+.+.++++|.+.|..+.|.|-|++|++-+.|++|++|++.++.....  +. -
T Consensus       135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~--It-~  211 (942)
T KOG0973|consen  135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS--IT-K  211 (942)
T ss_pred             eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe--ec-c
Confidence            9999999 999999999999999999999999999999999999999999999999999999999877543221  11 1


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE--Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC------C------
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS--IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD------G------  562 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~--~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d------g------  562 (660)
                      +-.+.+.......+.|||||.+|++  +.+   .++.|.+-.+.+.-..+.+  |..++.++.|+|.      .      
T Consensus       212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~  289 (942)
T KOG0973|consen  212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQ  289 (942)
T ss_pred             chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccC
Confidence            1112221246788999999999998  322   3688888877776667765  6889999999971      1      


Q ss_pred             -C----EEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          563 -K----CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       563 -~----~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                       .    .+|+|+.|+.|-||.....+++..+...  .     +.  .+++++|+| ||..|..||.||+|.+..+...+-
T Consensus       290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f-----~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--F-----NK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CCcceEEEEEecCCccEEEEecCCCCchhhhhhh--h-----cC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence             1    6789999999999999877776654311  1     22  255999999 899999999999999999987653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.3e-29  Score=237.58  Aligned_cols=273  Identities=15%  Similarity=0.175  Sum_probs=222.7

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C-
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~-  386 (660)
                      |.+.|.++...  ++++++|+.||.+++|+......                      ....  ||.++|.+++|.  + 
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----------------------~~~~--Ght~~ik~v~~v~~n~  157 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----------------------KTIV--GHTGPIKSVAWVIKNS  157 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecCCceE----------------------EEEe--cCCcceeeeEEEecCC
Confidence            89999999887  78999999999999998754432                      2111  899999999998  3 


Q ss_pred             --CEEEEEe-CCcEEEEECCCCeEE----EEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC--------------
Q 006126          387 --SHLFSAS-GGKISIFSLETFQTL----ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--------------  444 (660)
Q Consensus       387 --~~l~s~~-dg~I~iwd~~~~~~~----~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~--------------  444 (660)
                        ..+++++ |.++++|..+.+...    +...+|...|.++...++| .+++|+.|..|++|+..              
T Consensus       158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence              3589999 999999998876543    2334999999999999999 99999999999999932              


Q ss_pred             -----------CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126          445 -----------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI  513 (660)
Q Consensus       445 -----------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  513 (660)
                                 ++.++..+.||..+|.++.|++ ...+.+++.|.+|+.||+.++......     ..+     ..+.++
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~-----~~~-----ksl~~i  306 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL-----TTN-----KSLNCI  306 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee-----ecC-----cceeEe
Confidence                       1234567889999999999998 678999999999999999997543322     222     479999


Q ss_pred             EEecCCcEEEE-EecCcEEEEeCCCCc--e-eeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCe-eEEE
Q 006126          514 QFHPDQIHLLS-IHEGQIDVYEAPTLN--H-TSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQ  587 (660)
Q Consensus       514 ~~sp~~~~l~~-~~d~~i~iwd~~~~~--~-~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~-~~~~  587 (660)
                      ..+|..++|++ +.|..|++||.+++.  . .+++.  +|...|.++.|+|.. .+|++|+.|+++++||+++.+ ++..
T Consensus       307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd  384 (423)
T KOG0313|consen  307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD  384 (423)
T ss_pred             ecccccceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence            99999999999 599999999998753  2 34444  478999999999965 567899999999999999877 6776


Q ss_pred             eecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          588 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       588 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +.       || .+.  ++++.|+.  +..+++||.|.+|+|+.-.
T Consensus       385 I~-------~h-~DK--vl~vdW~~--~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  385 IA-------GH-NDK--VLSVDWNE--GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ec-------cC-Cce--EEEEeccC--CceEEeccCcceEEEeccc
Confidence            65       55 444  44999986  7899999999999998754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=4.1e-29  Score=236.91  Aligned_cols=270  Identities=16%  Similarity=0.254  Sum_probs=223.0

Q ss_pred             CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC---CEEEEEECCCcEEEEeccCCceeeeee
Q 006126          274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQSLEEE  350 (660)
Q Consensus       274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg---~~l~s~s~dg~i~vw~~~~~~~~~~~~  350 (660)
                      +++|++|++||.+++||..     +.+... +  .||.++|..++|--..   ..++++|.|.++++|.++.+.....  
T Consensus       115 ~~~IltgsYDg~~riWd~~-----Gk~~~~-~--~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--  184 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK-----GKSIKT-I--VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--  184 (423)
T ss_pred             CceEEEeecCCeeEEEecC-----CceEEE-E--ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--
Confidence            7899999999999999997     344332 3  3599999988886433   3599999999999998776653111  


Q ss_pred             ccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC------------------------
Q 006126          351 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE------------------------  403 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~------------------------  403 (660)
                                     ..  ....||...|.++...  |..+++|+ |..|.+|+..                        
T Consensus       185 ---------------~~--~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~  247 (423)
T KOG0313|consen  185 ---------------AL--KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG  247 (423)
T ss_pred             ---------------HH--hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence                           11  1112899999999987  89999999 9999999932                        


Q ss_pred             -CCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126          404 -TFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  482 (660)
Q Consensus       404 -~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v  482 (660)
                       ++.++-++.+|..+|.++.|++.+.+++++.|.+|+.||+.++..+.++.+ ...++|+..+|..++|++|+.|..|++
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl  326 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL  326 (423)
T ss_pred             cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceee
Confidence             123456778999999999999955999999999999999999999888874 567999999999999999999999999


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEc
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYS  559 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s  559 (660)
                      ||.+++.   ...+...+.+|.   +.|.++.|+|...++++  +.|+++++||+++.+ ++..+..  |...|.++.|.
T Consensus       327 ~DPR~~~---gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~--h~DKvl~vdW~  398 (423)
T KOG0313|consen  327 WDPRTGD---GSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG--HNDKVLSVDWN  398 (423)
T ss_pred             cCCCCCC---CceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc--CCceEEEEecc
Confidence            9999974   233333678998   79999999998887766  499999999999887 8888865  69999999996


Q ss_pred             cCCCEEEEEecCCeEEEEECC
Q 006126          560 CDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       560 ~dg~~l~sg~~dg~I~iwd~~  580 (660)
                       ++..|++|+.|.+|+|+.-.
T Consensus       399 -~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 -EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             -CCceEEeccCcceEEEeccc
Confidence             57799999999999998654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.8e-30  Score=240.58  Aligned_cols=279  Identities=12%  Similarity=0.150  Sum_probs=232.8

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCC--CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~--~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      ..|||||++|++|+.||-|.+||..+++....++- .-.+  .-|.++|.|+.||.|...||+|+.||.|+||.+.++.+
T Consensus       219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY-QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C  297 (508)
T KOG0275|consen  219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY-QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC  297 (508)
T ss_pred             eeeCCCCceEeeccccceeeeehhccchhhhhhhh-hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH
Confidence            38999999999999999999999986432221110 0000  11789999999999999999999999999999877765


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                                           ++. +...|...|+|+.|+  +..+++++ |.++++--+.+|++++.|++|..-|+.+.
T Consensus       298 ---------------------lRr-FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  298 ---------------------LRR-FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             ---------------------HHH-hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence                                 221 112699999999999  77899999 99999999999999999999999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  498 (660)
                      |.+|| .+++++.||+|++|+..+.+|+.+|+.  ...+|+++..-| +-..++++...+++.+.++..      ..+.+
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------QvVrs  429 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QVVRS  429 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eEEee
Confidence            99999 999999999999999999999998875  456788888777 456788899999999999876      33332


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                      +..|... .+...+.+.+|.|.++++ +.|+.++.|.+.+|+.-.++..  |...+..++-+|..+.+++-++||.+++|
T Consensus       430 fsSGkRE-gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  430 FSSGKRE-GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             eccCCcc-CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchhhhc
Confidence            3333221 156778889999999999 8999999999999999888876  68889999999999999999999999999


Q ss_pred             E
Q 006126          578 D  578 (660)
Q Consensus       578 d  578 (660)
                      .
T Consensus       507 k  507 (508)
T KOG0275|consen  507 K  507 (508)
T ss_pred             C
Confidence            5

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=7.7e-29  Score=251.37  Aligned_cols=352  Identities=13%  Similarity=0.144  Sum_probs=271.2

Q ss_pred             CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC-----------CCEEEEEECC
Q 006126          264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----------GDFLVALTQT  332 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd-----------g~~l~s~s~d  332 (660)
                      +.+++.|.|....+.+.-.|..++|||+.+....+++..+-.    |...||.+.--|-           ...++|++.|
T Consensus       326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly----HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD  401 (1080)
T KOG1408|consen  326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY----HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSD  401 (1080)
T ss_pred             ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee----ccceeeeeccccccccCcccccCCccceeEecCC
Confidence            456789999999999999999999999999888888877543    8999999887661           1258999999


Q ss_pred             CcEEEEeccCCcee----eeeeccceeEEEe---------cCCCCceeeecc-cCCCCCCeEEEEEe--CCEEEEEe-CC
Q 006126          333 ATHKLWKWQSNKQS----LEEENVNMESQLY---------QPSSKLVMTNDI-AADPKDSISCFALR--GSHLFSAS-GG  395 (660)
Q Consensus       333 g~i~vw~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~h~~~v~~v~~s--~~~l~s~~-dg  395 (660)
                      ++|++|++......    ....+....-.+|         |...+-.-+... .-+....+.+++.+  |++|++|. .|
T Consensus       402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~G  481 (1080)
T KOG1408|consen  402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGG  481 (1080)
T ss_pred             CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccC
Confidence            99999999863211    0000000000111         111111000000 00345679999999  99999999 89


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC----eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCC--
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL--  468 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~----~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~--  468 (660)
                      .+++|++...+....+..|...|.|+.++.-.    +|++++.|+-|.|||+... .+++++.+|...|+++.|.-+|  
T Consensus       482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            99999999998888999999999999998643    8999999999999998654 5678899999999999998877  


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC
Q 006126          469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD  547 (660)
Q Consensus       469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~  547 (660)
                      ..+++++.|..|.+--.+........+-.+-..++    ..++.|+..|..+++++ +.|..|+|||+.+++..+.|++.
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k----tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs  637 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK----TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS  637 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceecccccccccc----ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence            77999999988754322211000011111111122    47899999999999999 79999999999999999999875


Q ss_pred             -CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe
Q 006126          548 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR  626 (660)
Q Consensus       548 -~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~  626 (660)
                       +|.+....+...|.|.||++.+.|.++.++|..+|+++....       ||.. -  ++.+.|.+ |-+.|++++.||.
T Consensus       638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE-~--VTG~kF~n-DCkHlISvsgDgC  706 (1080)
T KOG1408|consen  638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSE-A--VTGVKFLN-DCKHLISVSGDGC  706 (1080)
T ss_pred             ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccch-h--eeeeeecc-cchhheeecCCce
Confidence             356888999999999999999999999999999999998876       6533 3  55999999 8999999999999


Q ss_pred             EEEEeCCC
Q 006126          627 VHVIEPLE  634 (660)
Q Consensus       627 v~iw~~~~  634 (660)
                      |.||.+..
T Consensus       707 IFvW~lp~  714 (1080)
T KOG1408|consen  707 IFVWKLPL  714 (1080)
T ss_pred             EEEEECch
Confidence            99999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=5.1e-29  Score=244.53  Aligned_cols=294  Identities=19%  Similarity=0.223  Sum_probs=225.6

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |+..|.++++.|.|-.+++||.|-+|++||+........                .+....-  .....|.++.|+  |+
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------~fr~l~P--~E~h~i~sl~ys~Tg~  227 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------SFRQLQP--CETHQINSLQYSVTGD  227 (641)
T ss_pred             CceEEEEeeecCCCceeeeccccceEEEEecccccccch----------------hhhccCc--ccccccceeeecCCCC
Confidence            889999999999999999999999999999876543110                0111001  234568899999  77


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEE------------cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-eeeE
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATF------------ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAK  451 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~------------~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~-~~~~  451 (660)
                      .|++.+ ....+++|-...+.....            ++|...++|.+|+|+.  .|++++.||++++||+..-+ ..++
T Consensus       228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV  307 (641)
T KOG0772|consen  228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV  307 (641)
T ss_pred             eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence            666666 889999997654443322            4788899999999998  99999999999999987643 2333


Q ss_pred             ee-----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E
Q 006126          452 LK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I  525 (660)
Q Consensus       452 ~~-----~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~  525 (660)
                      ++     +..-+++.++|+|||+.+++|+.||.|.+||..+....   +...+...|.+ ...|+|+.||+||++|++ |
T Consensus       308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~---p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR---PVMKVKDAHLP-GQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc---cceEeeeccCC-CCceeEEEeccccchhhhcc
Confidence            32     23457889999999999999999999999998664322   22224456652 138999999999999999 8


Q ss_pred             ecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEECCCCeeEEEeecccccCCCC
Q 006126          526 HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQINLTAYAQPGT  598 (660)
Q Consensus       526 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~~~~~gh  598 (660)
                      .|+++++||++..+ ++.+..+-....+-+.++|||+.++|++|..      .|.+++||..+.+.+..+...       
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-------  456 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-------  456 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-------
Confidence            99999999998754 5555544334667788999999999999865      378999999999988888643       


Q ss_pred             cCcccceEEEEEecCCCCEEEEEeCCCeEEE-EeCCCCc
Q 006126          599 ISLELYPLVIAAHPLEPNRIALGLTNGRVHV-IEPLESE  636 (660)
Q Consensus       599 ~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i-w~~~~~~  636 (660)
                         ...|..+.||| .-+.+..|+.||+++| ||.+...
T Consensus       457 ---~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~  491 (641)
T KOG0772|consen  457 ---TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI  491 (641)
T ss_pred             ---CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence               23355899999 6778888888999988 5665543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.7e-27  Score=222.03  Aligned_cols=284  Identities=15%  Similarity=0.143  Sum_probs=223.7

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      ..+.|.++.|+++|.++++++.|.++++||..+++.                     .....  .++..+..++|.  ..
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------~~ti~--skkyG~~~~~Fth~~~   69 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------VKTIN--SKKYGVDLACFTHHSN   69 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------eeEee--cccccccEEEEecCCc
Confidence            377999999999999999999999999888776654                     22111  345567777777  44


Q ss_pred             EEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          388 HLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       388 ~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      .++.++   |.+|+..++.+.+.++.|.+|...|.+++.+|-+ .+++++.|++|++||++..++...+...  .-..++
T Consensus        70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~A  147 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAA  147 (311)
T ss_pred             eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCccee
Confidence            444443   7899999999999999999999999999999999 9999999999999999988877766533  334567


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee--ccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCce
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  540 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~  540 (660)
                      |.|.|-++|++.....|++||++.-..   .+..++..  +..   ...+.+.|||||++|+.+ ..+.+++.|.-+|..
T Consensus       148 fDp~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf~i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  148 FDPEGLIFALANGSELIKLYDLRSFDK---GPFTTFSITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             ECCCCcEEEEecCCCeEEEEEecccCC---CCceeEccCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            999999999998888999999998532   22222211  222   578899999999999996 778899999999998


Q ss_pred             eeeecCCCCCC-CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126          541 TSQLVPDKMDL-PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       541 ~~~~~~~~~~~-~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~  619 (660)
                      ..++....... .-...+|+||++++++|+.||+|.+|++++|..+..+...       +..++.  ++.|+| .-.++|
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------~~~~~~--~~~fnP-~~~mf~  291 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------NGGPVS--CVRFNP-RYAMFV  291 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------CCCCcc--ccccCC-ceeeee
Confidence            88887643332 2257889999999999999999999999999999888742       133344  889999 444555


Q ss_pred             EEeCCCeEEEEeCCCCc
Q 006126          620 LGLTNGRVHVIEPLESE  636 (660)
Q Consensus       620 s~s~Dg~v~iw~~~~~~  636 (660)
                      |  .+..+.+|-+...+
T Consensus       292 s--a~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  292 S--ASSNLVFWLPDEDA  306 (311)
T ss_pred             e--cCceEEEEeccccc
Confidence            5  46789999887543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5e-30  Score=245.53  Aligned_cols=279  Identities=16%  Similarity=0.181  Sum_probs=233.6

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.+.|..+.|-++...|++|+.|..|++|++..++..                   .+..+.  |..+.|+.+.|.  +.
T Consensus       174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLa--Gs~g~it~~d~d~~~~  232 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-------------------LISTLA--GSLGNITSIDFDSDNK  232 (459)
T ss_pred             cccccceeEEccCcchhhhcchhhhhhhhhcccchhh-------------------hhhhhh--ccCCCcceeeecCCCc
Confidence            8999999999999888999999999999997766531                   122111  677889999999  77


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                      ++++++ |+.+++|++...+...++.+|...|+++.|.... .+++|+.|.+|+.||+....+.+++- ....+..|..+
T Consensus       233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~  311 (459)
T KOG0288|consen  233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS  311 (459)
T ss_pred             eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence            777766 9999999999999999999999999999999888 89999999999999999988887665 33455666665


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~  544 (660)
                        ...+++|-.|++|++||.++.......++.          +.|+++..+++|..+.+ +.|.++.+.|+++......+
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             --ceeeeecccccceEEEeccCCceeeEeecC----------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence              567888999999999999996654444433          68999999999999998 59999999999998888777


Q ss_pred             cCCC--CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          545 VPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       545 ~~~~--~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      ....  .....+.+.|||++.|+++|+.||.|+||++.++++...+...      + .+ -.+++++|+| .|..|++++
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s------~-s~-~aI~s~~W~~-sG~~Llsad  450 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS------T-SN-AAITSLSWNP-SGSGLLSAD  450 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC------C-CC-cceEEEEEcC-CCchhhccc
Confidence            6532  1455889999999999999999999999999999999888743      1 22 1355999999 799999999


Q ss_pred             CCCeEEEEe
Q 006126          623 TNGRVHVIE  631 (660)
Q Consensus       623 ~Dg~v~iw~  631 (660)
                      .++.+.+|.
T Consensus       451 k~~~v~lW~  459 (459)
T KOG0288|consen  451 KQKAVTLWT  459 (459)
T ss_pred             CCcceEecC
Confidence            999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-28  Score=223.67  Aligned_cols=288  Identities=15%  Similarity=0.190  Sum_probs=228.1

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      .||..+++.+.|+.+|.+|.+++.|.+..||--.+++                     .+-.+.  ||.+.|+|+..+  
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---------------------rlGty~--GHtGavW~~Did~~   63 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---------------------RLGTYD--GHTGAVWCCDIDWD   63 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---------------------eeeeec--CCCceEEEEEecCC
Confidence            3599999999999999999999999999988654443                     232222  899999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCC-------CCceeeE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPC-------TKKTKAK  451 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~-------~~~~~~~  451 (660)
                      .+++++|+ |.++++||+++|+++..++ ...+|..+.|+++| +++...++     +.|.++|++       ..++..+
T Consensus        64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            88999999 9999999999999998886 45678999999999 66655543     479999988       4456777


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI  530 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i  530 (660)
                      +..+...++.+.|.|-+++|++|..||.|..||+++|..    .+. ....|.   ..|+.+.++||..++++ +.|.+-
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~----~v~-s~~~h~---~~Ind~q~s~d~T~FiT~s~Dtta  214 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE----LVD-SDEEHS---SKINDLQFSRDRTYFITGSKDTTA  214 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----eee-chhhhc---cccccccccCCcceEEecccCccc
Confidence            878889999999999999999999999999999999642    222 334565   68999999999999999 699999


Q ss_pred             EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe--EEEEECCCCeeEEEeec-----ccccCCCCcCccc
Q 006126          531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLELRCQINL-----TAYAQPGTISLEL  603 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~--I~iwd~~~~~~~~~~~~-----~~~~~~gh~~~~v  603 (660)
                      ++||+.+...++++..   ..+|++.+++|...+++.|+....  |.-=+.+.|+....+-.     ..-...|| -+++
T Consensus       215 kl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPI  290 (327)
T KOG0643|consen  215 KLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPI  290 (327)
T ss_pred             eeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCc
Confidence            9999999999999975   789999999998888877654322  22222222322211110     00113365 5667


Q ss_pred             ceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +  +++||| +|+..++|+.||.||+.-...
T Consensus       291 N--svAfhP-dGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  291 N--SVAFHP-DGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             c--eeEECC-CCcccccCCCCceEEEEEecc
Confidence            7  999999 899999999999999976543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=2.1e-29  Score=225.97  Aligned_cols=287  Identities=14%  Similarity=0.153  Sum_probs=235.4

Q ss_pred             cccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCE
Q 006126          247 ASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF  325 (660)
Q Consensus       247 ~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~  325 (660)
                      +..||.. |+.+.|+        -..|+|-+|++++.||.-.+-+-+    ++...- ++++  |.+.||......+...
T Consensus         9 ~c~ghtrpvvdl~~s--------~itp~g~flisa~kd~~pmlr~g~----tgdwig-tfeg--hkgavw~~~l~~na~~   73 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFS--------PITPDGYFLISASKDGKPMLRNGD----TGDWIG-TFEG--HKGAVWSATLNKNATR   73 (334)
T ss_pred             EEcCCCcceeEEecc--------CCCCCceEEEEeccCCCchhccCC----CCCcEE-eeec--cCcceeeeecCchhhh
Confidence            3467766 6776555        457899999999999987666555    344433 2544  9999999999999888


Q ss_pred             EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEC
Q 006126          326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL  402 (660)
Q Consensus       326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~  402 (660)
                      -|+++.|-+.+|||.-++.                     .+..+   .|..-|.+++|+  .++|++|+ +..+++||+
T Consensus        74 aasaaadftakvw~a~tgd---------------------elhsf---~hkhivk~~af~~ds~~lltgg~ekllrvfdl  129 (334)
T KOG0278|consen   74 AASAAADFTAKVWDAVTGD---------------------ELHSF---EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL  129 (334)
T ss_pred             hhhhcccchhhhhhhhhhh---------------------hhhhh---hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence            8899988888777654443                     33322   588999999999  78999999 899999999


Q ss_pred             CCCe-EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          403 ETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       403 ~~~~-~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                      +..+ +...+.+|.+.|..+.|.... .|++.+.|++|++||.+++..++++. .+.+|+++.++++|+++.+ ...+.|
T Consensus       130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV  207 (334)
T KOG0278|consen  130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSV  207 (334)
T ss_pred             cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCcee
Confidence            8754 466788999999999999888 88888999999999999999999987 5678999999999987765 457789


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS  559 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  559 (660)
                      .+||..+...++...+.          ..|.+..++|+...+++ +.|..++.||..++..+..+.. +|.++|.++.|+
T Consensus       208 ~Fwdaksf~~lKs~k~P----------~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk-gh~gpVhcVrFS  276 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYKMP----------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK-GHFGPVHCVRFS  276 (334)
T ss_pred             EEeccccccceeeccCc----------cccccccccCCCceEEecCcceEEEEEeccCCceeeeccc-CCCCceEEEEEC
Confidence            99999996554444333          57889999999988888 5999999999999999888633 479999999999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCeeE
Q 006126          560 CDGKCIYVSCKSGHVKVFDTSTLELR  585 (660)
Q Consensus       560 ~dg~~l~sg~~dg~I~iwd~~~~~~~  585 (660)
                      |||...++|++||+|++|.+..++..
T Consensus       277 PdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  277 PDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCCceeeccCCCceEEEEEecCCCch
Confidence            99999999999999999999876644

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.7e-28  Score=237.88  Aligned_cols=279  Identities=19%  Similarity=0.260  Sum_probs=226.6

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      .+.|.+++|||...+=.+....-.+.+|+..+                     ....+++.  .....|+++.|.  |.+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~---------------------~~~~k~~s--rFk~~v~s~~fR~DG~L   82 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT---------------------RSVRKTFS--RFKDVVYSVDFRSDGRL   82 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecch---------------------hhhhhhHH--hhccceeEEEeecCCeE
Confidence            57899999999775433333334555555433                     22222222  367789999999  777


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                      |++|. .|.|++||+.+...++.+.+|..++..+.|+|++  .+++|++|+.+++||+.+......+.+|+..|.|.+|+
T Consensus        83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~  162 (487)
T KOG0310|consen   83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS  162 (487)
T ss_pred             EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence            77777 7999999988777788899999999999999988  89999999999999999988766889999999999999


Q ss_pred             CC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeee
Q 006126          466 LS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       466 p~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~  544 (660)
                      |- +..+++|+.||+|++||+++..    ..+  ..-.|.   .+|.++.+-|.|..++++..+.|++||+.+|...-..
T Consensus       163 ~~~~hivvtGsYDg~vrl~DtR~~~----~~v--~elnhg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  163 PANDHIVVTGSYDGKVRLWDTRSLT----SRV--VELNHG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS  233 (487)
T ss_pred             cCCCeEEEecCCCceEEEEEeccCC----cee--EEecCC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence            94 5589999999999999999832    122  233455   6899999999999999988899999999866654443


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                      .. .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+..+         ++  +++++.+| +++.++.|..|
T Consensus       234 ~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~p--vLsiavs~-dd~t~viGmsn  300 (487)
T KOG0310|consen  234 MF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GP--VLSIAVSP-DDQTVVIGMSN  300 (487)
T ss_pred             hh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cc--eeeEEecC-CCceEEEeccc
Confidence            33 37999999999999999999999999999999999999888753         33  45999999 88999999999


Q ss_pred             CeEEEEeCCC
Q 006126          625 GRVHVIEPLE  634 (660)
Q Consensus       625 g~v~iw~~~~  634 (660)
                      |.+.+=+...
T Consensus       301 Glv~~rr~~~  310 (487)
T KOG0310|consen  301 GLVSIRRREV  310 (487)
T ss_pred             ceeeeehhhc
Confidence            9988875443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.8e-28  Score=218.62  Aligned_cols=275  Identities=15%  Similarity=0.203  Sum_probs=217.9

Q ss_pred             eEecCCC-CEEEEEe-------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEE
Q 006126          268 STSLPDA-DSAVCAK-------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLW  338 (660)
Q Consensus       268 ~~~spdg-~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw  338 (660)
                      +.|||-- .+||.+.       ..|.+.|-+..+...-.++..+.     -.+.+..++|+++. +.+++++.||++++|
T Consensus        14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-----TEDGLFDVAWSENHENQVIAASGDGSLRLF   88 (311)
T ss_pred             eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-----cccceeEeeecCCCcceEEEEecCceEEEe
Confidence            3777742 2333332       34788888887544445555554     47899999999965 578889999999999


Q ss_pred             eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126          339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP  414 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~  414 (660)
                      |......         .+..|.             .|...|.++.|+   +..+++++ |++|++|+...++.++++.+|
T Consensus        89 d~~~~s~---------Pi~~~k-------------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh  146 (311)
T KOG0277|consen   89 DLTMPSK---------PIHKFK-------------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH  146 (311)
T ss_pred             ccCCCCc---------chhHHH-------------hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence            9543321         111222             699999999999   66777788 999999999999999999999


Q ss_pred             CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeee
Q 006126          415 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL  491 (660)
Q Consensus       415 ~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~  491 (660)
                      ...|....|+|..  .+++++.|+++++||++..-....+..|...|.|+.|+. +.+.+++|+.|+.|+.||++.-+  
T Consensus       147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--  224 (311)
T KOG0277|consen  147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--  224 (311)
T ss_pred             ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--
Confidence            9999999999977  999999999999999986544445888999999999988 67789999999999999999832  


Q ss_pred             eceeeeeeeeccCCCCCCeEEEEEecCCcEEE-E-EecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEcc-CCCEEEE
Q 006126          492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYV  567 (660)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-dg~~l~s  567 (660)
                        .++. ...+|.   -.|..+.|||...-++ + +.|-+++|||...+.. +.+..  .|...+..+.||+ ++.++|+
T Consensus       225 --~pl~-eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  225 --TPLF-ELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVAS  296 (311)
T ss_pred             --ccce-eecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeee
Confidence              4455 457887   6999999999765554 4 5899999999985543 33332  4788999999996 6789999


Q ss_pred             EecCCeEEEEEC
Q 006126          568 SCKSGHVKVFDT  579 (660)
Q Consensus       568 g~~dg~I~iwd~  579 (660)
                      .+.|+.++||+.
T Consensus       297 ~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  297 TGWDELLYVWNP  308 (311)
T ss_pred             cccccceeeecc
Confidence            999999999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=253.72  Aligned_cols=270  Identities=20%  Similarity=0.222  Sum_probs=231.2

Q ss_pred             CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126          274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      +.++++++.|.++++||...    +......+.  ||.+.|++++|..-+.+|++|+.|.++++||..++..        
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~----~~~i~~~l~--GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C--------  283 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNN----GYLILTRLV--GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC--------  283 (537)
T ss_pred             cCeEEecCCCceeEEeeccc----ceEEEeecc--CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--------
Confidence            77899999999999999984    555444454  4999999999998788999999999999988766654        


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEE
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s  431 (660)
                                   ...+.  +|...|.++...+.++++|+ |.+|++|++.++.++..+.+|..+|.++..+  + .+++
T Consensus       284 -------------~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvs  346 (537)
T KOG0274|consen  284 -------------THSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVS  346 (537)
T ss_pred             -------------EEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEE
Confidence                         33332  79999999988888899999 9999999999999999999999999999998  5 9999


Q ss_pred             EeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeE
Q 006126          432 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN  511 (660)
Q Consensus       432 ~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  511 (660)
                      |+.|++|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|++|++||+++..    .++. .+.+|.   +-+.
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~-tl~~h~---~~v~  417 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIH-TLQGHT---SLVS  417 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhh-hhcCCc---cccc
Confidence            999999999999999999999999999999988655 899999999999999999942    4555 566776   4554


Q ss_pred             EEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126          512 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       512 ~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~  588 (660)
                      .+.  ..+++|++ +.|++|++||..++++++++... |...|..+++.  ...+++++.||.+++||+++++....+
T Consensus       418 ~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  418 SLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            443  45778888 59999999999999999999764 56888888876  578889999999999999999988766

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.9e-27  Score=251.99  Aligned_cols=277  Identities=17%  Similarity=0.197  Sum_probs=232.4

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |...+.+..|.  +.++++++.|++|++|+...+..                     +...+ .||.+.|+++++.  +.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~---------------------i~~~l-~GH~g~V~~l~~~~~~~  262 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL---------------------ILTRL-VGHFGGVWGLAFPSGGD  262 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceE---------------------EEeec-cCCCCCceeEEEecCCC
Confidence            57788888888  55789999999998887655543                     22211 2899999999999  89


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp  466 (660)
                      +|++|+ |.++++||..+|.+...+.+|...|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|+++..+ 
T Consensus       263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-  340 (537)
T KOG0274|consen  263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-  340 (537)
T ss_pred             EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence            999999 999999999999999999999999998877554 78889999999999999999999999999999999997 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeee
Q 006126          467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQL  544 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~  544 (660)
                       +.++++|+.|++|++||+.++     .++. ...+|.   ..|.++.+.+. ..+++ +.|++|++||+++. +++.++
T Consensus       341 -~~~lvsgs~d~~v~VW~~~~~-----~cl~-sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  341 -EPLLVSGSYDGTVKVWDPRTG-----KCLK-SLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             -CCEEEEEecCceEEEEEhhhc-----eeee-eecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence             889999999999999999984     4455 566788   79999988876 67777 59999999999999 898888


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                      ..  |..-+..+.  ..+++|++++.|+.|++||..+++++..+..+      | ...+.  .+.+.   ...+++++.|
T Consensus       410 ~~--h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~------~-~~~v~--~l~~~---~~~il~s~~~  473 (537)
T KOG0274|consen  410 QG--HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR------H-VGGVS--ALALG---KEEILCSSDD  473 (537)
T ss_pred             cC--Ccccccccc--cccceeEeccccccEEEeecccCceeeeeccC------C-cccEE--EeecC---cceEEEEecC
Confidence            65  566665554  45889999999999999999999999998731      1 22233  55543   3678899999


Q ss_pred             CeEEEEeCCCCceec
Q 006126          625 GRVHVIEPLESEVEW  639 (660)
Q Consensus       625 g~v~iw~~~~~~~~w  639 (660)
                      |++++||+.+++..-
T Consensus       474 ~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  474 GSVKLWDLRSGTLIR  488 (537)
T ss_pred             CeeEEEecccCchhh
Confidence            999999999998744

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.2e-26  Score=245.85  Aligned_cols=274  Identities=14%  Similarity=0.135  Sum_probs=209.6

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeee-cccCCCCCCeEEEEEe---
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR---  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~s---  385 (660)
                      |-..|.....++|+..+++++.+.....|+...+..           .++....|..... ....+|.+.|.+++|+   
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-----------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d   87 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-----------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD   87 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceE-----------EeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence            344566677788877788888888888898655432           3344444432210 0112799999999998   


Q ss_pred             CCEEEEEe-CCcEEEEECCCC-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeecc
Q 006126          386 GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH  455 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~  455 (660)
                      +++|++++ |++|++||+.++       ..+..+.+|...|.+++|+|++  .|++|+.|++|++||+++++.+..+.+|
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            57899999 999999999765       3567788999999999999986  8999999999999999999999999999


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E----ecCcE
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQI  530 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~----~d~~i  530 (660)
                      ...|.+++|+|+|.+|++++.|++|++||+++++.     +. ...+|..  ..+..+.|.+++..+++ +    .|+.|
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~-tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~V  239 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VS-SVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQI  239 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EE-EEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence            99999999999999999999999999999998643     22 2345542  34557889998888776 4    36899


Q ss_pred             EEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126          531 DVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       531 ~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      ++||+++.. ++..... ++...+....|++++++|++|+. |+.|++||+.++++.......       +..+..  .+
T Consensus       240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-------s~~~~~--g~  309 (493)
T PTZ00421        240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-------SVEPHK--GL  309 (493)
T ss_pred             EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-------CCCCCc--ce
Confidence            999998755 3333322 23455666789999999998874 999999999999877665421       133344  67


Q ss_pred             EEec
Q 006126          609 AAHP  612 (660)
Q Consensus       609 ~~sp  612 (660)
                      +|.|
T Consensus       310 ~~~p  313 (493)
T PTZ00421        310 CMMP  313 (493)
T ss_pred             Eecc
Confidence            7777

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=220.09  Aligned_cols=240  Identities=19%  Similarity=0.228  Sum_probs=205.5

Q ss_pred             CCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCce
Q 006126          373 ADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKT  448 (660)
Q Consensus       373 ~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~  448 (660)
                      ..|.+++++++.++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.++-   .|++|+.||.|.+|+.....+
T Consensus        40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~  119 (362)
T KOG0294|consen   40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL  119 (362)
T ss_pred             cccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence            379999999999999999999 9999999999999999999999999999999876   899999999999999999999


Q ss_pred             eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecC
Q 006126          449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG  528 (660)
Q Consensus       449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~  528 (660)
                      +..+++|.+.|+.++.+|.|++.++.+.|+.+++||+-.|+......+.          ...+.+.|+|.|.+++.+...
T Consensus       120 ~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----------~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  120 LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----------NKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----------CcceeeEEcCCCCEEEEEecc
Confidence            9999999999999999999999999999999999999987654333333          234569999999999998788


Q ss_pred             cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126          529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      .|-+|.+.+......+..   ...+.++.|. ++..|++|++|+.|.+||..+..+...+..       | ...|..+..
T Consensus       190 ~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-------H-~~RVK~i~~  257 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-------H-ENRVKDIAS  257 (362)
T ss_pred             EEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec-------c-hhheeeeEE
Confidence            899999988777666643   3556677764 678899999999999999999888888774       3 455652222


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          609 AAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      --.| ++.+|+|+|.||.|+|||+...
T Consensus       258 ~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  258 YTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EecC-CceEEEEeccCceEEEEEcccc
Confidence            3356 7889999999999999999876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.2e-28  Score=253.06  Aligned_cols=241  Identities=14%  Similarity=0.185  Sum_probs=201.8

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC--------------------------------C-------------
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------------------------------F-------------  405 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~--------------------------------~-------------  405 (660)
                      .|.+.|+++.|+  |+|||+|+ |+.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            699999999999  99999999 99999998744                                0             


Q ss_pred             ---------------eEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCC
Q 006126          406 ---------------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLN  469 (660)
Q Consensus       406 ---------------~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~  469 (660)
                                     ++++.|.+|...|..+.|+.++.|++++.|.+|++|++...+++..|. |...|+|++|+| |.+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR  423 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence                           122345679999999999999999999999999999999999999998 999999999999 889


Q ss_pred             EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC
Q 006126          470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK  548 (660)
Q Consensus       470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  548 (660)
                      ++++|+-||.+|||++...+......++          .-|++++|.|||++.++| .+|.+++|+....+....+....
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWNDLR----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehhhh----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            9999999999999999885443333333          479999999999999995 99999999998877766654432


Q ss_pred             C------CCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          549 M------DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       549 ~------~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      +      ...|+.+.|.|.. ..|++.+.|..|||||.++..++..++.       .+.. -..+...|+. ||++|+++
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-------~~n~-~SQ~~Asfs~-Dgk~IVs~  564 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-------FRNT-SSQISASFSS-DGKHIVSA  564 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-------cccC-CcceeeeEcc-CCCEEEEe
Confidence            2      3379999999744 4577778999999999999988888873       2221 1234689999 99999999


Q ss_pred             eCCCeEEEEeCCC
Q 006126          622 LTNGRVHVIEPLE  634 (660)
Q Consensus       622 s~Dg~v~iw~~~~  634 (660)
                      ++|..|+||+...
T Consensus       565 seDs~VYiW~~~~  577 (712)
T KOG0283|consen  565 SEDSWVYIWKNDS  577 (712)
T ss_pred             ecCceEEEEeCCC
Confidence            9999999999744

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.5e-28  Score=218.17  Aligned_cols=237  Identities=15%  Similarity=0.157  Sum_probs=195.5

Q ss_pred             CCCCeEEEEEe---CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc
Q 006126          375 PKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK  447 (660)
Q Consensus       375 h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~  447 (660)
                      -.+.+..++|+   .+.+++++ ||.+++||... ..++..++.|...|.++.|++..  .+++++.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            56778999999   56677776 99999999643 45788899999999999999977  88889999999999999999


Q ss_pred             eeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE-EE-
Q 006126          448 TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-  524 (660)
Q Consensus       448 ~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~-  524 (660)
                      .++++.+|...|...+|+| ..+.++++|.|+++++||++..-    +.+  ....|.   ..+.++.|+.-...+ ++ 
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----k~~--~i~ah~---~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----KFM--SIEAHN---SEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----cee--EEEecc---ceeEeecccccCCcEEEec
Confidence            9999999999999999999 67899999999999999998742    222  244565   689999999865555 45 


Q ss_pred             EecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCee-EEEeecccccCCCCcCc
Q 006126          525 IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISL  601 (660)
Q Consensus       525 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~  601 (660)
                      +.|+.|+.||+++.+ ++..+.  .|.-.|..+.|||.. ..|++++.|-+++|||...+.- +.+..        ||..
T Consensus       210 ~vd~~vr~wDir~~r~pl~eL~--gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--------~HtE  279 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLRTPLFELN--GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--------HHTE  279 (311)
T ss_pred             CCCceEEEEehhhccccceeec--CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--------ccce
Confidence            499999999998755 455553  479999999999965 6889999999999999985432 33332        2243


Q ss_pred             ccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      -  +..+.|++.++.++|+++.|+.++||++
T Consensus       280 F--v~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  280 F--VCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             E--EeccccccccCceeeecccccceeeecc
Confidence            3  4489999988999999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=4.9e-28  Score=237.64  Aligned_cols=298  Identities=18%  Similarity=0.184  Sum_probs=223.8

Q ss_pred             cccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcc-eeeeecCCCCCCCCeEEEEEecCCC
Q 006126          247 ASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGD  324 (660)
Q Consensus       247 ~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~l~~~~h~~~V~~~~~spdg~  324 (660)
                      .+++|.+ |..+           .+-|.|-++++|+.|-+|++||+.++...-+ ++++ .|.  ....|.+++||+.|.
T Consensus       162 ~l~hgtk~Vsal-----------~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~--E~h~i~sl~ys~Tg~  227 (641)
T KOG0772|consen  162 QLKHGTKIVSAL-----------AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPC--ETHQINSLQYSVTGD  227 (641)
T ss_pred             eccCCceEEEEe-----------eecCCCceeeeccccceEEEEecccccccchhhhcc-Ccc--cccccceeeecCCCC
Confidence            4566666 4444           7889999999999999999999987543322 2332 333  466899999999999


Q ss_pred             EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceee-ecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEE
Q 006126          325 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR---GSHLFSAS-GGKISI  399 (660)
Q Consensus       325 ~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~i  399 (660)
                      .|++.+....++|+|.........            .+....+. .....||...++|.+|+   .+.+++++ ||++++
T Consensus       228 ~iLvvsg~aqakl~DRdG~~~~e~------------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi  295 (641)
T KOG0772|consen  228 QILVVSGSAQAKLLDRDGFEIVEF------------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI  295 (641)
T ss_pred             eEEEEecCcceeEEccCCceeeee------------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence            999999999999999766543111            01111111 11112899999999999   55677888 999999


Q ss_pred             EECCCCeE-EEEEc-----CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce---eeEeeccCC--CeEEEEEeCC
Q 006126          400 FSLETFQT-LATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQN--RITCLAYSLS  467 (660)
Q Consensus       400 wd~~~~~~-~~~~~-----~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~---~~~~~~~~~--~v~~l~~sp~  467 (660)
                      ||+...+. .+.++     +..-.++.++|+||| .||+|..||+|.+|+..+...   ...-..|..  .|+|+.|++|
T Consensus       296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d  375 (641)
T KOG0772|consen  296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD  375 (641)
T ss_pred             EecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence            99976543 22332     334467899999999 999999999999999754322   233355776  8999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-------ecCcEEEEeCCCCce
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDVYEAPTLNH  540 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-------~d~~i~iwd~~~~~~  540 (660)
                      |++|++-+.|+++++||++..+    .++.....-.++  ..-+.++|||+.++|++|       ..+.+.+||..+...
T Consensus       376 g~~LlSRg~D~tLKvWDLrq~k----kpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  376 GNYLLSRGFDDTLKVWDLRQFK----KPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             cchhhhccCCCceeeeeccccc----cchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence            9999999999999999999843    344311111111  356689999999999984       135799999999998


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      ++.+...  ...|..+.|+|.=+.|.+|+.||.++||-
T Consensus       450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEecCC--CceEEEEeecchhhheeeecCCCceEEEE
Confidence            8888653  78899999999999999999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=4.7e-27  Score=213.08  Aligned_cols=271  Identities=15%  Similarity=0.147  Sum_probs=215.7

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.+..+|.+|.+++.|.+..+|-..++   .++-.  +  .||++.|||+..+-+.+++++|+.|.++++||+++++...
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nG---erlGt--y--~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la   88 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGT--Y--DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA   88 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCC---ceeee--e--cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence            389999999999999999999987642   33333  3  3599999999999999999999999999999998887621


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeC------CcEEEEECC-------CCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE-------TFQTLATFA  412 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~d------g~I~iwd~~-------~~~~~~~~~  412 (660)
                                .|+              ...+|..+.|+  |++++.+.|      +.|.++|++       ..++...+.
T Consensus        89 ----------~~k--------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   89 ----------TWK--------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             ----------Eee--------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence                      222              55678899999  666665554      479999997       455678888


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 006126          413 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  490 (660)
Q Consensus       413 ~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~  490 (660)
                      .+...++.+-|.|-+ .|++|..||.|.+||+++|+. +..-+.|...|+.+.++||..++++++.|.+-++||.++-+.
T Consensus       145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence            888999999999999 999999999999999999854 455567999999999999999999999999999999999443


Q ss_pred             eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCCCc------------eeeeecCCCCCCCeEE
Q 006126          491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN------------HTSQLVPDKMDLPITY  555 (660)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iwd~~~~~------------~~~~~~~~~~~~~v~~  555 (660)
                      ++...      ..    .+|++.+++|....++.+  .+ ..|.-=+.+.|+            .+..++  .|-++|++
T Consensus       225 ~Kty~------te----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINs  292 (327)
T KOG0643|consen  225 LKTYT------TE----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINS  292 (327)
T ss_pred             EEEee------ec----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCcce
Confidence            33222      22    479999999987777763  22 223333333332            333343  37999999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEECCC
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      ++|+|+|+-.++|++||.|++.....
T Consensus       293 vAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  293 VAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eEECCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999999986553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=2e-26  Score=238.63  Aligned_cols=334  Identities=16%  Similarity=0.168  Sum_probs=261.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCC-CCeEEEEEecCCCEE-EEEECCCcEEEEeccCCce
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~-~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~  345 (660)
                      +.-+|--..+|.|..+|+|.|+++..   ...+..++     |. ++|+.++|..||+.+ ++|+..|.+.+||++..+.
T Consensus       208 ieqsPaLDVVaiG~~~G~ViifNlK~---dkil~sFk-----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl  279 (910)
T KOG1539|consen  208 IEQSPALDVVAIGLENGTVIIFNLKF---DKILMSFK-----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL  279 (910)
T ss_pred             eccCCcceEEEEeccCceEEEEEccc---CcEEEEEE-----ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence            37788888999999999999999986   34455544     54 899999999999755 5555679999999987665


Q ss_pred             eee----------------------eecccee--EEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcE
Q 006126          346 SLE----------------------EENVNME--SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKI  397 (660)
Q Consensus       346 ~~~----------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I  397 (660)
                      ...                      ....+.+  +.++|...|........+||..+..|+.|.   +..+.+++ |++.
T Consensus       280 ~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~  359 (910)
T KOG1539|consen  280 INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL  359 (910)
T ss_pred             eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence            322                      1122222  345565555443333455899999999998   77888888 8877


Q ss_pred             EEEECCC-------Ce--------EE---------------------------------------------------EEE
Q 006126          398 SIFSLET-------FQ--------TL---------------------------------------------------ATF  411 (660)
Q Consensus       398 ~iwd~~~-------~~--------~~---------------------------------------------------~~~  411 (660)
                      +.+++..       ++        .+                                                   ..+
T Consensus       360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L  439 (910)
T KOG1539|consen  360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL  439 (910)
T ss_pred             hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence            7776521       00        00                                                   000


Q ss_pred             -----cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe---eccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126          412 -----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLVSSGADAQLCV  482 (660)
Q Consensus       412 -----~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v  482 (660)
                           +.....+++++.++.| ..+.|+..|+|-+|++++|-....+   ..|.++|++++...-++.+++++.+|.+.+
T Consensus       440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf  519 (910)
T KOG1539|consen  440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF  519 (910)
T ss_pred             cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence                 0122567899999999 8899999999999999999888888   479999999999988999999999999999


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      ||.........     +.-+     ..+..+..+.....++. ..|-.|+++|+.+.+.++.+.+  |...|++++||||
T Consensus       520 w~f~~k~l~~~-----l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS~D  587 (910)
T KOG1539|consen  520 WDFKKKVLKKS-----LRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFSPD  587 (910)
T ss_pred             EecCCcceeee-----eccC-----CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeCCC
Confidence            99998543222     2223     46888888888888887 5788999999999999999976  7999999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEEeCC
Q 006126          562 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPL  633 (660)
Q Consensus       562 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw~~~  633 (660)
                      |+||++++.|++|++||+.++.++..+..         +.+  ++.+.|+| +|.+|||+..| .-|++|.=.
T Consensus       588 grWlisasmD~tIr~wDlpt~~lID~~~v---------d~~--~~sls~SP-ngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  588 GRWLISASMDSTIRTWDLPTGTLIDGLLV---------DSP--CTSLSFSP-NGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CcEEEEeecCCcEEEEeccCcceeeeEec---------CCc--ceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence            99999999999999999999999987754         333  45899999 89999999988 679999643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.1e-27  Score=239.93  Aligned_cols=272  Identities=18%  Similarity=0.225  Sum_probs=225.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++|+ ....+|.|. ...|.+|+...    +.+..+.  . .+.+.|+++.|+++|.+|++|..+|.|.|||....+...
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s----~~v~~l~--~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASS----GSVTELC--S-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCC----CceEEeE--e-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence            4777 334455444 35699999984    4444321  1 147899999999999999999999999999977665411


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEEEEcC
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLP  425 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp  425 (660)
                                           . +..+|...|-+++|.+..+.+|+ ++.|..+|+...+..-. +.+|...|..+.|++
T Consensus       254 ---------------------~-~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  254 ---------------------T-LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP  311 (484)
T ss_pred             ---------------------c-ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence                                 1 11138999999999988999999 99999999988765544 789999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEe--CCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      |+ ++|+|+.|+.+.|||.....++..+..|...|..++|+| ....||+|+  .|+.|++||..++..+..     +..
T Consensus       312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-----vdt  386 (484)
T KOG0305|consen  312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-----VDT  386 (484)
T ss_pred             CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-----ccc
Confidence            99 999999999999999988888999999999999999999 566788764  699999999999754433     233


Q ss_pred             ccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          502 GLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       502 ~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      +     +.|.++.|++..+.|++  | .++.|.||+..+.+.+..+.+  |...|..++++|||..+++|+.|.++++|+
T Consensus       387 g-----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  387 G-----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG--HTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             C-----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC--CcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            3     68999999999988877  4 678999999999998888876  789999999999999999999999999999


Q ss_pred             CCCC
Q 006126          579 TSTL  582 (660)
Q Consensus       579 ~~~~  582 (660)
                      +-..
T Consensus       460 ~f~~  463 (484)
T KOG0305|consen  460 LFDE  463 (484)
T ss_pred             ccCC
Confidence            8764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.1e-26  Score=235.93  Aligned_cols=270  Identities=12%  Similarity=0.105  Sum_probs=203.2

Q ss_pred             EEecCCCCc----eeeecccCCCCCCeEEEEEe-------------CCEEEEEe-CCcEEEEECCCCeEEEEE-------
Q 006126          357 QLYQPSSKL----VMTNDIAADPKDSISCFALR-------------GSHLFSAS-GGKISIFSLETFQTLATF-------  411 (660)
Q Consensus       357 ~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s-------------~~~l~s~~-dg~I~iwd~~~~~~~~~~-------  411 (660)
                      .+||..+..    +...+   -|...|+.+.-.             ...+++++ |++|++||+..+..-..+       
T Consensus       349 YvWDvrD~~kvgk~~s~l---yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~  425 (1080)
T KOG1408|consen  349 YVWDVRDVNKVGKCSSML---YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA  425 (1080)
T ss_pred             EEEeccccccccceeeee---eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence            677765433    22222   377777766432             24578888 999999999753211110       


Q ss_pred             ------------------------------cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126          412 ------------------------------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT  460 (660)
Q Consensus       412 ------------------------------~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~  460 (660)
                                                    -....++.+++.+|+| +|++|..-|.++||++..-+....++.|...|.
T Consensus       426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil  505 (1080)
T KOG1408|consen  426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL  505 (1080)
T ss_pred             hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE
Confidence                                          0123468999999999 999999999999999998888888999999999


Q ss_pred             EEEEeC---CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--cEEEE-EecCcEEEEe
Q 006126          461 CLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYE  534 (660)
Q Consensus       461 ~l~~sp---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~-~~d~~i~iwd  534 (660)
                      |+.|+.   ..++|++++.|+.|.+||...     ...+.....+|.   +.|+++.|.-+|  ..+++ |.|..|.+--
T Consensus       506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HS---ssITsvKFa~~gln~~MiscGADksimFr~  577 (1080)
T KOG1408|consen  506 CLEYSFPVLTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHS---SSITSVKFACNGLNRKMISCGADKSIMFRV  577 (1080)
T ss_pred             EEeecCchhhhHhhhhccCCceEEEEeccc-----ccchhhhhcccc---cceeEEEEeecCCceEEEeccCchhhheeh
Confidence            999976   357899999999999999976     334444778888   799999998877  56666 6887765543


Q ss_pred             CCCCceeeeecCCC---CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126          535 APTLNHTSQLVPDK---MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH  611 (660)
Q Consensus       535 ~~~~~~~~~~~~~~---~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s  611 (660)
                      .+.......+..+.   ....++.++..|..+++++++.|..|+||++.+|+....++..       +++.-..+.+...
T Consensus       578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-------~~~eG~lIKv~lD  650 (1080)
T KOG1408|consen  578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-------RDHEGDLIKVILD  650 (1080)
T ss_pred             hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-------ccCCCceEEEEEC
Confidence            33211111222111   1567899999999999999999999999999999999998843       2333335578999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          612 PLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       612 p~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                      | .|.|+|+...|.++.++|.-+|++...+....
T Consensus       651 P-SgiY~atScsdktl~~~Df~sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  651 P-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHS  683 (1080)
T ss_pred             C-CccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence            9 89999999999999999999999866555443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3.1e-27  Score=218.17  Aligned_cols=288  Identities=12%  Similarity=0.140  Sum_probs=226.0

Q ss_pred             ceeeEecCCCCEEEEEeCCCcEEEEeccCcCCC-------------cceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC
Q 006126          265 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-------------SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ  331 (660)
Q Consensus       265 ~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~  331 (660)
                      .++..|||||.++|+|+.|..|+|.|++.+-..             ......+|  ..|.++|.++.|+|....|++|+.
T Consensus       115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl--YDH~devn~l~FHPre~ILiS~sr  192 (430)
T KOG0640|consen  115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL--YDHVDEVNDLDFHPRETILISGSR  192 (430)
T ss_pred             eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh--hhccCcccceeecchhheEEeccC
Confidence            344699999999999999999999999721100             00111123  348999999999999999999999


Q ss_pred             CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE
Q 006126          332 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL  408 (660)
Q Consensus       332 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~  408 (660)
                      |++|++||+.......                  ..+. +  ....+|.++.|+  |++|+.|. ..++++||+++.++.
T Consensus       193 D~tvKlFDfsK~saKr------------------A~K~-~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf  251 (430)
T KOG0640|consen  193 DNTVKLFDFSKTSAKR------------------AFKV-F--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF  251 (430)
T ss_pred             CCeEEEEecccHHHHH------------------HHHH-h--hccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence            9999999986543200                  0110 1  245679999999  99999999 479999999999887


Q ss_pred             EEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-cC-CCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126          409 ATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQ-NRITCLAYSLSLNVLVSSGADAQLCV  482 (660)
Q Consensus       409 ~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~-~~v~~l~~sp~~~~l~s~s~dg~i~v  482 (660)
                      ..-.   .|...|+++.+++.| +.++|+.||.|++||--+++|+.++.. |. ..|.+..|..+|+++++.+.|..+++
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL  331 (430)
T ss_pred             eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence            6543   688999999999999 999999999999999989999988854 54 57889999999999999999999999


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                      |.+.+++.+....=. -..+..   ..-+...|+....|++.-  ..+.+.-||.+++..+..+.. +|.+.+..+.-||
T Consensus       332 WEi~t~R~l~~YtGA-g~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP  406 (430)
T KOG0640|consen  332 WEISTGRMLKEYTGA-GTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSP  406 (430)
T ss_pred             eeecCCceEEEEecC-Ccccch---hhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCC
Confidence            999997643321100 001111   123346678788888873  668899999999887766655 5899999999999


Q ss_pred             CCCEEEEEecCCeEEEEECC
Q 006126          561 DGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       561 dg~~l~sg~~dg~I~iwd~~  580 (660)
                      .+.-+++++.|..+++|--+
T Consensus       407 ~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  407 VEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCCceeeecccceeeeeeec
Confidence            99999999999999999654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-25  Score=197.80  Aligned_cols=304  Identities=14%  Similarity=0.128  Sum_probs=224.4

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      .+..|.+++|+|.|...+.|+..++.+|-....-......+.....     +..-.+.+   ...|.+.|+|.+|+  |+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~-----pp~v~~kr---~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ-----PPSVLCKR---NKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC-----CCeEEeee---ccccCccEEEEEecCccC
Confidence            3778999999999999999999999988654322110000000000     00000111   12699999999999  99


Q ss_pred             EEEEEe-CCcEEEEECCCCeE-----EEEEcCCCCCeEEEEEcCC----C-eEEEEe-CCCeEEEEeCCCCceeeEeecc
Q 006126          388 HLFSAS-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKGH  455 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~-----~~~~~~~~~~v~~v~~sp~----~-~l~s~~-~d~~I~iwd~~~~~~~~~~~~~  455 (660)
                      +|++|+ |.+|++.-.+...+     -..|..|.+.|..++|-.+    + .|++++ .|..|++-|...|+..+.+.+|
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh  182 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH  182 (350)
T ss_pred             eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence            999999 99999987654332     2356789999999999643    2 566554 5778999999999999999999


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  534 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd  534 (660)
                      .+.|.++ ++-+|-.+++|+.|.+|++||++-...+....-.  +.+..-.++.|.+++..|.|++|+++ .|....+||
T Consensus       183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCc--ccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            9999887 5557889999999999999999985443322111  11111112689999999999999997 889999999


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      ++-++.++.+.+  |...|.++.|||...|+++++.|..|++-|+... +...+...  +...|.+.   ++.+.|+|+ 
T Consensus       260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~--vv~ehkdk---~i~~rwh~~-  330 (350)
T KOG0641|consen  260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIM--VVAEHKDK---AIQCRWHPQ-  330 (350)
T ss_pred             eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceE--EEEeccCc---eEEEEecCc-
Confidence            999999999965  7999999999999999999999999999998742 22222110  01123232   447999995 


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q 006126          615 PNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .--+++.+.|.++.+|-++
T Consensus       331 d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 DFSFISSSADKTATLWALN  349 (350)
T ss_pred             cceeeeccCcceEEEeccC
Confidence            4667888999999999764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.6e-26  Score=210.98  Aligned_cols=244  Identities=16%  Similarity=0.185  Sum_probs=204.3

Q ss_pred             CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC--CCeEEEEeCCCCce
Q 006126          375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT  448 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~--d~~I~iwd~~~~~~  448 (660)
                      ....|.++.|+  |.++++++ |.++++||..+++.++++..+..++..+.|.... .++.++.  |.+|+..++.+.+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            46779999999  88999988 8899999999999999999998999999998777 6666655  88999999999999


Q ss_pred             eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126          449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  527 (660)
Q Consensus       449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d  527 (660)
                      ++.|.||...|+++..+|-+..+++++.|++|++||++..++.....+           ..-..++|.|+|-++|++ ..
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----------~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----------SGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----------CCCcceeECCCCcEEEEecCC
Confidence            999999999999999999999999999999999999997443222111           123368999999999996 44


Q ss_pred             CcEEEEeCCCC--ceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126          528 GQIDVYEAPTL--NHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       528 ~~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                      +.|++||++..  .+..++... ......+.+.|||||++|+.+...+.+++.|.-+|.....+..+.       ...-.
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~  234 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNL  234 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCc
Confidence            49999999863  445555443 236778899999999999999999999999999999988887542       22112


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      .....|.| |++++++|++||+|.+|+++++..
T Consensus       235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcE
Confidence            35789999 899999999999999999999976

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.7e-25  Score=237.00  Aligned_cols=286  Identities=11%  Similarity=0.052  Sum_probs=207.9

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcC------CCcceee--eecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEe
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLIN------EPSECRT--LLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK  339 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~------~~~~~~~--~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~  339 (660)
                      ..++|+..+++++.+.....|+..++.      +.++...  ..+  .||.+.|.+++|+| ++++|++|+.|++|++|+
T Consensus        27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l--~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd  104 (493)
T PTZ00421         27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL--LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG  104 (493)
T ss_pred             cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE--eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence            456676666777777666677654311      0111110  112  35999999999999 889999999999999999


Q ss_pred             ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC
Q 006126          340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP  415 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~  415 (660)
                      +.......              .....+..+  .+|...|.+++|+   +++|++++ |++|++||+.+++....+.+|.
T Consensus       105 i~~~~~~~--------------~~~~~l~~L--~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~  168 (493)
T PTZ00421        105 IPEEGLTQ--------------NISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS  168 (493)
T ss_pred             cCCCcccc--------------ccCcceEEe--cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence            87653200              001111111  1799999999999   36899999 9999999999999999999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-eEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCe
Q 006126          416 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVGWK  489 (660)
Q Consensus       416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s----~dg~i~vwd~~~~~  489 (660)
                      ..|.+++|+|+| .|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++..
T Consensus       169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            999999999999 9999999999999999999999999888765 44677999888877654    47899999998743


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  567 (660)
                          .++. ....+..  ..+....|++++.++++ + .|+.|++||+.+++.+..... .+..++..++|.|.-..=+ 
T Consensus       249 ----~p~~-~~~~d~~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~~dv-  319 (493)
T PTZ00421        249 ----SPYS-TVDLDQS--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWSLDT-  319 (493)
T ss_pred             ----Ccee-EeccCCC--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccccccc-
Confidence                2222 1121221  35666789999999888 5 599999999999988766543 2466788888888532211 


Q ss_pred             EecCCeEEEEECCCC
Q 006126          568 SCKSGHVKVFDTSTL  582 (660)
Q Consensus       568 g~~dg~I~iwd~~~~  582 (660)
                       ..--..++|.+...
T Consensus       320 -~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        320 -RKCEIARFYALTYH  333 (493)
T ss_pred             -cceeeeEEEEecCC
Confidence             11223466666543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.6e-27  Score=238.90  Aligned_cols=326  Identities=17%  Similarity=0.183  Sum_probs=245.2

Q ss_pred             CCCCEEEEEeCCCcEEEEeccCcCC-CcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeee
Q 006126          272 PDADSAVCAKSLEKSVNLKLQLINE-PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE  350 (660)
Q Consensus       272 pdg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~  350 (660)
                      |.+++|++|+.||.|++|+...... +.......++.  |.+.|..++...+|+.|+++|.|-+|++|+...+..     
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-----  107 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-----  107 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhh--hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-----
Confidence            6778999999999999999874221 11111223443  999999999999999999999999999998765531     


Q ss_pred             ccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe--EEE--------EEc-CCC
Q 006126          351 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLA--------TFA-NPP  415 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~--~~~--------~~~-~~~  415 (660)
                                    .++..+  +.|.+.|.|+++-   ...+|+|+ |+.|.+||++++.  .+.        .+. ++.
T Consensus       108 --------------~c~sti--r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen  108 --------------FCMSTI--RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             --------------hhHhhh--hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence                          122211  2699999999994   66888899 9999999999873  222        222 677


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126          416 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~  494 (660)
                      ..|++++.++.| .|++|+..+.+++||.++++.+..++||...|.++..++||+.+++++.||+|++||+..     .+
T Consensus       172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-----Qr  246 (735)
T KOG0308|consen  172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-----QR  246 (735)
T ss_pred             cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-----cc
Confidence            899999999999 999999999999999999999999999999999999999999999999999999999998     35


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG  572 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg  572 (660)
                      ++. ...-|.   ..|.++..+|+-..+++ +.||.|..=|+++. +....+..   ..+|..+..+...+-+-+++.|+
T Consensus       247 Cl~-T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtds  319 (735)
T KOG0308|consen  247 CLA-TYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTDS  319 (735)
T ss_pred             eee-eEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeeccc
Confidence            555 355566   46999999999999999 49999999999984 33333332   66777777775444446677889


Q ss_pred             eEEEEECCCCeeEEEe---------------e---cccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          573 HVKVFDTSTLELRCQI---------------N---LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       573 ~I~iwd~~~~~~~~~~---------------~---~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      .|+-|...-...+...               .   .+.....|  +..+.  ..+.-. |.++++|=..+|.+.+||+..
T Consensus       320 ~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai~--k~~mL~-dkRhVlTkDa~gnv~lwDIl~  394 (735)
T KOG0308|consen  320 SIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAIK--KHAMLN-DKRHVLTKDAKGNVALWDILA  394 (735)
T ss_pred             cceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chhhh--hhhhhc-CcceEeeecCCCCEEEEEeee
Confidence            9998876532111000               0   01111222  11111  233333 678899999999999999987


Q ss_pred             Cce
Q 006126          635 SEV  637 (660)
Q Consensus       635 ~~~  637 (660)
                      ++.
T Consensus       395 ~~~  397 (735)
T KOG0308|consen  395 CVK  397 (735)
T ss_pred             eee
Confidence            643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.5e-28  Score=226.94  Aligned_cols=286  Identities=15%  Similarity=0.177  Sum_probs=225.0

Q ss_pred             ccCCCC-CCceeecCCCCceeeEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCE
Q 006126          248 SSGDDS-NDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF  325 (660)
Q Consensus       248 ~~g~~~-v~~~~~~~~~~~~~~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~  325 (660)
                      +.||.+ |..+           +-.|.. ..+++|+.||.|+|||+..    ..+. .++..  |.+.|..+++..  ..
T Consensus        62 L~gHrdGV~~l-----------akhp~~ls~~aSGs~DG~VkiWnlsq----R~~~-~~f~A--H~G~V~Gi~v~~--~~  121 (433)
T KOG0268|consen   62 LDGHRDGVSCL-----------AKHPNKLSTVASGSCDGEVKIWNLSQ----RECI-RTFKA--HEGLVRGICVTQ--TS  121 (433)
T ss_pred             ccccccccchh-----------hcCcchhhhhhccccCceEEEEehhh----hhhh-heeec--ccCceeeEEecc--cc
Confidence            467777 4443           445555 5789999999999999973    3332 23544  899999999987  56


Q ss_pred             EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECC
Q 006126          326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLE  403 (660)
Q Consensus       326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~  403 (660)
                      ++++|.|.+|+.|.+.....           ..+.              ....+..+.-+  +..+++ +...|.|||..
T Consensus       122 ~~tvgdDKtvK~wk~~~~p~-----------~til--------------g~s~~~gIdh~~~~~~FaT-cGe~i~IWD~~  175 (433)
T KOG0268|consen  122 FFTVGDDKTVKQWKIDGPPL-----------HTIL--------------GKSVYLGIDHHRKNSVFAT-CGEQIDIWDEQ  175 (433)
T ss_pred             eEEecCCcceeeeeccCCcc-----------eeee--------------ccccccccccccccccccc-cCceeeecccc
Confidence            89999999999998765321           1111              23344555555  334444 35579999999


Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126          404 TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  481 (660)
Q Consensus       404 ~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  481 (660)
                      ...+++.+.-....|.++.|+|..  .|++|+.|+.|.+||++++.+++++. -...-+.|+|+|.+-.+++|+.|..++
T Consensus       176 R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY  254 (433)
T KOG0268|consen  176 RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLY  254 (433)
T ss_pred             cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccce
Confidence            999999999888889999999988  88999999999999999999888775 345567899999888899999999999


Q ss_pred             EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126          482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                      .||++.-    ..++. ...+|.   +.|.++.|||.|+-+++ |.|.+|+||.++.+.....+... .-..|.++.||-
T Consensus       255 ~~DmR~l----~~p~~-v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~  325 (433)
T KOG0268|consen  255 TYDMRNL----SRPLN-VHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSM  325 (433)
T ss_pred             ehhhhhh----cccch-hhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEec
Confidence            9999873    35555 667887   79999999999999999 69999999999887765555332 256799999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          561 DGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       561 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      |.+|+++|++|+.|++|.....+.+..+.
T Consensus       326 Dskyi~SGSdd~nvRlWka~Aseklgv~t  354 (433)
T KOG0268|consen  326 DSKYIISGSDDGNVRLWKAKASEKLGVIT  354 (433)
T ss_pred             cccEEEecCCCcceeeeecchhhhcCCCC
Confidence            99999999999999999987766554443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8e-28  Score=226.76  Aligned_cols=289  Identities=11%  Similarity=0.132  Sum_probs=222.9

Q ss_pred             CCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126          308 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-  385 (660)
                      .||.++|.|++=+|.. ..+++|+.||.|++||+....+.                     ..+  ..|.+.|..+++. 
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~---------------------~~f--~AH~G~V~Gi~v~~  119 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI---------------------RTF--KAHEGLVRGICVTQ  119 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh---------------------hee--ecccCceeeEEecc
Confidence            3599999999999987 78999999999999998765541                     111  1699999999999 


Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      +..+-+|.|.+|+.|.+.- .+.+++.+ ...+..+.-+..+ .+++||.+  |.|||..-..++..+.--...|.++.|
T Consensus       120 ~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkf  195 (433)
T KOG0268|consen  120 TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKF  195 (433)
T ss_pred             cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEec
Confidence            5555444599999999874 45555543 3345566666666 88888764  889999888899998877888999999


Q ss_pred             eCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc-ee
Q 006126          465 SLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-HT  541 (660)
Q Consensus       465 sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~-~~  541 (660)
                      +|... .|++++.|+.|.+||++++.......+.          ..-+.++|+|.+-.++++ .|..++.||++... ++
T Consensus       196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  196 NPVETSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             CCCcchheeeeccCCceEEEecccCCccceeeee----------ccccceecCccccceeeccccccceehhhhhhcccc
Confidence            99664 5667779999999999997655433333          345689999966666664 88999999998754 44


Q ss_pred             eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          542 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ..+.  +|...|.++.|||.|+-+++|+.|.+|+||.++.+.....+..         ...-.+.||.|+. |.+++++|
T Consensus       266 ~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---------kRMq~V~~Vk~S~-Dskyi~SG  333 (433)
T KOG0268|consen  266 NVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---------KRMQHVFCVKYSM-DSKYIISG  333 (433)
T ss_pred             hhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---------hhhheeeEEEEec-cccEEEec
Confidence            5554  4789999999999999999999999999999998875555432         2223366999999 89999999


Q ss_pred             eCCCeEEEEeCCCCceeccCCCCcc
Q 006126          622 LTNGRVHVIEPLESEVEWGKLPFTD  646 (660)
Q Consensus       622 s~Dg~v~iw~~~~~~~~w~~~~~~~  646 (660)
                      |+|+.|++|.....+. .++..+.|
T Consensus       334 Sdd~nvRlWka~Asek-lgv~t~rE  357 (433)
T KOG0268|consen  334 SDDGNVRLWKAKASEK-LGVITPRE  357 (433)
T ss_pred             CCCcceeeeecchhhh-cCCCChhH
Confidence            9999999999876543 34444433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-25  Score=196.12  Aligned_cols=292  Identities=14%  Similarity=0.121  Sum_probs=227.4

Q ss_pred             eecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcC----------CCcceeeeecCCCCCCCCeEEEEEecCCCEEE
Q 006126          258 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN----------EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV  327 (660)
Q Consensus       258 ~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~  327 (660)
                      .+++....+++.|.|.|...+.|+...+.+|.-.....          .+..+... -..+ |.+.|.|.+|||+|+.|+
T Consensus        28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k-r~kh-hkgsiyc~~ws~~gelia  105 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK-RNKH-HKGSIYCTAWSPCGELIA  105 (350)
T ss_pred             EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee-eccc-cCccEEEEEecCccCeEE
Confidence            45566666778999999999999999999987543211          11111111 1112 899999999999999999


Q ss_pred             EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEE
Q 006126          328 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISI  399 (660)
Q Consensus       328 s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~i  399 (660)
                      +|+.|++|++..+.......               +|.-+...   -|.+.|..++|-      +..|++++  |..|.+
T Consensus       106 tgsndk~ik~l~fn~dt~~~---------------~g~dle~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNA---------------TGHDLEFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             ecCCCceEEEEecccccccc---------------cCcceeee---ecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            99999999987655443311               12111111   388999999997      55788887  677888


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--c-----CCCeEEEEEeCCCCEE
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--H-----QNRITCLAYSLSLNVL  471 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~-----~~~v~~l~~sp~~~~l  471 (660)
                      -|..+|+....+.+|.+.|.++ ++-+| .+++|+.|.+|++||++-..++.++..  |     .+.|.+++..|.|++|
T Consensus       168 tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll  246 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL  246 (350)
T ss_pred             eecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence            8999999999999999998765 45567 999999999999999998888877642  2     3578999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce---eeeecCC
Q 006126          472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPD  547 (660)
Q Consensus       472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~  547 (660)
                      ++|-.|....+||++.++     .++ .+..|.   ..|.++.|+|...|+++ +.|..|++-|+. |..   +..+...
T Consensus       247 ~sg~~dssc~lydirg~r-----~iq-~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~  316 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIRGGR-----MIQ-RFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVA  316 (350)
T ss_pred             eeccCCCceEEEEeeCCc-----eee-eeCCCc---cceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEE
Confidence            999999999999999964     444 445666   79999999999999999 599999999985 322   2222233


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      .|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus       317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            578889999999999889999999999999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.1e-27  Score=227.65  Aligned_cols=274  Identities=15%  Similarity=0.119  Sum_probs=222.6

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .+.|-++...|++|+.|..|++|+..+.+  .... -+|.+  ..++|..+.|.+++.++++++.|+.+++|++..... 
T Consensus       180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~-~tLaG--s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~-  253 (459)
T KOG0288|consen  180 DVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELI-STLAG--SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL-  253 (459)
T ss_pred             eeEEccCcchhhhcchhhhhhhhhcccch--hhhh-hhhhc--cCCCcceeeecCCCceEEeecCCCceeeeeccchhh-
Confidence            34888999999999999999999998522  1111 12433  578899999999999999999999999998766543 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE-EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~-l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                                          +.++.  ||++.|+++.|. ++. +++|+ |.+|+.||+....|.+++-. ...+..|..
T Consensus       254 --------------------~~TLs--GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~  310 (459)
T KOG0288|consen  254 --------------------RHTLS--GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVC  310 (459)
T ss_pred             --------------------hhhhc--ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEe
Confidence                                22222  799999999999 444 99999 99999999999888877642 233445555


Q ss_pred             cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      +  . .+++|..|+.|+.||.++..+......+. .|+++..+++|..+.+++.|.++.+.|+++.+........-...+
T Consensus       311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a  387 (459)
T KOG0288|consen  311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA  387 (459)
T ss_pred             c--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence            4  4 78999999999999999999998888665 999999999999999999999999999999554322222212222


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                           ...+.+.|||++.|+++ |.||.|+||++.++++...+........|++++|+|.|..+++++.++.+.+|
T Consensus       388 -----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  388 -----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence                 35788999999999999 59999999999999998888775434479999999999999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=209.03  Aligned_cols=247  Identities=15%  Similarity=0.176  Sum_probs=211.0

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK  446 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~  446 (660)
                      +|...|.+++|+  |..|++|+ |+++.+|++...+.....  .+|...|-.++|+|..  .+++++.|.+|++||++++
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~   97 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG   97 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence            689999999999  99999999 999999999887555443  4888899999999987  9999999999999999999


Q ss_pred             ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E
Q 006126          447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I  525 (660)
Q Consensus       447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~  525 (660)
                      ++........+.+ -+.|+|+|.++++++.|..|.+.|.++.+........          ..+..++|+.++..++. .
T Consensus        98 k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----------~e~ne~~w~~~nd~Fflt~  166 (313)
T KOG1407|consen   98 KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----------FEVNEISWNNSNDLFFLTN  166 (313)
T ss_pred             cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----------ceeeeeeecCCCCEEEEec
Confidence            9998887555554 4679999999999999999999999985544333333          46788999977777666 5


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP  605 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~  605 (660)
                      ..|+|.|......++++++..  |.....++.|+|+|+++|+|+.|..+.+||+..--++..+...        +-+|. 
T Consensus       167 GlG~v~ILsypsLkpv~si~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--------dwpVR-  235 (313)
T KOG1407|consen  167 GLGCVEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--------DWPVR-  235 (313)
T ss_pred             CCceEEEEecccccccccccc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--------cCceE-
Confidence            779999999999999999875  7899999999999999999999999999999887777666532        55566 


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          606 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                       .++|+. ||++||+||+|..|-|=++.+|+..|..+..
T Consensus       236 -TlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  236 -TLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             -EEEecc-CcceeeccCccceEEeEecccCCeEEEeecc
Confidence             899999 8999999999999999999999988876543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.2e-26  Score=234.55  Aligned_cols=237  Identities=17%  Similarity=0.247  Sum_probs=205.2

Q ss_pred             CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceee
Q 006126          375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      +...|+++.|+  |.+|++|. +|.|.|||..+.+.++.+.+ |...|.+++|+.. .+.+|+.|+.|..+|++..+...
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhh
Confidence            37889999999  99999999 99999999999999999998 9999999999832 89999999999999999877655


Q ss_pred             E-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEEE---
Q 006126          451 K-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI---  525 (660)
Q Consensus       451 ~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~---  525 (660)
                      . +.+|...|..++|++|+.++++|+.|+.+.|||...     ..+.. ....|.   +.|..++|+|-. ..||+|   
T Consensus       295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-----~~p~~-~~~~H~---aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-----PEPKF-TFTEHT---AAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-----ccccE-EEeccc---eeeeEeeeCCCccCceEEcCCC
Confidence            5 888999999999999999999999999999999965     23334 466787   799999999954 456663   


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE--EecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL  603 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--g~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v  603 (660)
                      .|++|++||..++..+..+..   ...|.++.|++..+-|++  |..++.|.||+..+.+++..+.       || ... 
T Consensus       366 ~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-------gH-~~R-  433 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-------GH-TSR-  433 (484)
T ss_pred             cccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-------CC-cce-
Confidence            789999999999999888743   789999999999877765  4456889999999988888876       55 333 


Q ss_pred             ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                       ++.++++| ||..+++|+.|.++++|++-..
T Consensus       434 -Vl~la~SP-dg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  434 -VLYLALSP-DGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             -eEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence             55999999 8999999999999999999764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=4.9e-26  Score=231.45  Aligned_cols=274  Identities=15%  Similarity=0.181  Sum_probs=227.1

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE-EEEe-
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR-  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s-  385 (660)
                      .||...|..+++.+.. .++++|.||++++|+-.....                     +......+|.+.|.+ +++. 
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~~~g~i~~~i~y~e   68 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEGPKGFIANSICYAE   68 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecccCcceeeccceecc
Confidence            3599999999877655 689999999999998654433                     111111256666665 6666 


Q ss_pred             --CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126          386 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL  462 (660)
Q Consensus       386 --~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l  462 (660)
                        +..+++|+ |++|.+|......+..++.+|...|.|++...++.+++||.|.++++|-.  +++...+.+|+..|+++
T Consensus        69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv  146 (745)
T KOG0301|consen   69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAV  146 (745)
T ss_pred             ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeee
Confidence              45688888 99999999999999999999999999999887778999999999999965  67788899999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~  542 (660)
                      ..-|++ .+++|+.|.+|++|.-.+       .++ .+.+|.   ..|+.+++-+++.++-++.||.|++|++ +|.++.
T Consensus       147 ~~l~e~-~~vTgsaDKtIklWk~~~-------~l~-tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~  213 (745)
T KOG0301|consen  147 ASLPEN-TYVTGSADKTIKLWKGGT-------LLK-TFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL  213 (745)
T ss_pred             eecCCC-cEEeccCcceeeeccCCc-------hhh-hhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence            999988 889999999999998643       444 577898   7999999999988888899999999999 888888


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .+.+  |...|++++...++..++++++|++++||+..  ++.+.+..+        ...+|  ++.+-+ +| -+++|+
T Consensus       214 ~~~g--htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiW--sa~~L~-Ng-DIvvg~  277 (745)
T KOG0301|consen  214 EMHG--HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIW--SAKVLL-NG-DIVVGG  277 (745)
T ss_pred             eeec--cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceE--EEEEee-CC-CEEEec
Confidence            8855  79999999988899999999999999999987  677777643        33466  777776 55 467888


Q ss_pred             CCCeEEEEeCCC
Q 006126          623 TNGRVHVIEPLE  634 (660)
Q Consensus       623 ~Dg~v~iw~~~~  634 (660)
                      .||.||||....
T Consensus       278 SDG~VrVfT~~k  289 (745)
T KOG0301|consen  278 SDGRVRVFTVDK  289 (745)
T ss_pred             cCceEEEEEecc
Confidence            899999999873

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.7e-26  Score=220.00  Aligned_cols=291  Identities=13%  Similarity=0.082  Sum_probs=231.7

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCC-----CCceeeecccCCCCCCeEEEEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-----SKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      |.-+|.+|+++|++++.++++.+|+|.-|++.+++...         .+|...     .+...+..- .+|...+.+++.
T Consensus       141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~---------~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av  210 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDR---------YIIERDEVLKSHGNPLKESR-KGHVKEILTLAV  210 (479)
T ss_pred             ccCcceEEEeeccccceeecCCCcceeeeehhcCcccc---------cccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence            89999999999999999999999999999998887421         122211     111111111 268899999999


Q ss_pred             e--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126          385 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT  460 (660)
Q Consensus       385 s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~  460 (660)
                      +  |+||++|+ |..|.||+.++.+.++.+.+|.+.|.+++|-... .+++++.|++|++|+++....+.++.+|++.|.
T Consensus       211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL  290 (479)
T ss_pred             cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence            9  99999999 9999999999999999999999999999998777 999999999999999999888999999999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce
Q 006126          461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH  540 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~  540 (660)
                      ++....-++.+-+|+.|+++++|++...       .+.++.++.   +.+.|++|-.+..++..+.+|.|.+|++.+.++
T Consensus       291 ~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  291 GIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGE---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             eechhcccceEEeccccceeEEEecccc-------ceeeeeCCC---CCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence            9998888888888889999999999542       222556666   689999999776555557999999999999998


Q ss_pred             eeeecCCCC----------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCC----eeEEEeecccccCCCCcCcccceE
Q 006126          541 TSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL----ELRCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       541 ~~~~~~~~~----------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                      +.+....++          ...|++++..|..+++++|+.+|.|++|.+..+    .++..+..         .+.  ++
T Consensus       361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---------~Gf--VN  429 (479)
T KOG0299|consen  361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---------VGF--VN  429 (479)
T ss_pred             eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---------ccE--EE
Confidence            877654321          237899999999999999999999999999987    23333322         223  44


Q ss_pred             EEEEecCCCCEEEE-EeCCCeEEEEeC
Q 006126          607 VIAAHPLEPNRIAL-GLTNGRVHVIEP  632 (660)
Q Consensus       607 ~v~~sp~d~~~l~s-~s~Dg~v~iw~~  632 (660)
                      +++|++ +|+++++ .+....+-=|-.
T Consensus       430 sl~f~~-sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  430 SLAFSN-SGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             EEEEcc-CCCEEEEecccccccceeeE
Confidence            999999 7885554 445444444443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.5e-26  Score=209.98  Aligned_cols=286  Identities=13%  Similarity=0.128  Sum_probs=233.9

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ||.++||.++-......+.+++.|.+.+||.++++.+                     +..+.  ||.+.|++++|+  +
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C---------------------L~~Y~--GH~GSVNsikfh~s~  202 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC---------------------LATYT--GHTGSVNSIKFHNSG  202 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccc---------------------eeeec--ccccceeeEEecccc
Confidence            4999999999988888899999999999998877765                     22222  899999999999  7


Q ss_pred             CEEEEEe-CCcEEEEEC------CC------------------------------C----eEEEEEcCCCCCeEEEEEcC
Q 006126          387 SHLFSAS-GGKISIFSL------ET------------------------------F----QTLATFANPPPIATYFILLP  425 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~------~~------------------------------~----~~~~~~~~~~~~v~~v~~sp  425 (660)
                      .++++++ |++..||..      ..                              +    .++..+.+|...|.+..|-.
T Consensus       203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~  282 (481)
T KOG0300|consen  203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA  282 (481)
T ss_pred             ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence            7888998 999999962      11                              0    13445678999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126          426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  504 (660)
                      .| .+++++.|.+..+||+++|..+..+.||....+.+.-+|..+++++.+.|.+.++||++..    -..+. ++.||.
T Consensus       283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----I~sV~-VFQGHt  357 (481)
T KOG0300|consen  283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----IQSVA-VFQGHT  357 (481)
T ss_pred             CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----cceee-eecccc
Confidence            99 9999999999999999999999999999999999999999999999999999999999862    23344 788999


Q ss_pred             CCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          505 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       505 ~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                         ..|+++.|..+.+.+..+.|.+|++||+++.+ ++.++..   ..+++.++.+..+..|+.--.+..|++||++..+
T Consensus       358 ---dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  358 ---DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             ---cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence               79999999988765555789999999999764 5667754   7889999999999999999999999999998654


Q ss_pred             eEEEeecccccCCCCcCcccceEEEEEecCCC--CEEEEEeCCCeEEEEeCCCC
Q 006126          584 LRCQINLTAYAQPGTISLELYPLVIAAHPLEP--NRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~--~~l~s~s~Dg~v~iw~~~~~  635 (660)
                       +..++.  ....|| ...  +.|++|.. +.  .-|++||-|..+.=|++...
T Consensus       432 -laRlPr--tsRqgH-rRM--V~c~AW~e-ehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  432 -LARLPR--TSRQGH-RRM--VTCCAWLE-EHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             -cccCCc--cccccc-cee--eeeeeccc-cCcccccccccccceeeeeEeccc
Confidence             333331  122355 222  55999975 32  34889999999999998764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.9e-25  Score=215.32  Aligned_cols=272  Identities=14%  Similarity=0.195  Sum_probs=223.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ....|....+++|+.|.++.++|...    .++... +++  |...|+.+.|+|+...+++++.|..|+||.......  
T Consensus       225 ld~~~s~~~ilTGG~d~~av~~d~~s----~q~l~~-~~G--h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--  295 (506)
T KOG0289|consen  225 LDIIPSSSKILTGGEDKTAVLFDKPS----NQILAT-LKG--HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--  295 (506)
T ss_pred             EeecCCCCcceecCCCCceEEEecch----hhhhhh-ccC--cceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence            35566667899999999999999873    444432 554  999999999999999999999999999998654432  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFI  422 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~  422 (660)
                                      ....     ..|..+|+.+..+  |+||++++ ||+..+.|+++|.++.....  ..-.+++.+
T Consensus       296 ----------------~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  296 ----------------PTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             ----------------cccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence                            1111     1599999999999  99999999 89999999999998877654  334579999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      |+||| .|.+|..|+.|++||+.++..+..|.+|.++|..++|+.+|.+|++++.|+.|++||+|.-+.     ++++..
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----~kt~~l  429 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----FKTIQL  429 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----cceeec
Confidence            99999 999999999999999999999999999999999999999999999999999999999998543     232222


Q ss_pred             ccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          502 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       502 ~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      ...   ..+.++.|.+.|.+|+. |.|=.|++++-.+.  .++..+  ..|.+..+.+.|....+++++++.|..++++.
T Consensus       430 ~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  430 DEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             ccc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeeccchhheEEee
Confidence            222   36999999999999999 56667777774443  344444  34678899999999999999999999988876


Q ss_pred             C
Q 006126          579 T  579 (660)
Q Consensus       579 ~  579 (660)
                      +
T Consensus       505 ~  505 (506)
T KOG0289|consen  505 L  505 (506)
T ss_pred             c
Confidence            4

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.9e-25  Score=215.43  Aligned_cols=278  Identities=12%  Similarity=0.096  Sum_probs=230.2

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ...+.++...|....+++|+.|..+.++|...++                     ++..+.  ||...|+.+.++  ...
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------~l~~~~--Gh~kki~~v~~~~~~~~  275 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------ILATLK--GHTKKITSVKFHKDLDT  275 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhh---------------------hhhhcc--CcceEEEEEEeccchhh
Confidence            4578888888887889999999999887765554                     333222  899999999999  667


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEE
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAY  464 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~  464 (660)
                      +++++ |..|++|.............|..+|+.+..+|.| +|++++.|++..+.|+++|.++.....  ..-.+++.+|
T Consensus       276 v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f  355 (506)
T KOG0289|consen  276 VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF  355 (506)
T ss_pred             eeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence            78888 9999999998888888888999999999999999 999999999999999999998877654  2345899999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~  543 (660)
                      +|||..|.+|+.||.+++||+.++.     .+. .+.+|.   ++|..++|+.+|.+|++ +.|+.|++||++..+..++
T Consensus       356 HpDgLifgtgt~d~~vkiwdlks~~-----~~a-~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt  426 (506)
T KOG0289|consen  356 HPDGLIFGTGTPDGVVKIWDLKSQT-----NVA-KFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT  426 (506)
T ss_pred             cCCceEEeccCCCceEEEEEcCCcc-----ccc-cCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence            9999999999999999999999854     222 466788   89999999999999999 5888899999999988888


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC--CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      +.... ...+.+++|++.|.+|+.++.|=.|++++-.+  ...+..+..+        .+.  .+++.|.. +..+++++
T Consensus       427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--------sg~--st~v~Fg~-~aq~l~s~  494 (506)
T KOG0289|consen  427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--------SGL--STGVRFGE-HAQYLAST  494 (506)
T ss_pred             eeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--------ccc--cceeeecc-cceEEeec
Confidence            87753 55899999999999999998887777777544  3344443322        222  33889988 78999999


Q ss_pred             eCCCeEEEEeC
Q 006126          622 LTNGRVHVIEP  632 (660)
Q Consensus       622 s~Dg~v~iw~~  632 (660)
                      |.|..++++.+
T Consensus       495 smd~~l~~~a~  505 (506)
T KOG0289|consen  495 SMDAILRLYAL  505 (506)
T ss_pred             cchhheEEeec
Confidence            99999998864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-25  Score=218.89  Aligned_cols=268  Identities=15%  Similarity=0.188  Sum_probs=212.8

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCccee-----------eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-----------TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  337 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~v  337 (660)
                      .++||+++.++++.+|+|.=|+...++....+.           ....+..+|...|.+++.|+||+|||+|+.|..|.|
T Consensus       149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I  228 (479)
T KOG0299|consen  149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI  228 (479)
T ss_pred             EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence            899999999999999999999998654321111           111111268999999999999999999999999999


Q ss_pred             EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126          338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  414 (660)
Q Consensus       338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~  414 (660)
                      |+.++.+.                     ++.+.  +|.+.|.+++|.  .+.+++++ |..|++|+++....+.++-+|
T Consensus       229 w~~~t~eh---------------------v~~~~--ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  229 WDCDTLEH---------------------VKVFK--GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             ecCcccch---------------------hhccc--ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence            88776653                     22111  799999999999  55788888 999999999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  493 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~  493 (660)
                      ...|..+....-+ .+-+|+.|+++++|++. .+....+.+|.+.+-|++|-. ...+++|+.||.|.+|++...+.+  
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkpl--  361 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPL--  361 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCce--
Confidence            9999999888877 77777799999999994 445567888999999999975 457899999999999999884433  


Q ss_pred             eeeeeeeeccCCC--------CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC----ceeeeecCCCCCCCeEEEEEcc
Q 006126          494 KFLHSFQTGLVPE--------TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       494 ~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                         .+....|.-.        ..+|++++..|....+++| .+|.|++|-+.++    .++..+.   -.+.|++++|++
T Consensus       362 ---f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~  435 (479)
T KOG0299|consen  362 ---FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSN  435 (479)
T ss_pred             ---eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEcc
Confidence               2222222110        1389999999999999994 8999999999877    3444443   378899999999


Q ss_pred             CCCEEEEEe
Q 006126          561 DGKCIYVSC  569 (660)
Q Consensus       561 dg~~l~sg~  569 (660)
                      +|+++++|.
T Consensus       436 sgk~ivagi  444 (479)
T KOG0299|consen  436 SGKRIVAGI  444 (479)
T ss_pred             CCCEEEEec
Confidence            999777663

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=7.4e-25  Score=233.01  Aligned_cols=223  Identities=14%  Similarity=0.150  Sum_probs=176.7

Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCc--------eeeEeeccCCCeEEEE
Q 006126          394 GGKISIFSLETFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLA  463 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~--------~~~~~~~~~~~v~~l~  463 (660)
                      ++.|++|+..+...+..+.+|...|.+++|+|+ + +|++|+.|++|++||+.++.        .+..+.+|...|.+++
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa  132 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID  132 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence            688999999888888899999999999999997 5 99999999999999997642        3446788999999999


Q ss_pred             EeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee
Q 006126          464 YSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT  541 (660)
Q Consensus       464 ~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~  541 (660)
                      |+|++.. +++++.|++|++||+++++..     ..+ . |.   ..|.+++|+|+|.+|++ +.|+.|+|||+++++.+
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~-----~~i-~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIENEKRA-----FQI-N-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCcEE-----EEE-e-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence            9998876 578999999999999986532     111 1 22   47999999999999998 58999999999999998


Q ss_pred             eeecCCCCCCCeE-----EEEEccCCCEEEEEecCC----eEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126          542 SQLVPDKMDLPIT-----YATYSCDGKCIYVSCKSG----HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAH  611 (660)
Q Consensus       542 ~~~~~~~~~~~v~-----~~~~s~dg~~l~sg~~dg----~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s  611 (660)
                      .++..  |.+.+.     ...|++++.+|++++.|+    .|+|||+++ ++++..+..         +....++...|.
T Consensus       203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l---------d~~~~~L~p~~D  271 (568)
T PTZ00420        203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI---------DNASAPLIPHYD  271 (568)
T ss_pred             EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe---------cCCccceEEeee
Confidence            88865  454432     234568999999988774    799999995 555555432         111222234555


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          612 PLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       612 p~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ++++.++++|+.|++|++|++..+..
T Consensus       272 ~~tg~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        272 ESTGLIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             CCCCCEEEEEECCCeEEEEEccCCcE
Confidence            65789999999999999999987643

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.6e-24  Score=228.90  Aligned_cols=221  Identities=11%  Similarity=0.066  Sum_probs=169.8

Q ss_pred             CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe--------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEE
Q 006126          374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TLATFANPPPIATYFILLPQD--LFAFGFDDSSIL  439 (660)
Q Consensus       374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~--------~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~  439 (660)
                      +|.+.|.+++|+   +.+|++|+ ||+|++||+.++.        ++..+.+|...|.+++|+|++  .+++++.|++|+
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr  151 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN  151 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence            799999999999   57999999 9999999997642        344677899999999999998  567999999999


Q ss_pred             EEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE-----EE
Q 006126          440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-----IQ  514 (660)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~  514 (660)
                      +||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++..     . ...+|.   +.+.+     ..
T Consensus       152 IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-----~-tl~gH~---g~~~s~~v~~~~  221 (568)
T PTZ00420        152 IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-----S-SFHIHD---GGKNTKNIWIDG  221 (568)
T ss_pred             EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-----E-EEeccc---CCceeEEEEeee
Confidence            99999998877776 6678999999999999999999999999999996533     2 244565   33322     34


Q ss_pred             EecCCcEEEE-Eec----CcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126          515 FHPDQIHLLS-IHE----GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       515 ~sp~~~~l~~-~~d----~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~  588 (660)
                      |++++.++++ |.+    ++|+|||+++ ++++..+..+.+.+.+......++|.++++|+.|+.|++|++..+.. ..+
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l  300 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKV  300 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eee
Confidence            5689888888 655    3799999985 56666654433334444444456789999999999999999987743 222


Q ss_pred             ecccccCCCCcCcccceEEEEEecC
Q 006126          589 NLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       589 ~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      ..      .++..+..  +++|.|+
T Consensus       301 ~~------~~s~~p~~--g~~f~Pk  317 (568)
T PTZ00420        301 NE------YKSCSPFR--SFGFLPK  317 (568)
T ss_pred             cc------cccCCCcc--ceEEccc
Confidence            21      11234455  7899994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.7e-25  Score=204.13  Aligned_cols=303  Identities=15%  Similarity=0.149  Sum_probs=221.8

Q ss_pred             cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcC-CCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      +.+++||.+ |..+           +||.||++||+++.|++|++|++.+-. ...++....++    -+..+.++|+||
T Consensus        79 ~~~LKgH~~~vt~~-----------~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapD  143 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDV-----------AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPD  143 (420)
T ss_pred             hhhhhccCCceeee-----------EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCC
Confidence            345788887 5555           999999999999999999999997521 11233333333    236788999999


Q ss_pred             CCEEEEEE-CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 006126          323 GDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS  398 (660)
Q Consensus       323 g~~l~s~s-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~  398 (660)
                      -+-++... ...++++|.+...+.    ........-||.-       .+.+.|.-.+..+...  +.+|++++ |..|.
T Consensus       144 c~s~vv~~~~g~~l~vyk~~K~~d----G~~~~~~v~~D~~-------~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~  212 (420)
T KOG2096|consen  144 CKSVVVSVKRGNKLCVYKLVKKTD----GSGSHHFVHIDNL-------EFERKHQVDIINIGIAGNAKYIMSASLDTKIC  212 (420)
T ss_pred             cceEEEEEccCCEEEEEEeeeccc----CCCCccccccccc-------ccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence            87555544 456888887654321    1112222233311       0222466667776666  77999999 99999


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC---CC-----ceeeEeeccCCCeEEEEEeCCCC
Q 006126          399 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLAYSLSLN  469 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~---~~-----~~~~~~~~~~~~v~~l~~sp~~~  469 (660)
                      +|++. |+.+..+......-+..+.+|+| .+++++.--.|++|.+-   .|     ..+..++||...|..++|+++.+
T Consensus       213 lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  213 LWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             EEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence            99999 99999988777777889999999 99999999999999863   22     23456789999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec----cCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec
Q 006126          470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG----LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~  545 (660)
                      .+++.+.||++++||+.-.-.... ....+..+    |.. .+....++++|+|..|+.+....+++|..++|+....+.
T Consensus       292 r~vtvSkDG~wriwdtdVrY~~~q-Dpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e  369 (420)
T KOG2096|consen  292 RAVTVSKDGKWRIWDTDVRYEAGQ-DPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE  369 (420)
T ss_pred             eeEEEecCCcEEEeeccceEecCC-CchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH
Confidence            999999999999999864211110 00101111    110 134458999999999999988999999999988776665


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      . .|...|.+++|+++|+++++++ |..++++.
T Consensus       370 ~-~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  370 D-IHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             H-hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            4 4799999999999999999986 56777765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=9.7e-24  Score=207.12  Aligned_cols=347  Identities=15%  Similarity=0.191  Sum_probs=252.6

Q ss_pred             cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCC--------cEEEEeccCcCCCcceeeeecCCCCCCCCeE
Q 006126          245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLE--------KSVNLKLQLINEPSECRTLLLPDNSFGGRVV  315 (660)
Q Consensus       245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~  315 (660)
                      -+.|-||.. +.++           ..+||.-.+++|...|        .++|||..+   -..+..  + + .....|.
T Consensus        97 Qr~y~GH~ddikc~-----------~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~---L~TL~V--~-g-~f~~GV~  158 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCM-----------AVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT---LSTLHV--I-G-FFDRGVT  158 (626)
T ss_pred             cccccCCCCceEEE-----------eecCCceeeccCcccccCCCcCCCeeeeccccc---ceeeee--e-c-cccccce
Confidence            345666665 4444           7889888888876665        389999653   122222  1 2 2467899


Q ss_pred             EEEEec--CCCEEEEEEC--CCcEEEEeccCCceeee-e--------------------eccceeEEEecCCCCceeeec
Q 006126          316 RLIYSH--SGDFLVALTQ--TATHKLWKWQSNKQSLE-E--------------------ENVNMESQLYQPSSKLVMTND  370 (660)
Q Consensus       316 ~~~~sp--dg~~l~s~s~--dg~i~vw~~~~~~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~  370 (660)
                      |++||+  .|.+|+....  +..+.|||++.+..... .                    ......+..|+..++.+.+..
T Consensus       159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~  238 (626)
T KOG2106|consen  159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ  238 (626)
T ss_pred             eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe
Confidence            999998  3556655543  56789999987654322 0                    111123467888777654422


Q ss_pred             --ccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCC
Q 006126          371 --IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK  446 (660)
Q Consensus       371 --~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~  446 (660)
                        +....+..|.|++|. +.-+++|. +|.|.||+..+.+..+....|++.|.+++.-.+|.|++|+.|+.|..||-.-.
T Consensus       239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~  318 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYR  318 (626)
T ss_pred             eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccc
Confidence              222234679999999 77888888 99999999988888777779999999999999997777999999999983210


Q ss_pred             c----------------------------------------eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126          447 K----------------------------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  486 (660)
Q Consensus       447 ~----------------------------------------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~  486 (660)
                      +                                        ......+|....+.++.+|+...+++++.|+.+++|+  
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--  396 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--  396 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence            0                                        0012246777888999999999999999999999999  


Q ss_pred             CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126          487 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI  565 (660)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  565 (660)
                      ..+..-.+.+     +     .++.++.|+|.| .+++| ..|...+.|.++...+..-..   ..+++.++|+|+|.+|
T Consensus       397 ~~k~~wt~~~-----~-----d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  397 DHKLEWTKII-----E-----DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD---NEQLSVVRYSPDGAFL  462 (626)
T ss_pred             CCceeEEEEe-----c-----CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec---CCceEEEEEcCCCCEE
Confidence            2112111111     1     578899999999 77775 889999999988665544332   8899999999999999


Q ss_pred             EEEecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          566 YVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       566 ~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      |.|+.|+.|+||-+..+.. ......       ++..  .++.+.|++ |++++.+-+-|-.|..|+....
T Consensus       463 Avgs~d~~iyiy~Vs~~g~~y~r~~k-------~~gs--~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~  523 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSANGRKYSRVGK-------CSGS--PITHLDWSS-DSQFLVSNSGDYEILYWKPSEC  523 (626)
T ss_pred             EEecCCCeEEEEEECCCCcEEEEeee-------ecCc--eeEEeeecC-CCceEEeccCceEEEEEccccC
Confidence            9999999999999876443 333321       1133  355999999 8999999999999999966544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=207.36  Aligned_cols=290  Identities=16%  Similarity=0.196  Sum_probs=221.3

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc------CCceeee
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ------SNKQSLE  348 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~------~~~~~~~  348 (660)
                      ..+.+++.|.+.+||.++    .+.|... +  .||.+.|.+++|++.+..+++++.|++..||...      .+.....
T Consensus       161 pi~gtASADhTA~iWs~E----sg~CL~~-Y--~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~  233 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLE----SGACLAT-Y--TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD  233 (481)
T ss_pred             cceeecccccceeEEeec----cccceee-e--cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence            477899999999999998    4666632 3  5699999999999999999999999999999832      1110000


Q ss_pred             ------eeccceeEEEec---CCCCceee--ecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126          349 ------EENVNMESQLYQ---PSSKLVMT--NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  414 (660)
Q Consensus       349 ------~~~~~~~~~~~~---~~~~~~~~--~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~  414 (660)
                            ....+....--|   ...+..++  .....+|...|.+..|-  |+.+++++ |.+..+||+++|+.+..+.+|
T Consensus       234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH  313 (481)
T KOG0300|consen  234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH  313 (481)
T ss_pred             CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence                  000000000001   00111111  11112799999999998  88999999 999999999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      ....+.++-+|.. ++++.+.|.+.++||++.. ..+..|.||...|+++.|..+ ..+++|+.|.+|++||+++-    
T Consensus       314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNM----  388 (481)
T KOG0300|consen  314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNM----  388 (481)
T ss_pred             chhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccc----
Confidence            9999999999999 9999999999999999843 456789999999999999875 46889999999999999983    


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec---CCCCCCCeEEEEEccCC--CEEE
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDG--KCIY  566 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~dg--~~l~  566 (660)
                      ..++.++...     ++++.++.+..+..|+.- .+..|++||+. |..+..+.   ...|...|+|++|..+.  .-|+
T Consensus       389 RsplATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf  462 (481)
T KOG0300|consen  389 RSPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF  462 (481)
T ss_pred             cCcceeeecC-----CccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccc
Confidence            2344434333     679999999988899885 66789999995 54444443   22478899999998443  4577


Q ss_pred             EEecCCeEEEEECCCC
Q 006126          567 VSCKSGHVKVFDTSTL  582 (660)
Q Consensus       567 sg~~dg~I~iwd~~~~  582 (660)
                      +++-|..+.-|++...
T Consensus       463 tcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  463 TCGFDRMVAGWKINTP  478 (481)
T ss_pred             cccccceeeeeEeccc
Confidence            8889999999998764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=228.41  Aligned_cols=283  Identities=18%  Similarity=0.218  Sum_probs=224.6

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCE
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH  388 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  388 (660)
                      .|+.+-+.++|.|+|++|++++.||.|++|+......                 ....+.     .+...|.+++-.+++
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti~-----~~g~~v~~ia~~s~~   68 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETID-----ISGELVSSIACYSNH   68 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchhh-----ccCceeEEEeecccc
Confidence            3899999999999999999999999999998654421                 111111     266778888877668


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp  466 (660)
                      |++|+ +++|.+|.+..++.-..+....-++++++++.+| +++.|+.|-.|++.++.+......+++|.++|.++.|+|
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP  148 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence            88888 9999999999888776666777889999999999 999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC-CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126          467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~  544 (660)
                      ++.+|++.+.||.|++||+.++......  ..+....... ...+..++|+|+|..+++ +.|+.|++|+.........+
T Consensus       149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl--~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L  226 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQDGILSKTL--TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL  226 (933)
T ss_pred             CCCEEEEEecCceEEEEEcccchhhhhc--ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence            9999999999999999999986543221  1111111100 145677999999666666 89999999999999998888


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                      ....+...+..++|+|+|+|||+++.||.|.|||+++-+. ..+           .  -.+.+++|.| +.+.+-.-..-
T Consensus       227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-----------~--~~Vc~~aw~p-~~n~it~~~~~  291 (933)
T KOG1274|consen  227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-----------K--RAVCCEAWKP-NANAITLITAL  291 (933)
T ss_pred             cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-----------c--ceeEEEecCC-CCCeeEEEeec
Confidence            8876666699999999999999999999999999998332 111           1  2255899999 66665444444


Q ss_pred             CeEEEE
Q 006126          625 GRVHVI  630 (660)
Q Consensus       625 g~v~iw  630 (660)
                      |+.-+|
T Consensus       292 g~~~~~  297 (933)
T KOG1274|consen  292 GTLGVS  297 (933)
T ss_pred             cccccC
Confidence            444444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.9e-25  Score=213.95  Aligned_cols=271  Identities=15%  Similarity=0.159  Sum_probs=216.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|||...+=......-.+.||+..+.   ...+.  +..  ....|.++.|-.||+.|++|+..|.|+|||.++..   
T Consensus        32 l~fsp~~P~d~aVt~S~rvqly~~~~~---~~~k~--~sr--Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~---  101 (487)
T KOG0310|consen   32 LCFSPKHPYDFAVTSSVRVQLYSSVTR---SVRKT--FSR--FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV---  101 (487)
T ss_pred             EecCCCCCCceEEecccEEEEEecchh---hhhhh--HHh--hccceeEEEeecCCeEEEccCCcCcEEEeccccHH---
Confidence            377776653333333456888887641   11111  111  47889999999999999999999999998844321   


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                                        .+..+.  +|+.+|..+.|+   +..+++|+ |+.+++||+.+......+.+|...|.|.+|
T Consensus       102 ------------------iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~  161 (487)
T KOG0310|consen  102 ------------------ILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI  161 (487)
T ss_pred             ------------------HHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence                              111111  799999999999   66788888 789999999999886688999999999999


Q ss_pred             cCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126          424 LPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       424 sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      +|..  .+++|+.||.|++||+++. ..+..+. |..+|..+.+-|.|..+++++ ...+++||+.+|..    .+. ..
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q----ll~-~~  234 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ----LLT-SM  234 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce----ehh-hh
Confidence            9976  8999999999999999987 5556665 999999999999999999877 56899999997642    222 23


Q ss_pred             eccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          501 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      ..|.   ..|+|+++..++..|++ |-|+.|++||+.+.+.+..+..   .++|.+++.+|+++.++.|..||.+.+-+.
T Consensus       235 ~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  235 FNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             hccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence            3355   58999999999999999 6999999999988998888854   899999999999999999999998877654


Q ss_pred             CC
Q 006126          580 ST  581 (660)
Q Consensus       580 ~~  581 (660)
                      ..
T Consensus       309 ~~  310 (487)
T KOG0310|consen  309 EV  310 (487)
T ss_pred             hc
Confidence            43

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.5e-24  Score=201.39  Aligned_cols=291  Identities=14%  Similarity=0.111  Sum_probs=210.1

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      ||.+.|++++|+.||++|++++.|++|++|+++.-..                +...+++.....+|   .+.+.|.   
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------~eHr~~R~nve~dh---pT~V~FapDc  144 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------KEHRCIRQNVEYDH---PTRVVFAPDC  144 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------hhhhHhhccccCCC---ceEEEECCCc
Confidence            4999999999999999999999999999999865321                11122222221133   5667888   


Q ss_pred             CCEEEEEe-CCcEEEEECCC---CeEEEE--------E-cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE
Q 006126          386 GSHLFSAS-GGKISIFSLET---FQTLAT--------F-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK  451 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~---~~~~~~--------~-~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~  451 (660)
                      ...++++. ..++++|.+..   |.....        | +.|...+..+-...++ +|++++.|..|.+|+++ |+.+..
T Consensus       145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~  223 (420)
T KOG2096|consen  145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS  223 (420)
T ss_pred             ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence            33455555 67899997743   221111        1 1345566667777777 99999999999999998 999998


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE  527 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d  527 (660)
                      +......-+..+.+|+|+++++++.--.|++|.+--   |+......+. -+.||.   +.|..++|+|+.+.+++ +.|
T Consensus       224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~---saV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQ---SAVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccch---hheeeeeeCCCcceeEEEecC
Confidence            887777778889999999999999999999998632   2221111222 356888   79999999999999999 899


Q ss_pred             CcEEEEeCCC----C---ceeeeecC--CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCC
Q 006126          528 GQIDVYEAPT----L---NHTSQLVP--DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT  598 (660)
Q Consensus       528 ~~i~iwd~~~----~---~~~~~~~~--~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh  598 (660)
                      |++++||+.-    +   +.+++...  .........+.++|+|+.|+.+. ...+++|..++|+....+...      |
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~------h  372 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI------H  372 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh------h
Confidence            9999999752    1   22222211  11133444899999999988764 457999999999877766531      2


Q ss_pred             cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          599 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       599 ~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                       ...+.  +++|+| +|++++|+| |..+++..-..|
T Consensus       373 -~~~Is--~is~~~-~g~~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  373 -STTIS--SISYSS-DGKYIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             -cCcee--eEEecC-CCcEEeeec-ceeeeeecCCCc
Confidence             34444  999999 899999997 678888874443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=4.2e-24  Score=217.30  Aligned_cols=365  Identities=18%  Similarity=0.199  Sum_probs=258.5

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCc---------------------cee
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---------------------ECR  301 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~  301 (660)
                      .+..+.||.+ +.++-|.        .+..+.-++|+++.|..||||.+.-.....                     .+.
T Consensus       183 ~v~el~GH~DWIrsl~f~--------~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~  254 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFA--------RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ  254 (764)
T ss_pred             EEEEeeccchhhhhhhhh--------ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence            4445678888 6665232        122244589999999999999886322111                     000


Q ss_pred             -eeecCC--CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee---------eecccee--------------
Q 006126          302 -TLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---------EENVNME--------------  355 (660)
Q Consensus       302 -~~~l~~--~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~---------~~~~~~~--------------  355 (660)
                       .+.++.  .||.+.|.++.|+|.+..|+++|.|.++.+|......-.-.         ..+..+.              
T Consensus       255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~  334 (764)
T KOG1063|consen  255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH  334 (764)
T ss_pred             EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence             011111  47999999999999999999999999999999776532110         1122222              


Q ss_pred             -----EEEecCCC-CceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEE
Q 006126          356 -----SQLYQPSS-KLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFI  422 (660)
Q Consensus       356 -----~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~  422 (660)
                           .++|..+. ..........||.+.|..++|.  |++|++++ |.+-++|-.-..    ..+..-+-|....+|++
T Consensus       335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~  414 (764)
T KOG1063|consen  335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS  414 (764)
T ss_pred             cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence                 24555222 2222223344899999999999  99999999 999999865411    12223346888899999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCC-------------------------------------------Cc-----------
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCT-------------------------------------------KK-----------  447 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~-------------------------------------------~~-----------  447 (660)
                      +-+.. .|++|.+.+.+++|+...                                           |.           
T Consensus       415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~  494 (764)
T KOG1063|consen  415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA  494 (764)
T ss_pred             hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence            99867 999999999999997540                                           00           


Q ss_pred             ----------------------eeeEeeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeee
Q 006126          448 ----------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       448 ----------------------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                                            .++++.||...|++++.+|+|+++++++..     ..|++|+..++..     .+ ..
T Consensus       495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~-~L  568 (764)
T KOG1063|consen  495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQ-EL  568 (764)
T ss_pred             cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hh-ee
Confidence                                  012456888999999999999999998864     3599999988543     22 45


Q ss_pred             eccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee-eeec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          501 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT-SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~-~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                      .+|.   -.|+.++|||||++|++ +.|+++.+|........ ..+. ...|..-|.++.|+|++.+++|++.|.+|++|
T Consensus       569 ~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  569 EGHS---LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             cccc---eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence            6777   68999999999999999 89999999997543211 1110 23578999999999999999999999999999


Q ss_pred             ECCCC--eeEEEeecccccCCCCcCcccceEEEEEecCCCC----EEEEEeCCCeEEEEeCC
Q 006126          578 DTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN----RIALGLTNGRVHVIEPL  633 (660)
Q Consensus       578 d~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~----~l~s~s~Dg~v~iw~~~  633 (660)
                      .....  +.+..+...     .+ +..  +++++|.|.+.+    .++.|-..|.|.+|...
T Consensus       646 ~~~~~~d~~i~~~a~~-----~~-~~a--VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  646 EEPDLRDKYISRFACL-----KF-SLA--VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             eccCchhhhhhhhchh-----cc-CCc--eeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            99887  433332211     11 233  448888876544    67888899999999965

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=5.9e-23  Score=213.09  Aligned_cols=339  Identities=14%  Similarity=0.104  Sum_probs=254.2

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC--CEEEEEECCCcEEEEeccCCcee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg--~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      ...|-|.+++++..++.+.||+...+.++.... .++-...+. .|.++ ++|..  +.++.|+.+|.+.+|++.+++..
T Consensus       119 ~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~-~~~~~~~~~-~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v  195 (910)
T KOG1539|consen  119 LLLPFGEHLIAVDISNILFVWKTSSIQEELYLQ-STFLKVEGD-FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVV  195 (910)
T ss_pred             EEeeecceEEEEEccCcEEEEEecccccccccc-ceeeeccCC-ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEE
Confidence            445778999999999999999998642221111 222211123 26666 45543  67899999999999998887752


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                                  +.         ..  ++...|+++.-+  =+.++.|. +|+|.+++++.++.+.+|+...+.|++++|
T Consensus       196 ------------~~---------f~--~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF  252 (910)
T KOG1539|consen  196 ------------YT---------FQ--EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF  252 (910)
T ss_pred             ------------EE---------ec--ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence                        11         11  577888888888  67788888 999999999999999999877899999999


Q ss_pred             cCCC--eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee---------
Q 006126          424 LPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------  491 (660)
Q Consensus       424 sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~---------  491 (660)
                      ..||  .+++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=.+++...         
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G  332 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG  332 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence            9999  89999999999999999887776665 58788888888888888888888887777644322110         


Q ss_pred             --------e--------------------------------ce--------eee----------e---------------
Q 006126          492 --------C--------------------------------SK--------FLH----------S---------------  498 (660)
Q Consensus       492 --------~--------------------------------~~--------~~~----------~---------------  498 (660)
                              .                                ..        ...          .               
T Consensus       333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~  412 (910)
T KOG1539|consen  333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD  412 (910)
T ss_pred             CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence                    0                                00        000          0               


Q ss_pred             -eeeccC--------------------------CCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec-CCCC
Q 006126          499 -FQTGLV--------------------------PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV-PDKM  549 (660)
Q Consensus       499 -~~~~~~--------------------------~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~-~~~~  549 (660)
                       +...|.                          +....+++++.++.|++.+.| ..|.|-+|++.+|-...++. ...|
T Consensus       413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah  492 (910)
T KOG1539|consen  413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH  492 (910)
T ss_pred             ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence             000000                          001467889999999999986 88999999999998888873 2357


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc----------------------------------cC
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY----------------------------------AQ  595 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~----------------------------------~~  595 (660)
                      ..+|++++.+.-++.+++++.+|.+++||.....++..+.....                                  ..
T Consensus       493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f  572 (910)
T KOG1539|consen  493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF  572 (910)
T ss_pred             cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence            99999999999999999999999999999988775544432110                                  13


Q ss_pred             CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          596 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       596 ~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      .|| ++.++  +++||| ||++|++++.|++||+||+.++..
T Consensus       573 ~gh-~nrit--d~~FS~-DgrWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  573 WGH-GNRIT--DMTFSP-DGRWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             hcc-cccee--eeEeCC-CCcEEEEeecCCcEEEEeccCcce
Confidence            455 44555  999999 899999999999999999999875

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=9.4e-24  Score=195.08  Aligned_cols=265  Identities=13%  Similarity=0.099  Sum_probs=200.6

Q ss_pred             eEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          268 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       268 ~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +.||| ...+++.++.||+||+|+++.   .+.......  ..|.++|.+++|+.||..+++|+.|+.+++||+.+++. 
T Consensus        33 l~FSP~~~~~~~A~SWD~tVR~wevq~---~g~~~~ka~--~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-  106 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSWDGTVRIWEVQN---SGQLVPKAQ--QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-  106 (347)
T ss_pred             eEeccccCceEEecccCCceEEEEEec---CCcccchhh--hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-
Confidence            59999 455667999999999999986   223222112  22899999999999999999999999999999887753 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C--CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  421 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~--~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v  421 (660)
                                          .+.-   .|.++|.++.|-  .  ..|++|+ |++|+.||.+...++.++.-+ ..++++
T Consensus       107 --------------------~~v~---~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~  162 (347)
T KOG0647|consen  107 --------------------SQVA---AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAA  162 (347)
T ss_pred             --------------------eeee---ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeeh
Confidence                                1111   599999999998  2  3689999 999999999998888877643 445554


Q ss_pred             EEcCCCeEEEEeCCCeEEEEeCCCCceeeEe--eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          422 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       422 ~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      ..-.. .++++..++.|.+|+++.+......  ..-+-.++|++..+|....+.|+.+|.+.+..+..+.....+.+   
T Consensus       163 Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF---  238 (347)
T KOG0647|consen  163 DVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF---  238 (347)
T ss_pred             hccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE---
Confidence            43222 7888999999999999876433211  11345688999999888889999999999999988533222222   


Q ss_pred             eeccCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126          500 QTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       500 ~~~~~~------~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                       ..|..      ....|++++|+|.-..|++ |.||++.+||-.....+.+...  |..+|++.+|+.+|.+++.+.
T Consensus       239 -kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~--~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  239 -KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET--HPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             -EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc--CCCccceeEecCCCCEEEEEe
Confidence             22220      0136788999998888888 8999999999877776666644  699999999999999887553

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=6.3e-24  Score=196.20  Aligned_cols=270  Identities=12%  Similarity=0.106  Sum_probs=206.1

Q ss_pred             CCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      -.+.|.+++||| ...+++++|-||+|++|+++....                ..++...     .|.++|.+++|+  |
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----------------~~~ka~~-----~~~~PvL~v~Wsddg   84 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----------------LVPKAQQ-----SHDGPVLDVCWSDDG   84 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCc----------------ccchhhh-----ccCCCeEEEEEccCC
Confidence            478899999999 455666888899999999876422                0011111     599999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL  462 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l  462 (660)
                      ..+++|+ |+.+++||+.++ .+..+..|..+|.++.|-+..   .|++|+.|++|+.||++...++.++. -..+++++
T Consensus        85 skVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   85 SKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             ceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            8888888 999999999999 556677899999999998766   89999999999999999988888776 45667776


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce-
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH-  540 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~-  540 (660)
                      ..-  ...++++..++.|.+|+++.+....... .   ..-.   -.+++++..+|....+. +-+|.+.+..+..+.+ 
T Consensus       163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~~-~---SpLk---~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~  233 (347)
T KOG0647|consen  163 DVL--YPMAVVATAERHIAVYNLENPPTEFKRI-E---SPLK---WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK  233 (347)
T ss_pred             hcc--CceeEEEecCCcEEEEEcCCCcchhhhh-c---Cccc---ceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence            553  4578889999999999998754321111 1   1111   46889999988877777 5899999988877632 


Q ss_pred             -eeeecCCCC-------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126          541 -TSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       541 -~~~~~~~~~-------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp  612 (660)
                       -.+++.+..       -..|.+++|+|.-..|++.+.||++.+||-.....+.....+        ..++.  +.+|+.
T Consensus       234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--------~qpIt--cc~fn~  303 (347)
T KOG0647|consen  234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--------PQPIT--CCSFNR  303 (347)
T ss_pred             CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--------CCccc--eeEecC
Confidence             233333211       235778999999999999999999999998877666655432        55555  999999


Q ss_pred             CCCCEEEEEe
Q 006126          613 LEPNRIALGL  622 (660)
Q Consensus       613 ~d~~~l~s~s  622 (660)
                       +|.++|-+.
T Consensus       304 -~G~ifaYA~  312 (347)
T KOG0647|consen  304 -NGSIFAYAL  312 (347)
T ss_pred             -CCCEEEEEe
Confidence             899988653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.8e-25  Score=223.32  Aligned_cols=278  Identities=17%  Similarity=0.205  Sum_probs=220.8

Q ss_pred             EEEEe-cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE
Q 006126          316 RLIYS-HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA  392 (660)
Q Consensus       316 ~~~~s-pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~  392 (660)
                      .+..+ |.++||++||.||.|++|++........               ......  .+.|.+.|..+...  ++.|+++
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s---------------~~~~as--me~HsDWVNDiiL~~~~~tlIS~   91 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS---------------TPYIAS--MEHHSDWVNDIILCGNGKTLISA   91 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcc---------------cchhhh--hhhhHhHHhhHHhhcCCCceEEe
Confidence            34444 5678899999999999999865533111               001111  12699999999988  7789999


Q ss_pred             e-CCcEEEEECCCC--eEEEEEcCCCCCeEEEEE-cCCC-eEEEEeCCCeEEEEeCCCCc--eee--------Eee-ccC
Q 006126          393 S-GGKISIFSLETF--QTLATFANPPPIATYFIL-LPQD-LFAFGFDDSSILVHCPCTKK--TKA--------KLK-GHQ  456 (660)
Q Consensus       393 ~-dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~-sp~~-~l~s~~~d~~I~iwd~~~~~--~~~--------~~~-~~~  456 (660)
                      + |-+|++|+...+  -+..++..|..-|.|+++ -++. .+|+||-|+.|.+||++++.  .+.        .+. |+.
T Consensus        92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            9 999999999887  678888999999999999 6777 99999999999999999872  222        223 788


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA  535 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~  535 (660)
                      ..|++++.++.|..+++|+..+.+++||.++.+    +.++  ..||.   ..|..+..++||+.+++ ++||+|++||+
T Consensus       172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----kimk--LrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----KIMK--LRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             cceeeeecCCcceEEEecCcccceEEecccccc----ceee--eeccc---cceEEEEEcCCCCeEeecCCCceEEeeec
Confidence            899999999999999999999999999999954    2233  45998   68999999999999999 69999999999


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe-eEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      ...+++.++..  |...|+++..+|+-..+++|+.||.|+.=|+++.. .....+.         ++++.  .+..+..+
T Consensus       243 gqQrCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---------daPv~--~l~~~~~~  309 (735)
T KOG0308|consen  243 GQQRCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---------DAPVL--KLHLHEHD  309 (735)
T ss_pred             cccceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---------CCchh--hhhhcccc
Confidence            99999999876  67779999999999999999999999999998843 2222221         44555  55555423


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q 006126          615 PNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~  633 (660)
                       +-+-+++.|+.|+=|...
T Consensus       310 -~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  310 -NSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             -CCceeeeccccceecCCc
Confidence             333556689999999865

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=9.7e-25  Score=213.68  Aligned_cols=279  Identities=15%  Similarity=0.168  Sum_probs=222.9

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |..-|.++++|...+++.||+. |.|+|||+......                  ..+..+-.-.....+.++...  |+
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------~PvsqLdcl~rdnyiRSckL~pdgr  478 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------SPVSQLDCLNRDNYIRSCKLLPDGR  478 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------CccccccccCcccceeeeEecCCCc
Confidence            8888999999999999888875 88999998755321                  111100000245667777777  88


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          388 HLFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      .|++|+ -.++.|||+......-  .+......+.+++.+||. ..+++..||.|.|||+.+...++.|.||...+.||.
T Consensus       479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  558 (705)
T ss_pred             eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence            899999 7899999998655433  333444566789999999 888999999999999999999999999999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~  542 (660)
                      +++||..|.+|+-|.+||.||++++.......+.          +.|.++..+|++.++++| .++.+.|......+ ..
T Consensus       559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~cP~~dWlavGMens~vevlh~skp~-ky  627 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KY  627 (705)
T ss_pred             ecCCCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheecccCCCccceeeecccCcEEEEecCCcc-ce
Confidence            9999999999999999999999997644333333          689999999999999998 77888888874332 22


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .  .+.|...|.++.|.+.|+|+++.+.|+.+..|...-|..+...+-         ...  |+++..+- |.++++||+
T Consensus       628 q--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~Ss--VlsCDIS~-ddkyIVTGS  693 (705)
T KOG0639|consen  628 Q--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSS--VLSCDISF-DDKYIVTGS  693 (705)
T ss_pred             e--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCc--ceeeeecc-CceEEEecC
Confidence            2  345799999999999999999999999999999998876665442         333  45888888 789999999


Q ss_pred             CCCeEEEEeC
Q 006126          623 TNGRVHVIEP  632 (660)
Q Consensus       623 ~Dg~v~iw~~  632 (660)
                      .|..-.||.+
T Consensus       694 GdkkATVYeV  703 (705)
T KOG0639|consen  694 GDKKATVYEV  703 (705)
T ss_pred             CCcceEEEEE
Confidence            9998888876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.3e-23  Score=194.99  Aligned_cols=267  Identities=13%  Similarity=0.113  Sum_probs=208.2

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL  389 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l  389 (660)
                      .+.|..+.|+|.+..|++++-||++++|++.....                     ... +  .|..++.+++|. ...+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l---------------------~~~-~--~~~~plL~c~F~d~~~~   68 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL---------------------KLK-F--KHGAPLLDCAFADESTI   68 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh---------------------hhh-e--ecCCceeeeeccCCceE
Confidence            67899999999999999999999999998766533                     111 1  589999999999 7889


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      ++|+ ||.|+.+|+.++... .+..|..+|.|+..++-. .+++|+.|++|++||.+.......+.. ...|.++..  .
T Consensus        69 ~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~  144 (323)
T KOG1036|consen   69 VTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--S  144 (323)
T ss_pred             EEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--c
Confidence            9999 999999999987654 455799999999999877 999999999999999997555555553 347888766  5


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC----ceee
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL----NHTS  542 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~----~~~~  542 (660)
                      |+.|++|+.|..+.+||+++-..    +.+.....-.   -.+.++++-|++.-.++ +-||.|.+=.+...    +...
T Consensus       145 g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  145 GNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             CCEEEEeecCceEEEEEcccccc----hhhhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence            78999999999999999998432    2221111111   57889999998776666 69999888666544    2222


Q ss_pred             eecCCC-------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126          543 QLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP  615 (660)
Q Consensus       543 ~~~~~~-------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~  615 (660)
                      .|..+.       --.+|.+++|+|-...+|||+.||.|.+||+.+.+.+..+..          .+..+..++|+. ||
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----------~~~SI~slsfs~-dG  286 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----------YETSISSLSFSM-DG  286 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----------CCCceEEEEecc-CC
Confidence            232211       135799999999999999999999999999999888877752          123355899999 89


Q ss_pred             CEEEEEeC
Q 006126          616 NRIALGLT  623 (660)
Q Consensus       616 ~~l~s~s~  623 (660)
                      ..||+++.
T Consensus       287 ~~LAia~s  294 (323)
T KOG1036|consen  287 SLLAIASS  294 (323)
T ss_pred             CeEEEEec
Confidence            99999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-22  Score=205.28  Aligned_cols=364  Identities=14%  Similarity=0.157  Sum_probs=262.1

Q ss_pred             CCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126          263 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       263 ~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~  342 (660)
                      .....++||.+.+.||.+-.||.|-||++.    ..-+....+.+ +-...|.+++|++.|+ |.+.+.+|.|.-||+.+
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~----~~w~~~~vi~g-~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLS----NNWFLEPVIHG-PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccC----CCceeeEEEec-CCCCceeeEEEccCCe-EEeecCCceEEEEeccc
Confidence            344456999999999999999999999998    46666655655 2467899999996554 89999999999999998


Q ss_pred             Cceeeee---------------------eccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 006126          343 NKQSLEE---------------------ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS  398 (660)
Q Consensus       343 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~  398 (660)
                      .+.....                     ...++....++...+.+.........++.|.+++|+  +..|++|+ ||.|+
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence            8765431                     112222233444444433322222456899999999  67799999 99999


Q ss_pred             EEECCCCeEEEEEc--------CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126          399 IFSLETFQTLATFA--------NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       399 iwd~~~~~~~~~~~--------~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  470 (660)
                      +||+.++..+....        ....-|+++.+-.++.|++|..-|+|.+||...|..++.+..|...|.+++..+++.+
T Consensus       180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~  259 (691)
T KOG2048|consen  180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR  259 (691)
T ss_pred             EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence            99999987766221        1333568888887889999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCeee----e-----ceeee--------------------------------------------
Q 006126          471 LVSSGADAQLCVWDAVGWKKL----C-----SKFLH--------------------------------------------  497 (660)
Q Consensus       471 l~s~s~dg~i~vwd~~~~~~~----~-----~~~~~--------------------------------------------  497 (660)
                      +++++.|+.|..|...+....    .     ...++                                            
T Consensus       260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~  339 (691)
T KOG2048|consen  260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVS  339 (691)
T ss_pred             EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceee
Confidence            999999999888766554210    0     00000                                            


Q ss_pred             -----------------------eeeeccC----------CCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC-------
Q 006126          498 -----------------------SFQTGLV----------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-------  537 (660)
Q Consensus       498 -----------------------~~~~~~~----------~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~-------  537 (660)
                                             ....|+.          +....|.+.+.+|+|++++.+.=...++|.+..       
T Consensus       340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~  419 (691)
T KOG2048|consen  340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVI  419 (691)
T ss_pred             cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEE
Confidence                                   0000000          012457888999999999987544455554432       


Q ss_pred             -------------------------------------------CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          538 -------------------------------------------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       538 -------------------------------------------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                                                                 .+.+..+........|..+..||+|+|||+.+.+|.|
T Consensus       420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I  499 (691)
T KOG2048|consen  420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI  499 (691)
T ss_pred             EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence                                                       0000011111124678899999999999999999999


Q ss_pred             EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce-eccCC
Q 006126          575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV-EWGKL  642 (660)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~-~w~~~  642 (660)
                      .+|++++++.......          -...++.++|+|.+.+.++.+..|+.|.=||+...+. +|+..
T Consensus       500 ~v~nl~~~~~~~l~~r----------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~  558 (691)
T KOG2048|consen  500 FVYNLETLESHLLKVR----------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKN  558 (691)
T ss_pred             EEEEcccceeecchhc----------cCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhc
Confidence            9999999876655431          1245669999987888999999999999999965543 56543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=1.6e-24  Score=212.08  Aligned_cols=275  Identities=12%  Similarity=0.088  Sum_probs=221.3

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      ++.+|...+++++|+. |-|+|||+........+.+  |+...-.+.|.++..+|||+.|++|+.-.++.|||+......
T Consensus       424 AvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr  500 (705)
T KOG0639|consen  424 AVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR  500 (705)
T ss_pred             EEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence            3677888888888876 6799999986433333333  222224788999999999999999999999999998766541


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                      ..                   . .+ ....-.+++++.+  .+..+++. ||.|.|||+.+...++.|++|...+.||.+
T Consensus       501 ik-------------------a-el-tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  501 IK-------------------A-EL-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             hh-------------------h-hc-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence            11                   0 00 0122346667777  44545555 999999999999999999999999999999


Q ss_pred             cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      ++|| .|.+|+-|.+|+.||+++++.+.... ..+.|.++.++|++.+++.|-.++.+.+......+.   ..    ..-
T Consensus       560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k---yq----lhl  631 (705)
T KOG0639|consen  560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK---YQ----LHL  631 (705)
T ss_pred             cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc---ee----ecc
Confidence            9999 99999999999999999987766544 567899999999999999999999998888766332   11    234


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      |.   +.|.++.|.+.|+++++ |.|+-+..|...-|..+.....   ..+|.++.+|.|.++|++|+.|..-.||.+
T Consensus       632 he---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  632 HE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cc---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            55   78999999999999999 8999999999988888776643   889999999999999999999988888865

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.1e-23  Score=191.29  Aligned_cols=235  Identities=16%  Similarity=0.212  Sum_probs=189.1

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G  386 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~  386 (660)
                      +.|.+.|+++|.+  |.|+|+||.|-+|+|||+.....                 .|.++      .|.+.|+++.|. .
T Consensus        40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------lg~ll------~HagsitaL~F~~~   94 (362)
T KOG0294|consen   40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------LGILL------SHAGSITALKFYPP   94 (362)
T ss_pred             cccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------hccee------ccccceEEEEecCC
Confidence            4499999999985  88999999999999999876653                 12222      599999999999 2


Q ss_pred             ---CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          387 ---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       387 ---~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                         ..|++|+ ||.|.+|+.....++.++++|...|+.++++|.| +-++.+.|+.++.||+-.|+.-..+.- ....+.
T Consensus        95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~  173 (362)
T KOG0294|consen   95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATL  173 (362)
T ss_pred             cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCccee
Confidence               3788998 9999999999999999999999999999999999 888999999999999998876655542 223445


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH  540 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~  540 (660)
                      +.|+|.|.+++.++. ..|-+|.+.+...     +..+...     ..+.++.|.. +..+++ +.|+.|.+||..+..+
T Consensus       174 v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v-----~~~i~~~-----~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  174 VSWSPQGDHFVVSGR-NKIDIYQLDNASV-----FREIENP-----KRILCATFLD-GSELLVGGDNEWISLKDTDSDTP  241 (362)
T ss_pred             eEEcCCCCEEEEEec-cEEEEEecccHhH-----hhhhhcc-----ccceeeeecC-CceEEEecCCceEEEeccCCCcc
Confidence            899999998888775 4677898887332     2111111     3466777765 445555 6889999999998888


Q ss_pred             eeeecCCCCCCCeEEEEE--ccCCCEEEEEecCCeEEEEECCCC
Q 006126          541 TSQLVPDKMDLPITYATY--SCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~--s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      ...+..  |...|-++.+  .|++.+|++++.||.|+|||++..
T Consensus       242 ~~~~~A--H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  242 LTEFLA--HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceeeec--chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            877765  7899999885  378899999999999999999876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=4.6e-22  Score=202.34  Aligned_cols=277  Identities=15%  Similarity=0.129  Sum_probs=197.8

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEE-EEEECCCcEEEEeccCCceeeeeeccc
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      ..+++++.|+.+++||..+    +..... +.   +...+.+++|+|+|+.+ ++++.++.+.+||..+++.        
T Consensus         2 ~~~~s~~~d~~v~~~d~~t----~~~~~~-~~---~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--------   65 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT----LEVTRT-FP---VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--------   65 (300)
T ss_pred             cEEEEecCCCEEEEEECCC----CceEEE-EE---CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--------
Confidence            5678999999999999974    333221 22   23446789999999977 4566789999998766543        


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L  428 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~  428 (660)
                                   .....  .+ ..+..++|+  ++.++++ . ++.|++||+.+++.+..+..+ ..+.+++|+|+| .
T Consensus        66 -------------~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~  128 (300)
T TIGR03866        66 -------------IGTLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKI  128 (300)
T ss_pred             -------------EEecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCE
Confidence                         11110  12 224567787  6666554 4 799999999998887777532 345789999999 8


Q ss_pred             EEEEeCCC-eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126          429 FAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       429 l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                      +++++.++ .+.+||..+++...... ....+.++.|+|+|++++++ ..++.|++||+++++........ ....+.. 
T Consensus       129 l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~-  205 (300)
T TIGR03866       129 VVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHPE-  205 (300)
T ss_pred             EEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-ccccccc-
Confidence            88877765 57788998887765543 23356788999999988655 46899999999987543322211 0010100 


Q ss_pred             CCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCe
Q 006126          507 TTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLE  583 (660)
Q Consensus       507 ~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~  583 (660)
                      ......++|+|+++++++  +.++.+.+||+++++.+..+..   ...+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus       206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            013456889999998665  3567899999998887765532   4578899999999999886 458999999999999


Q ss_pred             eEEEeec
Q 006126          584 LRCQINL  590 (660)
Q Consensus       584 ~~~~~~~  590 (660)
                      .+..+..
T Consensus       283 ~~~~~~~  289 (300)
T TIGR03866       283 VIKSIKV  289 (300)
T ss_pred             EEEEEEc
Confidence            9888863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1.5e-23  Score=213.45  Aligned_cols=263  Identities=15%  Similarity=0.183  Sum_probs=209.4

Q ss_pred             cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEE-EEEec-CCCEEEEEECCCcEEEEeccCCceeee
Q 006126          271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR-LIYSH-SGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~-~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .-++..+++++.||++++|+-.+   ..-.....+.  +|.+-|.+ ++|-+ ++-.+++|+.|+.|.+|...+...   
T Consensus        22 ~~~~~~i~s~sRd~t~~vw~~~~---~~~l~~~~~~--~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P---   93 (745)
T KOG0301|consen   22 VTDGVCIISGSRDGTVKVWAKKG---KQYLETHAFE--GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP---   93 (745)
T ss_pred             ecCCeEEeecCCCCceeeeeccC---cccccceecc--cCcceeeccceeccccCcceEeecccceEEEEecCCCCc---
Confidence            34555899999999999999864   1222222232  36777776 77775 444599999999999987655432   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ  426 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~  426 (660)
                                        +..+.  +|+..|.|+... ...+++|+ |.++++|-..  ++...+++|...|++++.-|.
T Consensus        94 ------------------~~~Lk--gH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e  151 (745)
T KOG0301|consen   94 ------------------LYTLK--GHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPE  151 (745)
T ss_pred             ------------------hhhhh--ccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecCC
Confidence                              22222  899999999977 55599999 9999999864  566668999999999999999


Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126          427 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       427 ~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                      +.+++|+.|++|++|.-  ++.+++|.+|...|+.+++-+++ .+++++.||.|+.|++..      ..+. ...||+  
T Consensus       152 ~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~-~~~ght--  219 (745)
T KOG0301|consen  152 NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLL-EMHGHT--  219 (745)
T ss_pred             CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceee-eeeccc--
Confidence            99999999999999974  78999999999999999999865 578899999999999954      3333 456888  


Q ss_pred             CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          507 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       507 ~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                       +.+.++...+++..+++ |.|+++++|+..  .+.+.+..+  ...|+++++-++|+ |++|+.||.||||....
T Consensus       220 -n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  220 -NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             -eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence             79999997777777777 799999999975  777777542  56899999888887 56778899999998763

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.6e-23  Score=192.50  Aligned_cols=300  Identities=16%  Similarity=0.172  Sum_probs=220.7

Q ss_pred             CCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          310 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       310 h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      |.+.|..+...+ .|+|+++|+.||.|.|||++........   .   .+-+  ....+......+|.-.|..+.|.   
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s---~---li~k--~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS---G---LIAK--HKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc---c---ceeh--eeeeccccCCccceeeeeeeEEeeec
Confidence            899999999988 6899999999999999999865421100   0   0000  00011111222788999999998   


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC----eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT  460 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~----~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~  460 (660)
                      ...+.+++ |.++++||..+.+....|+ .++.|.+-+++|-.    ++++|..|-.|++.|+.+|..-+.+.||.+.|.
T Consensus       114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL  192 (397)
T ss_pred             CceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence            56777888 9999999999988877775 34567788888854    788899999999999999999999999999999


Q ss_pred             EEEEeCCCCE-EEEEeCCCcEEEEEcCCCe-eee--------ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc
Q 006126          461 CLAYSLSLNV-LVSSGADAQLCVWDAVGWK-KLC--------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ  529 (660)
Q Consensus       461 ~l~~sp~~~~-l~s~s~dg~i~vwd~~~~~-~~~--------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~  529 (660)
                      ++.|+|...+ |++|+.||.|++||++... +..        ..++......|.   +.+..++|+.++.++++ +.|..
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhccCccc
Confidence            9999997765 7889999999999998641 100        011111123444   78999999999999999 79999


Q ss_pred             EEEEeCCCCceeee-ecCCCCC---CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126          530 IDVYEAPTLNHTSQ-LVPDKMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP  605 (660)
Q Consensus       530 i~iwd~~~~~~~~~-~~~~~~~---~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~  605 (660)
                      +++|+..+|+.... +....|+   ..-..+. +-+...++.--.++.+.++++-.|+.+..+..       | ...  +
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-------h-~k~--i  338 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-------H-LKR--I  338 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec-------c-cce--e
Confidence            99999988764221 1111111   1111122 33444555555568999999999999988873       3 333  4


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          606 LVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .|.++-| +-+...++..|+.|..|-+.
T Consensus       339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  339 NCAAYRP-DFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEeecC-chhhhhccccCCcccccccc
Confidence            4889989 78889999999999999983

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=4.4e-24  Score=208.05  Aligned_cols=251  Identities=14%  Similarity=0.238  Sum_probs=196.1

Q ss_pred             CCCCeEEEEEecCCCE-EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          310 FGGRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~-l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      |.+.|+.+.+.|.... +|+.+..+.+.|||.........             ..+.+...+...||...-++++|+   
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-------------~~~~~~Pdl~L~gH~~eg~glsWn~~~  189 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-------------ASGECRPDLRLKGHEKEGYGLSWNRQQ  189 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-------------ccccCCCceEEEeeccccccccccccc
Confidence            8999999999997754 55566689999999876543111             111111111112788888889999   


Q ss_pred             CCEEEEEe-CCcEEEEECCCCe-------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC--CCceeeEee
Q 006126          386 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAKLK  453 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~-------~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~--~~~~~~~~~  453 (660)
                      ...|++++ |++|++||+....       ....+.+|...|..++|++-.  .|++++.|+.+.|||++  +.++.+...
T Consensus       190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~  269 (422)
T KOG0264|consen  190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK  269 (422)
T ss_pred             ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence            56788888 8999999997532       345677999999999999987  99999999999999999  556677788


Q ss_pred             ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcE
Q 006126          454 GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQI  530 (660)
Q Consensus       454 ~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i  530 (660)
                      +|.+.|+|++|+| ++..||+||.|++|.+||+|+-.    .++. .+.+|.   ..|..+.|+|....+++  |.|+.+
T Consensus       270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh-~~e~H~---dev~~V~WSPh~etvLASSg~D~rl  341 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLH-TFEGHE---DEVFQVEWSPHNETVLASSGTDRRL  341 (422)
T ss_pred             ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCce-eccCCC---cceEEEEeCCCCCceeEecccCCcE
Confidence            8999999999999 66778999999999999999843    4666 677888   69999999998766554  599999


Q ss_pred             EEEeCCCCceee------------eecCCCCCCCeEEEEEccCCCE-EEEEecCCeEEEEECCC
Q 006126          531 DVYEAPTLNHTS------------QLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKVFDTST  581 (660)
Q Consensus       531 ~iwd~~~~~~~~------------~~~~~~~~~~v~~~~~s~dg~~-l~sg~~dg~I~iwd~~~  581 (660)
                      .+||+..-...+            .|.-.+|...|..+.|+|+..+ |++.++|+.+.||++..
T Consensus       342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999986422221            1333458999999999998875 56788899999999863

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-22  Score=204.07  Aligned_cols=288  Identities=17%  Similarity=0.220  Sum_probs=227.9

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL  389 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l  389 (660)
                      ..+|.++||+.+.+.||.+-.||.|.+|++..+-.                     ....+.++....|.+++|+ +..|
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---------------------~~~vi~g~~drsIE~L~W~e~~RL   83 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---------------------LEPVIHGPEDRSIESLAWAEGGRL   83 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCce---------------------eeEEEecCCCCceeeEEEccCCeE
Confidence            77999999999999999999999999998765432                     2222333567789999999 8888


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee--EeeccCCCeEEEEEe
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYS  465 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s  465 (660)
                      ++.+ +|.|.-||+.+++....+....+.|++++.+|.+ .++.|+.||.++.++...++...  .+...+++|.+++|+
T Consensus        84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~  163 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN  163 (691)
T ss_pred             EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence            8888 9999999999999999999999999999999999 99999999988888887765543  334456899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeee--eeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~  542 (660)
                      |++..+++|+.||.|++||..++........+  ....+..   .-|.++.|-.++. |++| ..|+|.+||...+..++
T Consensus       164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~---~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiq  239 (691)
T KOG2048|consen  164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP---TIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQ  239 (691)
T ss_pred             CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCc---eEEEEEEEeecCc-EEEecCCceEEEEcccCcchhh
Confidence            99999999999999999999997654422221  1111111   4678888887664 4554 77999999999999999


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .+..  |...|.+++..++++++++++.|+.|.-|...+++.......    ..-++.+.+.  +++..+   ..+++||
T Consensus       240 S~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~----~r~~h~hdvr--s~av~~---~~l~sgG  308 (691)
T KOG2048|consen  240 SHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS----RRDLHAHDVR--SMAVIE---NALISGG  308 (691)
T ss_pred             hhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec----cccCCcccce--eeeeec---ceEEecc
Confidence            8875  699999999999999999999999999998887754322221    1122255566  777766   3888999


Q ss_pred             CCCeEEEEeCCC
Q 006126          623 TNGRVHVIEPLE  634 (660)
Q Consensus       623 ~Dg~v~iw~~~~  634 (660)
                      .|.++.+-....
T Consensus       309 ~d~~l~i~~s~~  320 (691)
T KOG2048|consen  309 RDFTLAICSSRE  320 (691)
T ss_pred             eeeEEEEccccc
Confidence            998888766544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.2e-24  Score=190.54  Aligned_cols=245  Identities=17%  Similarity=0.193  Sum_probs=195.6

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      .|.+-|..+...--|+.|||++.|++|+|+.+.++...                  .++..+  .||.++|+.++|.   
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s------------------~ll~~L--~Gh~GPVwqv~wahPk   68 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS------------------KLLAEL--TGHSGPVWKVAWAHPK   68 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc------------------eeeeEe--cCCCCCeeEEeecccc
Confidence            38999999988889999999999999999998766420                  122222  2899999999998   


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCC---ceeeEeecc
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---KTKAKLKGH  455 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~---~~~~~~~~~  455 (660)
                       |.+||+++ ||.|.||.-..|+-.  .....|...|++++|.|.+   .|++++.||.|.|.+.++.   ...+....|
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence             89999999 999999998887543  3455899999999999987   8999999999999987754   122344569


Q ss_pred             CCCeEEEEEeCC---C-----------CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--
Q 006126          456 QNRITCLAYSLS---L-----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--  519 (660)
Q Consensus       456 ~~~v~~l~~sp~---~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--  519 (660)
                      .-.|+++.|.|.   |           +.|++|+.|..|+||+..+++    -.+...+.+|.   ..|+.++|.|.-  
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~---dwVRDVAwaP~~gl  221 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHK---DWVRDVAWAPSVGL  221 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcc---hhhhhhhhccccCC
Confidence            999999999985   4           579999999999999998863    22333477898   799999999963  


Q ss_pred             --cEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          520 --IHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       520 --~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                        .+|++ +.||++.||..+..  .-..++.. .....+.+++||..|+.|+.++.|+.|.+|.-..
T Consensus       222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence              56777 59999999987632  11122221 2367899999999999999999999999997553

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=2e-23  Score=210.58  Aligned_cols=294  Identities=15%  Similarity=0.097  Sum_probs=210.1

Q ss_pred             EEEEEecC---CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          315 VRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       315 ~~~~~spd---g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      .++.|++.   ...|+.+..||.|.++|......              .++...+....   .|...|..+.|.  ...|
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f--------------r~ee~~lk~~~---aH~nAifDl~wapge~~l  115 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF--------------RLEERQLKKPL---AHKNAIFDLKWAPGESLL  115 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhc--------------chhhhhhcccc---cccceeEeeccCCCceeE
Confidence            44667652   34678888899999999765543              12222222222   699999999999  4578


Q ss_pred             EEEe-CCcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-----------------
Q 006126          390 FSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-----------------  447 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~--~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~-----------------  447 (660)
                      ++++ |.++++||+++++++..  +.+|...|.+++|.|++  .|++|+.||.|.|||++-..                 
T Consensus       116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~  195 (720)
T KOG0321|consen  116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT  195 (720)
T ss_pred             EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence            8888 99999999999998877  88999999999999998  99999999999999987321                 


Q ss_pred             ----------eeeEeeccCCCeEE---EEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeece-eeeeee--eccCCCCCCe
Q 006126          448 ----------TKAKLKGHQNRITC---LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSK-FLHSFQ--TGLVPETTIV  510 (660)
Q Consensus       448 ----------~~~~~~~~~~~v~~---l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~~~~-~~~~~~--~~~~~~~~~v  510 (660)
                                .+.....+...|.+   +.+..|...|++++. |+.|+|||++........ +.. ..  .-|....-.+
T Consensus       196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~  274 (720)
T KOG0321|consen  196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQ  274 (720)
T ss_pred             CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeee
Confidence                      11122334455555   566778889999887 999999999984332111 111 00  0111111457


Q ss_pred             EEEEEecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126          511 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ  587 (660)
Q Consensus       511 ~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~  587 (660)
                      .++.....|.+|.+ +.|+.|+.||+.+..  ++..+.+......-..-..+||+.++++|+.|...++|.+.+.+.--.
T Consensus       275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             EEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            78888888999988 799999999998643  333333221122233456689999999999999999999988764333


Q ss_pred             eecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          588 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       588 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      +..      ||   .+.+++|+|.|.+-.-++++++|-+++||++..+
T Consensus       355 ~l~------Gh---t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  355 LLL------GH---TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhh------Cc---ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            222      55   3446699999976667899999999999999665

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1.9e-23  Score=223.73  Aligned_cols=259  Identities=15%  Similarity=0.207  Sum_probs=205.9

Q ss_pred             CCCCeEEEEEecCCCEEEEEE--CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCC
Q 006126          310 FGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~  387 (660)
                      ++..|.++..+|||..++||+  .||.+.||+.+.-..                                          
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------------------------------------------   49 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------------------------------------------   49 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc------------------------------------------
Confidence            566799999999999999999  799999998543211                                          


Q ss_pred             EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC------------------Cce
Q 006126          388 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------------------KKT  448 (660)
Q Consensus       388 ~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~------------------~~~  448 (660)
                              ....+|..-.+.+.++..|.+.|+|+.|+||| +||+|++|+.|.||....                  .++
T Consensus        50 --------~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~  121 (942)
T KOG0973|consen   50 --------EKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV  121 (942)
T ss_pred             --------hhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE
Confidence                    00011111134556677899999999999999 999999999999998762                  135


Q ss_pred             eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126          449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE  527 (660)
Q Consensus       449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d  527 (660)
                      +..+.+|.+.|..+.|+|++.+|++++.|++|.+||.++.     ..+. ...+|.   +.|-.+.|.|-|+|+++ +.|
T Consensus       122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~-vl~~H~---s~VKGvs~DP~Gky~ASqsdD  192 (942)
T KOG0973|consen  122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLK-VLRGHQ---SLVKGVSWDPIGKYFASQSDD  192 (942)
T ss_pred             EEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-----eeee-eeeccc---ccccceEECCccCeeeeecCC
Confidence            6788999999999999999999999999999999999994     2333 677888   79999999999999999 899


Q ss_pred             CcEEEEeCCCCceeeeecCCC----CCCCeEEEEEccCCCEEEEEec----CCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126          528 GQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRCQINLTAYAQPGTI  599 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~sg~~----dg~I~iwd~~~~~~~~~~~~~~~~~~gh~  599 (660)
                      ++|++|++.+....+.+..+-    -...+..+.|||||++|++...    -..+.|.+..+.+.-..+.       ||+
T Consensus       193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-------GH~  265 (942)
T KOG0973|consen  193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-------GHS  265 (942)
T ss_pred             ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-------cCC
Confidence            999999987766666665431    1456889999999999998533    2468899988887666665       664


Q ss_pred             CcccceEEEEEecC-----C-------CC----EEEEEeCCCeEEEEeCCCCce
Q 006126          600 SLELYPLVIAAHPL-----E-------PN----RIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       600 ~~~v~~~~v~~sp~-----d-------~~----~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      . ++.  +++|+|.     .       ++    .+|+||.|++|-||.....++
T Consensus       266 ~-p~e--vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  266 A-PVE--VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             C-ceE--EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence            4 555  8999973     1       11    689999999999999876655

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.2e-23  Score=188.82  Aligned_cols=256  Identities=12%  Similarity=0.097  Sum_probs=198.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeCC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~~  444 (660)
                      .|.+.|..+...  |..|++++ |++|+|+.++..   +.+.++.+|.++|+.++|..  -| +|++++.||.|.||.-.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            688888887777  99999999 999999999764   56788999999999999976  56 99999999999999987


Q ss_pred             CCce--eeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--
Q 006126          445 TKKT--KAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--  518 (660)
Q Consensus       445 ~~~~--~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--  518 (660)
                      +|+-  ...+..|...|++++|.|.  |-.|++++.||.|.+.+.++.-   ......+...|.   -.|++++|.|.  
T Consensus        89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~---~GvnsVswapa~~  162 (299)
T KOG1332|consen   89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---GWTTSKIVFAHE---IGVNSVSWAPASA  162 (299)
T ss_pred             CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---Cccchhhhhccc---cccceeeecCcCC
Confidence            7743  3455679999999999985  5679999999999999998741   122223556777   58999999985  


Q ss_pred             -C-----------cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEEEECCC
Q 006126          519 -Q-----------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       519 -~-----------~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~sg~~dg~I~iwd~~~  581 (660)
                       |           +.|++ |.|+.|+||+..++.-+..-...+|...|..++|.|.-    .+|++++.||+|.||-...
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence             4           55788 69999999999876543332234589999999999864    5899999999999998763


Q ss_pred             CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          582 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      .......+...-     -...++  .++||+ .|+.|+.++.|+.|.+|.-+ .+++|.....
T Consensus       243 e~e~wk~tll~~-----f~~~~w--~vSWS~-sGn~LaVs~GdNkvtlwke~-~~Gkw~~v~~  296 (299)
T KOG1332|consen  243 EYEPWKKTLLEE-----FPDVVW--RVSWSL-SGNILAVSGGDNKVTLWKEN-VDGKWEEVGE  296 (299)
T ss_pred             ccCccccccccc-----CCcceE--EEEEec-cccEEEEecCCcEEEEEEeC-CCCcEEEccc
Confidence            211111111000     033466  999999 79999999999999999865 3466765443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7.9e-23  Score=189.77  Aligned_cols=286  Identities=16%  Similarity=0.160  Sum_probs=213.1

Q ss_pred             eEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEE
Q 006126          314 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS  391 (660)
Q Consensus       314 V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s  391 (660)
                      ..|+.|++.|.+||.|..||.+.|||+.+...                  +.++     .+|..+|.+++|+  |+.|++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------ar~l-----saH~~pi~sl~WS~dgr~Llt   82 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------ARML-----SAHVRPITSLCWSRDGRKLLT   82 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch------------------hhhh-----hccccceeEEEecCCCCEeee
Confidence            78999999999999999999999999866532                  1111     1799999999999  999999


Q ss_pred             Ee-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe-ec-----cCCCeEEE
Q 006126          392 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-KG-----HQNRITCL  462 (660)
Q Consensus       392 ~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~-~~-----~~~~v~~l  462 (660)
                      ++ |..|.+||+..|.+++.+. ...+|+.+.|+|..  .+++.-.+..-.+-++..+  .+++ ..     -.....+.
T Consensus        83 sS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~  159 (405)
T KOG1273|consen   83 SSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHG  159 (405)
T ss_pred             ecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccc
Confidence            99 9999999999999888875 56789999999977  4444444444455555432  2221 11     11122334


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC---
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL---  538 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~---  538 (660)
                      .|.+.|+++++|...|.+-++|..+-+++....+.+     .   ..|..+.++..|+.++. +.|..|+.|+++.-   
T Consensus       160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~---~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----V---QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             cccCCCCEEEEecCcceEEEEecchheeeeeeeech-----h---eeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence            689999999999999999999999976655544441     1   46889999999999999 79999999998621   


Q ss_pred             ----ce--eeeecCCCCCCCeEEEEEccCCCEEEEEecC-CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126          539 ----NH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH  611 (660)
Q Consensus       539 ----~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s  611 (660)
                          ++  .+.++.--....-.+++||.+|.|++.|+.- ..++||....|.+++.+.       |..+..  ...|.|+
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------G~kgE~--l~DV~wh  302 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------GTKGEE--LLDVNWH  302 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-------CCchhh--eeecccc
Confidence                11  1111110113345578999999999988753 679999999999999987       432222  3489999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          612 PLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       612 p~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                      | -...+++- ..|.|+||..... +.|+.++|.
T Consensus       303 p-~rp~i~si-~sg~v~iw~~~~~-enwsafAPd  333 (405)
T KOG1273|consen  303 P-VRPIIASI-ASGVVYIWAVVQV-ENWSAFAPD  333 (405)
T ss_pred             c-ceeeeeec-cCCceEEEEeecc-cchhhcCch
Confidence            9 45667766 7899999998765 468888864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=1.7e-21  Score=198.08  Aligned_cols=270  Identities=17%  Similarity=0.147  Sum_probs=196.9

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI  399 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l-~s~~-dg~I~i  399 (660)
                      ..+++++.|+.+.+||..+++.                     +....  ++ ..+.+++|+  +..+ ++++ ++.|++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~---------------------~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~   57 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEV---------------------TRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQV   57 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCce---------------------EEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEEE
Confidence            4678889999999998765543                     11111  22 335678888  6666 4555 799999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD  477 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d  477 (660)
                      ||..+++....+..+.. +..++|+|++ .++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+|+++++++.+
T Consensus        58 ~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~  135 (300)
T TIGR03866        58 IDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET  135 (300)
T ss_pred             EECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecC
Confidence            99999988877765443 4678999999 554 456789999999998887777753 3456889999999999998877


Q ss_pred             C-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC---C--
Q 006126          478 A-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK---M--  549 (660)
Q Consensus       478 g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~---~--  549 (660)
                      + .+..||.++++....     ...+     ..+..++|+|+|+++++ + .++.|++||+++++.+..+....   +  
T Consensus       136 ~~~~~~~d~~~~~~~~~-----~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~  205 (300)
T TIGR03866       136 TNMAHFIDTKTYEIVDN-----VLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE  205 (300)
T ss_pred             CCeEEEEeCCCCeEEEE-----EEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc
Confidence            5 467789887543221     1222     24567999999998876 4 58999999999988776654211   1  


Q ss_pred             CCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE-eCCCeE
Q 006126          550 DLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGRV  627 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~-s~Dg~v  627 (660)
                      ......++|+|++++++++ +.++.|.+||+.+++....+..         ...+.  +++|+| ++++|+++ +.+|.|
T Consensus       206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~--~~~~~~-~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---------GQRVW--QLAFTP-DEKYLLTTNGVSNDV  273 (300)
T ss_pred             cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---------CCCcc--eEEECC-CCCEEEEEcCCCCeE
Confidence            1224568899999986554 4567899999999887765431         22344  899999 89988876 568999


Q ss_pred             EEEeCCCCceeccC
Q 006126          628 HVIEPLESEVEWGK  641 (660)
Q Consensus       628 ~iw~~~~~~~~w~~  641 (660)
                      +|||+.+++.+...
T Consensus       274 ~v~d~~~~~~~~~~  287 (300)
T TIGR03866       274 SVIDVAALKVIKSI  287 (300)
T ss_pred             EEEECCCCcEEEEE
Confidence            99999999875444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.5e-22  Score=186.54  Aligned_cols=264  Identities=13%  Similarity=0.118  Sum_probs=202.2

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|.+..|+.+++||++++||...   ......++     |..++.+++|.++. .+++|+.||.|+.+|+.++... 
T Consensus        19 v~f~~~~~~LLvssWDgslrlYdv~~---~~l~~~~~-----~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSWDGSLRLYDVPA---NSLKLKFK-----HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             EEEcCcCCcEEEEeccCcEEEEeccc---hhhhhhee-----cCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce-
Confidence            58999999999999999999999985   22222222     89999999999855 4899999999999988766531 


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                        .     .+.|..+|.|+.++  .+.+++|+ |++|++||.........+... ..|.++..+
T Consensus        89 ------------------~-----igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~  144 (323)
T KOG1036|consen   89 ------------------Q-----IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS  144 (323)
T ss_pred             ------------------e-----eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc
Confidence                              1     12699999999999  77888999 999999999875555555433 377777665


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeeEe--eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          425 PQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       425 p~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      .+ .|++|+.|..|.+||+++.......  ..-+-.+.|+++-|++.-.++++-||.|.+=.++..+....+...  +..
T Consensus       145 g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya--FkC  221 (323)
T KOG1036|consen  145 GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA--FKC  221 (323)
T ss_pred             CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee--EEe
Confidence            44 8999999999999999976443222  224567899999998888999999999988766664221111111  222


Q ss_pred             cCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126          503 LVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       503 ~~~------~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      |..      -..+|++++|+|-...+++ |.||.|.+||+.+.+.+..+..  ....|.+++|+.||..||+++.
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK--YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC--CCCceEEEEeccCCCeEEEEec
Confidence            210      0147899999999889999 6999999999999888888754  2677999999999999999874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=2.7e-21  Score=190.11  Aligned_cols=345  Identities=12%  Similarity=0.162  Sum_probs=244.6

Q ss_pred             CCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC-------
Q 006126          261 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA-------  333 (660)
Q Consensus       261 ~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg-------  333 (660)
                      ...|....-+.|.|..+.....-+.+  ++.+     ...++. .  .||+..|.|++.+||--.+++|-..|       
T Consensus        64 G~dcR~Nly~lptgE~vyfvA~V~Vl--~n~e-----e~~Qr~-y--~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~  133 (626)
T KOG2106|consen   64 GVDCRNNLYLLPTGELVYFVAAVGVL--YNWE-----ERSQRH-Y--LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQ  133 (626)
T ss_pred             ceeeeceeEEccCccEEEEeccEEEE--Eeeh-----hhhccc-c--cCCCCceEEEeecCCceeeccCcccccCCCcCC
Confidence            33444445777888877766554444  4443     222222 1  35999999999999988888765544       


Q ss_pred             -cEEEEec------------cCCceeee-------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          334 -THKLWKW------------QSNKQSLE-------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       334 -~i~vw~~------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                       .+++||.            +.+-....             ..+.+.-..+||=..+.......  ..+..|....|+  
T Consensus       134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk--~sne~v~~a~FHPt  211 (626)
T KOG2106|consen  134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK--TSNEVVFLATFHPT  211 (626)
T ss_pred             CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce--eccceEEEEEeccC
Confidence             5899992            22211000             11112222455543333221111  245667888898  


Q ss_pred             -CCEEEEEeCCcEEEEECCCCeEEEE---EcCC-CCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126          386 -GSHLFSASGGKISIFSLETFQTLAT---FANP-PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT  460 (660)
Q Consensus       386 -~~~l~s~~dg~I~iwd~~~~~~~~~---~~~~-~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~  460 (660)
                       .+.+++++.|.+.+|+.+.+...++   |..+ ...|.|++|.++|.+++|..+|.|.||+..+.+..+....|.+.|.
T Consensus       212 d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~  291 (626)
T KOG2106|consen  212 DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF  291 (626)
T ss_pred             CCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE
Confidence             6678888899999999998876654   3322 3678999999999899999999999999988777777679999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece-------eee----------------------------eeeeccCC
Q 006126          461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-------FLH----------------------------SFQTGLVP  505 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~----------------------------~~~~~~~~  505 (660)
                      ++....+|.+|- |+.|+.|..||-.- +..+..       .++                            ....+|. 
T Consensus       292 ~L~~lr~GtllS-GgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~-  368 (626)
T KOG2106|consen  292 SLCMLRDGTLLS-GGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG-  368 (626)
T ss_pred             EEEEecCccEee-cCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc-
Confidence            999999996555 99999999999321 111100       000                            1123454 


Q ss_pred             CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126          506 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL  584 (660)
Q Consensus       506 ~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~  584 (660)
                        .....++.+|+...+++ +.|+.+++|+  ..++.-+...   ..++.++.|+|.| .++.|...|...+.|.++..+
T Consensus       369 --delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l  440 (626)
T KOG2106|consen  369 --DELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL  440 (626)
T ss_pred             --cceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEeccccee
Confidence              46778899999988988 6999999999  4555544433   6789999999999 999999999999999999766


Q ss_pred             EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126          585 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       585 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      +..-..         +.++.  +|+|+| +|.+||.|+.|+.|+||.+..+..++.
T Consensus       441 v~~~~d---------~~~ls--~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  441 VTIHTD---------NEQLS--VVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             EEEEec---------CCceE--EEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEE
Confidence            654331         33444  999999 899999999999999999987765543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.1e-23  Score=200.91  Aligned_cols=244  Identities=13%  Similarity=0.128  Sum_probs=193.6

Q ss_pred             CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126          386 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL  462 (660)
Q Consensus       386 ~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l  462 (660)
                      +.+++++.  ...+.+|.+..........--++.|.+++-+|+| +++.|+..|.|++|.+.+|..+..+.+|-..|+|+
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL  129 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL  129 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence            67888887  4689999997655444333456789999999999 88888899999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCC----eeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEE-EecCcEEEEeC
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQIDVYEA  535 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~-~~d~~i~iwd~  535 (660)
                      .|+.||.++++|+.||.|.+|++..-    ......++. .+.+|.   -+|+++...+.  ..++++ +.|.++++||+
T Consensus       130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHT---LSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             EEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCc---ceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence            99999999999999999999987431    111234555 677887   68999888764  345666 79999999999


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe--eE----EEeec---ccccCCCCcCcccceE
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LR----CQINL---TAYAQPGTISLELYPL  606 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--~~----~~~~~---~~~~~~gh~~~~v~~~  606 (660)
                      ..+..+.++..   ...+.+++++|-+..+++|+++|.|.+.++....  ..    +....   ......||.+ ...++
T Consensus       206 S~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-~~~IT  281 (476)
T KOG0646|consen  206 SLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-ESAIT  281 (476)
T ss_pred             ccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC-Cccee
Confidence            99999888865   7889999999999999999999999998876432  11    00000   0112336643 23355


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          607 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                      |++.+- ||..|++|+.||+|.|||+.+.++.
T Consensus       282 cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  282 CLAIST-DGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             EEEEec-CccEEEeeCCCCCEEEEecchHHHH
Confidence            888888 8999999999999999999988763

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=197.07  Aligned_cols=284  Identities=14%  Similarity=0.199  Sum_probs=221.5

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      ..++|.++.|+|.-+.|++++.||+++||.++....                   ..++...  -...+|.+.+|.  |.
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~--l~~fPi~~a~f~p~G~  270 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIH--LEKFPIQKAEFAPNGH  270 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeee--eccCccceeeecCCCc
Confidence            357899999999999999999999999998765432                   2222222  245778899999  66


Q ss_pred             -EEEEEe-CCcEEEEECCCCeEEEE--EcCCC-CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          388 -HLFSAS-GGKISIFSLETFQTLAT--FANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       388 -~l~s~~-dg~I~iwd~~~~~~~~~--~~~~~-~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                       .+++++ ....+.||+.+.+..+.  ..++. ..+.....+|++ .|+..+..|.|.+....+++.+..++ ..+.|..
T Consensus       271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~  349 (514)
T KOG2055|consen  271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD  349 (514)
T ss_pred             eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence             777777 78999999998765443  22333 456778899999 99999999999999999999999887 5788999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---  537 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~---  537 (660)
                      +.|+.|++.|++.+.+|.|.+||++...     ++++......   -.-++++.+++|.++|+| ..|.|.|||..+   
T Consensus       350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~-----~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  350 FTFSSDSKELLASGGTGEVYVWNLRQNS-----CLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA  421 (514)
T ss_pred             EEEecCCcEEEEEcCCceEEEEecCCcc-----eEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence            9999999999999999999999999953     3332222111   234568888999999996 668999999653   


Q ss_pred             ---CceeeeecCCCCCCCeEEEEEccCCCEEEEEec--CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126          538 ---LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       538 ---~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp  612 (660)
                         .+++.++..  -...|+++.|++|++.||.++.  +..+++-.+.+......++.. ...-|      +++|++|+|
T Consensus       422 s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg------~vtc~aFSP  492 (514)
T KOG2055|consen  422 STNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVG------HVTCMAFSP  492 (514)
T ss_pred             cCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCccc------ceEEEEecC
Confidence               344544432  2678999999999999987775  578999999988766666543 11112      366999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCC
Q 006126          613 LEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       613 ~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                       .+.+||.|..+|.|.+|++.
T Consensus       493 -~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  493 -NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             -CCceEEeecCCCceeeEeec
Confidence             89999999999999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=4.5e-23  Score=201.07  Aligned_cols=243  Identities=17%  Similarity=0.223  Sum_probs=187.1

Q ss_pred             CCCEEEEEeCCCcEEEEeccCcCCCccee-----eeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCcee
Q 006126          273 DADSAVCAKSLEKSVNLKLQLINEPSECR-----TLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +-..+|+++..+.+.|||...........     .++|.  ||...=.+++|++.. -+|++++.|++|++||+......
T Consensus       136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~  213 (422)
T KOG0264|consen  136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE  213 (422)
T ss_pred             CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence            44567788889999999998532222111     12343  488878889999854 47899999999999998766431


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECC--CCeEEEEEcCCCCCeEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATY  420 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~--~~~~~~~~~~~~~~v~~  420 (660)
                                      +..........+|...|..++|+   ...+++++ |+.+.|||++  +.++.....+|...|+|
T Consensus       214 ----------------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  214 ----------------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             ----------------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence                            11111111112799999999999   66788888 8999999999  56666777899999999


Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeec---
Q 006126          421 FILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCS---  493 (660)
Q Consensus       421 v~~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~---  493 (660)
                      ++|+|-+  .||+|+.|++|.+||+++- +++.++.+|...|.++.|+|+ ...|++++.|+.+.+||+........   
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed  357 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED  357 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence            9999977  9999999999999999874 578899999999999999995 56789999999999999976322110   


Q ss_pred             ---ee--eeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCC
Q 006126          494 ---KF--LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP  536 (660)
Q Consensus       494 ---~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~  536 (660)
                         .+  +--+-.||.   +.|..+.|+|+..+++++  .|+.+.||.+.
T Consensus       358 a~dgppEllF~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  358 AEDGPPELLFIHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hccCCcceeEEecCcc---cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence               01  111346777   799999999999998873  88999999985

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.1e-22  Score=194.92  Aligned_cols=285  Identities=13%  Similarity=0.144  Sum_probs=221.2

Q ss_pred             CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEEeccC
Q 006126          264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQS  342 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~  342 (660)
                      ....+.|+|....+++|+.|++++||-+.+...+ .++.+.|    -..+|.+++|.|+|. .+++++....+..||+.+
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            3344699999999999999999999999864433 4555545    367999999999998 888888889999998876


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCC-CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  418 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v  418 (660)
                      .+....                     ....++. ..+..+..+  +++|+..+ .|.|.+....+++.+.+++ -.+.|
T Consensus       290 ak~~k~---------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v  347 (514)
T KOG2055|consen  290 AKVTKL---------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVV  347 (514)
T ss_pred             cccccc---------------------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEE
Confidence            654111                     0111222 345556666  88999988 8999999999999988875 35678


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe--EEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-eece
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSK  494 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-~~~~  494 (660)
                      ..++|+.|+ .|++++.+|.|++||+++..+++.+.. .+.|  ++++.++++.+|++|+..|.|.|||..+... ...+
T Consensus       348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence            899999999 888888999999999999999998864 3334  4566778999999999999999999766211 1122


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEE-E--ecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEccCCCEEEEEec
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      ++.++ ..-.   ..|+++.|+||++.|+. +  .+..+++-.+.+......++... .-+.|+|++|||.|.++|.|..
T Consensus       427 Pik~~-dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  427 PIKTV-DNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             chhhh-hhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence            33311 1112   57999999999999987 3  67889999998877766665432 2467999999999999999999


Q ss_pred             CCeEEEEECC
Q 006126          571 SGHVKVFDTS  580 (660)
Q Consensus       571 dg~I~iwd~~  580 (660)
                      +|.|.+|.+.
T Consensus       503 ~grv~l~kL~  512 (514)
T KOG2055|consen  503 AGRVHLFKLH  512 (514)
T ss_pred             CCceeeEeec
Confidence            9999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=4.5e-22  Score=202.68  Aligned_cols=335  Identities=14%  Similarity=0.151  Sum_probs=242.9

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ..|+|++..+++-+..|..++|..++   .....+.... .||.+.|..++|+|.|+||++.|.|.+-++|-.-..+.  
T Consensus       322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d---~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~--  395 (764)
T KOG1063|consen  322 GLWSPNSNVIIAHGRTGGFHLWKTKD---KTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ--  395 (764)
T ss_pred             EEEcCCCCEEEEecccCcEEEEeccC---ccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeeccccccc--
Confidence            48999999999999999999999443   3444443233 57999999999999999999999999999875432211  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC--------------------
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------------------  404 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~--------------------  404 (660)
                                -|..-..       +.-|....+|+++-  ...+++|. ...+++|+...                    
T Consensus       396 ----------~wHEiaR-------PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~  458 (764)
T KOG1063|consen  396 ----------EWHEIAR-------PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL  458 (764)
T ss_pred             ----------ceeeecc-------cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence                      1321111       11377788888888  34566666 46778886521                    


Q ss_pred             -----------------------CeE----E-----------------------------EEEcCCCCCeEEEEEcCCC-
Q 006126          405 -----------------------FQT----L-----------------------------ATFANPPPIATYFILLPQD-  427 (660)
Q Consensus       405 -----------------------~~~----~-----------------------------~~~~~~~~~v~~v~~sp~~-  427 (660)
                                             |..    .                             ..+.+|...|.+++.+|++ 
T Consensus       459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn  538 (764)
T KOG1063|consen  459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN  538 (764)
T ss_pred             ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence                                   000    0                             1123578899999999999 


Q ss_pred             eEEEEeCCC-----eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          428 LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       428 ~l~s~~~d~-----~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      .+|+++...     .|++|+..+...++.+.+|.-.|+.++|+|||++|++.+.|+++.+|........ ..... ....
T Consensus       539 liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa-~~k~  616 (764)
T KOG1063|consen  539 LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD-EFRFA-CLKA  616 (764)
T ss_pred             EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch-hhhhc-cccc
Confidence            999988654     6999999988888899999999999999999999999999999999998553221 11122 2456


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEcc-----CCCEEEEEecCCeE
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSC-----DGKCIYVSCKSGHV  574 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~-----dg~~l~sg~~dg~I  574 (660)
                      |.   ..|.+..|+|++.++++ +.|.+|++|.....  +.+..+....+...|+.++|.|     .+..++.|-+.|.|
T Consensus       617 Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI  693 (764)
T KOG1063|consen  617 HT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI  693 (764)
T ss_pred             cc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence            66   58999999999999999 69999999999877  5555543345688999999975     23478889999999


Q ss_pred             EEEECCCCee-----EEEeecccccCCCCcCcccceEEEEEecCC---------CCEEEEEeCCCeEEEEeCC
Q 006126          575 KVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLE---------PNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       575 ~iwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d---------~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .+|....-..     ...+.. .....+.+...|+  .+.|.|..         ...|++|++|.++||+++.
T Consensus       694 ~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  694 VLWRRKREHRQVTVGTFNLDT-RLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             EEEecccccccccceeeeecc-ccccccChHHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            9999652111     111111 0111121244455  89999852         2247999999999999875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=5.1e-22  Score=182.74  Aligned_cols=278  Identities=14%  Similarity=0.150  Sum_probs=206.3

Q ss_pred             CCCEEEEEeCCCcEEEEeccCcCC--Ccce--eee----ecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCC
Q 006126          273 DADSAVCAKSLEKSVNLKLQLINE--PSEC--RTL----LLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       273 dg~~l~s~~~dg~i~iwd~~~~~~--~~~~--~~~----~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      .|+++++|+.||.|.+||++...+  ..-+  +..    .--..+|.-.|..+.|-| |.-.+.+++.|.+++|||..+.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl  134 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL  134 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence            689999999999999999986431  1111  111    011145888999999999 5567888899999999998776


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANPPPI  417 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~  417 (660)
                      +...          .+              ...+.|++-+++     ..++|+|. +-.|++-|+.+|.+-.++.+|...
T Consensus       135 Q~a~----------~F--------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  135 QEAV----------DF--------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             eeeE----------Ee--------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            5411          11              134456666666     34566666 789999999999999999999999


Q ss_pred             eEEEEEcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEe--------------eccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          418 ATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKL--------------KGHQNRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       418 v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                      |.++.|+|..  .|++|+.||.|++||++.. .+...+              ..|.+.|++++|+.++.++++++.|..+
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI  270 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence            9999999988  8999999999999999854 222222              3477889999999999999999999999


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS  559 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  559 (660)
                      ++|+..+|+..-.....   ..|....+.-..+. +-+...++. -.++.+.++++-.+..++.+..  |...+.+.++-
T Consensus       271 r~wn~~~G~ntl~~~g~---~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--h~k~i~c~~~~  344 (397)
T KOG4283|consen  271 RVWNMESGRNTLREFGP---IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--HLKRINCAAYR  344 (397)
T ss_pred             EEeecccCccccccccc---ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--ccceeeEEeec
Confidence            99999987642211111   11110001111122 223333333 4679999999999999988876  58889999999


Q ss_pred             cCCCEEEEEecCCeEEEEECC
Q 006126          560 CDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       560 ~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      |+-+...+|..|+.|+.|-..
T Consensus       345 ~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  345 PDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             CchhhhhccccCCcccccccc
Confidence            999999999999999999873

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.5e-24  Score=219.79  Aligned_cols=229  Identities=14%  Similarity=0.215  Sum_probs=201.7

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK  449 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~  449 (660)
                      .|...|.++..-  ++.+++|+ |..+.+|.+.....+..+.+|..+|.++.|+++. .|++|+.+|+|++||++.++.+
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence            477888887766  78889998 8889999998888888899999999999999999 9999999999999999999999


Q ss_pred             eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC
Q 006126          450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG  528 (660)
Q Consensus       450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~  528 (660)
                      +++.+|...+.++.|+|-+.+.++|+.|+.+++||++.     ..+.+ .+.+|.   ..+..+.|+|+|++++.+ .|.
T Consensus       106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~-~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSH-TYKSHT---RVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCcee-eecCCc---ceeEEEeecCCCceeeccCCcc
Confidence            99999999999999999999999999999999999986     23444 556676   678899999999999995 779


Q ss_pred             cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126          529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      .++|||+..|+....|..  |...+..+.|+|..-.+++|+.|+.|++||+++.+.+....+.        ...+.  +.
T Consensus       177 tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~v~--~~  244 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDGVR--SL  244 (825)
T ss_pred             eeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCCce--ee
Confidence            999999999999999865  6899999999999999999999999999999998887766532        23344  99


Q ss_pred             EEecCCCCEEEEEeCC
Q 006126          609 AAHPLEPNRIALGLTN  624 (660)
Q Consensus       609 ~~sp~d~~~l~s~s~D  624 (660)
                      +|+| ++..+++|..+
T Consensus       245 ~fn~-~~~~~~~G~q~  259 (825)
T KOG0267|consen  245 AFNP-DGKIVLSGEQI  259 (825)
T ss_pred             eecC-CceeeecCchh
Confidence            9999 89888887655

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.6e-22  Score=196.04  Aligned_cols=234  Identities=18%  Similarity=0.201  Sum_probs=189.0

Q ss_pred             CCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 006126          323 GDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS  398 (660)
Q Consensus       323 g~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~  398 (660)
                      ++|++++.. ...+.+|.+.....                    ..+..   --.++|.+++-+  |.+|+.|. .|.|+
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~--------------------~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lY  106 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQ--------------------VVQYI---VLPGPVHALASSNLGYFLLAGTISGNLY  106 (476)
T ss_pred             hhheeeecccCccccccccCchhh--------------------hhhhc---ccccceeeeecCCCceEEEeecccCcEE
Confidence            367777766 35788887765543                    11111   245779999988  88888887 89999


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC---------CCceeeEeeccCCCeEEEEEeCC-
Q 006126          399 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLS-  467 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~---------~~~~~~~~~~~~~~v~~l~~sp~-  467 (660)
                      +|.+.+|..+..+..|-..|+|+.|+.|| +|++|+.||.|.+|++.         +-++++.|..|.-+|+++...+. 
T Consensus       107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg  186 (476)
T KOG0646|consen  107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG  186 (476)
T ss_pred             EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence            99999999999999999999999999999 99999999999999864         23567889999999999988764 


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc------
Q 006126          468 -LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------  539 (660)
Q Consensus       468 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~------  539 (660)
                       ..+++++|.|.++++||+..+..+......          ..+.+++++|-++.+++| .+|.|.+.++....      
T Consensus       187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v  256 (476)
T KOG0646|consen  187 TNARLYTASEDRTIKLWDLSLGVLLLTITFP----------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV  256 (476)
T ss_pred             ccceEEEecCCceEEEEEeccceeeEEEecC----------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc
Confidence             468999999999999999997655443333          679999999999999995 89999998865322      


Q ss_pred             ----------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          540 ----------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       540 ----------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                                .+..+.++.....|+|++++-||..|++|+.||.|.|||+.+.+++.++.
T Consensus       257 ~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  257 NQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             cccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence                      23344443223499999999999999999999999999999998887765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-21  Score=205.05  Aligned_cols=274  Identities=15%  Similarity=0.163  Sum_probs=211.3

Q ss_pred             ecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCc-CCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126          259 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  337 (660)
Q Consensus       259 ~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~v  337 (660)
                      +........+.|.|+|++|++++.||.|++|+.... .++..+..       |...|.+++..  +.+|++|+.+++|.+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------~g~~v~~ia~~--s~~f~~~s~~~tv~~   80 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------SGELVSSIACY--SNHFLTGSEQNTVLR   80 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------cCceeEEEeec--ccceEEeeccceEEE
Confidence            344444555699999999999999999999998753 22221111       46677776654  458999999999999


Q ss_pred             EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126          338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP  414 (660)
Q Consensus       338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~  414 (660)
                      |.+..+..                  +..+.     ...-++++++|+  |+++|.|+ |-.|++.++.+....+.+++|
T Consensus        81 y~fps~~~------------------~~iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh  137 (933)
T KOG1274|consen   81 YKFPSGEE------------------DTILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH  137 (933)
T ss_pred             eeCCCCCc------------------cceee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence            98876653                  11111     245678899999  78999999 789999999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-------c-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------H-QNRITCLAYSLSLNVLVSSGADAQLCVWDA  485 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-------~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~  485 (660)
                      ..+|.++.|+|.+ .||+.+.||.|++||+.++.+..++.+       . ...+..++|+|+|..++..+.|+.|++|+.
T Consensus       138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r  217 (933)
T KOG1274|consen  138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR  217 (933)
T ss_pred             CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence            9999999999999 999999999999999999987776643       1 345667899999888888999999999999


Q ss_pred             CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCE
Q 006126          486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC  564 (660)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~  564 (660)
                      .+++....  +.  ...+.   +.+..+.|+|+|+|||++ .+|.|.|||.++...      +.....|++++|-|+++-
T Consensus       218 ~~we~~f~--Lr--~~~~s---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~  284 (933)
T KOG1274|consen  218 KGWELQFK--LR--DKLSS---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANA  284 (933)
T ss_pred             CCceehee--ec--ccccc---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCe
Confidence            99765322  21  11222   458999999999999995 999999999987222      223778999999999876


Q ss_pred             EEEEecCCeEEEE
Q 006126          565 IYVSCKSGHVKVF  577 (660)
Q Consensus       565 l~sg~~dg~I~iw  577 (660)
                      +-.-...|...+|
T Consensus       285 it~~~~~g~~~~~  297 (933)
T KOG1274|consen  285 ITLITALGTLGVS  297 (933)
T ss_pred             eEEEeeccccccC
Confidence            6544444444333

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.9e-23  Score=211.05  Aligned_cols=282  Identities=13%  Similarity=0.193  Sum_probs=209.9

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCC-CCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCcee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN-SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~-~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      ...++-..++.++. ..++++.+........+... +... .-.-.+..+.|+. +.++|||++..|.|.+||+..... 
T Consensus        46 s~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~-~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-  122 (839)
T KOG0269|consen   46 SVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHR-FKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-  122 (839)
T ss_pred             eecCCcceeEEecc-cceeeEeeCcccCCcceeee-cccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc-
Confidence            55566666666654 34556655432222222211 1110 0012345577764 567999999999999999876311 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                                       ...+. .+. .|...+.++.|+   ..+|++|+ ||+|++||++..+...++.+....|+.+.
T Consensus       123 -----------------nk~l~-~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~  183 (839)
T KOG0269|consen  123 -----------------NKLLT-VFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK  183 (839)
T ss_pred             -----------------chhhh-Hhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence                             00111 111 599999999999   78999999 99999999999999999999999999999


Q ss_pred             EcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          423 LLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       423 ~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      |+|..  .|+++.+.|.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+......+.  
T Consensus       184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--  261 (839)
T KOG0269|consen  184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--  261 (839)
T ss_pred             eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--
Confidence            99976  9999999999999999864 566788899999999999999999999999999999999986543333333  


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEcc-CCCEEEEEecCCe
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGH  573 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~  573 (660)
                       ..     .+|.++.|-|+..+.++ +   .|-.|+|||++..-. ..++.  .|...++.++|.. |...+.+++.||.
T Consensus       262 -Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  262 -TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             -ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccH
Confidence             22     57999999998776554 3   678999999976443 34443  4799999999964 5678889999998


Q ss_pred             EEEEECCCC
Q 006126          574 VKVFDTSTL  582 (660)
Q Consensus       574 I~iwd~~~~  582 (660)
                      |..-..+++
T Consensus       334 v~qh~~kna  342 (839)
T KOG0269|consen  334 VLQHLFKNA  342 (839)
T ss_pred             HHHhhhhcc
Confidence            876666554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=9.6e-23  Score=209.98  Aligned_cols=289  Identities=14%  Similarity=0.105  Sum_probs=216.3

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CC
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS  387 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~  387 (660)
                      ......+...++-..++.++. ..++|+.+........       ..+.. .+..        .-...+..|.|.   .+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~-------~~~~~-k~kq--------n~~~S~~DVkW~~~~~N  101 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEK-------CNHRF-KTKQ--------NKFYSAADVKWGQLYSN  101 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcc-------eeeec-cccc--------ceeeehhhcccccchhh
Confidence            445677777788877777765 4566776655433111       11111 0000        111235567777   78


Q ss_pred             EEEEEe-CCcEEEEECCC---CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          388 HLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      +||+++ .|.|.+||+..   .+.+..|..|...++++.|++..  +|++|+.||+|++||++..+...++.+....|..
T Consensus       102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD  181 (839)
T KOG0269|consen  102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD  181 (839)
T ss_pred             hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence            999999 89999999987   55666788999999999999988  9999999999999999999999999998999999


Q ss_pred             EEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126          462 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN  539 (660)
Q Consensus       462 l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~  539 (660)
                      ++|+| .+..++++...|.+.+||++...    .+.. .+..|.   ++|.++.|+|++.+||+ |.|+.|+|||+.+.+
T Consensus       182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~-k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  182 VKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEK-KLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             eeeccCCCceEEEecCCceEEEeeccCch----hHHH-Hhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            99999 67889999999999999999853    3333 456787   79999999999999999 599999999997655


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCE-EEEEe--cCCeEEEEECCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKC-IYVSC--KSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP  615 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~-l~sg~--~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~  615 (660)
                      ....... ....+|.++.|-|+..+ |++++  .|-.|+|||++.. -+..++.       .| ...+  +.++|-..|.
T Consensus       254 ~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-------eH-~~~v--t~i~W~~~d~  322 (839)
T KOG0269|consen  254 AKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-------EH-TDSV--TGIAWDSGDR  322 (839)
T ss_pred             ccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-------cc-Cccc--cceeccCCCc
Confidence            4322222 13789999999998765 55444  3788999999754 2333333       22 3333  4889977677


Q ss_pred             CEEEEEeCCCeEEEEeCCCC
Q 006126          616 NRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       616 ~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ..+.+++.||+|..-.+.++
T Consensus       323 ~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  323 INLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeEeecCccHHHHhhhhcc
Confidence            88999999999876555543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=1.4e-21  Score=182.64  Aligned_cols=293  Identities=14%  Similarity=0.141  Sum_probs=208.5

Q ss_pred             CCCCeEEEEEec----CC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126          310 FGGRVVRLIYSH----SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       310 h~~~V~~~~~sp----dg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      |..+|..++|++    +. +.++++| ...+.+|+......          +        ..++.+..+.|....+.++|
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~----------i--------r~lq~y~D~d~~Esfytcsw   97 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG----------I--------RLLQSYADEDHDESFYTCSW   97 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc----------e--------eeeeeccCCCCCcceEEEEE
Confidence            889999999985    22 3344444 45677776554321          0        12333333357888888999


Q ss_pred             e------CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe---
Q 006126          385 R------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL---  452 (660)
Q Consensus       385 s------~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~---  452 (660)
                      +      +-++|.|+ -|.|+|.|+.++++...+.+|...|+.+.+.|+.  ++++++.|.+|++|++++..++..+   
T Consensus        98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~  177 (385)
T KOG1034|consen   98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV  177 (385)
T ss_pred             EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence            8      33677777 8999999999999999999999999999999999  9999999999999999999999887   


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec-------------eeee---------eeeeccCCCCCCe
Q 006126          453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-------------KFLH---------SFQTGLVPETTIV  510 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~---------~~~~~~~~~~~~v  510 (660)
                      .+|.+.|.++.|+++|.++++++.|.++++|++...+....             .++.         +...-|.   ..|
T Consensus       178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr---nyV  254 (385)
T KOG1034|consen  178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR---NYV  254 (385)
T ss_pred             ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc---chH
Confidence            45999999999999999999999999999999985321110             0000         0011122   234


Q ss_pred             EEEEEecCCcEEEE-EecCcEEEEeC-CCCceeeeecCC-----------CCCCCeEEE--EEccCCCEEEEEecCCeEE
Q 006126          511 NHIQFHPDQIHLLS-IHEGQIDVYEA-PTLNHTSQLVPD-----------KMDLPITYA--TYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       511 ~~~~~sp~~~~l~~-~~d~~i~iwd~-~~~~~~~~~~~~-----------~~~~~v~~~--~~s~dg~~l~sg~~dg~I~  575 (660)
                      .|+.|-  |.++++ +.++.|..|.. +-++.+......           -....|+-+  +|+|-+++||.|...|.|+
T Consensus       255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~  332 (385)
T KOG1034|consen  255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY  332 (385)
T ss_pred             HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence            444444  577888 78889999987 212211111110           013344444  4567789999999999999


Q ss_pred             EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +||++..+....-... ... +  ...|.  ..+|+. |+.+|+...+|++|.-||.-
T Consensus       333 vwdL~~~ep~~~ttl~-~s~-~--~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  333 VWDLDNNEPPKCTTLT-HSK-S--GSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEECCCCCCccCceEE-ecc-c--cceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            9999987663211111 000 1  33344  889999 89999999999999999853

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.3e-21  Score=177.38  Aligned_cols=254  Identities=12%  Similarity=0.118  Sum_probs=185.1

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCP  443 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~  443 (660)
                      +|.+-|.++.|.  |+.+|+|+ |++|+|||..+    ..+....+.|.+.|..+.|.+-.   .+|+++.|+++.||.=
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            799999999999  99999999 99999999643    34666778999999999997654   9999999999999974


Q ss_pred             CC---------CceeeEeeccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------eeeccCC
Q 006126          444 CT---------KKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------FQTGLVP  505 (660)
Q Consensus       444 ~~---------~~~~~~~~~~~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~  505 (660)
                      ..         .....++....+.|+.+.|.|  -|-.|++++.||.+|||+.-..-....-.++.       .+..+. 
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~-  169 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK-  169 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc-
Confidence            21         122345566778999999999  47789999999999999875532222221110       011122 


Q ss_pred             CCCCeEEEEEecC---CcEEEEEecC------cEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccC----CCEEEEEec
Q 006126          506 ETTIVNHIQFHPD---QIHLLSIHEG------QIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCD----GKCIYVSCK  570 (660)
Q Consensus       506 ~~~~v~~~~~sp~---~~~l~~~~d~------~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~d----g~~l~sg~~  570 (660)
                        ....|+.|+|.   ..+|++|.+.      .+.||....+  +....-...+|..+|++++|.|+    -..||+++.
T Consensus       170 --~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  170 --QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             --CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence              46778999974   4577777555      7889886543  22222222357999999999986    357999999


Q ss_pred             CCeEEEEECCCC------------eeEEEeeccccc-CCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          571 SGHVKVFDTSTL------------ELRCQINLTAYA-QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       571 dg~I~iwd~~~~------------~~~~~~~~~~~~-~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      || |+||++...            .....++..... ..+| ...++  .+.|+- .|..|++.|+||+||+|+..-.
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVW--RVRWNM-TGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceE--EEEEee-eeeEEeecCCCceeeehhhhhh
Confidence            99 999998731            112222222111 2244 66677  999999 7999999999999999997644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-21  Score=191.81  Aligned_cols=294  Identities=16%  Similarity=0.174  Sum_probs=216.8

Q ss_pred             EEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE--CCCcEEEEeccCCceeeeeeccce
Q 006126          277 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       277 l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s--~dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      |..++...++++||+........+...+     ....+..+.|+.... |++++  .|..+++|.-...           
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-----------   67 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-----------   67 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccce-EEEeecCCceeEEEecccCC-----------
Confidence            3345555679999998644333333322     244589999988764 55544  4778888863322           


Q ss_pred             eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE
Q 006126          355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA  430 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~  430 (660)
                              ++++-.....++  ..-.|++..  ..++++|+ .+.|+|||++...+.+.++.|...|+++.++..+ +|+
T Consensus        68 --------~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA  137 (673)
T KOG4378|consen   68 --------TPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA  137 (673)
T ss_pred             --------CCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE
Confidence                    111111111111  233344443  67889999 8999999999888888899999999999999999 999


Q ss_pred             EEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126          431 FGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  508 (660)
Q Consensus       431 s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  508 (660)
                      +++..|.|.|..+.++..-..|... ...|.-+.|+|..++ |.+++.+|.|.+||+...     .++......|.   .
T Consensus       138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~Hs---A  209 (673)
T KOG4378|consen  138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHS---A  209 (673)
T ss_pred             EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----Ccccchhhhcc---C
Confidence            9999999999999999888888654 345668999997765 567889999999999873     33333556677   6


Q ss_pred             CeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeE
Q 006126          509 IVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELR  585 (660)
Q Consensus       509 ~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~  585 (660)
                      +...++|+|....|++  |.|..|.+||....+....+.-   ..+...++|+++|.+|+.|...|.|+.||++. ..++
T Consensus       210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence            8889999998776665  6999999999998877777754   77899999999999999999999999999986 4556


Q ss_pred             EEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      .++..|        +..  +++++|-| .. .+++
T Consensus       287 ~v~sah--------~~s--Vt~vafq~-s~-tvlt  309 (673)
T KOG4378|consen  287 AVRSAH--------DAS--VTRVAFQP-SP-TVLT  309 (673)
T ss_pred             eEeeec--------ccc--eeEEEeee-cc-eeee
Confidence            666543        433  45999988 33 4443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2.4e-21  Score=194.18  Aligned_cols=282  Identities=15%  Similarity=0.191  Sum_probs=205.4

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      .||++.|.++...|.|.+|++|+.||+++||.+.++.+...                     .   ...+.|.||+|+  
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~---------------------~---~~d~~I~~vaw~P~  452 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT---------------------V---QFDSEIRSVAWNPL  452 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE---------------------E---eecceeEEEEecCC
Confidence            45999999999999999999999999999999887766322                     1   123345566665  


Q ss_pred             C--CEEEEEeC---------------------------------CcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCC
Q 006126          386 G--SHLFSASG---------------------------------GKISIFSLETF----QTLATFANPPPIATYFILLPQ  426 (660)
Q Consensus       386 ~--~~l~s~~d---------------------------------g~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~  426 (660)
                      +  ..||++-+                                 +.+..|.-...    .-++....|...|..+.|+..
T Consensus       453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            1  12333323                                 23344433210    112333467888999999999


Q ss_pred             C-eEEEEeCCC---eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          427 D-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       427 ~-~l~s~~~d~---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      | +|++...++   .|.|+++.......-|....+.|.++.|+|...+|++++ ...|++||+...+.     ++.+..+
T Consensus       533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqel-----vKkL~tg  606 (733)
T KOG0650|consen  533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQEL-----VKKLLTG  606 (733)
T ss_pred             CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHH-----HHHHhcC
Confidence            9 888876544   799999988877777766778899999999998888876 57899999987432     3323333


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      -    .+|.+++.+|.|..|++ +.|+.+..+|+.-. ++.+++.  .|...+++++|++.-.++++|+.||.+.||.-.
T Consensus       607 ~----kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~  680 (733)
T KOG0650|consen  607 S----KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM  680 (733)
T ss_pred             C----eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence            3    48999999999998888 59999999999754 4555554  378999999999999999999999999998632


Q ss_pred             ------CCeeEEEeecccccCCCCcC-cccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          581 ------TLELRCQINLTAYAQPGTIS-LELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       581 ------~~~~~~~~~~~~~~~~gh~~-~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                            ..-++-.+    ....||.. +..-++.+.||| ...+|.++|.||+|++|
T Consensus       681 VY~Dl~qnpliVPl----K~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  681 VYNDLLQNPLIVPL----KRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eehhhhcCCceEee----eeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence                  11111111    12235532 234467889999 68899999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.9e-23  Score=212.12  Aligned_cols=252  Identities=18%  Similarity=0.187  Sum_probs=211.7

Q ss_pred             CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126          274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      +.+++....+-.+++||...           +.  .|...|.|+..-..++.+++|+.|..+-+|.+.....        
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~-----------~~--~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--------   62 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE-----------FV--AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--------   62 (825)
T ss_pred             ccccceeeeeeccccccchh-----------hh--hhhhhhceeeeeccceeeccCCCceeeccccccCCch--------
Confidence            34455566667788998763           11  1788999998878889999999999998887654322        


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF  429 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l  429 (660)
                             .     +. +  .+|..+|.++.|+  ..+|++|. +|+|++||++.++.++++.+|...+.++.|+|-+ ++
T Consensus        63 -------i-----~S-~--~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~  127 (825)
T KOG0267|consen   63 -------I-----TS-L--TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF  127 (825)
T ss_pred             -------h-----he-e--eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe
Confidence                   1     11 1  1799999999999  55666677 8999999999999999999999999999999999 99


Q ss_pred             EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126          430 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI  509 (660)
Q Consensus       430 ~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  509 (660)
                      ++|+.|+.+++||.+..-+.+.+.+|...|.++.|+|+|+++++++.|.++++||...|+..     . .+.+|.   +.
T Consensus       128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-----~-ef~~~e---~~  198 (825)
T KOG0267|consen  128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-----K-EFKSHE---GK  198 (825)
T ss_pred             ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-----c-cccccc---cc
Confidence            99999999999999988899999999999999999999999999999999999999886533     2 345666   68


Q ss_pred             eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126          510 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG  572 (660)
Q Consensus       510 v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg  572 (660)
                      +.++.|+|..-.++. |.|+++++||+++.+.+.....  ....|.+.+|+|++..+++|..+.
T Consensus       199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccccccCchhhhhccCCCCceeeeeccceeEEeeccCC--ccCCceeeeecCCceeeecCchhh
Confidence            999999998877877 5999999999998888777654  378899999999999999987654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=3.3e-21  Score=187.70  Aligned_cols=292  Identities=17%  Similarity=0.232  Sum_probs=210.9

Q ss_pred             CCCCeEEEEEecCCC--EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          310 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~--~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      |..+|.+++|+|..+  .+|+|+.-|+|-+||+.+....               .++..+.    ..|..+|.++.|+  
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------~d~v~~f----~~hs~~Vs~l~F~P~  245 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------KDGVYLF----TPHSGPVSGLKFSPA  245 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------cCceEEe----ccCCccccceEecCC
Confidence            789999999999764  6777888899999999643320               1111111    1699999999999  


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCe
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI  459 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v  459 (660)
                       ...+++.+ ||+|+.-|++.+....  ........+..+.|+.+. .++.+..=|...+||.+++.. ...+.-|...|
T Consensus       246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI  325 (498)
T KOG4328|consen  246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI  325 (498)
T ss_pred             ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence             45677777 9999999998764433  233345566788888888 777787777999999998755 56667788999


Q ss_pred             EEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-
Q 006126          460 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-  536 (660)
Q Consensus       460 ~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-  536 (660)
                      .+++++|.. .+|++++.|++.+|||++.-.......+.  ...|.   ..|.+..|||++-.|++ +.|..|+|||.. 
T Consensus       326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls--t~~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~  400 (498)
T KOG4328|consen  326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS--TLPHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC  400 (498)
T ss_pred             ceeecCCCCchheeecccCcceeeeehhhhcCCCCccee--ccccc---ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence            999999954 56899999999999999984332221133  23455   58999999998777887 899999999983 


Q ss_pred             ---CCceeeeecCC-CCCC--CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126          537 ---TLNHTSQLVPD-KMDL--PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA  610 (660)
Q Consensus       537 ---~~~~~~~~~~~-~~~~--~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~  610 (660)
                         ...+..++.-. .+..  ......|.|+..++++|..-..|-|||-..++.+..+..+.       ...|. ....|
T Consensus       401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-------~~tI~-~vn~~  472 (498)
T KOG4328|consen  401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-------SSTIP-SVNEF  472 (498)
T ss_pred             ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-------ccccc-cceee
Confidence               33333333211 0111  23467899999999999999999999999999887764221       11222 14689


Q ss_pred             ecCCCC-EEEEEeCCCeEEEEeCCC
Q 006126          611 HPLEPN-RIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       611 sp~d~~-~l~s~s~Dg~v~iw~~~~  634 (660)
                      || -+. +++.++.-|.|+||--..
T Consensus       473 HP-~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  473 HP-MRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             cc-cccceeccCCccceEEEEecCC
Confidence            99 455 455555678899886543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-20  Score=175.37  Aligned_cols=276  Identities=11%  Similarity=0.043  Sum_probs=203.8

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|++.|.+||+|..||.|.|||+.+    ..... .+.  +|..+|.+++||+||+.|+|+|.|..|.+||+..+..  
T Consensus        29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T----~~iar-~ls--aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--   99 (405)
T KOG1273|consen   29 CQFSRWGDYLAVGCANGRVVIYDFDT----FRIAR-MLS--AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--   99 (405)
T ss_pred             EEeccCcceeeeeccCCcEEEEEccc----cchhh-hhh--ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--
Confidence            49999999999999999999999984    32222 143  3999999999999999999999999999998876653  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEc-CC----CCCe
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA-NP----PPIA  418 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~----~~~v  418 (660)
                                         ++..   ....+|+.+.|+   .+..++.- +..-.+-++..++.. .+. ..    +...
T Consensus       100 -------------------l~ri---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen  100 -------------------LKRI---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSA  156 (405)
T ss_pred             -------------------eeEE---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccc
Confidence                               1111   256778888888   23333333 554555555442211 111 11    1122


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-------e
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGW-------K  489 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~-------~  489 (660)
                      .+..|.+.| ++++|...|.+.++|..+-+++..++-.. ..|..+.++..|++|+..+.|+.||.|+++.-       +
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e  236 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE  236 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence            344688899 99999999999999999999998887655 78999999999999999999999999998741       1


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  567 (660)
                      ......++.+.. .    ..-.+++|+.+|.|++++  ....++||.-..|.+++.+.+.. +.....+.|+|-...+++
T Consensus       237 ~e~~~K~qDvVN-k----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  237 VEPEHKLQDVVN-K----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEELLDVNWHPVRPIIAS  310 (405)
T ss_pred             cChhHHHHHHHh-h----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhheeecccccceeeeee
Confidence            100011110000 0    234578999999999984  56789999999999999987642 467888999999888888


Q ss_pred             EecCCeEEEEECCCC
Q 006126          568 SCKSGHVKVFDTSTL  582 (660)
Q Consensus       568 g~~dg~I~iwd~~~~  582 (660)
                      - ..|.|+||.....
T Consensus       311 i-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  311 I-ASGVVYIWAVVQV  324 (405)
T ss_pred             c-cCCceEEEEeecc
Confidence            7 6799999987653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.6e-20  Score=188.30  Aligned_cols=304  Identities=13%  Similarity=0.102  Sum_probs=224.8

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      +--+|+||.. |.++           +..|.|.+|++|+.||+++||.+.+    +.|.....    ..+.|.|++|+|.
T Consensus       392 ~~lvyrGHtg~Vr~i-----------Svdp~G~wlasGsdDGtvriWEi~T----gRcvr~~~----~d~~I~~vaw~P~  452 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSI-----------SVDPSGEWLASGSDDGTVRIWEIAT----GRCVRTVQ----FDSEIRSVAWNPL  452 (733)
T ss_pred             eeeeEeccCCeEEEE-----------EecCCcceeeecCCCCcEEEEEeec----ceEEEEEe----ecceeEEEEecCC
Confidence            3346788887 5554           7889999999999999999999994    66654322    3679999999997


Q ss_pred             CC-EEEEEECCCcEEEEeccCCceee--------e-e---eccceeEEEecCCCCc----eeeecccCCCCCCeEEEEEe
Q 006126          323 GD-FLVALTQTATHKLWKWQSNKQSL--------E-E---ENVNMESQLYQPSSKL----VMTNDIAADPKDSISCFALR  385 (660)
Q Consensus       323 g~-~l~s~s~dg~i~vw~~~~~~~~~--------~-~---~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s  385 (660)
                      +. .+++++....+.|-+..-+....        . .   ......+..|...+..    -+...+  .|...|..+.|+
T Consensus       453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtWH  530 (733)
T KOG0650|consen  453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTWH  530 (733)
T ss_pred             CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeeee
Confidence            75 33344444445555543331110        0 1   1222345678654221    111222  589999999999


Q ss_pred             --CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126          386 --GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  458 (660)
Q Consensus       386 --~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~  458 (660)
                        |.||++.. +   ..|.|.++........|....+.|.++.|+|.. ++++++ -..|+|||+.....++++......
T Consensus       531 rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kw  609 (733)
T KOG0650|consen  531 RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKW  609 (733)
T ss_pred             cCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCee
Confidence              99999987 4   479999998877776776677789999999999 777776 457999999988888888777788


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT  537 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~  537 (660)
                      |..++.+|.|.-|+.|+.|+.+..+|+.-.    .++.+ ....|.   ..+++++|++.-.+++++ .||++.|+.-.-
T Consensus       610 iS~msihp~GDnli~gs~d~k~~WfDldls----skPyk-~lr~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V  681 (733)
T KOG0650|consen  610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLS----SKPYK-TLRLHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHGMV  681 (733)
T ss_pred             eeeeeecCCCCeEEEecCCCeeEEEEcccC----cchhH-Hhhhhh---hhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence            999999999999999999999999999763    24555 455666   689999999999999995 679998886321


Q ss_pred             -------C--ceeeeecCCC--CCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          538 -------L--NHTSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       538 -------~--~~~~~~~~~~--~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                             .  -++..+.++.  ....|..+.|+|...+|++++.||+|++|
T Consensus       682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                   1  1344454421  13458899999999999999999999998

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.9e-20  Score=171.62  Aligned_cols=257  Identities=11%  Similarity=0.169  Sum_probs=186.8

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      .+|.+-|.++.|.+-|+.+|+|+.|++++|||......            -|...+.       -..|.+.|..+.|.  
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~------------~W~~Ts~-------Wrah~~Si~rV~WAhP   70 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG------------TWSCTSS-------WRAHDGSIWRVVWAHP   70 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC------------ceEEeee-------EEecCCcEEEEEecCc
Confidence            35899999999999999999999999999999754432            1221110       01599999999998  


Q ss_pred             --CCEEEEEe-CCcEEEEECC---------CCeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCC----
Q 006126          386 --GSHLFSAS-GGKISIFSLE---------TFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK----  446 (660)
Q Consensus       386 --~~~l~s~~-dg~I~iwd~~---------~~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~----  446 (660)
                        |+.+|+++ |+++.||.-.         ......++......|+.+.|.|..   .+++++.||.++||+.-.-    
T Consensus        71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs  150 (361)
T KOG2445|consen   71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS  150 (361)
T ss_pred             cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence              99999999 9999999752         123345566777899999999965   9999999999999986432    


Q ss_pred             --ceeeEee-------ccCCCeEEEEEeCC---CCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126          447 --KTKAKLK-------GHQNRITCLAYSLS---LNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI  509 (660)
Q Consensus       447 --~~~~~~~-------~~~~~v~~l~~sp~---~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  509 (660)
                        ...+.+.       .+..+-.|+.|+|.   ..+|+.|+.+     +.+.||....+... ...+. ...+|.   .+
T Consensus       151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-w~kva-~L~d~~---dp  225 (361)
T KOG2445|consen  151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-WLKVA-ELPDHT---DP  225 (361)
T ss_pred             cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-eeeeh-hcCCCC---Cc
Confidence              2222222       35667889999973   4567777765     47889987664321 12333 233777   79


Q ss_pred             eEEEEEecC----CcEEEE-EecCcEEEEeCCCCc-----------------eeeeec-CCCCCCCeEEEEEccCCCEEE
Q 006126          510 VNHIQFHPD----QIHLLS-IHEGQIDVYEAPTLN-----------------HTSQLV-PDKMDLPITYATYSCDGKCIY  566 (660)
Q Consensus       510 v~~~~~sp~----~~~l~~-~~d~~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~dg~~l~  566 (660)
                      |++++|.|+    -..|++ +.|| |+||.+....                 .+..+. .++|++.|..+.|+-.|..|+
T Consensus       226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS  304 (361)
T ss_pred             ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence            999999995    245666 5888 9999986311                 111111 245899999999999999999


Q ss_pred             EEecCCeEEEEECCC---CeeEEEee
Q 006126          567 VSCKSGHVKVFDTST---LELRCQIN  589 (660)
Q Consensus       567 sg~~dg~I~iwd~~~---~~~~~~~~  589 (660)
                      +.|.||.||+|...-   .++...+.
T Consensus       305 StGdDG~VRLWkany~n~~kC~sv~~  330 (361)
T KOG2445|consen  305 STGDDGCVRLWKANYNNLWKCTSVLK  330 (361)
T ss_pred             ecCCCceeeehhhhhhhhheeeeEEe
Confidence            999999999998643   33444444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=173.54  Aligned_cols=275  Identities=14%  Similarity=0.121  Sum_probs=196.7

Q ss_pred             CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCc----eeeecccCCCCCCeEEEEEe---
Q 006126          313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL----VMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      -...+.|||||..|++-+.|..+.+|++.....              +.+.+.    .+...........|+..+|.   
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dly--------------s~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M  116 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLY--------------SKKADGPLNFSKHLSYRYQEGETVYDYCWYSRM  116 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhc--------------ccCCCCccccccceeEEeccCCEEEEEEeeecc
Confidence            345689999999999999999999999876543              111100    00000000134556666665   


Q ss_pred             ------CCEEEEEe-CCcEEEEECCCCeEEEEEcCC--CC---CeEEEEEcCCC-eEEEEeCCCeEEEEeC-CCCceeeE
Q 006126          386 ------GSHLFSAS-GGKISIFSLETFQTLATFANP--PP---IATYFILLPQD-LFAFGFDDSSILVHCP-CTKKTKAK  451 (660)
Q Consensus       386 ------~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~--~~---~v~~v~~sp~~-~l~s~~~d~~I~iwd~-~~~~~~~~  451 (660)
                            ..++++.+ +.-|++||.-+|+....+...  ..   ...+++|+||| +|++| ..+.|+++|+ +.|.....
T Consensus       117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~v  195 (406)
T KOG2919|consen  117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPV  195 (406)
T ss_pred             ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcc
Confidence                  34666777 899999999999988877632  22   34689999999 77655 5789999998 66643322


Q ss_pred             e-------eccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          452 L-------KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       452 ~-------~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                      +       .+..+-|.|++|+| +.+.+++|+...++-||.-..     ..++. +..+|.   +.|+.+.|.++|+.|.
T Consensus       196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----~~pl~-llggh~---gGvThL~~~edGn~lf  266 (406)
T KOG2919|consen  196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----RRPLQ-LLGGHG---GGVTHLQWCEDGNKLF  266 (406)
T ss_pred             hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-----CCcee-eecccC---CCeeeEEeccCcCeec
Confidence            2       22367889999999 556899999888888887666     34566 566888   7999999999999999


Q ss_pred             EE--ecCcEEEEeCCCC-ceeeeecCCCCCC-CeEEEEE--ccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCC
Q 006126          524 SI--HEGQIDVYEAPTL-NHTSQLVPDKMDL-PITYATY--SCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQP  596 (660)
Q Consensus       524 ~~--~d~~i~iwd~~~~-~~~~~~~~~~~~~-~v~~~~~--s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~  596 (660)
                      +|  .+..|-.||++.. .++..+..  |.. .-..|-|  .|+|++|++|+.||.|++||+++ |..+..+..+     
T Consensus       267 sGaRk~dkIl~WDiR~~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-----  339 (406)
T KOG2919|consen  267 SGARKDDKILCWDIRYSRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-----  339 (406)
T ss_pred             ccccCCCeEEEEeehhccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-----
Confidence            95  6789999999864 34444433  222 2233444  59999999999999999999998 6645444322     


Q ss_pred             CCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          597 GTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       597 gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                         +..++  .|+++| --.++|+++..
T Consensus       340 ---sd~vN--gvslnP-~mpilatssGq  361 (406)
T KOG2919|consen  340 ---SDTVN--GVSLNP-IMPILATSSGQ  361 (406)
T ss_pred             ---ccccc--ceecCc-ccceeeeccCc
Confidence               55555  999999 57788887644

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.6e-20  Score=182.41  Aligned_cols=302  Identities=10%  Similarity=0.063  Sum_probs=203.5

Q ss_pred             EecCCCCEEEEEeCC---Cc--EEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-------CCCEEEEEECCCcEE
Q 006126          269 TSLPDADSAVCAKSL---EK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-------SGDFLVALTQTATHK  336 (660)
Q Consensus       269 ~~spdg~~l~s~~~d---g~--i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-------dg~~l~s~s~dg~i~  336 (660)
                      ..-|....|+++-..   ..  +.+|+-..   +....+..+-   -.....|++|..       .|+|+|.|+.|..|.
T Consensus       132 ~V~psDnlIl~ar~eddvs~LEvYVyn~~e---~nlYvHHD~i---lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie  205 (463)
T KOG0270|consen  132 QVKPSDNLILCARNEDDVSYLEVYVYNEEE---ENLYVHHDFI---LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE  205 (463)
T ss_pred             eeccCCcEEEEeeccCCceEEEEEEEcCCC---cceeEeccee---ccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence            445666666666543   22  44555432   2222221110   133456777743       367999999999999


Q ss_pred             EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEc
Q 006126          337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA  412 (660)
Q Consensus       337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~  412 (660)
                      |||+.-.....-.........-...+.+.  +.....+|+..|.+++|+   .+.||+|+ |.+|++||+.+|++..++.
T Consensus       206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k--~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~  283 (463)
T KOG0270|consen  206 IWDLDIVDAVLPCVTLGSKASKKKKKKGK--RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT  283 (463)
T ss_pred             Eeccccccccccceeechhhhhhhhhhcc--cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence            99986433211100000000000000000  111122799999999999   77899999 9999999999999999999


Q ss_pred             CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCe
Q 006126          413 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       413 ~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      .|...|.++.|+|..  .|++|+.|++|.+.|.+........-...+.|-.++|.|.. ..+++++.||+++-+|+|...
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~  363 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG  363 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC
Confidence            999999999999988  99999999999999998533332222256789999999854 457788899999999999843


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIY  566 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~  566 (660)
                          .++. ....|.   +.|.++++++.-..+++  +.|+.|++|++..-...........-+...|.++.|+-. +++
T Consensus       364 ----~~vw-t~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la  435 (463)
T KOG0270|consen  364 ----KPVW-TLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLA  435 (463)
T ss_pred             ----Ccee-EEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEE
Confidence                4555 456777   79999999997766655  599999999987544322221111123356667777654 577


Q ss_pred             EEecCCeEEEEECCCCeeEE
Q 006126          567 VSCKSGHVKVFDTSTLELRC  586 (660)
Q Consensus       567 sg~~dg~I~iwd~~~~~~~~  586 (660)
                      .|+..+.++|||+.++..+.
T Consensus       436 ~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  436 FGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ecCccceEEEeecccChhHH
Confidence            78888899999998876543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=5.3e-20  Score=178.85  Aligned_cols=233  Identities=13%  Similarity=0.117  Sum_probs=179.4

Q ss_pred             CCEEEEEe-CCcEEEEECCCCe---EE----------------E--EEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQ---TL----------------A--TFANPPPIATYFILLPQD--LFAFGFDDSSILVH  441 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~---~~----------------~--~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iw  441 (660)
                      |+++|.|+ |..|.|||+.--.   +.                +  ...+|...|.+++|+..-  .|++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            68999999 9999999984210   00                0  122678888889998877  99999999999999


Q ss_pred             eCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          442 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      |+.+|++...+..|...|.++.|+| ...+|++|+.|+++.+.|.+.... .....+  ..      +.|-.++|.|...
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk--~~------g~VEkv~w~~~se  342 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK--FD------GEVEKVAWDPHSE  342 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE--ec------cceEEEEecCCCc
Confidence            9999999999999999999999999 567899999999999999995221 112222  11      5789999999766


Q ss_pred             EEEE-E-ecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCeeEEEeecccccCC
Q 006126          521 HLLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP  596 (660)
Q Consensus       521 ~l~~-~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  596 (660)
                      ..+. + .||+|+-+|++.. +++.++..  |..+|.++++++. -.++++++.|+.|++|++.......+.....  . 
T Consensus       343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~--~-  417 (463)
T KOG0270|consen  343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF--K-  417 (463)
T ss_pred             eeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc--c-
Confidence            5544 4 8899999999975 77777764  7999999999865 4578899999999999987544322211100  0 


Q ss_pred             CCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                         -+.  ..|+++.|...-++|.||..+.++|||+.+..+
T Consensus       418 ---~~r--l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  418 ---LGR--LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ---ccc--eeecccCCCcceEEEecCccceEEEeecccChh
Confidence               011  237888886667899999999999999988754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.1e-20  Score=182.13  Aligned_cols=239  Identities=13%  Similarity=0.105  Sum_probs=189.5

Q ss_pred             CCeEEEEEe-CCEEEEEe---CCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126          377 DSISCFALR-GSHLFSAS---GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK  449 (660)
Q Consensus       377 ~~v~~v~~s-~~~l~s~~---dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~  449 (660)
                      ..+.+++|. .++|++++   |..+++|.-..  ++....-........|++..... ++++|+..+.|+|||++...+.
T Consensus        35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h  114 (673)
T KOG4378|consen   35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH  114 (673)
T ss_pred             CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence            348899999 66677666   67888886432  22222222222245577777777 9999999999999999977777


Q ss_pred             eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--Eec
Q 006126          450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHE  527 (660)
Q Consensus       450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d  527 (660)
                      +.+++|+..|+++.++-...+|++++..|.|.+..+.++...  .++.   .+..   ..|.-+.|+|..+.+++  +.+
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~f~---~~sg---qsvRll~ys~skr~lL~~asd~  186 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TTFT---IDSG---QSVRLLRYSPSKRFLLSIASDK  186 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--ccee---cCCC---CeEEEeecccccceeeEeeccC
Confidence            888999999999999999999999999999999999985421  1111   1111   45778999999998887  588


Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                      |.|.+||+....++..+.. .|..+...+||+|. ..+|++.+.|..|++||....+....+..         +++..  
T Consensus       187 G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---------~~Pls--  254 (673)
T KOG4378|consen  187 GAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---------SHPLS--  254 (673)
T ss_pred             CeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---------cCCcc--
Confidence            9999999988888777755 58999999999985 56788999999999999998887777764         45555  


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          607 VIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .|+|.| +|.+|+.|+..|.|..||+...+
T Consensus       255 tvaf~~-~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  255 TVAFSE-CGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             eeeecC-CceEEEeecCCceEEEEecccCC
Confidence            899999 89999999999999999998654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=6.1e-20  Score=174.68  Aligned_cols=244  Identities=18%  Similarity=0.219  Sum_probs=183.2

Q ss_pred             CCCCCeEEEEEe--CCE--EEEEe-CCcEEEEECCC----------------CeEEEEEcCCCCCeEEEEEcCCC--eEE
Q 006126          374 DPKDSISCFALR--GSH--LFSAS-GGKISIFSLET----------------FQTLATFANPPPIATYFILLPQD--LFA  430 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~--l~s~~-dg~I~iwd~~~----------------~~~~~~~~~~~~~v~~v~~sp~~--~l~  430 (660)
                      .|.+.++-+..+  ++-  .++-+ .|.|.||++..                .+++.++.+|...=+.++|||-.  .++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            577777777766  443  33334 59999999842                34667788888888999999954  899


Q ss_pred             EEeCCCeEEEEeCCCCcee---eEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126          431 FGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       431 s~~~d~~I~iwd~~~~~~~---~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                      +|.--+.|++|...+|.-.   ..+.+|+..|-.++|||. ...|++||.||+|+|||++.+...  ..+.  ...|.  
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~~~--~kAh~--  302 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AAVS--TKAHN--  302 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ceeE--eeccC--
Confidence            9988899999999887543   456679999999999995 457899999999999999997432  2222  25666  


Q ss_pred             CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---CceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCC
Q 006126          507 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       507 ~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~  581 (660)
                       +.|+-+.|+..-.+|++| .||+++|||++.   ++++..+.-  |..+|+++.|+|.. ..|++++.|..|.|||+..
T Consensus       303 -sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  303 -SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             -CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence             789999999998888885 889999999985   567777764  79999999999854 6788889999999999863


Q ss_pred             Cee-----------EEEeecc-cccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          582 LEL-----------RCQINLT-AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       582 ~~~-----------~~~~~~~-~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      ..-           +..+++. .|+-.|  ...+.  .+.||++.+.++++.+.|| +.||.
T Consensus       380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~K--evhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  380 EADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVK--EVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             cCChhhhccccccchhcCCceeEEEecc--hhHhh--hheeccCCCCeEEEecccc-eeEEE
Confidence            211           1111111 111112  33344  8999998888999999998 45554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.5e-18  Score=155.85  Aligned_cols=287  Identities=14%  Similarity=0.171  Sum_probs=202.8

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS  391 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s  391 (660)
                      ..|.+-+++|.+++|++|..+|.|.+..+.+-.....           .+.+...+-..  .+|.++|+.++|.+.+|++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~~iv~e--qahdgpiy~~~f~d~~Lls   77 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKLKIVPE--QAHDGPIYYLAFHDDFLLS   77 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------CCCCCcceeec--cccCCCeeeeeeehhheee
Confidence            3566778999999999999999999998764422000           11111111111  2799999999999999999


Q ss_pred             EeCCcEEEEECCCCeE------EEEEc-------CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126          392 ASGGKISIFSLETFQT------LATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN  457 (660)
Q Consensus       392 ~~dg~I~iwd~~~~~~------~~~~~-------~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~  457 (660)
                      |+||.|+-|..+....      .....       ..-..|+++...|.. -++.++.|+.++-||+++|+..+++++|+.
T Consensus        78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence            9999999997643211      11111       122457889999887 666677999999999999999999999999


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee---eeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 006126          458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE  534 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd  534 (660)
                      .|.++.--.....+++|+.||++|+||.++++.........   ....|..  .+|.+++.  +..++++|....+.+|.
T Consensus       158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g--~wigala~--~edWlvCGgGp~lslwh  233 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG--KWIGALAV--NEDWLVCGGGPKLSLWH  233 (325)
T ss_pred             eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC--ceeEEEec--cCceEEecCCCceeEEe
Confidence            99999885556688999999999999999976544322221   1112221  35555554  46699998888999999


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      +++.++..++..   ..++..+.|.  .+.++++++.+.|.-|.+. |.+...++.      +  ....+  ..+|+-.-
T Consensus       234 Lrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~------~--s~~c~--s~s~~~~p  297 (325)
T KOG0649|consen  234 LRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPV------E--STACY--SASWQTSP  297 (325)
T ss_pred             ccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccC------C--cccee--eecccCCc
Confidence            999999888865   6678888885  5578888888899999875 444433332      2  22233  55555421


Q ss_pred             CCEEEEEeCCCeEEEEe
Q 006126          615 PNRIALGLTNGRVHVIE  631 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~  631 (660)
                      -+++-.++....+.|+.
T Consensus       298 ~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  298 IKFISIAGFSNKLHILK  314 (325)
T ss_pred             eEEEEecccceeeeeee
Confidence            34566667777787764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=1.1e-18  Score=167.88  Aligned_cols=297  Identities=15%  Similarity=0.118  Sum_probs=210.7

Q ss_pred             CCCeEEEEEecCCC-EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC--ceeeecccCCCCCCeEEEEEe--
Q 006126          311 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK--LVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       311 ~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      ..+|..+.|.+++. .++||+.|..|++|.+..+..                ..+  .+...-...+|...|+++.|+  
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~----------------~~~~~~V~y~s~Ls~H~~aVN~vRf~p~   76 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP----------------GGGDMKVEYLSSLSRHTRAVNVVRFSPD   76 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCC----------------CCCceeEEEeecccCCcceeEEEEEcCC
Confidence            46899999999876 999999999999999765542                111  111111122799999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECC--------C--------CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126          386 GSHLFSAS-GGKISIFSLE--------T--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK  447 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~--------~--------~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~  447 (660)
                      |+.|++|+ +|.|.+|...        +        ....+.+.+|...|..++|+|++ .+++++.|..+++||+..|+
T Consensus        77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence            89999999 7999999765        2        23455677899999999999999 99999999999999999999


Q ss_pred             eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee--ec-----------cCC-CCCCeEEE
Q 006126          448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ--TG-----------LVP-ETTIVNHI  513 (660)
Q Consensus       448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~-----------~~~-~~~~v~~~  513 (660)
                      ....+..|...+..++|.|-++++++-+.|...+.+++.....+.......+.  .+           |+. .......+
T Consensus       157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence            99999999999999999999999999999998888777654333222111011  00           100 01234557


Q ss_pred             EEecCCcEEEE-E----ecCc-----EEEEeCCC-CceeeeecCCCCCCCeEEEEEcc------------------CCCE
Q 006126          514 QFHPDQIHLLS-I----HEGQ-----IDVYEAPT-LNHTSQLVPDKMDLPITYATYSC------------------DGKC  564 (660)
Q Consensus       514 ~~sp~~~~l~~-~----~d~~-----i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~------------------dg~~  564 (660)
                      +|+|||..+++ +    ..+.     .++++-.. .++...+..  ...+...+.|+|                  -+-.
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            89999999987 2    2233     35555332 223333332  144455555543                  1223


Q ss_pred             EEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          565 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       565 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ++.+ ..+.|+|||.++.++.......       |-..  ++.++|++ ||.+|+..|.||-..+-.+...+
T Consensus       315 faiA-t~~svyvydtq~~~P~~~v~ni-------hy~~--iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  315 FAIA-TKNSVYVYDTQTLEPLAVVDNI-------HYSA--ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEEe-ecceEEEeccccccceEEEeee-------eeee--ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence            4444 4567999999998888776532       1233  45999999 89999999999987776655443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=5.3e-19  Score=178.11  Aligned_cols=131  Identities=21%  Similarity=0.300  Sum_probs=104.2

Q ss_pred             CCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCce-------eeeecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEE
Q 006126          508 TIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH-------TSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVF  577 (660)
Q Consensus       508 ~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~~dg~I~iw  577 (660)
                      ..|+.+.|.| |...|++ +.||.|++|.+..+..       -..+.  .|...|+++.|+|- .+.|++++.|.+|++|
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt--~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT--IHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee--cccceEEEEEecchhhhHhhhhhccceeeee
Confidence            4577788888 5667777 6999999999875432       22333  36889999999984 5789999999999999


Q ss_pred             ECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce-eccCCCCccccccc
Q 006126          578 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV-EWGKLPFTDSREFS  651 (660)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~-~w~~~~~~~~~~~~  651 (660)
                      |+.+++....+.       || .+.+.  +++|+| ||+.+|+.+.||+|++|++.+++. .+....|.+.+..+
T Consensus       706 Dl~~~~~~~~l~-------gH-tdqIf--~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgAR  769 (1012)
T KOG1445|consen  706 DLANAKLYSRLV-------GH-TDQIF--GIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGAR  769 (1012)
T ss_pred             ehhhhhhhheec-------cC-cCcee--EEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCccee
Confidence            999999888877       66 44455  999999 899999999999999999998865 66666676655443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=2.8e-19  Score=180.87  Aligned_cols=279  Identities=13%  Similarity=0.114  Sum_probs=195.6

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCC-cceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      ..|+.+..||.|.++|....... .+.+-...  ..|.+.|..+.|-|....|++++.|.++++||++.....       
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~--~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------  135 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKP--LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------  135 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhccc--ccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------
Confidence            47889999999999998753222 11111112  239999999999996678999999999999998877641       


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe-----------------------
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-----------------------  406 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~-----------------------  406 (660)
                               .+.+   .+  ||...|.+++|.   ...|++|+ ||.|.|||+.-..                       
T Consensus       136 ---------G~~~---~~--GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  136 ---------GGRL---NL--GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             ---------ccee---ec--ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence                     1111   11  899999999999   56788898 9999999985321                       


Q ss_pred             ----EEEEEcCCCCCeEE---EEEcCCC-eEEEEeC-CCeEEEEeCCCCceeeE--------eecc---CCCeEEEEEeC
Q 006126          407 ----TLATFANPPPIATY---FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK--------LKGH---QNRITCLAYSL  466 (660)
Q Consensus       407 ----~~~~~~~~~~~v~~---v~~sp~~-~l~s~~~-d~~I~iwd~~~~~~~~~--------~~~~---~~~v~~l~~sp  466 (660)
                          .++....+...|.+   +.+..|. .|++++. |+.|+|||+++......        +..|   ...+.++....
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence                01111233444544   5566677 8888887 99999999987644322        2223   34567777888


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeec
Q 006126          467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~  545 (660)
                      .|.+|.+.+.|+.|++|++.+-..   .++. ...++... ..-..-..+||+.++++ +.|...++|.+.+.+.--.+.
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~---sP~~-~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l  356 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSI---SPVA-EFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL  356 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCc---Cchh-hccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence            889998888899999999987331   2222 22333210 11223456899999999 599999999998766543333


Q ss_pred             CCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCC
Q 006126          546 PDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~  582 (660)
                      . +|...|++++|.|.. .-++++++|..++||++..+
T Consensus       357 ~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  357 L-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             h-CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            3 378999999998643 34666699999999999765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=6.9e-19  Score=169.33  Aligned_cols=292  Identities=16%  Similarity=0.154  Sum_probs=205.4

Q ss_pred             EecCCCC-EEEEEeCCCcEEEEeccCcCCCc---cee-eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126          269 TSLPDAD-SAVCAKSLEKSVNLKLQLINEPS---ECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       269 ~~spdg~-~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      .|.+++. .+++|+.|..|+||.+......+   .+. .-.|  ..|...|+++.|+|+|+.||+|+.+|.+.+|.....
T Consensus        20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L--s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~   97 (434)
T KOG1009|consen   20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL--SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV   97 (434)
T ss_pred             EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc--cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence            6666666 99999999999999987543333   111 1123  339999999999999999999999999999987632


Q ss_pred             ceeeeeeccceeEEEecCCC-----C--ceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC
Q 006126          344 KQSLEEENVNMESQLYQPSS-----K--LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN  413 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~  413 (660)
                      ..             .+..+     .  ..+.. ...+|...|+.++|+  +.++++++ |..+++||+..|.....+..
T Consensus        98 ~~-------------~~~d~e~~~~ke~w~v~k-~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d  163 (434)
T KOG1009|consen   98 RI-------------FDADTEADLNKEKWVVKK-VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD  163 (434)
T ss_pred             CC-------------ccccchhhhCccceEEEE-EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence            11             11111     1  11111 122799999999999  88999999 99999999999999999999


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee--------c-----------c----CCCeEEEEEeCCCC
Q 006126          414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------G-----------H----QNRITCLAYSLSLN  469 (660)
Q Consensus       414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~--------~-----------~----~~~v~~l~~sp~~~  469 (660)
                      |..-+..++|.|-+ ++++-+.|...+.+.+...+.++...        +           |    ......++|+|+|.
T Consensus       164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            99999999999999 99999988877777665433322111        0           1    12334578899999


Q ss_pred             EEEEEeC----CCc-----EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec------------------CCcEE
Q 006126          470 VLVSSGA----DAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------------------DQIHL  522 (660)
Q Consensus       470 ~l~s~s~----dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------------------~~~~l  522 (660)
                      ++++.+.    .+.     .++|+-..   . ..+...++ +..   .....+.|+|                  -+-.+
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~---l-~rP~~~lp-~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf  315 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKD---L-KRPAARLP-SPK---KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF  315 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeecccc---c-cCceeecC-CCC---cceEEEEeeeeEEEeccccccccccccccceEE
Confidence            9987542    222     23343221   1 11111011 111   2344444444                  22334


Q ss_pred             EEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeE
Q 006126          523 LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR  585 (660)
Q Consensus       523 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~  585 (660)
                      +++..+.|++||.++..++..... -|-..++.++|++||.+++..+.||...+-.++..++-
T Consensus       316 aiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  316 AIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             EEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            457888999999998888776654 47899999999999999999999999888777766544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.7e-20  Score=200.62  Aligned_cols=243  Identities=17%  Similarity=0.248  Sum_probs=186.6

Q ss_pred             CCCCeEEEEEe--CC----EEEEEe-CCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEE
Q 006126          375 PKDSISCFALR--GS----HLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSIL  439 (660)
Q Consensus       375 h~~~v~~v~~s--~~----~l~s~~-dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~  439 (660)
                      -....+.++|.  +.    .|+.|. ||.|.+||...-      ..+.+...|.+.|..+.|++..  ++++|+.||.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            34567889998  44    366666 899999998652      2455667899999999999987  999999999999


Q ss_pred             EEeCCCCceeeEee--ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126          440 VHCPCTKKTKAKLK--GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  516 (660)
Q Consensus       440 iwd~~~~~~~~~~~--~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  516 (660)
                      |||+..-+.-..+.  ...+.|.+++|+. ....|++++.+|++.|||++..+.+    +. + ..+.+ ...+..++|+
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi----i~-l-s~~~~-~~~~S~l~Wh  215 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI----IK-L-SDTPG-RMHCSVLAWH  215 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc----cc-c-ccCCC-ccceeeeeeC
Confidence            99998744333331  1457899999987 4567899999999999999984322    22 1 11110 0357889999


Q ss_pred             cCCcE-EEE-E-ec--CcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          517 PDQIH-LLS-I-HE--GQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       517 p~~~~-l~~-~-~d--~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      |+... +++ + .|  -.|.+||++.. .+++.+.  .|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.
T Consensus       216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             CCCceeeeeecCCCCCceeEeecccccCCchhhhc--ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            98643 333 3 33  37999999854 4556664  479999999999866 899999999999999999999998886


Q ss_pred             cccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          590 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       590 ~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ..        ++  ++..+.|+|.+...++.++-||.|-|+.+..+.
T Consensus       294 ~~--------~n--W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQ--------GN--WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CC--------Cc--ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            31        33  455999999888899999999999999998764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=7.9e-20  Score=197.03  Aligned_cols=287  Identities=16%  Similarity=0.163  Sum_probs=211.5

Q ss_pred             eEecCCCC-EEEEEe----------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCE----EEEEECC
Q 006126          268 STSLPDAD-SAVCAK----------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----LVALTQT  332 (660)
Q Consensus       268 ~~~spdg~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~----l~s~s~d  332 (660)
                      .+|||++. ++++|.          .+.++-||.+........+...  ....-..+-..++|.+.|..    ||.|..|
T Consensus        12 ~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   12 FAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--GSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             EEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc--ccccccccceeeeecccCCCccceeeccccC
Confidence            38888886 555553          3445666665432222111110  01113567889999998876    7888889


Q ss_pred             CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEE
Q 006126          333 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL  408 (660)
Q Consensus       333 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~  408 (660)
                      |.|.+|+......               ......+...  ..|.+.|..+.|+   ++.||+|+ ||.|.|||+...+.-
T Consensus        90 G~I~ly~p~~~~~---------------~~~~~~la~~--~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP  152 (1049)
T KOG0307|consen   90 GNIVLYDPASIIA---------------NASEEVLATK--SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP  152 (1049)
T ss_pred             CceEEecchhhcc---------------CcchHHHhhh--cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence            9999998754210               0011122211  1699999999999   77999999 899999999874433


Q ss_pred             EEE--cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCC--CeEEEEEeCCC-CEEEEEeCCC---
Q 006126          409 ATF--ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSL-NVLVSSGADA---  478 (660)
Q Consensus       409 ~~~--~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~-~~l~s~s~dg---  478 (660)
                      .+.  ......|.+++|+..-  .|++++.+|.+.|||++..+.+-.+..+.+  .+..++|+|++ ..+++++.|.   
T Consensus       153 ~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P  232 (1049)
T KOG0307|consen  153 FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP  232 (1049)
T ss_pred             CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence            333  1356789999999877  899999999999999998888777765544  46789999976 4566666654   


Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEE
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA  556 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  556 (660)
                      .|.+||+|..    ..+++ +..+|.   ..|.++.|++.+ .++++ +.|+.|.+|+.++++.+..+..  ....+..+
T Consensus       233 viqlWDlR~a----ssP~k-~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv  302 (1049)
T KOG0307|consen  233 VIQLWDLRFA----SSPLK-ILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDV  302 (1049)
T ss_pred             eeEeeccccc----CCchh-hhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeee
Confidence            5999999873    35556 568898   689999999977 66666 5999999999999999998865  37889999


Q ss_pred             EEccCCC-EEEEEecCCeEEEEECCCCe
Q 006126          557 TYSCDGK-CIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       557 ~~s~dg~-~l~sg~~dg~I~iwd~~~~~  583 (660)
                      .|+|... .+++++-||.|-||.+..+.
T Consensus       303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  303 QWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eecCCCcchhhhheeccceeeeeeecCC
Confidence            9998665 88889999999999987654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=3.2e-19  Score=169.80  Aligned_cols=207  Identities=12%  Similarity=0.114  Sum_probs=161.3

Q ss_pred             CCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCC----------------CceeeEeeccCCCeEEEEEeCCC-CEEE
Q 006126          413 NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQNRITCLAYSLSL-NVLV  472 (660)
Q Consensus       413 ~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~----------------~~~~~~~~~~~~~v~~l~~sp~~-~~l~  472 (660)
                      +|.+.++.+..++-+   +.++-+..|.|.|||+..                .+++.++.+|.+.=+.+.|||-. ..|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            555666666665554   677778889999999752                24677888999999999999932 2477


Q ss_pred             EEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCC
Q 006126          473 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMD  550 (660)
Q Consensus       473 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~  550 (660)
                      +|..-+.|++|...++.-.   .-+.-+.+|+   ..|-.++|||...-+++  +.|++|+|||++.+.....+....|.
T Consensus       229 sGDc~~~I~lw~~~~g~W~---vd~~Pf~gH~---~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~  302 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWK---VDQRPFTGHT---KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN  302 (440)
T ss_pred             cCccccceEeeeeccCcee---ecCccccccc---cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence            8888889999999885421   1111345687   68999999997666554  59999999999988443333335689


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEECCC---CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeE
Q 006126          551 LPITYATYSCDGKCIYVSCKSGHVKVFDTST---LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV  627 (660)
Q Consensus       551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v  627 (660)
                      ..|+-+.|+.+..+||+|+.||+++|||+++   ++++..++.|        ..+|+  ++.|+|.+...|+++|.|..|
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--------k~pIt--sieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--------KAPIT--SIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--------cCCee--EEEeccccCceEEeccCCCcE
Confidence            9999999999888999999999999999975   5666777644        66666  999999888899999999999


Q ss_pred             EEEeCCCC
Q 006126          628 HVIEPLES  635 (660)
Q Consensus       628 ~iw~~~~~  635 (660)
                      .|||+.-.
T Consensus       373 tiWDlsvE  380 (440)
T KOG0302|consen  373 TIWDLSVE  380 (440)
T ss_pred             EEEEeecc
Confidence            99998643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=1.4e-18  Score=175.94  Aligned_cols=268  Identities=13%  Similarity=0.168  Sum_probs=204.5

Q ss_pred             CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126          264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      |...+.|-|||..|+.+..+ .+.+||..+   .+.++.  |.  ||.+.|.|++|+.||+.+|+|+.|..|.+|+-+-.
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---G~llqt--LK--gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---GTLLQP--LK--GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCC---cccccc--cc--cccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            44456999999988887654 588999986   344444  44  49999999999999999999999999999975443


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF  421 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v  421 (660)
                      ..                    +.     ..|.+.|.|+.|+  ...|++++=...-+|........+ . .....+.++
T Consensus        86 G~--------------------Lk-----YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~C  138 (1081)
T KOG1538|consen   86 GI--------------------LK-----YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICC  138 (1081)
T ss_pred             ce--------------------ee-----eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEe
Confidence            32                    11     1699999999999  888999996667788876432221 1 224567899


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee---ccCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEcCCCeeee
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~-----~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      +|..|| +++.|-.+|+|.+-+- +|+....+.   |.+.+|++++|+|..     ..+++.....++.++.+.......
T Consensus       139 sWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk  217 (1081)
T KOG1538|consen  139 SWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK  217 (1081)
T ss_pred             eecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence            999999 9999999999999874 344433333   477899999999953     467788888888888876522111


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                      .+.+.          -...|+.+.++|.+++. |.|+.+++|-- .|-.+.++..  ....|+.++..|++++++.|+.|
T Consensus       218 ~r~L~----------FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqD  284 (1081)
T KOG1538|consen  218 DRALN----------FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQD  284 (1081)
T ss_pred             cccCC----------CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccc--cceeEEEEEEccCCceEEEEEcc
Confidence            22222          34668999999999999 59999999974 5655555532  47899999999999999999999


Q ss_pred             CeEEEEECC
Q 006126          572 GHVKVFDTS  580 (660)
Q Consensus       572 g~I~iwd~~  580 (660)
                      |+|..|++-
T Consensus       285 GTiACyNl~  293 (1081)
T KOG1538|consen  285 GTIACYNLI  293 (1081)
T ss_pred             CeeehhhhH
Confidence            999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=3.2e-18  Score=159.95  Aligned_cols=272  Identities=16%  Similarity=0.159  Sum_probs=199.5

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcC---C-C-----cceeeeecCCCCCCCCeEEEEEe-------cCCCEEEEEECC
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLIN---E-P-----SECRTLLLPDNSFGGRVVRLIYS-------HSGDFLVALTQT  332 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~---~-~-----~~~~~~~l~~~~h~~~V~~~~~s-------pdg~~l~s~s~d  332 (660)
                      .|||||..|++-+.|..+++|++.-.-   . .     .....+.++   ....|...+|-       |+..++++.+.+
T Consensus        56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---EGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---cCCEEEEEEeeeccccCCCccceeeecccc
Confidence            899999999999999999999885210   0 0     011111111   25567777775       677889999999


Q ss_pred             CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC---CeEEEEEe--CCEEEEEeCCcEEEEEC-CCCe
Q 006126          333 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--GSHLFSASGGKISIFSL-ETFQ  406 (660)
Q Consensus       333 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s--~~~l~s~~dg~I~iwd~-~~~~  406 (660)
                      .-|++||.-+++.+.+       -+.||              |..   ...+++|+  |.+|++|....|++||+ +.|.
T Consensus       133 ~PIh~wdaftG~lraS-------y~~yd--------------h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr  191 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRAS-------YRAYD--------------HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR  191 (406)
T ss_pred             Cceeeeeccccccccc-------hhhhh--------------hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence            9999998877765222       11222              332   34589999  89999999999999999 4454


Q ss_pred             EEEEE---c----CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-
Q 006126          407 TLATF---A----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-  476 (660)
Q Consensus       407 ~~~~~---~----~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-  476 (660)
                      ....+   .    +..+-+.|++|+|..  .++.|+...++-||.-..+.++..+-+|.+.|+.+.|.++|+.|.+|+. 
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence            32221   1    235567899999987  8999999999999988888999999999999999999999999999885 


Q ss_pred             CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeE
Q 006126          477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPIT  554 (660)
Q Consensus       477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~  554 (660)
                      |..|-.||++...    .++. ....|......-.-....|++++|++| .||.|++||+++ +..+..+..  +...++
T Consensus       272 ~dkIl~WDiR~~~----~pv~-~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--~sd~vN  344 (406)
T KOG2919|consen  272 DDKILCWDIRYSR----DPVY-ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--YSDTVN  344 (406)
T ss_pred             CCeEEEEeehhcc----chhh-hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--cccccc
Confidence            7789999999732    2333 233333100122234557899999996 999999999988 665666543  588899


Q ss_pred             EEEEccCCCEEEEEecC
Q 006126          555 YATYSCDGKCIYVSCKS  571 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~d  571 (660)
                      .++++|-=.++++++..
T Consensus       345 gvslnP~mpilatssGq  361 (406)
T KOG2919|consen  345 GVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ceecCcccceeeeccCc
Confidence            99999997788877654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=1.4e-18  Score=169.60  Aligned_cols=250  Identities=14%  Similarity=0.147  Sum_probs=190.4

Q ss_pred             CCCCCeEEEEEe---C-CEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEe
Q 006126          374 DPKDSISCFALR---G-SHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC  442 (660)
Q Consensus       374 ~h~~~v~~v~~s---~-~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd  442 (660)
                      -+.++|++++|+   . +.+++|. .|+|-+||+.+.    .-+..+..|..+|.++.|+|.+  .+++.+.||+|++-|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            378899999999   4 4666666 799999999532    3355677999999999999998  999999999999999


Q ss_pred             CCCCceeeEeec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          443 PCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       443 ~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      ++.+..-..+..  ....+.++.|+.+...++.+..=|...+||++++...    .. ...-|.   ..|.+++++|-..
T Consensus       264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----~~-~~~lh~---kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----YE-NLRLHK---KKITSVALNPVCP  335 (498)
T ss_pred             ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----ch-hhhhhh---cccceeecCCCCc
Confidence            987754333332  4556778889888888888888889999999985421    11 223344   4799999999776


Q ss_pred             EEE-E-EecCcEEEEeCCCCceeee--ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC----CCeeEEEeeccc
Q 006126          521 HLL-S-IHEGQIDVYEAPTLNHTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS----TLELRCQINLTA  592 (660)
Q Consensus       521 ~l~-~-~~d~~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~----~~~~~~~~~~~~  592 (660)
                      +++ + |.|++.+|||++.......  +..-.|...|.++.|||++-.|++.+.|..|+|||..    .-.+...+.-. 
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn-  414 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN-  414 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc-
Confidence            655 4 5999999999986443332  3333589999999999998889999999999999984    33444444311 


Q ss_pred             ccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          593 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       593 ~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ..    +..........|.| +..++++|-.-..|-|+|...++-
T Consensus       415 ~~----t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~  454 (498)
T KOG4328|consen  415 NR----TGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQM  454 (498)
T ss_pred             Cc----ccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEE
Confidence            10    12334455789999 889999999999999999998873

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=6.1e-16  Score=164.40  Aligned_cols=324  Identities=22%  Similarity=0.310  Sum_probs=241.7

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE-ecCCC-EEEEEEC-CCcEEEEeccC-C
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGD-FLVALTQ-TATHKLWKWQS-N  343 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~-spdg~-~l~s~s~-dg~i~vw~~~~-~  343 (660)
                      ..+.+.+..++.++.|+.+.+|+.....  .....+  ... +...+..+.+ ++++. +++..+. |+.+.+|+... .
T Consensus        71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  145 (466)
T COG2319          71 IAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSL--EGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG  145 (466)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEE--ecc-CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence            4888999999999999999999998521  023332  210 2236777777 88887 5555455 89999998765 2


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIAT  419 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~  419 (660)
                      ..                     .....  .|...|..++|+  +..+++++  ++.+++|++..+..+..+..|...+.
T Consensus       146 ~~---------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  202 (466)
T COG2319         146 KL---------------------IRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS  202 (466)
T ss_pred             eE---------------------EEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence            11                     11111  689999999999  66777776  89999999999899999999999999


Q ss_pred             EEEEcCCC-eEE-EEeCCCeEEEEeCCCCceee-EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126          420 YFILLPQD-LFA-FGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       420 ~v~~sp~~-~l~-s~~~d~~I~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      +++|+|++ .++ +++.|+.|++||...+..+. .+.+|.... ...|+|++..+++++.|+.+++||++....    .+
T Consensus       203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~  277 (466)
T COG2319         203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LL  277 (466)
T ss_pred             EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EE
Confidence            99999998 444 44999999999998888887 688888775 448999998999999999999999987442    22


Q ss_pred             eeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeE
Q 006126          497 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHV  574 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I  574 (660)
                      ... .+|.   ..+.++.|+|++..+++ +.|+.+.+||..+...........|...+..+.|.+++..++.+ ..|+.+
T Consensus       278 ~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         278 RTL-SGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             EEE-ecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence            212 4565   68999999998888888 56788999999887766655422356678999994343566665 678999


Q ss_pred             EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE-EeCCCeEEEEeCCCCceeccC
Q 006126          575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL-GLTNGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s-~s~Dg~v~iw~~~~~~~~w~~  641 (660)
                      ++|+............         ...  +..+.+++ + ..+.. +..++.+.+|+..........
T Consensus       354 ~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (466)
T COG2319         354 RLWDLRTGKPLKTLEG---------HSN--VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNL  408 (466)
T ss_pred             EeeecCCCceeEEecC---------Cce--EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeec
Confidence            9999998872222211         111  34888988 7 55555 889999999999988764433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=3.3e-18  Score=173.33  Aligned_cols=272  Identities=14%  Similarity=0.186  Sum_probs=200.7

Q ss_pred             CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126          313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF  390 (660)
Q Consensus       313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~  390 (660)
                      .|..++|-|||..|+.+..+ .+                     .+||++.|..++.+.  +|.+.|+|++|+  |+.++
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rl---------------------liyD~ndG~llqtLK--gHKDtVycVAys~dGkrFA   69 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RL---------------------LVYDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFA   69 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EE---------------------EEEeCCCcccccccc--cccceEEEEEEccCCceec
Confidence            89999999999887776654 33                     356667777666554  899999999999  99999


Q ss_pred             EEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          391 SAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       391 s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      +|+ |..|.+|+.+-.   ..++ .|...|.|+.|+|-. .+++++-. ..-+|....... .+.+ ...++.+++|..|
T Consensus        70 SG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnD  143 (1081)
T KOG1538|consen   70 SGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTND  143 (1081)
T ss_pred             cCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCC
Confidence            999 999999986532   2233 789999999999999 88888744 456787654332 2222 3457889999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-----cEEEE-EecCcEEEEeCCCCcee
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLS-IHEGQIDVYEAPTLNHT  541 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~~-~~d~~i~iwd~~~~~~~  541 (660)
                      |.+++.|-.||+|.+-+-...+   ...+. .+.|..   ++|.+++|+|..     ..+++ -...++.++.+ +|+.+
T Consensus       144 GqylalG~~nGTIsiRNk~gEe---k~~I~-Rpgg~N---spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~I  215 (1081)
T KOG1538|consen  144 GQYLALGMFNGTISIRNKNGEE---KVKIE-RPGGSN---SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQI  215 (1081)
T ss_pred             CcEEEEeccCceEEeecCCCCc---ceEEe-CCCCCC---CCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceee
Confidence            9999999999999998654422   12233 233444   789999999963     23444 35567777777 45554


Q ss_pred             eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          542 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ..-..  -.....|+.+.++|.+++.|+.|+.+.+|-.+ |-.+.++.        .-++.+|  .|+.+| ++++++.|
T Consensus       216 gk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg--------~~D~WIW--tV~~~P-NsQ~v~~G  281 (1081)
T KOG1538|consen  216 GKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVG--------EQDSWIW--TVQAKP-NSQYVVVG  281 (1081)
T ss_pred             ccccc--CCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeecc--------ccceeEE--EEEEcc-CCceEEEE
Confidence            32211  14456688999999999999999999999654 54455442        2256666  999999 89999999


Q ss_pred             eCCCeEEEEeCCCCc
Q 006126          622 LTNGRVHVIEPLESE  636 (660)
Q Consensus       622 s~Dg~v~iw~~~~~~  636 (660)
                      +.||+|.-|++....
T Consensus       282 CqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  282 CQDGTIACYNLIFST  296 (1081)
T ss_pred             EccCeeehhhhHHhH
Confidence            999999999986543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5e-18  Score=160.02  Aligned_cols=277  Identities=12%  Similarity=0.119  Sum_probs=185.5

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS  398 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~  398 (660)
                      ..+|++-.+|.|++||..+++.                     +....  ++...+..+.|.    .+.+.+|+ ||+|+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~---------------------l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr   97 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQL---------------------LEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVR   97 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhh---------------------hheec--CCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence            4578888899999988776543                     11111  677778888887    46778888 99999


Q ss_pred             EEECCCCeEEEEE--cCCC-CCeEEEEEcCCC-eEEEEe----CCCeEEEEeCCCCce-eeEe-eccCCCeEEEEEeC-C
Q 006126          399 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKT-KAKL-KGHQNRITCLAYSL-S  467 (660)
Q Consensus       399 iwd~~~~~~~~~~--~~~~-~~v~~v~~sp~~-~l~s~~----~d~~I~iwd~~~~~~-~~~~-~~~~~~v~~l~~sp-~  467 (660)
                      +||+++......+  ..+. .+..|++.+..+ .+++|+    .|-.|.+||++..+. +..+ ..|...|+++.|+| +
T Consensus        98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~  177 (376)
T KOG1188|consen   98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD  177 (376)
T ss_pred             EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence            9999886554433  3444 456777777666 777775    356899999998766 5555 55999999999999 5


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--cEEEEEecCcEEEEeCCCCceeeeec
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~d~~i~iwd~~~~~~~~~~~  545 (660)
                      .+.|++||.||.|.+||++..... ...++ +. .+.   +.|.++.|+.++  +....+...+..+|+++.+.+...+.
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~Ee-DaL~~-vi-N~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNEE-DALLH-VI-NHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcch-hhHHH-hh-ccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            678999999999999999874211 11222 11 222   579999999888  54444899999999999888665543


Q ss_pred             CCCC----------CCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          546 PDKM----------DLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       546 ~~~~----------~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      ...-          ...+...-...++..++.++. -|...++-+............ ..+.|++..-|+  ++.|.. .
T Consensus       252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~-a~l~g~~~eiVR--~i~~~~-~  327 (376)
T KOG1188|consen  252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP-AILQGGHEEIVR--DILFDV-K  327 (376)
T ss_pred             CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCcc-ccccCCcHHHHH--HHhhhc-c
Confidence            3210          112222222234455555555 466666544422212222211 122254455566  777776 6


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q 006126          615 PNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +.++.|||.||.+.+|...
T Consensus       328 ~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  328 NDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cceeeccCCCceEEEEecC
Confidence            8899999999999999963

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=1.6e-15  Score=161.17  Aligned_cols=312  Identities=22%  Similarity=0.293  Sum_probs=232.0

Q ss_pred             cCCCC-EEEEEeC-CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCceee
Q 006126          271 LPDAD-SAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL  347 (660)
Q Consensus       271 spdg~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~  347 (660)
                      ++++. .++..+. |+.+.+|+...   ...... .+.  +|...|..++|+|++.++++++. |+.+++|+......  
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~-~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  190 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLST---PGKLIR-TLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--  190 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecC---CCeEEE-EEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--
Confidence            78887 5555455 89999999973   012221 232  38999999999999998898886 99999998765322  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEE-EEcCCCCCeEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFI  422 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~  422 (660)
                                         +....  +|...|.+++|+  +. .+++++ |+.|++||...+.... .+..|.... ...
T Consensus       191 -------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~  248 (466)
T COG2319         191 -------------------LSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS  248 (466)
T ss_pred             -------------------EEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence                               11111  588999999999  55 455546 8999999999888888 688887775 448


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      |+|++ .+++++.|+.+++|++..... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+........    .
T Consensus       249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~  324 (466)
T COG2319         249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----L  324 (466)
T ss_pred             ECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----e
Confidence            99999 888999999999999987664 44446788999999999988898889999999999988854322111    1


Q ss_pred             eccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEE
Q 006126          501 TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVF  577 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-g~~dg~I~iw  577 (660)
                      ..|.   ..+..+.|.+++..++.+  .|+.+.+|+............   ...+..+.+++ ...++. +..++.+.+|
T Consensus       325 ~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  397 (466)
T COG2319         325 KGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLW  397 (466)
T ss_pred             cccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEE
Confidence            3454   458889884332455553  778899999987773333321   22288899988 544444 6888999999


Q ss_pred             ECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          578 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +.............        ...  +....+.+ ++..+++++.++++++|+...
T Consensus       398 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         398 DLSTGSLLRNLDGH--------TSR--VTSLDFSP-DGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             ecccCeeeeeccCC--------CCc--EEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence            99998877665421        023  34788888 788999999999999999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.6e-16  Score=167.37  Aligned_cols=350  Identities=15%  Similarity=0.138  Sum_probs=241.6

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC---CEEEEEECCCcEEEEeccCCce
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg---~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .||+|+++++.... ..|+||...    ++.+.. .|++  |..++..+.+.|..   .++.+++.||.|++||+..+..
T Consensus        23 vfSnD~k~l~~~~~-~~V~VyS~~----Tg~~i~-~l~~--~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   23 VFSNDAKFLFLCTG-NFVKVYSTA----TGECIT-SLED--HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL   94 (792)
T ss_pred             ccccCCcEEEEeeC-CEEEEEecc----hHhhhh-hccc--ccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence            89999998886654 679999998    477766 3655  89999999998855   4778999999999999877654


Q ss_pred             eee------eec--------------------------------------------------------------------
Q 006126          346 SLE------EEN--------------------------------------------------------------------  351 (660)
Q Consensus       346 ~~~------~~~--------------------------------------------------------------------  351 (660)
                      ...      ...                                                                    
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence            321      000                                                                    


Q ss_pred             ----cceeEEEecCCCCc--eeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC----CeEEEEEcCCCCCe
Q 006126          352 ----VNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIA  418 (660)
Q Consensus       352 ----~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~----~~~~~~~~~~~~~v  418 (660)
                          ....+.+|....+.  .........|.-.+++++++  +++++++. ||.|.+|.--.    ....+.+.-|...|
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence                00001344433321  11111112466778899999  88999998 99999996432    12344566788999


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  497 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  497 (660)
                      .+++|+++| +|++|+..+.+.+|.+.+++ .+-+..-.++|..+.++||+...+....|+.|.+....+-+..  ..+.
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--~tIs  331 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--STIS  331 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh--hhcc
Confidence            999999999 99999999999999999987 4455567889999999999999999999999999877552211  1111


Q ss_pred             eeeec----cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCC---------CCCCeEEEEEccCCC
Q 006126          498 SFQTG----LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------MDLPITYATYSCDGK  563 (660)
Q Consensus       498 ~~~~~----~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~dg~  563 (660)
                      .+...    .....+-.+.++++|.-+.++. +..+.|.+||+.+.+.+..+..-.         +...+++++.+..|.
T Consensus       332 gi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs  411 (792)
T KOG1963|consen  332 GIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS  411 (792)
T ss_pred             CccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce
Confidence            01000    0000145677899995555554 799999999998877665543211         234577888888899


Q ss_pred             EEEEEec--------C--CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          564 CIYVSCK--------S--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       564 ~l~sg~~--------d--g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +++|+-.        |  -.+++|.......-..+......|.|  .. . +..+..+|.....++++|.||.++||-+.
T Consensus       412 ~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~--~~-~-vat~~~~~~rs~~~vta~~dg~~KiW~~~  487 (792)
T KOG1963|consen  412 WMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG--NA-F-VATIFLNPTRSVRCVTASVDGDFKIWVFT  487 (792)
T ss_pred             EEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC--ce-e-EEEEEecCcccceeEEeccCCeEEEEEEe
Confidence            9998642        3  35788987766555555544334333  32 2 22344455344489999999999999993

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.1e-16  Score=144.14  Aligned_cols=276  Identities=17%  Similarity=0.252  Sum_probs=190.7

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCc-----CCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLI-----NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      +++|.+++++.|+.+|+|.+..+...     ..+++...+  +..+|.++|..++|..  .+|++|+ ||.|+-|.+...
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv--~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~   91 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIV--PEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEE   91 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCccee--eccccCCCeeeeeeeh--hheeecc-CceEEEeeehhh
Confidence            88999999999999999999988632     223344433  3355999999999983  4566665 599999988654


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATY  420 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~  420 (660)
                      ....      ..-.+|.........  .  -.-..|+++...   +..|.+|+|+.++-||+++|+..+++++|.+-+.+
T Consensus        92 ~es~------~~K~lwe~~~P~~~~--~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~  161 (325)
T KOG0649|consen   92 EESL------ATKRLWEVKIPMQVD--A--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS  161 (325)
T ss_pred             hhhc------cchhhhhhcCccccC--c--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence            3310      011345443322110  0  122346676666   66777777999999999999999999999999999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC----------CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126          421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ----------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~----------~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      +.-.... .+++|+.||++++||.+++++++.+....          ..|-+++.  +..+|++|+ ...+.+|.+++.+
T Consensus       162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence            9885555 99999999999999999999988774321          23445444  566887665 5688999999977


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC-CCEEEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYV  567 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~s  567 (660)
                      .....++.          +.+..+.|..|  .+++ |..+.|.-|.+ +|.........  ....++..|+.. -++|-.
T Consensus       239 ~t~vfpip----------a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~  303 (325)
T KOG0649|consen  239 STCVFPIP----------ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQANIPVE--STACYSASWQTSPIKFISI  303 (325)
T ss_pred             ceEEEecc----------cceeEeeeecc--eEEEeccccceeeeee-ccEEEEeccCC--ccceeeecccCCceEEEEe
Confidence            66555555          67888888754  4444 56778988987 45544444332  344555666533 245555


Q ss_pred             EecCCeEEEE
Q 006126          568 SCKSGHVKVF  577 (660)
Q Consensus       568 g~~dg~I~iw  577 (660)
                      ++..+.+.|+
T Consensus       304 ag~s~~~~i~  313 (325)
T KOG0649|consen  304 AGFSNKLHIL  313 (325)
T ss_pred             cccceeeeee
Confidence            5556666665

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=7.9e-18  Score=157.77  Aligned_cols=258  Identities=14%  Similarity=0.136  Sum_probs=186.3

Q ss_pred             ccCCCCCCeEEEEEe-------CCEEEEEeCCcEEEEECCCCe---EEEEEc--CCCCCeEEEEEcCC---C--eEEEEe
Q 006126          371 IAADPKDSISCFALR-------GSHLFSASGGKISIFSLETFQ---TLATFA--NPPPIATYFILLPQ---D--LFAFGF  433 (660)
Q Consensus       371 ~~~~h~~~v~~v~~s-------~~~l~s~~dg~I~iwd~~~~~---~~~~~~--~~~~~v~~v~~sp~---~--~l~s~~  433 (660)
                      +.++|+.++..++|+       ...+++++...+.+|......   .++.+.  .++.....++|+-+   +  .++.|+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            334799999999998       345777778899999876433   333332  35666777888643   3  899999


Q ss_pred             CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE
Q 006126          434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH  512 (660)
Q Consensus       434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  512 (660)
                      .-|.|+|.|+.++++...+.+|...|+.+.++|+. ++++++|.|.+|++|++++..++..  +. -.+||.   ..|.+
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V--fG-G~egHr---deVLS  186 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV--FG-GVEGHR---DEVLS  186 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE--ec-cccccc---CcEEE
Confidence            99999999999999999999999999999999964 6899999999999999999544321  11 245676   79999


Q ss_pred             EEEecCCcEEEE-EecCcEEEEeCCCCce------eeeec--------------------CCCCCCCeEEEEEccCCCEE
Q 006126          513 IQFHPDQIHLLS-IHEGQIDVYEAPTLNH------TSQLV--------------------PDKMDLPITYATYSCDGKCI  565 (660)
Q Consensus       513 ~~~sp~~~~l~~-~~d~~i~iwd~~~~~~------~~~~~--------------------~~~~~~~v~~~~~s~dg~~l  565 (660)
                      +.|+++|.++++ |.|.++++|++...+.      ...+.                    ...|...|-|+.|-  |+++
T Consensus       187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i  264 (385)
T KOG1034|consen  187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI  264 (385)
T ss_pred             EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence            999999999999 6999999999973221      11111                    11234445555553  6889


Q ss_pred             EEEecCCeEEEEEC-CCCeeEEEeecccc--cCCCC---cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          566 YVSCKSGHVKVFDT-STLELRCQINLTAY--AQPGT---ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       566 ~sg~~dg~I~iwd~-~~~~~~~~~~~~~~--~~~gh---~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ++=+-++.|..|.. +-++.+....+...  ...|+   ....++-+..+|.| -+++||.|...|+|.+||+...++
T Consensus       265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCC
Confidence            99888999999987 22221111110000  00000   13346667889999 789999999999999999998766

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=7.4e-17  Score=171.80  Aligned_cols=303  Identities=13%  Similarity=0.073  Sum_probs=211.9

Q ss_pred             CCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec--CCCEEEEEECCCcEEEE
Q 006126          261 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLW  338 (660)
Q Consensus       261 ~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp--dg~~l~s~s~dg~i~vw  338 (660)
                      ++.....+.|+|-...++++.....|++||.+.   ...+..+... ..-...|..+.+-.  |...+++|+.||.|+||
T Consensus      1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~---~~~l~~F~n~-~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK---GRLLNGFDNG-AFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             CCCCCceeeecCCCceeEEcCCcceEEEEeccc---CceeccccCC-CCCCCccceeeeecccchhheeeeccCceEEEe
Confidence            334456678999999999999999999999986   2333332211 11346788888875  45689999999999999


Q ss_pred             eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CC
Q 006126          339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP  414 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~  414 (660)
                      +--....     ....-+.-|..-++....      ..+.-.-+.|.  ..+|++++ -..|+|||.....++..+. +.
T Consensus      1139 k~y~~~~-----~~~eLVTaw~~Ls~~~~~------~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1139 KDYADKW-----KKPELVTAWSSLSDQLPG------ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS 1207 (1387)
T ss_pred             ccccccc-----CCceeEEeeccccccCcc------CCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC
Confidence            8433210     111123345544433221      11111345666  45555555 6899999999888887776 44


Q ss_pred             CCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCC--eEEEEEeCCCCE-EEEEeCCCcEEEEEcC
Q 006126          415 PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNR--ITCLAYSLSLNV-LVSSGADAQLCVWDAV  486 (660)
Q Consensus       415 ~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~--v~~l~~sp~~~~-l~s~s~dg~i~vwd~~  486 (660)
                      ...|+++.-+-. | .|++|..||.|++||.+...   .+..++.|+..  |..+.+.+.|-. |++|+.||.|++||++
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            556676665443 4 99999999999999987543   46777888877  999999987755 9999999999999999


Q ss_pred             CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-----CCCCCeEEEEEccC
Q 006126          487 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCD  561 (660)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d  561 (660)
                      .........   +.. |....+..+++..++....+++|..+.|+||++ .|+.+..+...     ...+.+.+++|+|-
T Consensus      1288 ~~~~e~~~~---iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKETFLT---IVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             cCcccccce---eee-ccccCccceeeeeccCCCeeeecCcceEEEEec-ChhhhcccccCcccccCcCCCcceeeecch
Confidence            842221111   111 110003589999999999999976699999998 45555444322     12567899999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCe
Q 006126          562 GKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       562 g~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      .-++|+|+.|..|.||....++
T Consensus      1363 ~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hHhhhhccCCceEEEeecCCcC
Confidence            9999999999999999877654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.9e-17  Score=156.84  Aligned_cols=312  Identities=11%  Similarity=0.053  Sum_probs=213.1

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.+.|.++.||.++++|++|+.|..+++|.++..-.               .++.+.+... ...|...|.|++|.  +
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------~k~~KPI~~~-~~~H~SNIF~L~F~~~N  117 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------RKTPKPIGVM-EHPHRSNIFSLEFDLEN  117 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------hcCCCCceec-cCccccceEEEEEccCC
Confidence            4999999999999999999999999999999764321               1111222211 11467899999999  6


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc-eeeE--eeccCCCe
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAK--LKGHQNRI  459 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~-~~~~--~~~~~~~v  459 (660)
                      .++.+|. +++|..-|+++.+.+..+..  ..+.|+.+..+|.. .|++.+.++.|.+||.+..+ .+..  +.......
T Consensus       118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            6788888 89999999999888777653  23589999999998 99999999999999998765 2222  22244567


Q ss_pred             EEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeee--eeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeC
Q 006126          460 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA  535 (660)
Q Consensus       460 ~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~  535 (660)
                      ..+.|+|.. .+|++.+..+-+.+||++....    ++..  ...+-......-.++.|+|+|..+++- ....=.+||+
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~----~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQAR----PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccc----hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence            788899954 5677888889999999987431    1110  001100000133578899999999884 5555667888


Q ss_pred             CCCceeeeecCCCC------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE----------------Eeecccc
Q 006126          536 PTLNHTSQLVPDKM------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC----------------QINLTAY  593 (660)
Q Consensus       536 ~~~~~~~~~~~~~~------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~----------------~~~~~~~  593 (660)
                      .+.++. .++..+.      ...+.+++|-.|. .+++|+.+-.|++|.+....-..                .+.....
T Consensus       274 ~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  274 ISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             ecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence            775542 3332211      2345567776554 49999999999999975321100                1111112


Q ss_pred             cCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCcccc
Q 006126          594 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSR  648 (660)
Q Consensus       594 ~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~~~  648 (660)
                      +..|| ..-++  .|.|+| ...+|++.|-...++||....-.  |....|.|-.
T Consensus       352 VLrGH-RSv~N--QVRF~~-H~~~l~SSGVE~~~KlWS~~r~P--~~~D~~~E~~  400 (609)
T KOG4227|consen  352 VLRGH-RSVPN--QVRFSQ-HNNLLVSSGVENSFKLWSDHRLP--WSYDLPFERR  400 (609)
T ss_pred             EEecc-ccccc--ceeecC-CcceEeccchhhheeccccccCC--cccCCccccC
Confidence            24466 33344  899999 78899999999999999875432  6555554443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.2e-18  Score=168.17  Aligned_cols=292  Identities=14%  Similarity=0.164  Sum_probs=218.3

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|..+.|...|..|++||.|..|.+|||......+.                      +..||...|..-.|-   
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------f~SGH~~NvfQaKFiP~s  197 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------FESGHCNNVFQAKFIPFS  197 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcccc----------------------cccccccchhhhhccCCC
Confidence            3999999999999999999999999999999987764221                      222677777766665   


Q ss_pred             -CCEEEEEe-CCcEEEEECCC-CeE--EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee---cc
Q 006126          386 -GSHLFSAS-GGKISIFSLET-FQT--LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK---GH  455 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~-~~~--~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~---~~  455 (660)
                       ...+++++ ||.|++=.+.. +.+  ...+..|.+.|.-++.-|+.  .|.+++.|+.+.-+|++++.....+.   .+
T Consensus       198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~  277 (559)
T KOG1334|consen  198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD  277 (559)
T ss_pred             CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence             55688888 99999987643 333  33456899999999999998  89999999999999999876544332   23


Q ss_pred             CC---CeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeee------eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE
Q 006126          456 QN---RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKL------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  525 (660)
Q Consensus       456 ~~---~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  525 (660)
                      ..   ..+.++.+|... .+++++.|..+++||.+.-...      ...+...+.. ..+  ..|++++|+.++.-++++
T Consensus       278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~--v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDP--VNITGLVYSHDGSELLAS  354 (559)
T ss_pred             CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCc--ccceeEEecCCccceeee
Confidence            33   567888899654 7999999999999999874321      1111111111 122  579999999777776665


Q ss_pred             -ecCcEEEEeCCC--C----------ceee-eecCCCCCCCeEEEEE-ccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          526 -HEGQIDVYEAPT--L----------NHTS-QLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       526 -~d~~i~iwd~~~--~----------~~~~-~~~~~~~~~~v~~~~~-s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                       .|-.|+++.-..  |          ..+. .++++.....|..+-| .|...|+++|+.-|.|.||+-.+++++..+..
T Consensus       355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg  434 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG  434 (559)
T ss_pred             ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence             888999995432  2          1222 2555444566777776 58899999999999999999999998887763


Q ss_pred             ccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          591 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       591 ~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      -        .+  -|.|+.-|| .-..||++|-|.-|+||.+.+.+
T Consensus       435 D--------r~--VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  435 D--------RH--VVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             c--------cc--eEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence            1        22  345999999 67899999999999999996554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=2.1e-17  Score=158.39  Aligned_cols=201  Identities=11%  Similarity=0.118  Sum_probs=164.3

Q ss_pred             CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCC-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEE
Q 006126          374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV  440 (660)
Q Consensus       374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~i  440 (660)
                      ||.++|..++|+   +..||+|+ |.+|.||.+..+       +++..+.+|...|.-++|+|..  .|++++.|.+|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            899999999999   77899999 899999998654       4566788999999999999988  8999999999999


Q ss_pred             EeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       441 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      ||+.+|+.+-++. |...|.++.|+.||.+|++++.|..|+|||.++++.+...      .+|.+  ..-..+.|-.+|.
T Consensus       159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG--~k~~Raifl~~g~  229 (472)
T KOG0303|consen  159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEG--AKPARAIFLASGK  229 (472)
T ss_pred             EeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccC--CCcceeEEeccCc
Confidence            9999999888888 9999999999999999999999999999999997654322      34443  4556788999999


Q ss_pred             EEEEE----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEECCCCe
Q 006126          521 HLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLE  583 (660)
Q Consensus       521 ~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-g~~dg~I~iwd~~~~~  583 (660)
                      .+.+|    ++..+-+||..+.+.-..+..-+....|.---|++|.+.++. |-.|+.||-|.+....
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            55554    578899999876543322222233666777778899888875 4458999999988755

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=1.8e-17  Score=150.81  Aligned_cols=284  Identities=14%  Similarity=0.062  Sum_probs=191.4

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      |+-++++|.. +.+.+|..            ..+|.+|..-|.|++|++++..   ....  +... |...|..+.--|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa------------~~rL~sg~~~G~V~~w~lqt~r---~~~~--~r~~-g~~~it~lq~~p~   67 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQA------------NERLMSGLSVGIVKMWVLQTER---DLPL--IRLF-GRLFITNLQSIPN   67 (323)
T ss_pred             CeeEeccccchheehhhcc------------chhhhcccccceEEEEEeecCc---cchh--hhhh-ccceeeceeecCC
Confidence            4445556655 56654442            3358889999999999998622   2222  2211 6888999999998


Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C----------CEEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G----------SHLFS  391 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~----------~~l~s  391 (660)
                      +. +.+-+.|+.+.+|++........                          |.-.++++.|. .          ..++.
T Consensus        68 d~-l~tqgRd~~L~lw~ia~s~~i~i--------------------------~Si~~nslgFCrfSl~~~~k~~eqll~y  120 (323)
T KOG0322|consen   68 DS-LDTQGRDPLLILWTIAYSAFISI--------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEY  120 (323)
T ss_pred             cc-hhhcCCCceEEEEEccCcceEEE--------------------------eeeeccccccccceeccCCCcchhheec
Confidence            54 88999999999999876543111                          22222222222 0          11111


Q ss_pred             EeCC--cEEEEECCCCeEEEEEc----CCCCCeEEEEEcCC-C---eEEEEeCCCeEEEEeCCCCce----------eeE
Q 006126          392 ASGG--KISIFSLETFQTLATFA----NPPPIATYFILLPQ-D---LFAFGFDDSSILVHCPCTKKT----------KAK  451 (660)
Q Consensus       392 ~~dg--~I~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~-~---~l~s~~~d~~I~iwd~~~~~~----------~~~  451 (660)
                      -+.|  .+.+-|......++...    +..+.+.|..+..+ +   .+++|..+|.+.+||+.++..          ...
T Consensus       121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence            1111  12222322222222221    23455667665443 3   678899999999999998733          333


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI  530 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i  530 (660)
                      ...|..+|.++.|.+.-..=++|+.+..+..|.+......  ..+.....-..   -.|..+..-||++.+++ |.|+.|
T Consensus       201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--lq~~~e~~lkn---pGv~gvrIRpD~KIlATAGWD~Ri  275 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--LQIRKEITLKN---PGVSGVRIRPDGKILATAGWDHRI  275 (323)
T ss_pred             hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc--ccccceEEecC---CCccceEEccCCcEEeecccCCcE
Confidence            4568999999999886666778888889999988753211  11110111112   36888999999999999 799999


Q ss_pred             EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      |||..++..++..+.-  |...|.+++|+|+...+|+++.|+.|.+|++
T Consensus       276 RVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  276 RVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999998875  6899999999999999999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.2e-17  Score=165.42  Aligned_cols=257  Identities=14%  Similarity=0.159  Sum_probs=184.8

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL  389 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l  389 (660)
                      |.+.|..++|.|....|++++.||++++|+++....                             +..            
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-----------------------------s~~------------  331 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-----------------------------SAE------------  331 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-----------------------------ccc------------
Confidence            788888888888888888999999998888733110                             100            


Q ss_pred             EEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC----------ceeeEeeccCCC
Q 006126          390 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK----------KTKAKLKGHQNR  458 (660)
Q Consensus       390 ~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~----------~~~~~~~~~~~~  458 (660)
                                   ..-+++.+|.+|.++|.|+++.+++ .+++|+-||+|+.|++...          .....+.||.+.
T Consensus       332 -------------~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda  398 (577)
T KOG0642|consen  332 -------------KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA  398 (577)
T ss_pred             -------------cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence                         1135677888999999999999999 9999999999999954311          234567899999


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEEE-ecCcEEEEeCC
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAP  536 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~-~d~~i~iwd~~  536 (660)
                      |+.+++|+....|++++.||+++.|+...... .  .+. ....|    +...++.+-... ...+++ .-+.--++|+.
T Consensus       399 vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~--~f~-~~~e~----g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  399 VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-C--TFG-EPKEH----GYPLSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eeeeeecccccceeeecCCceEEeeccCCcCc-c--ccC-Ccccc----CCcceEeeccchhHhhhhhcccccccchhhh
Confidence            99999999999999999999999999887443 0  111 12222    234455554333 122222 33333344444


Q ss_pred             CCceeeeecCCC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126          537 TLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH  611 (660)
Q Consensus       537 ~~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s  611 (660)
                      .+..+..+....     ....+..+.+.|.+.+.+++.+|+.|+++|..+++++.....+          .+.++++++.
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~----------~~svtslai~  540 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH----------KDSVTSLAID  540 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec----------cceecceeec
Confidence            444444332211     1345777889999999999999999999999999998876633          3445699999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126          612 PLEPNRIALGLTNGRVHVIEPLESEVEW  639 (660)
Q Consensus       612 p~d~~~l~s~s~Dg~v~iw~~~~~~~~w  639 (660)
                      | +|.+|++++.||.|++|++....+.-
T Consensus       541 ~-ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  541 P-NGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             C-CCceEEeecCCceeehhhccchheee
Confidence            9 89999999999999999998776643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=2.7e-15  Score=154.57  Aligned_cols=272  Identities=12%  Similarity=0.127  Sum_probs=173.3

Q ss_pred             EEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeE
Q 006126          278 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMES  356 (660)
Q Consensus       278 ~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~  356 (660)
                      ++...++.|.+|++...........+.     +.+....++++|++++|++++. ++.|.+|++......          
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l----------   70 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL----------   70 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce----------
Confidence            344678999999996311111222221     3456778999999999877754 788888887522110          


Q ss_pred             EEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCC-Ce---EEEEEcCCCCCeEEEEEcCCC-
Q 006126          357 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQ---TLATFANPPPIATYFILLPQD-  427 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~-~~---~~~~~~~~~~~v~~v~~sp~~-  427 (660)
                              ..+...   ........++++  ++++++++  ++.|.+|++.+ +.   .+..+. +.....+++++|++ 
T Consensus        71 --------~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~  138 (330)
T PRK11028         71 --------TFAAES---PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNR  138 (330)
T ss_pred             --------EEeeee---cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCC
Confidence                    001100   122345678888  77888777  78999999974 32   223232 22345678899999 


Q ss_pred             eE-EEEeCCCeEEEEeCCCCceeeE-----ee-ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--Ceeeeceeee
Q 006126          428 LF-AFGFDDSSILVHCPCTKKTKAK-----LK-GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKFLH  497 (660)
Q Consensus       428 ~l-~s~~~d~~I~iwd~~~~~~~~~-----~~-~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~~~~  497 (660)
                      .+ ++...++.|.+||+.+...+..     .. ........+.|+|+|++++++.. +++|.+||+..  ++......+.
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            55 5566779999999976332211     11 12234678899999999988876 89999999974  2221111111


Q ss_pred             eeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccCCCEEEEEec-
Q 006126          498 SFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCK-  570 (660)
Q Consensus       498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-  570 (660)
                      ....... .......+.++|+|++++++  .++.|.+|++....    .+..+..   ......+.|+|||++|+++.. 
T Consensus       219 ~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~  294 (330)
T PRK11028        219 MMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQK  294 (330)
T ss_pred             cCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEEcc
Confidence            1111100 00234468999999999985  56899999986432    2222221   234557899999999998776 


Q ss_pred             CCeEEEEECC
Q 006126          571 SGHVKVFDTS  580 (660)
Q Consensus       571 dg~I~iwd~~  580 (660)
                      ++.|.+|+++
T Consensus       295 ~~~v~v~~~~  304 (330)
T PRK11028        295 SHHISVYEID  304 (330)
T ss_pred             CCcEEEEEEc
Confidence            8999999875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=3.5e-17  Score=150.75  Aligned_cols=226  Identities=13%  Similarity=0.205  Sum_probs=171.5

Q ss_pred             CCcEEEEECCCCe--E-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-------eEEEEeCCCC---------ceeeEe
Q 006126          394 GGKISIFSLETFQ--T-LATFANPPPIATYFILLPQD--LFAFGFDDS-------SILVHCPCTK---------KTKAKL  452 (660)
Q Consensus       394 dg~I~iwd~~~~~--~-~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~-------~I~iwd~~~~---------~~~~~~  452 (660)
                      |+.|.+.++..+.  . .+.|..+.+.|+.++-+|..  .|+++..+.       .+.||.+...         +++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            4677777765432  2 33466788899999999987  677766532       5789987532         233344


Q ss_pred             e-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEEEecCc
Q 006126          453 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSIHEGQ  529 (660)
Q Consensus       453 ~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~d~~  529 (660)
                      . .+-+.|.|+.|.|++..+++.. |..|.+|++..+..+..........++.   ...++-+|+|  +|..+++..|++
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~---~~ftsg~WspHHdgnqv~tt~d~t  194 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR---HSFTSGAWSPHHDGNQVATTSDST  194 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccc---ceecccccCCCCccceEEEeCCCc
Confidence            3 3556899999999999999876 8999999999876532222211222333   4677888998  899999999999


Q ss_pred             EEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEE
Q 006126          530 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      +..||+++.++...+.. .|...|..+.|+|+.+ +|++++.||.|+|||.+. ..++..+.       +| .+.++  +
T Consensus       195 l~~~D~RT~~~~~sI~d-AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~H-sHWvW--~  263 (370)
T KOG1007|consen  195 LQFWDLRTMKKNNSIED-AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------GH-SHWVW--A  263 (370)
T ss_pred             EEEEEccchhhhcchhh-hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------CC-ceEEE--E
Confidence            99999999988877765 5788999999999876 677899999999999985 44555555       44 67777  9


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          608 IAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      |.|+|...+++++||.|..|.+|...+
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccc
Confidence            999998788999999999999998754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.75  E-value=3.6e-16  Score=146.58  Aligned_cols=302  Identities=14%  Similarity=0.124  Sum_probs=201.2

Q ss_pred             EecCCCCEEEEE-eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEE-EECCCcEEEEeccCCcee
Q 006126          269 TSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       269 ~~spdg~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s-~s~dg~i~vw~~~~~~~~  346 (660)
                      .|+.|.-+++++ ..|+.|.+|++..    .+.... +..  -..++..+.|||||+.++. ...|-.|.||.+.+.+. 
T Consensus        55 eW~ads~~ilC~~yk~~~vqvwsl~Q----pew~ck-Ide--g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-  126 (447)
T KOG4497|consen   55 EWKADSCHILCVAYKDPKVQVWSLVQ----PEWYCK-IDE--GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-  126 (447)
T ss_pred             eeeccceeeeeeeeccceEEEEEeec----ceeEEE-ecc--CCCcceeeeECCCcceEeeeecceeEEEEEEecccee-
Confidence            555666555443 4577889999873    333222 222  3778999999999976655 44588999998766543 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--C--CcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATY  420 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--d--g~I~iwd~~~~~~~~~~~~~~~~v~~  420 (660)
                                        ..++     ..+..+..++|+  |++.+.++  |  ..+.+..-.....++.+....-..+.
T Consensus       127 ------------------~~~~-----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg  183 (447)
T KOG4497|consen  127 ------------------YLLP-----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG  183 (447)
T ss_pred             ------------------EEec-----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence                              1121     234456788888  77777776  4  34555544455566667666777789


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece-----
Q 006126          421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-----  494 (660)
Q Consensus       421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----  494 (660)
                      +.|+||| .++         +||.--.-.+..+. ..-.+..++|+|.+++|++|+.|+.+|+.+--+++.....     
T Consensus       184 ieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s  253 (447)
T KOG4497|consen  184 IEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS  253 (447)
T ss_pred             ceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence            9999998 665         45532111111121 2346888999999999999999999988655443321100     


Q ss_pred             ----------------------ee----------------------------eeee--eccCCCCCCeEEEEEecCCcEE
Q 006126          495 ----------------------FL----------------------------HSFQ--TGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       495 ----------------------~~----------------------------~~~~--~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                                            ++                            ++..  ....++.-.+.-++|++|..++
T Consensus       254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~  333 (447)
T KOG4497|consen  254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYA  333 (447)
T ss_pred             ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEE
Confidence                                  00                            0000  0000112356679999999999


Q ss_pred             EEEec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126          523 LSIHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI  599 (660)
Q Consensus       523 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~  599 (660)
                      ++-.|   +.+.+||++..+....+.   ...+|....|+|....|+.+.....+++|.......+..-           
T Consensus       334 aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-----------  399 (447)
T KOG4497|consen  334 ATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-----------  399 (447)
T ss_pred             eeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-----------
Confidence            99544   679999998877665553   3788999999999988888877788999998875555432           


Q ss_pred             CcccceEEEEEecCCCCEEEEEeCCCe
Q 006126          600 SLELYPLVIAAHPLEPNRIALGLTNGR  626 (660)
Q Consensus       600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~  626 (660)
                      ..+.++..+.|+- +|..++.++.|.-
T Consensus       400 ~~GF~i~~l~W~~-~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  400 KKGFNIQKLQWLQ-PGEFIVLCGKDAF  425 (447)
T ss_pred             CCCceeeeEEecC-CCcEEEEEcCCce
Confidence            2225566999999 8999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=8e-17  Score=148.41  Aligned_cols=257  Identities=14%  Similarity=0.159  Sum_probs=182.7

Q ss_pred             eecCCCCceeeEecCCCC-EEEEEeCC-------CcEEEEeccCcCCCcceeeee----cCCCCCCCCeEEEEEecCCCE
Q 006126          258 CFNDNNQSRESTSLPDAD-SAVCAKSL-------EKSVNLKLQLINEPSECRTLL----LPDNSFGGRVVRLIYSHSGDF  325 (660)
Q Consensus       258 ~~~~~~~~~~~~~spdg~-~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~----l~~~~h~~~V~~~~~spdg~~  325 (660)
                      +|.+......+.-+|-.+ .|+++..+       ..+.||.+.....+.....+.    |+. .|-+.|.|+.|.|++..
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCe
Confidence            334444445456677655 44454432       236899997644443222211    221 24568999999999999


Q ss_pred             EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEeCCcEEEEE
Q 006126          326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFS  401 (660)
Q Consensus       326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~dg~I~iwd  401 (660)
                      +++-. |..|.+|+++....+..           .....      ...+|....++-+|+    ++.+++.+|+++..||
T Consensus       138 lasm~-dn~i~l~~l~ess~~va-----------ev~ss------~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D  199 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVA-----------EVLSS------ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWD  199 (370)
T ss_pred             eEEec-cCceEEEEcccCcchhe-----------eeccc------ccccccceecccccCCCCccceEEEeCCCcEEEEE
Confidence            88876 88899999887765211           00000      000355567777888    7889999999999999


Q ss_pred             CCCCeEEEEEc-CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCC-CCEEEEEeC
Q 006126          402 LETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLS-LNVLVSSGA  476 (660)
Q Consensus       402 ~~~~~~~~~~~-~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~  476 (660)
                      +++.++...+. .|...|..+.|+|+-  +|++|++||.|++||.+. ..+++.+.+|...|+++.|+|. ..++++|+.
T Consensus       200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S  279 (370)
T KOG1007|consen  200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS  279 (370)
T ss_pred             ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence            99988777665 788899999999998  999999999999999875 4578889999999999999994 467889999


Q ss_pred             CCcEEEEEcCCCee-------------------eeceeeee----eeeccCCCCCCeEEEEEecCCcEEEE--EecCcEE
Q 006126          477 DAQLCVWDAVGWKK-------------------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQID  531 (660)
Q Consensus       477 dg~i~vwd~~~~~~-------------------~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~  531 (660)
                      |..|.+|...+-..                   .+.++++.    .+..|.   ..|++++|+.-..++++  +.||.+.
T Consensus       280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEE
Confidence            99999997654210                   00112221    344566   68999999988888776  5899988


Q ss_pred             EEeCC
Q 006126          532 VYEAP  536 (660)
Q Consensus       532 iwd~~  536 (660)
                      |=.+.
T Consensus       357 Is~V~  361 (370)
T KOG1007|consen  357 ISSVP  361 (370)
T ss_pred             eecCC
Confidence            86654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=4.4e-16  Score=166.03  Aligned_cols=295  Identities=15%  Similarity=0.141  Sum_probs=202.0

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----C
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----G  386 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~  386 (660)
                      ..+...+.|+|-...++++...-.|+|||++.+....          -|+.  +.        .....|+.+.+-    .
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~----------~F~n--~~--------~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLN----------GFDN--GA--------FPDTRVSDLELINEQDD 1123 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceec----------cccC--CC--------CCCCccceeeeecccch
Confidence            3356678899988889999888899999998776411          1111  10        245668888887    4


Q ss_pred             CEEEEEe-CCcEEEEECC-----CCeEEEEEcCC-------CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          387 SHLFSAS-GGKISIFSLE-----TFQTLATFANP-------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~-----~~~~~~~~~~~-------~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      ..+++|+ ||.|+||+-.     +.+.+..+.+-       .+.-.-+.|.... .|+++|+-..|+|||....+++..+
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence            4788888 9999999742     22334333211       1111346777766 8888888899999999988777666


Q ss_pred             ec-cCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE-EEE-EecC
Q 006126          453 KG-HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-IHEG  528 (660)
Q Consensus       453 ~~-~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~-~~d~  528 (660)
                      .. ....|+++.-+- .|+.+++|..||.|++||.+.....  ..+. ....|+.. ..|..+.+.+.|-- |++ +.+|
T Consensus      1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~-~~R~h~~~-~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVC-VYREHNDV-EPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred             ccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc--ccce-eecccCCc-ccceeEEeecCCCcceeeeccCC
Confidence            43 445666665433 5799999999999999999875432  1222 34455520 23889999886654 666 6999


Q ss_pred             cEEEEeCCCCceeeeecCCCC---CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecc-cccCCCCcCcccc
Q 006126          529 QIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT-AYAQPGTISLELY  604 (660)
Q Consensus       529 ~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-~~~~~gh~~~~v~  604 (660)
                      .|++||++.......+....|   ++..+++..+++...+|+|+. +.|+||++...+ +..+... .+.  |.....  
T Consensus      1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~--~q~~gs-- 1353 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM--GQRIGS-- 1353 (1387)
T ss_pred             eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc--cCcCCC--
Confidence            999999987432222221112   235999999999999999998 999999987543 4444332 121  111222  


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      +.|++||| ..-++|.|+.|.+|.||....++
T Consensus      1354 ~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1354 VSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence            35999999 67889999999999999987654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-16  Score=157.66  Aligned_cols=209  Identities=16%  Similarity=0.194  Sum_probs=148.7

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      .||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+....                      +..||...|.++.|-  
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs----------------------I~TgHtaNIFsvKFvP~  104 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS----------------------ISTGHTANIFSVKFVPY  104 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------eecccccceeEEeeecc
Confidence            35999999999999999999999999999998654433111                      122899999999998  


Q ss_pred             --CCEEEEEe-CCcEEEEECCC----------CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCcee-
Q 006126          386 --GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-  449 (660)
Q Consensus       386 --~~~l~s~~-dg~I~iwd~~~----------~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~-  449 (660)
                        +..+++|. |..|+++|+..          .+....+..|...|..++..|++  .+.+++.||+|+-+|++..... 
T Consensus       105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~  184 (758)
T KOG1310|consen  105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN  184 (758)
T ss_pred             CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence              55777777 99999999974          12334456788899999999999  8999999999999999863211 


Q ss_pred             ---------eEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC--------eeeec-----eeeeeeeeccCCC
Q 006126          450 ---------AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGW--------KKLCS-----KFLHSFQTGLVPE  506 (660)
Q Consensus       450 ---------~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~--------~~~~~-----~~~~~~~~~~~~~  506 (660)
                               ..+...--...|+..+|. ..+|++|+.|-..++||.+.-        .....     .++.....+|...
T Consensus       185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence                     111112234678999994 567999999999999995421        10000     0122112222200


Q ss_pred             C--------CCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC
Q 006126          507 T--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL  538 (660)
Q Consensus       507 ~--------~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~  538 (660)
                      +        ..++-+.|+|+|.-|+++ ....|+++|+..+
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            0        125668999999999987 4557999997543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.74  E-value=6.3e-17  Score=163.32  Aligned_cols=249  Identities=18%  Similarity=0.167  Sum_probs=181.6

Q ss_pred             EecCCCCEEEE--EeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCce
Q 006126          269 TSLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       269 ~~spdg~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .|..+.+++|.  ++..|.|-|+++..   ++++-.-.+++-.....|..+.|.| |...||.++.||.|++|.+..+..
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl  662 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL  662 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence            45555566653  55679999999986   5555444444444677899999999 667899999999999998766543


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP  425 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  425 (660)
                      ..                                                       ...++...+..|...|+++.|+|
T Consensus       663 ~e-------------------------------------------------------~~~tPe~~lt~h~eKI~slRfHP  687 (1012)
T KOG1445|consen  663 PE-------------------------------------------------------NEMTPEKILTIHGEKITSLRFHP  687 (1012)
T ss_pred             Cc-------------------------------------------------------ccCCcceeeecccceEEEEEecc
Confidence            00                                                       01234455678889999999999


Q ss_pred             CC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          426 QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       426 ~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      -.  .|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+++.+.||+|++|..++++    .++   .++.
T Consensus       688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv---~Eg~  760 (1012)
T KOG1445|consen  688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPV---YEGK  760 (1012)
T ss_pred             hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Ccc---ccCC
Confidence            76  99999999999999999999999999999999999999999999999999999999998854    232   2333


Q ss_pred             CCCCCCeEEEEEecCCcEEEE-Eec----CcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEE
Q 006126          504 VPETTIVNHIQFHPDQIHLLS-IHE----GQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVK  575 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~-~~d----~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~  575 (660)
                      .+....-..+.|.-||+++++ |.|    ..|.+||..+-  .++.+...+ ....+.--.+.+|.. ++++|-.|..|+
T Consensus       761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKGD~~v~  839 (1012)
T KOG1445|consen  761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKGDRFVN  839 (1012)
T ss_pred             CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec-ccCccccccccCCCceEEEecCCCceEE
Confidence            221134456889999999988 544    57999997653  333333221 111222223455655 566788899999


Q ss_pred             EEECCCCe
Q 006126          576 VFDTSTLE  583 (660)
Q Consensus       576 iwd~~~~~  583 (660)
                      +|.+-...
T Consensus       840 ~yEv~~es  847 (1012)
T KOG1445|consen  840 MYEVIYES  847 (1012)
T ss_pred             EEEecCCC
Confidence            99986544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=2.8e-16  Score=150.80  Aligned_cols=230  Identities=12%  Similarity=0.123  Sum_probs=169.7

Q ss_pred             CCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126          308 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  385 (660)
Q Consensus       308 ~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-  385 (660)
                      .||+++|..++|+| +...||+||.|.+|.||++..+.....            . + ..+..+  .||...|--+.|+ 
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------l-t-epvv~L--~gH~rrVg~V~wHP  141 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------L-T-EPVVEL--YGHQRRVGLVQWHP  141 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------c-c-cceEEE--eecceeEEEEeecc
Confidence            56999999999999 556789999999999999877654111            1 1 111111  2899999999999 


Q ss_pred             --CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC-CeE
Q 006126          386 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT  460 (660)
Q Consensus       386 --~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-~v~  460 (660)
                        .+.|++++ |.+|.+|++.+|+.+-++. |...|.++.|+.|| ++++.+.|+.|+|||.++++.+..-.+|.+ .-.
T Consensus       142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~  220 (472)
T KOG0303|consen  142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA  220 (472)
T ss_pred             cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence              77788877 9999999999999988887 99999999999999 999999999999999999999988777765 334


Q ss_pred             EEEEeCCCCEEEEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeC
Q 006126          461 CLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA  535 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~  535 (660)
                      .+.|-.+|..+-+|.   .+..+-+||...-+.-  ..+++ . ...   +.|.---|.||.+.++. | .|+.|+-|.+
T Consensus       221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP--~~~~e-l-DtS---nGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP--IALQE-L-DTS---NGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             eeEEeccCceeeeccccccccceeccCcccccCc--ceeEE-e-ccC---CceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            556888888555553   3678999998773211  11111 1 111   45666677888888877 6 8999999999


Q ss_pred             CCCceeeeecC-CCCCCCeEEEEEccC
Q 006126          536 PTLNHTSQLVP-DKMDLPITYATYSCD  561 (660)
Q Consensus       536 ~~~~~~~~~~~-~~~~~~v~~~~~s~d  561 (660)
                      .+..+...+.. -....+-..+.|-|.
T Consensus       294 t~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  294 TNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             cCCCceeEEecccccCCcccccccccc
Confidence            76653222211 012444555666654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=5.8e-15  Score=152.12  Aligned_cols=271  Identities=11%  Similarity=0.061  Sum_probs=171.4

Q ss_pred             EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECC
Q 006126          328 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE  403 (660)
Q Consensus       328 s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~  403 (660)
                      +...++.|.+|++.+...                  -..++..   .+.+....++++  +++|++++  ++.|.+|++.
T Consensus         7 ~~~~~~~I~~~~~~~~g~------------------l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~   65 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGA------------------LTLLQVV---DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA   65 (330)
T ss_pred             EcCCCCCEEEEEECCCCc------------------eeeeeEE---ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence            345689999999853211                  0011111   133446677888  77887765  6899999996


Q ss_pred             -CCeE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCC-Cc---eeeEeeccCCCeEEEEEeCCCCEEEEE
Q 006126          404 -TFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT-KK---TKAKLKGHQNRITCLAYSLSLNVLVSS  474 (660)
Q Consensus       404 -~~~~--~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~-~~---~~~~~~~~~~~v~~l~~sp~~~~l~s~  474 (660)
                       +++.  ..... .......++++|++ .+++++ .++.|.+|++.+ +.   .+..+. +.....+++++|+|++++++
T Consensus        66 ~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~  143 (330)
T PRK11028         66 DDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP  143 (330)
T ss_pred             CCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence             3433  22222 23345689999999 666655 588999999864 32   222222 23446778899999988655


Q ss_pred             e-CCCcEEEEEcCCCeeeec---eeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCC--Cc--eeeee
Q 006126          475 G-ADAQLCVWDAVGWKKLCS---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LN--HTSQL  544 (660)
Q Consensus       475 s-~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~--~~--~~~~~  544 (660)
                      + .++.|.+||+.+......   .... ...+     .....++|+|+|++++++  .+++|.+||+..  ++  .+..+
T Consensus       144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g-----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~  217 (330)
T PRK11028        144 CLKEDRIRLFTLSDDGHLVAQEPAEVT-TVEG-----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL  217 (330)
T ss_pred             eCCCCEEEEEEECCCCcccccCCCcee-cCCC-----CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence            5 569999999986321111   0111 1122     346789999999999884  479999999973  32  23333


Q ss_pred             cCC----CCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126          545 VPD----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       545 ~~~----~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~  619 (660)
                      ...    .+......+.|+|+|++++++.. ++.|.+|++........+..+  .+.|     .....+.++| ||++|+
T Consensus       218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~--~~~~-----~~p~~~~~~~-dg~~l~  289 (330)
T PRK11028        218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH--QPTE-----TQPRGFNIDH-SGKYLI  289 (330)
T ss_pred             ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE--Eecc-----ccCCceEECC-CCCEEE
Confidence            211    01223346889999999999865 689999999654321121111  1111     1233789999 899988


Q ss_pred             EEeC-CCeEEEEeCCCC
Q 006126          620 LGLT-NGRVHVIEPLES  635 (660)
Q Consensus       620 s~s~-Dg~v~iw~~~~~  635 (660)
                      +++. +++|.+|++...
T Consensus       290 va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        290 AAGQKSHHISVYEIDGE  306 (330)
T ss_pred             EEEccCCcEEEEEEcCC
Confidence            7775 899999988643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.3e-14  Score=138.64  Aligned_cols=236  Identities=13%  Similarity=0.169  Sum_probs=174.5

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF  390 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~  390 (660)
                      ...+..+.|..+...|..|+.||. ++|+......                    +...   ......|-.+-|+..++|
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--------------------~~~~---~~~~~~IvEmLFSSSLva   60 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--------------------CFSK---DTEGVSIVEMLFSSSLVA   60 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHH--------------------hhcc---cCCCeEEEEeecccceeE
Confidence            456777779999998888888875 3454433221                    0000   012233555556677777


Q ss_pred             EEe-C--CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec---cCCCeEEEEE
Q 006126          391 SAS-G--GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAY  464 (660)
Q Consensus       391 s~~-d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~---~~~~v~~l~~  464 (660)
                      ..+ +  ..+++++.+.+..+..+. ....|.++.++.+ +|+++-.+. |+|||+++.+.++++..   +...+.++.+
T Consensus        61 iV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   61 IVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP  137 (391)
T ss_pred             EEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence            777 4  469999998877776654 4566888888777 455555444 99999999999888754   4455666666


Q ss_pred             eCCCCEEEEEe--CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC-cEEEEeCCCCce
Q 006126          465 SLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPTLNH  540 (660)
Q Consensus       465 sp~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~-~i~iwd~~~~~~  540 (660)
                      ++.+.+++.-+  ..|.|.+||..+     -.++. ....|.   +.+.+++|+++|.+||++ ..| .|||+.+.+|+.
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~n-----l~~v~-~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k  208 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTIN-----LQPVN-TINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK  208 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEccc-----ceeee-EEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence            76777888643  368999999988     34444 455788   799999999999999995 445 489999999999


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      +..+.-+--...|.+++|+||+++|++.+..++|+||.+...
T Consensus       209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            999876544667899999999999999999999999998653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=8.4e-17  Score=161.30  Aligned_cols=274  Identities=11%  Similarity=0.039  Sum_probs=185.1

Q ss_pred             eecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcC---CCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCc
Q 006126          258 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN---EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT  334 (660)
Q Consensus       258 ~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~  334 (660)
                      +-+...|.+...|.|-...|++++.||++++|+++...   .......+++.  +|.++|.|++++++++.+++|+.||+
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr--aH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR--AHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe--cccCceEEEEecCCceEEEeeccCce
Confidence            44455566667888999999999999999999994321   11222334454  49999999999999999999999999


Q ss_pred             EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCC
Q 006126          335 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANP  414 (660)
Q Consensus       335 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~  414 (660)
                      |+.|++..+.-            -+|.             +                         |.  ......+.+|
T Consensus       368 I~~w~~p~n~d------------p~ds-------------~-------------------------dp--~vl~~~l~Gh  395 (577)
T KOG0642|consen  368 IRCWNLPPNQD------------PDDS-------------Y-------------------------DP--SVLSGTLLGH  395 (577)
T ss_pred             eeeeccCCCCC------------cccc-------------c-------------------------Cc--chhccceecc
Confidence            99998763321            0110             1                         00  0122345688


Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCee
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKK  490 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~  490 (660)
                      ...|+.+++++.. .|++++.||+++.|+...... .++...  .+.-.++.+-... ...++...-+.-.++++.....
T Consensus       396 tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~  474 (577)
T KOG0642|consen  396 TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD  474 (577)
T ss_pred             ccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh
Confidence            8889999999988 999999999999999876655 333321  2233444443222 1122222222222334433221


Q ss_pred             eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126          491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                      .....-........  ...+.-+.++|.+...+++ .|+.|+++|..+++++.....  |...++++++.|+|-+|++|+
T Consensus       475 ~~~~~s~~~~~~~~--~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a--~~~svtslai~~ng~~l~s~s  550 (577)
T KOG0642|consen  475 LLIFESSASPGPRR--YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA--HKDSVTSLAIDPNGPYLMSGS  550 (577)
T ss_pred             eeeccccCCCcccc--cCccceEEecCCCCeeEecccCCceecccccccccchheee--ccceecceeecCCCceEEeec
Confidence            11111110000000  0357778899999888885 889999999999999887754  689999999999999999999


Q ss_pred             cCCeEEEEECCCCeeEEEeec
Q 006126          570 KSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       570 ~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      .||.+++|.+....++....+
T Consensus       551 ~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  551 HDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             CCceeehhhccchheeecccc
Confidence            999999999987766655443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=1e-15  Score=165.74  Aligned_cols=251  Identities=13%  Similarity=0.185  Sum_probs=169.6

Q ss_pred             CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      .|...|..++.++.. .++++||.||+|++|+...-...   .....+...|+.             -...+.++...  
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---~~s~rS~ltys~-------------~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---GGSARSELTYSP-------------EGSRVEKVTMCGN 1109 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---cceeeeeEEEec-------------cCCceEEEEeccC
Confidence            378888888888755 99999999999999997654321   011111223332             34556666666  


Q ss_pred             CCEEEEEe-CCcEEEEECCCC-------eEEEEEcCC--CCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          386 GSHLFSAS-GGKISIFSLETF-------QTLATFANP--PPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~--~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      ++.+|.++ ||.|++.+++..       .+.+....+  ...|..-++....   .++.+...+.|..||+++......+
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence            88888888 999999998752       122222222  2223333443332   7888889999999999887665554


Q ss_pred             ec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC---cEEEE-E-
Q 006126          453 KG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---IHLLS-I-  525 (660)
Q Consensus       453 ~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~-~-  525 (660)
                      +.  ..+.|++++.+|.+.++++|+..|.+.+||++-+..+..     ...++.   .++..+..+|-.   ...++ + 
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s-----w~~P~~---~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS-----WEHPAR---APIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec-----ccCccc---CCcceEEeeccCCCCceEEEecc
Confidence            42  457899999999999999999999999999998544332     222232   578888877643   34444 3 


Q ss_pred             -ecCcEEEEeCCCCceeeeecCCC-----------------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          526 -HEGQIDVYEAPTLNHTSQLVPDK-----------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       526 -~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                       ..+.|.+|++.+|.+..++....                 +.-.....++..-+.++++|+.|..|+.||....+
T Consensus      1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence             46789999999987766654431                 01112233344445789999999999999976543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=148.85  Aligned_cols=276  Identities=9%  Similarity=0.089  Sum_probs=184.7

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec--CCCEEEEEECCCcEEEEeccCCceeeeeecc
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV  352 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp--dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~  352 (660)
                      ..+|++-.+|.|++||..++.   .+..  +.  +|...+..+.|..  ....+.+++.||+|++||+........    
T Consensus        41 ~~vav~lSngsv~lyd~~tg~---~l~~--fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~----  109 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ---LLEE--FK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR----  109 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh---hhhe--ec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence            568889999999999998522   2222  22  3778888888877  456788999999999999876654111    


Q ss_pred             ceeEEEecCCCCceeeecccCCCC-CCeEEEEEe--CCEEEEEe-----CCcEEEEECCCCeE-EEEE-cCCCCCeEEEE
Q 006126          353 NMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFI  422 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s--~~~l~s~~-----dg~I~iwd~~~~~~-~~~~-~~~~~~v~~v~  422 (660)
                          ..|.             ++. .+..|++..  ++.+++|.     +-.|.+||++..+. ++.+ ..|...|+++.
T Consensus       110 ----~~~~-------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr  172 (376)
T KOG1188|consen  110 ----ISWT-------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR  172 (376)
T ss_pred             ----eecc-------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence                1121             233 456677766  56666665     35799999988665 5554 48999999999


Q ss_pred             EcCCC--eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126          423 LLPQD--LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       423 ~sp~~--~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      |+|.+  +|++|+.||.|.+||+....   .+.....|...|.++.|..++ +.+.+-+.+++..+|+++.+........
T Consensus       173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~  252 (376)
T KOG1188|consen  173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN  252 (376)
T ss_pred             ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence            99998  99999999999999987542   122223377889999999877 4588889999999999998764322222


Q ss_pred             eeeeeccCCC---CCCeEEEEEec-CCcEEEE-Ee-cCcEEEEeCC---CC---ceeeeecCCCCCCCeEEEEEccCCCE
Q 006126          497 HSFQTGLVPE---TTIVNHIQFHP-DQIHLLS-IH-EGQIDVYEAP---TL---NHTSQLVPDKMDLPITYATYSCDGKC  564 (660)
Q Consensus       497 ~~~~~~~~~~---~~~v~~~~~sp-~~~~l~~-~~-d~~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~dg~~  564 (660)
                      .....+-...   -..+.. +.+| ++...+. +. -+...++-+.   ++   +.+..+.+ +|...|.++.|...+.+
T Consensus       253 ~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~  330 (376)
T KOG1188|consen  253 PDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDV  330 (376)
T ss_pred             ccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccce
Confidence            1011000000   000111 1223 3333333 33 3444444332   22   33334433 46778899999999999


Q ss_pred             EEEEecCCeEEEEECC
Q 006126          565 IYVSCKSGHVKVFDTS  580 (660)
Q Consensus       565 l~sg~~dg~I~iwd~~  580 (660)
                      +++|++||.+.+|...
T Consensus       331 l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  331 LYTGGEDGLLQAWKVE  346 (376)
T ss_pred             eeccCCCceEEEEecC
Confidence            9999999999999963

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=4.7e-17  Score=148.18  Aligned_cols=243  Identities=13%  Similarity=0.156  Sum_probs=178.1

Q ss_pred             CCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceee
Q 006126          374 DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       374 ~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      +|.+.|+++.|. +++|.+|. .|.|++|++.+.+....++ .+...|+.+..-|++.+.+-+.|..+.+|++.-+..+.
T Consensus        12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~   91 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS   91 (323)
T ss_pred             cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence            688999999999 88899999 8999999999988888888 66778888888887778888999999999986422110


Q ss_pred             -------------------------Ee----------------------------eccCCCeEEEEEeC-CCC--EEEEE
Q 006126          451 -------------------------KL----------------------------KGHQNRITCLAYSL-SLN--VLVSS  474 (660)
Q Consensus       451 -------------------------~~----------------------------~~~~~~v~~l~~sp-~~~--~l~s~  474 (660)
                                               .+                            .+..+.+.|..+.. +++  ++++|
T Consensus        92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG  171 (323)
T KOG0322|consen   92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG  171 (323)
T ss_pred             EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence                                     00                            00123344544322 233  46778


Q ss_pred             eCCCcEEEEEcCCCeeeecee----eeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--cee--eeec
Q 006126          475 GADAQLCVWDAVGWKKLCSKF----LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHT--SQLV  545 (660)
Q Consensus       475 s~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~--~~~~  545 (660)
                      .++|.+.+||+.++..+-..+    +..-...|.   .+|.++.+.+.-..=++ |.+..+..|++...  .+.  ..+.
T Consensus       172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~  248 (323)
T KOG0322|consen  172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT  248 (323)
T ss_pred             ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence            889999999999974322111    111123455   68999998865444344 46667888887532  221  1111


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG  625 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg  625 (660)
                      .  ....|..+.+-||++.+|++++|+.||||+.++..++..++.|        .+.++  +++|+| +.+.+|.+|.|+
T Consensus       249 l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--------sagvn--~vAfsp-d~~lmAaaskD~  315 (323)
T KOG0322|consen  249 L--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--------SAGVN--AVAFSP-DCELMAAASKDA  315 (323)
T ss_pred             e--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--------hccee--EEEeCC-CCchhhhccCCc
Confidence            1  1456788999999999999999999999999999999999865        45566  999999 789999999999


Q ss_pred             eEEEEeC
Q 006126          626 RVHVIEP  632 (660)
Q Consensus       626 ~v~iw~~  632 (660)
                      +|.+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=2.2e-15  Score=139.19  Aligned_cols=284  Identities=13%  Similarity=0.133  Sum_probs=194.5

Q ss_pred             CCCeEEEEEec--C-CCEEEEEEC----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126          311 GGRVVRLIYSH--S-GDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA  383 (660)
Q Consensus       311 ~~~V~~~~~sp--d-g~~l~s~s~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  383 (660)
                      .-.+.++.||.  + +-+||.|+.    .+.|.|-.                   .+..+++.+..-. -.|.-+++.+.
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~-------------------ld~~s~e~~~~a~-fd~~YP~tK~~  103 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQ-------------------LDEDSGELVEDAN-FDHPYPVTKLM  103 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEE-------------------EccCCCceeccCC-CCCCCCccceE
Confidence            55788888883  3 346777775    23444432                   2333444332111 15889999999


Q ss_pred             Ee----CC--EEEEEeCCcEEEEECCC--CeEE--EEE-----cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC
Q 006126          384 LR----GS--HLFSASGGKISIFSLET--FQTL--ATF-----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK  446 (660)
Q Consensus       384 ~s----~~--~l~s~~dg~I~iwd~~~--~~~~--~~~-----~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~  446 (660)
                      |.    |.  -|++.++..+++|.+..  .+..  ..+     ..+..+++++.|+.-.  +|.+++-|.+..|||++++
T Consensus       104 wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~  183 (364)
T KOG0290|consen  104 WIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG  183 (364)
T ss_pred             ecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence            98    22  24555567899999873  2211  111     1456788999999877  8999999999999999987


Q ss_pred             c---eeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-CcE
Q 006126          447 K---TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIH  521 (660)
Q Consensus       447 ~---~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~  521 (660)
                      .   ....+..|...|..++|...+ ..+++.+.||.+|+||++.-+.  ...   +.++..+ ..+...++|++. -++
T Consensus       184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STI---IYE~p~~-~~pLlRLswnkqDpny  257 (364)
T KOG0290|consen  184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STI---IYEDPSP-STPLLRLSWNKQDPNY  257 (364)
T ss_pred             cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceE---EecCCCC-CCcceeeccCcCCchH
Confidence            4   366788899999999999855 4689999999999999998321  111   1222210 146788999884 566


Q ss_pred             EEE-E-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeec-ccccCC
Q 006126          522 LLS-I-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL-TAYAQP  596 (660)
Q Consensus       522 l~~-~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~~~  596 (660)
                      +++ . ....|.+.|++. ..++..+..  |...|..++|.|.. ..|++++.|..+.|||+...-......+ ..+.  
T Consensus       258 mATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--  333 (364)
T KOG0290|consen  258 MATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--  333 (364)
T ss_pred             HhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--
Confidence            676 5 456899999986 445666654  79999999999864 6899999999999999986432111111 1111  


Q ss_pred             CCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126          597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHV  629 (660)
Q Consensus       597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i  629 (660)
                        .++.|+  .+.|+|..+.+++.+... ++.|
T Consensus       334 --a~~EVN--qi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  334 --AGGEVN--QIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             --ccceee--eeeecccCCCEEEEEecC-eeeE
Confidence              134455  999999888999988643 4444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.5e-14  Score=152.81  Aligned_cols=332  Identities=9%  Similarity=0.077  Sum_probs=220.3

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.+++.|.+.+..- +..+.+|+.....  ......... ..|.-.+.|.++||+++++|+|..||.|.+|.--....  
T Consensus       166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~--~~~~~~~~~-~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--  239 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH-MCKIHIYFVPKHT--KHTSSRDIT-VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--  239 (792)
T ss_pred             EEEcCCceEEEEEE-eeeEEEEEecccc--eeeccchhh-hhhcccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence            45666666555444 3457788876422  111111111 12777899999999999999999999999997332100  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                  +..+..++.     -|...|.+++|+  |.+|++|+ .|.+.+|.+.+++ .+-+..-.+.|..+.++
T Consensus       240 ------------~~~t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS  301 (792)
T KOG1963|consen  240 ------------DSETCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS  301 (792)
T ss_pred             ------------ccccceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence                        011111222     388899999999  99999999 8999999999988 45556677899999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeec-----------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      ||+ ..+....|..|.+....+.....++.+           ..+-.+.+.++|.-+.++..+..|.|.+||+-+.+.+.
T Consensus       302 ~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~  381 (792)
T KOG1963|consen  302 PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY  381 (792)
T ss_pred             CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceee
Confidence            999 888888899999887755443333322           23456778899977788889999999999998876554


Q ss_pred             ceeeeeeeeccCC----CCCCeEEEEEecCCcEEEEE---e------cC--cEEEEeCCCCc----eeeeecCCCCCCCe
Q 006126          493 SKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI---H------EG--QIDVYEAPTLN----HTSQLVPDKMDLPI  553 (660)
Q Consensus       493 ~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~---~------d~--~i~iwd~~~~~----~~~~~~~~~~~~~v  553 (660)
                      ...+-  ...+.+    ..-.++.++.+..|.++++.   .      ||  .+++|-.....    +...+.. .|...+
T Consensus       382 ~~~v~--~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~-PH~~~~  458 (792)
T KOG1963|consen  382 KLQVC--DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN-PHGNAF  458 (792)
T ss_pred             eEEEE--eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec-CCCcee
Confidence            33222  111111    00246778888889999873   1      22  47888764322    2223332 466666


Q ss_pred             EEEEEc-cCCC-EEEEEecCCeEEEEECCCCee------EEEeecccccCCCC-cCcccceEEEEEecCCCCEEEEEeCC
Q 006126          554 TYATYS-CDGK-CIYVSCKSGHVKVFDTSTLEL------RCQINLTAYAQPGT-ISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       554 ~~~~~s-~dg~-~l~sg~~dg~I~iwd~~~~~~------~~~~~~~~~~~~gh-~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                      ...++. +... .+++++.||.++||-+...+-      .+.....     |+ +..+  +++.+|+. ||..| +++.|
T Consensus       459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-----~sy~k~~--i~a~~fs~-dGsll-a~s~~  529 (792)
T KOG1963|consen  459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-----GSYHKTP--ITALCFSQ-DGSLL-AVSFD  529 (792)
T ss_pred             EEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-----eccccCc--ccchhhcC-CCcEE-EEecC
Confidence            666654 3333 899999999999999843221      1111110     11 1223  44899999 88555 55678


Q ss_pred             CeEEEEeCCCC
Q 006126          625 GRVHVIEPLES  635 (660)
Q Consensus       625 g~v~iw~~~~~  635 (660)
                      ++|.|||..+.
T Consensus       530 ~~Itiwd~~~~  540 (792)
T KOG1963|consen  530 DTITIWDYDTK  540 (792)
T ss_pred             CEEEEecCCCh
Confidence            89999999884

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=1.8e-15  Score=159.65  Aligned_cols=265  Identities=15%  Similarity=0.192  Sum_probs=184.6

Q ss_pred             CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCC
Q 006126          284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS  362 (660)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  362 (660)
                      +.+.+|++.....+..  .  +.   -...|.|+.|+|.. ..++.|..+|.|.+||+..+....              .
T Consensus       222 ~~~~vW~~~~p~~Pe~--~--~~---~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------~  280 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPEL--V--LE---SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------P  280 (555)
T ss_pred             ceEEEEecCCCCCceE--E--Ee---cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------------C
Confidence            4789999986322221  1  22   37899999999955 566667779999999998776411              1


Q ss_pred             CCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEECCCCeEE------EEEc------CCCCCeEEEEEcC
Q 006126          363 SKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTL------ATFA------NPPPIATYFILLP  425 (660)
Q Consensus       363 ~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~~~~~~~------~~~~------~~~~~v~~v~~sp  425 (660)
                      ++...   ....|..+|+.+.|.    +.-+++++ ||.|..|+++.-...      ....      .....+++++|.+
T Consensus       281 s~ls~---~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~  357 (555)
T KOG1587|consen  281 SGLSA---LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP  357 (555)
T ss_pred             ccccc---ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence            11111   111599999999998    44577777 999999988643221      1111      2234678999999


Q ss_pred             CC--eEEEEeCCCeEEEEeCCC---Cc-----eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126          426 QD--LFAFGFDDSSILVHCPCT---KK-----TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       426 ~~--~l~s~~~d~~I~iwd~~~---~~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  495 (660)
                      ..  .+++|+.+|.|..-+...   +.     ....+..|.++|+++.++|=+..++..+.|.++++|.....    ..+
T Consensus       358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~----~~P  433 (555)
T KOG1587|consen  358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI----ASP  433 (555)
T ss_pred             CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----CCc
Confidence            87  999999999988744322   21     12345568899999999996655554445999999988731    233


Q ss_pred             eeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126          496 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                      +. ....+.   ..+++++|||....+.+ . .+|.|.+||+...  .++.+...  +....+.+.|+++|+.|++|...
T Consensus       434 l~-~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~  507 (555)
T KOG1587|consen  434 LL-SLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDAN  507 (555)
T ss_pred             ch-hhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCC
Confidence            33 233333   46999999998776665 4 7899999998753  34444433  25667778889999999999999


Q ss_pred             CeEEEEECCCC
Q 006126          572 GHVKVFDTSTL  582 (660)
Q Consensus       572 g~I~iwd~~~~  582 (660)
                      |.+++|++...
T Consensus       508 G~~~~~~l~~~  518 (555)
T KOG1587|consen  508 GTTHILKLSES  518 (555)
T ss_pred             CcEEEEEcCch
Confidence            99999999643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=1.1e-14  Score=139.26  Aligned_cols=239  Identities=15%  Similarity=0.159  Sum_probs=171.9

Q ss_pred             CCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE
Q 006126          375 PKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK  451 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~  451 (660)
                      ....+..+.|+  ...|..|+..-.++|.................|.-+-|+..= .|+....-+.+++++.+.+..+..
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence            34456667788  445555555556777776544322222223334445555443 333332334699999988877776


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec--cCCCCCCeEEEEEecCCcEEEE-E--e
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLS-I--H  526 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~-~--~  526 (660)
                      +. ....|.++.++.  ++|+++-.+ .|+|||+++-     +.++++..-  +.   ..+..+.+++.+.+++. +  .
T Consensus        84 ~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M-----klLhTI~t~~~n~---~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   84 IF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM-----KLLHTIETTPPNP---KGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             Ee-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc-----eeehhhhccCCCc---cceEeeccCCCCceEEecCCCC
Confidence            65 567899998864  456665544 4999999993     344433322  21   35677777777889998 4  5


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe-EEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELYP  605 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~  605 (660)
                      .|.|.+||+.+.+.+..+.  .|.+++.+++|+++|.+||++++.|+ ||||.+.+|+.+..+.-      |.  ..+.+
T Consensus       152 ~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G~--~~~~I  221 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------GT--YPVSI  221 (391)
T ss_pred             CceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------Cc--eeeEE
Confidence            6899999999999988886  48999999999999999999999986 79999999999988863      42  24556


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          606 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .+++|+| ++.+|++.|+.++|+||++....
T Consensus       222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            6999999 89999999999999999998754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=6.9e-16  Score=153.29  Aligned_cols=264  Identities=10%  Similarity=0.088  Sum_probs=178.8

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----  385 (660)
                      |...|.|+.|+.+...+.+++.+..+.-|++.+..........+           . +...   -|..   ...-.    
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-----------f-~pt~---~h~~---~rs~~~g~~   74 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-----------F-VPTD---MHLG---GRSSGGGKG   74 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-----------c-CCcc---cccc---ccccCCCCC
Confidence            78889999999888765555444444444444333211100000           0 0000   1100   00011    


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      .+.++.++ ||.+.+.+- .++..+.+..|.+.+.+-.|+||| -|++++.||.|++|. ++|-...++.....+|.|++
T Consensus        75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence            23445555 999988874 467777888999999999999999 999999999999998 56766666666778999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~  542 (660)
                      |.|+.+.++.+. .+.+.+=.+...    ...++  ...|+   +-|.++.|++....+++ |.|-..++||. -|..+.
T Consensus       153 W~p~S~~vl~c~-g~h~~IKpL~~n----~k~i~--WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf  221 (737)
T KOG1524|consen  153 WAPNSNSIVFCQ-GGHISIKPLAAN----SKIIR--WRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLF  221 (737)
T ss_pred             ECCCCCceEEec-CCeEEEeecccc----cceeE--EeccC---cEEEEeecCccccceeecCCceeEEeecc-cCcccc
Confidence            999887766544 344555444431    23443  56777   79999999999999999 58999999998 466554


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .-.  .|..+|++++|.|+ +.++.|+. +..|+=..+                   .+.  +..++||| ||..++.|+
T Consensus       222 ~S~--~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~-------------------~GS--ifnlsWS~-DGTQ~a~gt  275 (737)
T KOG1524|consen  222 TSA--AEEYAITSVAFNPE-KDYLLWSY-NTARFSSPR-------------------VGS--IFNLSWSA-DGTQATCGT  275 (737)
T ss_pred             cCC--hhccceeeeeeccc-cceeeeee-eeeeecCCC-------------------ccc--eEEEEEcC-CCceeeccc
Confidence            443  47999999999999 55555543 334411111                   222  34899999 899999999


Q ss_pred             CCCeEEEE
Q 006126          623 TNGRVHVI  630 (660)
Q Consensus       623 ~Dg~v~iw  630 (660)
                      ..|.|.+=
T Consensus       276 ~~G~v~~A  283 (737)
T KOG1524|consen  276 STGQLIVA  283 (737)
T ss_pred             cCceEEEe
Confidence            99987663

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=7.7e-17  Score=167.65  Aligned_cols=275  Identities=11%  Similarity=0.104  Sum_probs=209.2

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ||.+.|.|+.|...|.++++|+.|..++||..++..+                     ....  .||.+.++.++.+  +
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---------------------lAs~--rGhs~ditdlavs~~n  244 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---------------------LASC--RGHSGDITDLAVSSNN  244 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhh---------------------hccC--CCCccccchhccchhh
Confidence            5999999999999999999999999999998766544                     2111  1899999999999  5


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeE---ee-ccCCCeEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK---LK-GHQNRITC  461 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~---~~-~~~~~v~~  461 (660)
                      -++++++ |..|++|.+.++.++..+.+|.+.|++++|+|-   .+.+.||++++||.+-...+..   +. .....+.+
T Consensus       245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s  321 (1113)
T KOG0644|consen  245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS  321 (1113)
T ss_pred             hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEeccccccccccCCCCCCcccccceee
Confidence            5778888 999999999999999999999999999999995   4788999999999871111111   11 12355677


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEEE-ecCcEEEEeCCCCc
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLN  539 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~-~d~~i~iwd~~~~~  539 (660)
                      +.|..++..+++++.|+.-..|.+..-.            .+.   ..+.-+.++.+- .+.+++ .+-.+++|++.+|.
T Consensus       322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~---~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~  386 (1113)
T KOG0644|consen  322 ILFENNGDRFLTGSRDGEARNHEFEQLA------------WRS---NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ  386 (1113)
T ss_pred             eeccccccccccccCCcccccchhhHhh------------hhc---cceEEEeccccccccceeeeeeeEeeeeecccch
Confidence            7888888999999999998888765411            111   111122222232 334444 77889999999998


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI  618 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l  618 (660)
                      ......+  |...+..+.++|-.. ...+++.||...|||+-.|.+++....      || ..   ....+||+ ||..+
T Consensus       387 l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~------gh-~k---l~d~kFSq-dgts~  453 (1113)
T KOG0644|consen  387 LLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI------GH-GK---LVDGKFSQ-DGTSI  453 (1113)
T ss_pred             hhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec------cc-ce---eeccccCC-CCceE
Confidence            8877765  688899999998655 455889999999999999988877652      33 22   33789999 89999


Q ss_pred             EEEeCCCeEEEEeCCCCce
Q 006126          619 ALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       619 ~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +...+-|.+.|.....++.
T Consensus       454 ~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  454 ALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             ecCCCCCceEEeccCCCcc
Confidence            8887779999987766543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=2.9e-17  Score=170.73  Aligned_cols=236  Identities=22%  Similarity=0.273  Sum_probs=186.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK  449 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~  449 (660)
                      +|...|+|+.|.  |.++++|+ |..++||.++++.+.....+|.+.|+.++.+.++ .+++++.|..|++|-+.++.++
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence            799999999999  99999999 7899999999999999999999999999999999 9999999999999999999999


Q ss_pred             eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126          450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE  527 (660)
Q Consensus       450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d  527 (660)
                      ..+.+|++.|++++|+|-.    +.+.||++++||.+-... ....++.  +.+.    .-+.++.|..++..+++ +.|
T Consensus       268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~--~~~~----~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK--FTEK----DLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC--cccc----cceeeeeccccccccccccCC
Confidence            9999999999999999954    778899999999982111 0011111  1111    35777888888888888 477


Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                      +.-..|.+.....        +...+.-+.++.|- .+.+++-.+-.+.+|++.+|.+...+.       || .+.++  
T Consensus       338 ~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-------gh-sd~~y--  399 (1113)
T KOG0644|consen  338 GEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-------GH-SDEVY--  399 (1113)
T ss_pred             cccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-------cc-cccee--
Confidence            8777776542111        11222222222222 466677778889999999998887765       44 55677  


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          607 VIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      .+.+||-+.....+++.||...|||+-.|-+
T Consensus       400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP  430 (1113)
T ss_pred             eeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence            7899998777888999999999999987754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.9e-15  Score=142.45  Aligned_cols=291  Identities=10%  Similarity=0.047  Sum_probs=204.6

Q ss_pred             cCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEe
Q 006126          260 NDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  339 (660)
Q Consensus       260 ~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~  339 (660)
                      ....|..++.||.++++||+|+.|..+++|+++........+.+.+.++.|.+.|.|++|....+++.+|+.+++|..-|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            34456667799999999999999999999999743222222334455666889999999999999999999999999988


Q ss_pred             ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe-EEE--EEcC
Q 006126          340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLA--TFAN  413 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~-~~~--~~~~  413 (660)
                      +++.+..          .++..           +...+.|+.+..+  .+.|++.+ ++.|.+||..... ...  ....
T Consensus       134 iEt~qsi----------~V~~~-----------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  134 IETKQSI----------YVANE-----------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             cccceee----------eeecc-----------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence            8776541          11111           1234588888888  78888888 8999999997644 221  2224


Q ss_pred             CCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce-eeE---eec---cCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126          414 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAK---LKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWD  484 (660)
Q Consensus       414 ~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~-~~~---~~~---~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd  484 (660)
                      .......+.|+|..  +|++.+..+-+-+||.+..+. +..   +.+   ....-.++.|+|+|+.+++--....-.+||
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD  272 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence            45667889999988  889999999999999875422 111   111   122235678999999998876666666788


Q ss_pred             cCCCeeeeceeeeeeeeccCCC----CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC----c----------------
Q 006126          485 AVGWKKLCSKFLHSFQTGLVPE----TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----N----------------  539 (660)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~----~----------------  539 (660)
                      +-+..+   ..   +...|.+.    ...+.+++|..|-. +++| .+-.|++|.+...    .                
T Consensus       273 ~~S~R~---~V---~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~  345 (609)
T KOG4227|consen  273 FISQRC---FV---LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF  345 (609)
T ss_pred             eecccc---ee---EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence            876321   11   12222210    13466788876654 6665 5568999987531    1                


Q ss_pred             ---eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          540 ---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       540 ---~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                         .+..+.  +|...+..+.|+|...+|++.+-...++||.-.
T Consensus       346 i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  346 IEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ecceeEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence               112232  368888999999999999999999999999754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=8.7e-15  Score=154.53  Aligned_cols=246  Identities=13%  Similarity=0.081  Sum_probs=174.1

Q ss_pred             CCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeE--EEE----EcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEE
Q 006126          375 PKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT--LAT----FANPPPIATYFILLPQD---LFAFGFDDSSILVH  441 (660)
Q Consensus       375 h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~--~~~----~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iw  441 (660)
                      -...|.|++|+   ..+++.|. +|+|.+||+..+..  ...    ...|..+++.+.|..+-   -|++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            57789999999   66777777 89999999987655  222    23688899999997765   59999999999999


Q ss_pred             eCCCCce-e-----eEee------ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEc---CCCeeeeceeeeeeeeccCC
Q 006126          442 CPCTKKT-K-----AKLK------GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDA---VGWKKLCSKFLHSFQTGLVP  505 (660)
Q Consensus       442 d~~~~~~-~-----~~~~------~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~~  505 (660)
                      +++.-.. .     ....      .-...+++++|.+ +-..+++|+.+|.|..=+.   +........... ....|. 
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~-~~~~h~-  398 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS-TFITHI-  398 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc-cccccC-
Confidence            8764322 1     1111      1234688999988 4567899999999877333   221111111121 233444 


Q ss_pred             CCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-CCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCC
Q 006126          506 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       506 ~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~  582 (660)
                        +.|+++.++|-+..++. +.|.+++||... ...++..+..  +...+++++|||.. ..++++..||.|.|||+...
T Consensus       399 --g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  399 --GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             --cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence              79999999998776665 679999999987 5666655543  46679999999976 46777778999999999754


Q ss_pred             eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ..........    +  ....+  .+.|++ .|..|++|...|++++|++...
T Consensus       475 ~~~Pv~s~~~----~--~~~l~--~~~~s~-~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  475 DEEPVLSQKV----C--SPALT--RVRWSP-NGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccCCcccccc----c--ccccc--eeecCC-CCcEEEEecCCCcEEEEEcCch
Confidence            3332222110    1  22223  788888 8999999999999999999653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3.3e-17  Score=171.05  Aligned_cols=335  Identities=12%  Similarity=0.089  Sum_probs=218.9

Q ss_pred             hhHHHHHHhhhcceeeeeeeecCCCCCcccccc-cCccccchhhhccccccCCCCCCCCccccccC----CCC---CCce
Q 006126          186 KSRLLSLIKQIMDWWVPYCINVMPNANNETISL-KDFPTVSNLRYASSILTDKPNQEGRPLDASSG----DDS---NDSS  257 (660)
Q Consensus       186 ~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~---v~~~  257 (660)
                      +-.|.+++.|+++.|+++|++++..+|...+.. |.+|.++....+..+.+-+-... .-+..|.|    ...   +++ 
T Consensus      1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~r-el~~~y~gV~g~~~dr~~IFS- 1089 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTR-ELQSFYSGVHGNRRDRQFIFS- 1089 (1516)
T ss_pred             CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccch-hhcCcccccccCcccchhhHh-
Confidence            457999999999999999999999999888777 88888888777633322211100 00000110    000   111 


Q ss_pred             eec------C-CCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE
Q 006126          258 CFN------D-NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT  330 (660)
Q Consensus       258 ~~~------~-~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s  330 (660)
                      .|-      + ......+.||-+.++|+.|+..|.|+++++..+...+...       .|.++|+.+.-+.||..+++.+
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-------cH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-------CHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-------ccccccccccccCCcceeeeec
Confidence            121      1 1223336899999999999999999999998644333322       3999999999999999888776


Q ss_pred             CCC--cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC
Q 006126          331 QTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF  405 (660)
Q Consensus       331 ~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~  405 (660)
                      .-.  ...+|+....                    +...      +.-..-.++.|+  ...-+.|. ...+.+||++++
T Consensus      1163 s~S~PlsaLW~~~s~--------------------~~~~------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------------GGPR------HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred             cccCchHHHhccccc--------------------cCcc------ccccccceeehhhhHHHHHhcccccceEEEecccC
Confidence            632  3445554321                    1111      112345678888  22223333 678899999999


Q ss_pred             eEEEEE-c---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          406 QTLATF-A---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       406 ~~~~~~-~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                      ..+.++ .   +....-+++.|+|++ +++-   ||  .+||++..+.++.|...+..+.. .|+|+|..++..+.    
T Consensus      1217 ~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINSE---- 1286 (1516)
T ss_pred             cHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeech----
Confidence            877763 2   222333788999999 6654   33  78999998888888765544444 49999999999886    


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe---c---------------CcEEEEeCCCCceee
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---E---------------GQIDVYEAPTLNHTS  542 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---d---------------~~i~iwd~~~~~~~~  542 (660)
                       |||+++..     .+++++.      -.-..+.|+..|..++...   |               ...+-+|..+.+.+.
T Consensus      1287 -IwD~RTF~-----lLh~VP~------Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~ia 1354 (1516)
T KOG1832|consen 1287 -IWDMRTFK-----LLHSVPS------LDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIA 1354 (1516)
T ss_pred             -hhhhHHHH-----HHhcCcc------ccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccce
Confidence             99999943     3332222      1234678888887765421   1               135667777777888


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEECC
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTS  580 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---------g~I~iwd~~  580 (660)
                      ++..   ...+..+|-+|...++..-...         -..++|.+-
T Consensus      1355 Ti~v---~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yEIG 1398 (1516)
T KOG1832|consen 1355 TIPV---DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYEIG 1398 (1516)
T ss_pred             eeec---ccchhhhhcCCccceEEEEeccChhhhhhhhhhhhhhhhc
Confidence            8865   6778888888888887764332         246666653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=3.1e-15  Score=138.20  Aligned_cols=243  Identities=14%  Similarity=0.177  Sum_probs=176.6

Q ss_pred             CCCCeEEEEEe-----CCEEEEEe--C---CcEEEEEC--CCCeEEEEEc-CCCCCeEEEEEcCCC------eEEEEeCC
Q 006126          375 PKDSISCFALR-----GSHLFSAS--G---GKISIFSL--ETFQTLATFA-NPPPIATYFILLPQD------LFAFGFDD  435 (660)
Q Consensus       375 h~~~v~~v~~s-----~~~l~s~~--d---g~I~iwd~--~~~~~~~~~~-~~~~~v~~v~~sp~~------~l~s~~~d  435 (660)
                      ..-.++++.|+     +.+|+.|+  +   +.|.+..+  .+++.+..-. .|..+++.+.|.|+.      +||++  +
T Consensus        43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~  120 (364)
T KOG0290|consen   43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--S  120 (364)
T ss_pred             CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--c
Confidence            34457788888     55788888  2   45666544  4455443332 678899999999975      34443  4


Q ss_pred             CeEEEEeCCCC--ce--eeEe-----eccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCC
Q 006126          436 SSILVHCPCTK--KT--KAKL-----KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP  505 (660)
Q Consensus       436 ~~I~iwd~~~~--~~--~~~~-----~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  505 (660)
                      ..+++|.+...  +.  ...+     ..+..+++++.|+. +-+++.+.|-|-+..|||+.++.   ...+++-.-.|. 
T Consensus       121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---~~~vkTQLIAHD-  196 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---SGTVKTQLIAHD-  196 (364)
T ss_pred             CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc---ccceeeEEEecC-
Confidence            47999988732  11  1111     23567899999987 66889999999999999999862   123444466777 


Q ss_pred             CCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCC-CCCeEEEEEcc-CCCEEEEEecC-CeEEEEECC
Q 006126          506 ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS  580 (660)
Q Consensus       506 ~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~-dg~~l~sg~~d-g~I~iwd~~  580 (660)
                        .+|..++|...+..+.+  |.||.+|+||++..+.-..+..... ..+...++|++ |-+++|+-..| ..|.|.|++
T Consensus       197 --KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  197 --KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             --cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence              69999999997766554  6999999999997665444333323 67888999996 55788887666 579999998


Q ss_pred             C-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          581 T-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       581 ~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      . +..+..+.       +| .+.|+  +++|.|..+..++|||+|..+.|||+...
T Consensus       275 ~P~tpva~L~-------~H-~a~VN--gIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  275 VPCTPVARLR-------NH-QASVN--GIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CCCcceehhh-------cC-ccccc--ceEecCCCCceeeecCCcceEEEEecccc
Confidence            6 44556655       44 55666  99999988899999999999999999764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.7e-14  Score=144.84  Aligned_cols=272  Identities=13%  Similarity=0.088  Sum_probs=202.1

Q ss_pred             eeeEecCCCCEE-EEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCc
Q 006126          266 RESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  344 (660)
Q Consensus       266 ~~~~~spdg~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~  344 (660)
                      ..+..||||+|+ |+|..--.|++||+..       ..++++.+.....|.-.-.+.|-..++.-..|.+|.+-.     
T Consensus        55 t~ik~s~DGqY~lAtG~YKP~ikvydlan-------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-----  122 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGTYKPQIKVYDLAN-------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-----  122 (703)
T ss_pred             ceeEecCCCcEEEEecccCCceEEEEccc-------ceeeeeecccccceeEEEeccchhhheEeecCceeeehh-----
Confidence            345889999976 5667789999999974       112244432345566666666766677777788776432     


Q ss_pred             eeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126          345 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF  421 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v  421 (660)
                                       ..|......    -...-..++++   ..+++.|+...|.-++++.|..+..+......++++
T Consensus       123 -----------------k~G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v  181 (703)
T KOG2321|consen  123 -----------------KYGRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV  181 (703)
T ss_pred             -----------------hcCeeeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceee
Confidence                             222222111    12223455565   455556668899999999999999999888999999


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec------cCC-----CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~------~~~-----~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      ..++-. +|++|+.+|.|-.||.++...+.++..      |.+     .|+++.|+.+|-.+++|+.+|.+.+||+++.+
T Consensus       182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK  261 (703)
T ss_pred             eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence            999988 999999999999999998776665532      333     39999999999999999999999999999943


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  567 (660)
                           ++.  ...|.. ..+|..+.|.+.  +..+++.....++|||-.+|+....+.+   ...+..+|+-|++-++++
T Consensus       262 -----pl~--~kdh~~-e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  262 -----PLL--VKDHGY-ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             -----cee--ecccCC-ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEE
Confidence                 333  222321 157889999775  4556666778899999999999888865   667999999999999999


Q ss_pred             EecCCeEEEEECCC
Q 006126          568 SCKSGHVKVFDTST  581 (660)
Q Consensus       568 g~~dg~I~iwd~~~  581 (660)
                      +-+++.+..|=+..
T Consensus       331 Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  331 ANESSKMHTYYIPS  344 (703)
T ss_pred             ecCCCcceeEEccc
Confidence            99988887776654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.65  E-value=8.2e-15  Score=145.77  Aligned_cols=250  Identities=17%  Similarity=0.175  Sum_probs=171.0

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEE-Eec-------CCCEEEEEECCCcEEEEec
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLI-YSH-------SGDFLVALTQTATHKLWKW  340 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~-~sp-------dg~~l~s~s~dg~i~vw~~  340 (660)
                      .|+.....+.+++.+..+.-||+..    .......++.    +-|.... .-+       ....++.++.||.+.+-+-
T Consensus        21 ~w~~~eei~~~~dDh~~~~~~~~~~----~s~~~~~~p~----df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k   92 (737)
T KOG1524|consen   21 DWSSNEEIYFVSDDHQIFKWSDVSR----DSVEVAKLPD----DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNK   92 (737)
T ss_pred             cccccceEEEeccCceEEEeecccc----hhhhhhhCCc----ccCCccccccccccCCCCCcceEEEEcCCceEEEecc
Confidence            5666666666665556666666653    3333333332    1111111 111       2246788888888876542


Q ss_pred             cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126          341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI  417 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~  417 (660)
                                            .+++....  ..|.+.+.+-.|+  |.-|++++ ||.|++|.- +|....++.....+
T Consensus        93 ----------------------~~rVE~sv--~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   93 ----------------------SARVERSI--SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEES  147 (737)
T ss_pred             ----------------------cchhhhhh--hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCce
Confidence                                  22221111  1699999999999  77888888 999999984 45555556667788


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126          418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      |+|++|.|+. .++.+- .+.+.|=.+.....+-.++.|.+-|.++.|++..+.+++|+.|-..++||-..      ..+
T Consensus       148 v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G------~~L  220 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG------ANL  220 (737)
T ss_pred             eEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC------ccc
Confidence            9999999999 444333 33455555555566778899999999999999999999999999999999876      233


Q ss_pred             eeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 006126          497 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV  576 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~i  576 (660)
                      . ....|.   .+|++++|.|+ +.++.++-++++            +.. ...+.|..++||+||..+++|+..|.+.+
T Consensus       221 f-~S~~~e---y~ITSva~npd-~~~~v~S~nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  221 F-TSAAEE---YAITSVAFNPE-KDYLLWSYNTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             c-cCChhc---cceeeeeeccc-cceeeeeeeeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence            3 234455   68999999999 555554444444            222 13788999999999999999999987754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.9e-15  Score=145.77  Aligned_cols=198  Identities=17%  Similarity=0.120  Sum_probs=150.1

Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  497 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  497 (660)
                      .+++|+++| .+++|+.||++|+|+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP-  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence            689999999 99999999999999977777777777899999999999999999999999 999999999743322211 


Q ss_pred             eeeeccCCCCCCeEEEEEecCC---cE-EEEE--ecCcEEEEeCCCCce---eeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126          498 SFQTGLVPETTIVNHIQFHPDQ---IH-LLSI--HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       498 ~~~~~~~~~~~~v~~~~~sp~~---~~-l~~~--~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg  568 (660)
                         .+..   .....+.|+.|+   .+ +++.  ..+.|+.||+...+.   .+..+.-.....|.+++.|+||++++.|
T Consensus       226 ---~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  226 ---FSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             ---cccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence               1111   356678888776   32 3332  446677777643221   1111111125689999999999999999


Q ss_pred             ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          569 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       569 ~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +.||.|-|++..+.+.+...+.         .+...++.+.|+| |.+++++.+.|....|..+.-
T Consensus       300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence            9999999999998887766542         2234567999999 899999999999999988754

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.2e-13  Score=129.81  Aligned_cols=283  Identities=17%  Similarity=0.172  Sum_probs=186.7

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CC
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS  387 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~  387 (660)
                      ...+..++|++.-..+|++..|-.|++|+-.....                   ..++.    ..+..|+|++|.   +.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-------------------t~Lks----~sQrnvtclawRPlsas  154 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-------------------TKLKS----VSQRNVTCLAWRPLSAS  154 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-------------------ceecc----hhhcceeEEEeccCCcc
Confidence            45678899999767788999999999887543211                   11111    246779999999   77


Q ss_pred             EEEEEeCCcEEEEECCC----CeEE--------EEEc-CCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeEe
Q 006126          388 HLFSASGGKISIFSLET----FQTL--------ATFA-NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       388 ~l~s~~dg~I~iwd~~~----~~~~--------~~~~-~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~~  452 (660)
                      .|+.|+.+-|.+|....    +..+        +.++ .....|+++.|++|| .+++++ .|..|.|||+.++..+...
T Consensus       155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~  234 (445)
T KOG2139|consen  155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI  234 (445)
T ss_pred             eeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence            89999999999998753    1111        1122 122679999999999 888777 4668999999999877655


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEE
Q 006126          453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID  531 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~  531 (660)
                      ....+.++-+.|||||.+|++++-|+..++|.. +++...+...      +.    +.|...+|+|+|++|+.+..+.=+
T Consensus       235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l------gs----grvqtacWspcGsfLLf~~sgsp~  304 (445)
T KOG2139|consen  235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL------GS----GRVQTACWSPCGSFLLFACSGSPR  304 (445)
T ss_pred             ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec------cC----CceeeeeecCCCCEEEEEEcCCce
Confidence            445678899999999999999999999999954 4433221111      11    579999999999999875555545


Q ss_pred             EEeCCC-Cce--------------eeee------cCC-CCCCCeEEEEEccCCCEEEEEecCC--------eEEEEECCC
Q 006126          532 VYEAPT-LNH--------------TSQL------VPD-KMDLPITYATYSCDGKCIYVSCKSG--------HVKVFDTST  581 (660)
Q Consensus       532 iwd~~~-~~~--------------~~~~------~~~-~~~~~v~~~~~s~dg~~l~sg~~dg--------~I~iwd~~~  581 (660)
                      +|.+.- ++.              +..+      .+. --.+.+.+++|+|.|.+||+.-..+        .|.+||.+.
T Consensus       305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            555421 100              0000      000 0146788999999999999865543        466788765


Q ss_pred             CeeEEEeecccccCCCCcCcccceEEEEEecC--CCCEEEEEeCCCeEEEEeCC
Q 006126          582 LELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~--d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .-....... . ...|  ..+.   -++|+|.  ++.+|..+=..|.+.-|.+.
T Consensus       385 sp~vels~c-g-~i~g--e~P~---~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  385 SPPVELSYC-G-MIGG--EYPA---YISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCceEEEec-c-cccC--CCCc---eEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            543332211 1 1112  1222   3555553  45567777677877777653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.8e-14  Score=151.78  Aligned_cols=206  Identities=17%  Similarity=0.099  Sum_probs=143.2

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCC
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSL  468 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~  468 (660)
                      ..|.+||..... .+.+..+...+.+..|+||| .|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+|||
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG  259 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG  259 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC
Confidence            589999986544 55667777889999999999 77776643   3799999988754  3333333   3468999999


Q ss_pred             CEEEEEe-CCCcEEEE--EcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC-Cceee
Q 006126          469 NVLVSSG-ADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-LNHTS  542 (660)
Q Consensus       469 ~~l~s~s-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~-~~~~~  542 (660)
                      +.|+.++ .+|.+.+|  |+.++..      . ....+.   ..+....|+|||+.|+. + .++...||++.. +....
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~------~-~lt~~~---~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~  329 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTP------S-QLTSGA---GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS  329 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCe------E-eeccCC---CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            9888765 67765555  6655331      1 122233   45778999999998886 4 567777777643 22222


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .+ .  +..  ....|+|||++|+.++.++ +.+||+.+++......       ++   ...  .++|+| ||++|+.++
T Consensus       330 ~l-~--~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------~~---~~~--~~~~sP-dG~~i~~~s  390 (429)
T PRK01742        330 LV-G--GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-------TF---LDE--SPSISP-NGIMIIYSS  390 (429)
T ss_pred             Ee-c--CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------CC---CCC--CceECC-CCCEEEEEE
Confidence            23 2  222  4578999999999887765 5669999887543221       11   112  678999 899999999


Q ss_pred             CCCeEEEEeCC
Q 006126          623 TNGRVHVIEPL  633 (660)
Q Consensus       623 ~Dg~v~iw~~~  633 (660)
                      .+|.+.+|.+.
T Consensus       391 ~~g~~~~l~~~  401 (429)
T PRK01742        391 TQGLGKVLQLV  401 (429)
T ss_pred             cCCCceEEEEE
Confidence            99999888864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1.7e-13  Score=128.67  Aligned_cols=238  Identities=15%  Similarity=0.224  Sum_probs=164.1

Q ss_pred             eEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCC-eEEEEeCC------CeEEEEeCCCCc
Q 006126          379 ISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFDD------SSILVHCPCTKK  447 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v--~~v~~sp~~-~l~s~~~d------~~I~iwd~~~~~  447 (660)
                      ..+++|+  ..-++++.|.-.++|+.+..+.....+.+..++  .-+-| ..+ ..++||.+      ..|.|||=...+
T Consensus         8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            4458888  456666678889999987644322222222222  22222 233 44555554      379999977777


Q ss_pred             eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-
Q 006126          448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-  525 (660)
Q Consensus       448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-  525 (660)
                      ++.++. ...+|.++.+.++  .+++. ..+.|+||...+.-    +.+..+.....|  ....+++-+.+..+|+. | 
T Consensus        87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~----k~l~~~et~~NP--kGlC~~~~~~~k~~LafPg~  156 (346)
T KOG2111|consen   87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP----KLLHVIETRSNP--KGLCSLCPTSNKSLLAFPGF  156 (346)
T ss_pred             EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh----hheeeeecccCC--CceEeecCCCCceEEEcCCC
Confidence            777776 6788999999764  44444 47899999987421    112211111112  34555555555666666 6 


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe-EEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                      .-|.|.|-|+...+.-.......|...|.+++++-+|..+|+++..|+ |||||..+|+++.++.-      |.....++
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~iy  230 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRADIY  230 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchheEE
Confidence            669999999976554212222358999999999999999999999997 79999999999999863      54445566


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                        +++||| +..+||++|+-|+|+|+.+....
T Consensus       231 --~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  231 --CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             --EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence              999999 89999999999999999987643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=5e-15  Score=144.12  Aligned_cols=196  Identities=15%  Similarity=0.123  Sum_probs=155.5

Q ss_pred             EEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-
Q 006126          380 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-  454 (660)
Q Consensus       380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-  454 (660)
                      .+++|+  |..+++++ ||++|+|+..+...+.....|...|.++.|+||| .|++-+.| ..+||+.++|..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            678888  78999999 9999999988888888888999999999999999 99999999 999999999977665542 


Q ss_pred             -cCCCeEEEEEeCCC---C--EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126          455 -HQNRITCLAYSLSL---N--VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  527 (660)
Q Consensus       455 -~~~~v~~l~~sp~~---~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d  527 (660)
                       .......+.|+.|+   .  .++....-+.|+.||+..+.........+....+    ..|++++.++||++++.| .|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence             23445677888776   3  3333444577888888765432112222222333    379999999999999995 99


Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      |.|-|++..+.+.++-.+. .|...|+.+.|+||.+++++.+.|....|..+.-
T Consensus       303 GsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999998888766654 6899999999999999999999998888887654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=5.5e-15  Score=145.71  Aligned_cols=294  Identities=14%  Similarity=0.064  Sum_probs=214.9

Q ss_pred             CCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC--CCEEEEEECCCcEEEE
Q 006126          261 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLW  338 (660)
Q Consensus       261 ~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd--g~~l~s~s~dg~i~vw  338 (660)
                      .+.|...+.|...|..|++|+.|..|.+||+..+   ....  .++ .||...|....|-|.  .+.+++++.||.+++=
T Consensus       141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~---~~~l--~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG---SPKL--SFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             CCCccceeeecccCceeeccCccceEEeehhhcc---Cccc--ccc-cccccchhhhhccCCCCCcCceeccccCceeee
Confidence            4456667799999999999999999999999742   2222  233 469999999999883  3678999999999875


Q ss_pred             eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEc--
Q 006126          339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA--  412 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~--  412 (660)
                      .+...+                    .+..+.....|.++|..++..   ..-|.+++ |+.+.-+|+.++.....+.  
T Consensus       215 ~i~~t~--------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  215 EILETG--------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             eecccc--------------------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence            543322                    222111222588999998887   55677777 9999999998765544332  


Q ss_pred             -CCCC---CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce------eeEeec------cCCCeEEEEEeCCCCEEEEE
Q 006126          413 -NPPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKKT------KAKLKG------HQNRITCLAYSLSLNVLVSS  474 (660)
Q Consensus       413 -~~~~---~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~------~~~~~~------~~~~v~~l~~sp~~~~l~s~  474 (660)
                       .+..   ....++..|.+  .+++|+.|..+++||.+.-..      +.++..      ....|+|++|+.++.-|.+.
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence             2333   45788999988  999999999999999764321      223322      23578999999888888888


Q ss_pred             eCCCcEEEEEcCCCee-------eeceeeeeeeeccCCCCCCeEEEEE-ecCCcEEEEEec-CcEEEEeCCCCceeeeec
Q 006126          475 GADAQLCVWDAVGWKK-------LCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHE-GQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       475 s~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~d-~~i~iwd~~~~~~~~~~~  545 (660)
                      ..|-.|+++.-.-+..       .....++..+.||.+. ..|..+-| -|...|+++|.| |.|.||+-.+++.++.+.
T Consensus       355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me  433 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME  433 (559)
T ss_pred             ecccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence            8899999994433221       0012333346788642 34666765 577888888765 899999999999999888


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      +..  ..|.|+.=+|--..||+++-|..|+||-..+.+
T Consensus       434 gDr--~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  434 GDR--HVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             ccc--ceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            754  389999999999999999999999999885544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.62  E-value=6.4e-14  Score=131.67  Aligned_cols=272  Identities=14%  Similarity=0.120  Sum_probs=182.0

Q ss_pred             EEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-
Q 006126          316 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-  392 (660)
Q Consensus       316 ~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-  392 (660)
                      -+.|||+|+|+|+++.- .+.|-|.                     .+-++.+.+.   --+.|..+.|.  ..+++++ 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~---------------------~tlq~~qlf~---cldki~yieW~ads~~ilC~~   67 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDS---------------------ETLQLHQLFL---CLDKIVYIEWKADSCHILCVA   67 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEecc---------------------chhhHHHHHH---HHHHhhheeeeccceeeeeee
Confidence            56899999999999865 4444433                     3322222211   12446677888  3444444 


Q ss_pred             e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC
Q 006126          393 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN  469 (660)
Q Consensus       393 ~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~  469 (660)
                      . ++.|.+|++...+-...+.....++.++.|+|||  .+.+...|-.|.+|.+.+.+... +.-.+..+..++|+|||+
T Consensus        68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~  146 (447)
T KOG4497|consen   68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ  146 (447)
T ss_pred             eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence            4 8999999999999888999999999999999999  67778889999999998765543 222344568888999998


Q ss_pred             EEEEEeCC------------------------------------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126          470 VLVSSGAD------------------------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI  513 (660)
Q Consensus       470 ~l~s~s~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  513 (660)
                      +.+.++.-                                    ..+.+||---.     ..+   ..-|..  -.+..+
T Consensus       147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-----ykv---~aYe~~--lG~k~v  216 (447)
T KOG4497|consen  147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-----YKV---YAYERG--LGLKFV  216 (447)
T ss_pred             eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-----hee---eeeeec--cceeEE
Confidence            87765431                                    12333432110     010   111111  368889


Q ss_pred             EEecCCcEEEEE-ecCcEEEEeCCCCceeee-------------------------------------------------
Q 006126          514 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ-------------------------------------------------  543 (660)
Q Consensus       514 ~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~-------------------------------------------------  543 (660)
                      +|+|.++++++| .|+.+++.+--+-+....                                                 
T Consensus       217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y  296 (447)
T KOG4497|consen  217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY  296 (447)
T ss_pred             EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence            999999999995 898888765221111000                                                 


Q ss_pred             -----------ecCC----CCCCCeEEEEEccCCCEEEEEecC--CeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126          544 -----------LVPD----KMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       544 -----------~~~~----~~~~~v~~~~~s~dg~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                                 +++.    .....+--++|++|..++++-.+.  +.+-+||++..++...+..         .+++.  
T Consensus       297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---------k~pir--  365 (447)
T KOG4497|consen  297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---------KHPIR--  365 (447)
T ss_pred             hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---------cccee--
Confidence                       0000    012345568999999999987553  7899999998877666543         34555  


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          607 VIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      .+.|+| ....|+.+.....+++|.+.-.
T Consensus       366 af~WdP-~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             EEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence            899999 5667777777778999998753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=1.7e-12  Score=133.62  Aligned_cols=318  Identities=14%  Similarity=0.126  Sum_probs=193.3

Q ss_pred             EEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEE
Q 006126          278 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ  357 (660)
Q Consensus       278 ~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~  357 (660)
                      ++-..+|.|.+.|..+   ......  ++.  ....-..+.|+|||+++++++.||.|.++|+.+.+.            
T Consensus        10 V~~~~~~~v~viD~~t---~~~~~~--i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~------------   70 (369)
T PF02239_consen   10 VVERGSGSVAVIDGAT---NKVVAR--IPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV------------   70 (369)
T ss_dssp             EEEGGGTEEEEEETTT----SEEEE--EE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE------------
T ss_pred             EEecCCCEEEEEECCC---CeEEEE--EcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE------------
Confidence            4566789999999874   222333  322  122234578999999999999999999988877654            


Q ss_pred             EecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcC-------CCCCeEEEEEcCC
Q 006126          358 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN-------PPPIATYFILLPQ  426 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~-------~~~~v~~v~~sp~  426 (660)
                               +....   -.....+++++  |+++++++  .+.+.++|.++.+.++.+..       ....+..+..+|.
T Consensus        71 ---------v~~i~---~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~  138 (369)
T PF02239_consen   71 ---------VATIK---VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG  138 (369)
T ss_dssp             ---------EEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred             ---------EEEEe---cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence                     22111   23346788888  88988887  79999999999999988753       2346778888888


Q ss_pred             C-eEEEEeC-CCeEEEEeCCCCceee-EeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          427 D-LFAFGFD-DSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       427 ~-~l~s~~~-d~~I~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      . .++..-. .+.|.+.|....+.+. .............|+|++++++.+ ..+..|-++|.++++.....     ..+
T Consensus       139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i-----~~g  213 (369)
T PF02239_consen  139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI-----DTG  213 (369)
T ss_dssp             SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE-----E-S
T ss_pred             CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe-----ecc
Confidence            8 5555544 5788888977654432 222244567788999999987664 45678999999986543321     112


Q ss_pred             cCCCCCCeEEE-------EEe--cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE----
Q 006126          503 LVPETTIVNHI-------QFH--PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS----  568 (660)
Q Consensus       503 ~~~~~~~v~~~-------~~s--p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg----  568 (660)
                      ..+....+..+       .|.  ..+...++ -....+.+||..+.+.++++...  ..+ ..+..+|+++++.+.    
T Consensus       214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--G~g-lFi~thP~s~~vwvd~~~~  290 (369)
T PF02239_consen  214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--GGG-LFIKTHPDSRYVWVDTFLN  290 (369)
T ss_dssp             SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--SSS---EE--TT-SEEEEE-TT-
T ss_pred             ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--CCc-ceeecCCCCccEEeeccCC
Confidence            11111222222       121  12223322 24446678999999999999763  344 678889999999987    


Q ss_pred             ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe--CCCeEEEEeCCCCceeccCCCC
Q 006126          569 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       569 ~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s--~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      ...+.|.++|.++.+....+...         ....+..+.|++ ||..+-.+.  .+|.|.|||..+.+.+-..+.+
T Consensus       291 ~~~~~v~viD~~tl~~~~~i~~~---------~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~  358 (369)
T PF02239_consen  291 PDADTVQVIDKKTLKVVKTITPG---------PGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVP  358 (369)
T ss_dssp             SSHT-EEEEECCGTEEEE-HHHH---------HT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE--
T ss_pred             CCCceEEEEECcCcceeEEEecc---------CCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEEee
Confidence            44589999999999877776532         112255899999 788654433  3347999999998875444433

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3.2e-13  Score=128.70  Aligned_cols=299  Identities=11%  Similarity=0.068  Sum_probs=184.2

Q ss_pred             CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126          264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      +.+.++|++.-.-+|++..|-.|+||+-.. +.+..++.      .-...|.|++|-|.+..-++.+--+-|.+|.....
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~gIciW~~s~t  172 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRT  172 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecceeEEEEcCcc
Confidence            334457888777888999999999999864 11111221      13678999999997644444444567889987643


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIAT  419 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~  419 (660)
                      .....      .++.-....+++.+   ..|| .+|+++.|.  |..+++++  |..|.|||+.++.++.......+.++
T Consensus       173 ln~~r------~~~~~s~~~~qvl~---~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s  242 (445)
T KOG2139|consen  173 LNANR------NIRMMSTHHLQVLQ---DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS  242 (445)
T ss_pred             ccccc------ccccccccchhhee---CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence            22000      00000001111111   1245 789999999  88999998  68999999999988776656667888


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe----ee---
Q 006126          420 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK----KL---  491 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~----~~---  491 (660)
                      -+.||||| +|++++-|+..++|+.........+.-..+.|....|+|+|++|+.... |.-++|.+....    ..   
T Consensus       243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             eEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence            99999999 9999999999999964433222333334568999999999998766543 333344432211    00   


Q ss_pred             ---eceeee-----eeeeccCCCCCCeEEEEEecCCcEEEEEec---------CcEEEEeCCCCceeeeecCC-CCCCCe
Q 006126          492 ---CSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSIHE---------GQIDVYEAPTLNHTSQLVPD-KMDLPI  553 (660)
Q Consensus       492 ---~~~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d---------~~i~iwd~~~~~~~~~~~~~-~~~~~v  553 (660)
                         ....+.     ++..+..---+++.+++|.|.|.+|++...         ..|.+||.+..-.+.-...+ ......
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P  401 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYP  401 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCC
Confidence               000000     011111100157889999999999998522         23677887654433322111 112224


Q ss_pred             EEEEEcc---CCCEEEEEecCCeEEEEECC
Q 006126          554 TYATYSC---DGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       554 ~~~~~s~---dg~~l~sg~~dg~I~iwd~~  580 (660)
                      .-++|+|   +|.+|..+=..|.+.-|++.
T Consensus       402 ~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  402 AYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            4566664   55666666666777666653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=2.1e-13  Score=137.08  Aligned_cols=289  Identities=12%  Similarity=0.119  Sum_probs=195.5

Q ss_pred             CCCCeEEEEEecCCCEEEEEE-CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE-EEe--
Q 006126          310 FGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-ALR--  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~s--  385 (660)
                      |...-+.|..+|||+|+++.| ..-.|++||+..-...+.        +                +-...+..+ -.+  
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE--------R----------------hlDae~V~feiLsDD  105 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE--------R----------------HLDAEVVDFEILSDD  105 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeee--------e----------------cccccceeEEEeccc
Confidence            677888999999999876554 478999999876544221        0                112222222 222  


Q ss_pred             -CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 -GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 -~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                       .+.+.-..|.+|.+-... |.... +. -+..-..++++.-. -|++++....|+-++++.|+.+..|....+.++++.
T Consensus       106 ~SK~v~L~~DR~IefHak~-G~hy~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~  182 (703)
T KOG2321|consen  106 YSKSVFLQNDRTIEFHAKY-GRHYR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS  182 (703)
T ss_pred             hhhheEeecCceeeehhhc-Ceeee-ee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence             222223335555443221 21111 11 01122355665544 566666677899999999999999988889999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC--CCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCce
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH  540 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~  540 (660)
                      .++...+|++|+.+|.|..||.++...............|.  .....|+++.|+.+|-.+++| .+|.+.|||+++.++
T Consensus       183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p  262 (703)
T KOG2321|consen  183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP  262 (703)
T ss_pred             ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence            99999999999999999999999855433322221111111  001359999999999999996 899999999999888


Q ss_pred             eeeecCCCCCCCeEEEEEccC--CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126          541 TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI  618 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~d--g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l  618 (660)
                      +..-. +....+|..+.|.+.  ++.+++. ....++|||-.+|+....+.+         ...++  .+++-| ++.++
T Consensus       263 l~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---------t~~lN--D~C~~p-~sGm~  328 (703)
T KOG2321|consen  263 LLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---------TSDLN--DFCFVP-GSGMF  328 (703)
T ss_pred             eeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---------cCCcC--ceeeec-CCceE
Confidence            65542 233678999999765  3445444 457899999999999988875         23355  888999 78899


Q ss_pred             EEEeCCCeEEEEeCCCC--ceec
Q 006126          619 ALGLTNGRVHVIEPLES--EVEW  639 (660)
Q Consensus       619 ~s~s~Dg~v~iw~~~~~--~~~w  639 (660)
                      ++|-+++.+..|=+..-  .++|
T Consensus       329 f~Ane~~~m~~yyiP~LGPaPrW  351 (703)
T KOG2321|consen  329 FTANESSKMHTYYIPSLGPAPRW  351 (703)
T ss_pred             EEecCCCcceeEEccccCCCchh
Confidence            99999888877765542  2466

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=9.5e-13  Score=132.62  Aligned_cols=318  Identities=10%  Similarity=0.106  Sum_probs=204.3

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      +...+|++|+++|.+.. ..++|++....   ....+..      ...+.++.|||-|.||.+--.   -.+|.-.+   
T Consensus        38 ~v~~~S~~G~lfA~~~~-~~v~i~~~~~~---~~~lt~~------~~~~~~L~fSP~g~yL~T~e~---~~i~~~~~---  101 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSDN-QVVKVFEIATL---KVVLCVE------LKKTYDLLFSPKGNYLLTWEP---WAIYGPKN---  101 (566)
T ss_pred             eeEEEcCCCcEEEEEcC-CeEEEEEccCC---cEEEEec------cceeeeeeecccccccccccc---cccccCCC---
Confidence            45688999998887654 66888888741   1222221      338999999999999876321   11111110   


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                           .....+++|+.+++.....+.. ..+.. ++..|+ ++.+++-- .+.+.+|++...+... -.-|...|+.+.+
T Consensus       102 -----~~~pn~~v~~vet~~~~s~~q~-k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~l  173 (566)
T KOG2315|consen  102 -----ASNPNVLVYNVETGVQRSQIQK-KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSL  173 (566)
T ss_pred             -----CCCCceeeeeeccceehhheeh-hhhcC-cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEe
Confidence                 0122345666666443322221 12222 678888 55555544 7899999998733221 1245778899999


Q ss_pred             cCCC---eEEE-----EeCCCeEEEEeCCCCceeeEe---eccCCCeEEEEEeCCCCEEE-EE--eCC---------CcE
Q 006126          424 LPQD---LFAF-----GFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLV-SS--GAD---------AQL  480 (660)
Q Consensus       424 sp~~---~l~s-----~~~d~~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~-s~--s~d---------g~i  480 (660)
                      +|.+   .+++     +|.-+.|+||....+..-..+   .-....=..+.|++-|.-|+ .+  ..|         .++
T Consensus       174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L  253 (566)
T KOG2315|consen  174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL  253 (566)
T ss_pred             cCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence            9985   4432     334458999986522111111   00122233567888665432 22  223         357


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT  557 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  557 (660)
                      ++.++...+    ..+.   ....   ++|.++.|+|+|+.+++  | .-..+.|+|+ .+.++..+.    .++-.++-
T Consensus       254 yll~t~g~s----~~V~---L~k~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~----egpRN~~~  318 (566)
T KOG2315|consen  254 YLLATQGES----VSVP---LLKE---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP----EGPRNTAF  318 (566)
T ss_pred             EEEEecCce----EEEe---cCCC---CCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC----CCCccceE
Confidence            777777311    1122   1112   68999999999998887  4 5678999999 578877773    67778899


Q ss_pred             EccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC------CCeEE
Q 006126          558 YSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVH  628 (660)
Q Consensus       558 ~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~------Dg~v~  628 (660)
                      |+|.|++|+.+|-+   |.|-|||+.+.+++..+...            +.+-+.|+| ||.+++|++.      |+.++
T Consensus       319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~P-dGe~flTATTaPRlrvdNg~K  385 (566)
T KOG2315|consen  319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSP-DGEYFLTATTAPRLRVDNGIK  385 (566)
T ss_pred             ECCCCCEEEEeecCCCCCceEEEeccchhhccccccC------------CceEEEEcC-CCcEEEEEeccccEEecCCeE
Confidence            99999999987765   89999999998888877632            234689999 8999999874      68899


Q ss_pred             EEeCCCC
Q 006126          629 VIEPLES  635 (660)
Q Consensus       629 iw~~~~~  635 (660)
                      ||++.-.
T Consensus       386 iwhytG~  392 (566)
T KOG2315|consen  386 IWHYTGS  392 (566)
T ss_pred             EEEecCc
Confidence            9998654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=2.1e-13  Score=128.02  Aligned_cols=207  Identities=12%  Similarity=0.094  Sum_probs=156.4

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF  390 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~  390 (660)
                      ..+|+|.+|++|+..+|.+..+..+.||.....+.                                             
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~---------------------------------------------   44 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL---------------------------------------------   44 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------------
Confidence            56788888888888888887777777776433321                                             


Q ss_pred             EEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC-CC--ceeeEeeccCCCeEEEEEeC
Q 006126          391 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TK--KTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       391 s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~-~~--~~~~~~~~~~~~v~~l~~sp  466 (660)
                                    .+...++..|...|+.++|+|.. .|++|+.|..-++|... .+  ++.-.+..++...+++.|+|
T Consensus        45 --------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP  110 (361)
T KOG1523|consen   45 --------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP  110 (361)
T ss_pred             --------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC
Confidence                          24556778899999999999999 99999999999999983 33  33444556889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-----C---
Q 006126          467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-----T---  537 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-----~---  537 (660)
                      .++.+++|+....|.||-++....-  -.-+.+...+.   +.|.++.|+|++-++++ +.|+..+|+..-     .   
T Consensus       111 ~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPir---Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa  185 (361)
T KOG1523|consen  111 KENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIR---STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA  185 (361)
T ss_pred             cCceEEeccCccEEEEEEEecccce--ehhhhhCCccc---cceeeeeccCCcceecccccCcceeEEEEeeeccccCCC
Confidence            9999999999999999988763211  00000111222   78999999999999998 589999988742     1   


Q ss_pred             ----------CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          538 ----------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       538 ----------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                                |..+..+.  ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus       186 p~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  186 PTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                      11222221  236789999999999999999999999999987664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.5e-13  Score=146.11  Aligned_cols=212  Identities=15%  Similarity=0.066  Sum_probs=145.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCe--EEEEeC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCP  443 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~--I~iwd~  443 (660)
                      .|...+.+++|+  |+.|+.++ +   ..|++||+.+++.... .........++|+||| .|+.++ .+|.  |++||+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            477789999999  88888876 3   3699999988764322 2122233468999999 776654 6775  455577


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                      .+++ ...+..+...+....|+|||+.|+.++ .+|...+|++.....    ... .. ++.   .  .+..|+|||+++
T Consensus       280 ~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~-~l-~~~---~--~~~~~SpDG~~i  347 (429)
T PRK01742        280 NGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GAS-LV-GGR---G--YSAQISADGKTL  347 (429)
T ss_pred             CCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeE-Ee-cCC---C--CCccCCCCCCEE
Confidence            6665 455666777788999999999877665 578888888754211    111 11 222   2  457899999999


Q ss_pred             EEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC--CCCeeEEEeecccccCCCCcC
Q 006126          523 LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT--STLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       523 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~--~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      +......+.+||+.+++..... ..   ....++.|+|||++|+.++.++.+.+|++  .+|+....+..       | .
T Consensus       348 a~~~~~~i~~~Dl~~g~~~~lt-~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~-------~-~  415 (429)
T PRK01742        348 VMINGDNVVKQDLTSGSTEVLS-ST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG-------S-D  415 (429)
T ss_pred             EEEcCCCEEEEECCCCCeEEec-CC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC-------C-C
Confidence            8854456777999888754322 21   12356789999999999999998888875  35666666652       2 3


Q ss_pred             cccceEEEEEec
Q 006126          601 LELYPLVIAAHP  612 (660)
Q Consensus       601 ~~v~~~~v~~sp  612 (660)
                      ..+.  .++|+|
T Consensus       416 g~~~--~p~wsp  425 (429)
T PRK01742        416 GQVK--FPAWSP  425 (429)
T ss_pred             CCCC--CcccCC
Confidence            3344  789998

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=5.3e-13  Score=145.15  Aligned_cols=255  Identities=13%  Similarity=0.084  Sum_probs=176.7

Q ss_pred             CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEE
Q 006126          374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH  441 (660)
Q Consensus       374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~-------~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iw  441 (660)
                      .|...|..++.+   +.++++|+ ||+|++|+...       .+...++......+.++...+.+ .+|+++.||.|.+.
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            588888888888   57999999 99999999864       12334444567789999999999 99999999999999


Q ss_pred             eCCCCc-------eeeEeecc-CCCe-EEEEEeC-CCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe
Q 006126          442 CPCTKK-------TKAKLKGH-QNRI-TCLAYSL-SLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  510 (660)
Q Consensus       442 d~~~~~-------~~~~~~~~-~~~v-~~l~~sp-~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v  510 (660)
                      ++....       +......+ .+.+ ..-+|.. .+. .++.+..-+.|..||++........  + ....|    +.|
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l--k-~~~~h----G~v 1198 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL--K-NQLRH----GLV 1198 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh--h-cCccc----cce
Confidence            987521       11111111 2223 3333433 333 6888888999999999984322211  1 11223    689


Q ss_pred             EEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC---CEEEEEe--cCCeEEEEECCCCee
Q 006126          511 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG---KCIYVSC--KSGHVKVFDTSTLEL  584 (660)
Q Consensus       511 ~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~sg~--~dg~I~iwd~~~~~~  584 (660)
                      ++++.+|.+.++++| ..|.+.+||++=+.++..+..+ +..++..++.+|-.   ...++++  ..+.|.+|++.+|..
T Consensus      1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eEEEecCCceEEEEecCCceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            999999999999997 7799999999999888888664 46888888887643   4555544  468899999999977


Q ss_pred             EEEeecccc-------cCCC--CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          585 RCQINLTAY-------AQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       585 ~~~~~~~~~-------~~~g--h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ...+.....       .+..  .....+......+.. .+.++.+|+.|+.||.||....+.
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCccc
Confidence            766654310       1110  001112222233333 456899999999999999988765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.58  E-value=7.8e-15  Score=143.78  Aligned_cols=281  Identities=11%  Similarity=0.115  Sum_probs=213.8

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ......+.|+.+|++|+.|+..|.+-.+||.+......                     +   .-...|.++.|-  ..+
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---------------------i---~v~Etv~Dv~~LHneq~  184 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---------------------I---NVMETVRDVTFLHNEQF  184 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeee---------------------e---ehhhhhhhhhhhcchHH
Confidence            45678899999999999999999999999887765221                     0   234557788887  567


Q ss_pred             EEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          389 LFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       389 l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      +|++....+.|||-. |..+..++.+ ..|..+.|-|.. +|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-
T Consensus       185 ~AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~  262 (545)
T KOG1272|consen  185 FAVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY  262 (545)
T ss_pred             HHhhhhceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc
Confidence            777778999999965 6666666544 457789999999 9999999999999999999999999888889999999998


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecC
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~  546 (660)
                      +..+-+|...|+|.+|.....     .++- ....|.   ++|.++++.++|+|+++ |.|..++|||++....+.++..
T Consensus       263 NaVih~GhsnGtVSlWSP~sk-----ePLv-KiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  263 NAVIHLGHSNGTVSLWSPNSK-----EPLV-KILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             cceEEEcCCCceEEecCCCCc-----chHH-HHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            889999999999999999883     3333 234565   79999999999999999 7999999999998887777643


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCeEEEEE-CCCCeeEEEeecccccCCCCc-CcccceEEEEEecCCCCEEEEEeCC
Q 006126          547 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFD-TSTLELRCQINLTAYAQPGTI-SLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       547 ~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd-~~~~~~~~~~~~~~~~~~gh~-~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                         ..+...++||..|  +++.+....|.||. .-.+..-......     .|. ...|  ..+.|.| -...|-.|-..
T Consensus       334 ---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm-----~H~~~~~V--~~l~FcP-~EDvLGIGH~~  400 (545)
T KOG1272|consen  334 ---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYM-----NHRCGGPV--EDLRFCP-YEDVLGIGHAG  400 (545)
T ss_pred             ---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchh-----hhccCccc--ccceecc-HHHeeeccccC
Confidence               4566778887655  33334556799995 2222211111111     111 2234  4899999 67888888888


Q ss_pred             CeEEEEeCCCCceec
Q 006126          625 GRVHVIEPLESEVEW  639 (660)
Q Consensus       625 g~v~iw~~~~~~~~w  639 (660)
                      |.-.|.-+.+|++-+
T Consensus       401 G~tsilVPGsGePN~  415 (545)
T KOG1272|consen  401 GITSILVPGSGEPNY  415 (545)
T ss_pred             CceeEeccCCCCCCc
Confidence            887888888887643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.58  E-value=3.1e-12  Score=127.43  Aligned_cols=327  Identities=9%  Similarity=0.035  Sum_probs=214.6

Q ss_pred             CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126          264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      -...+.+||.|.+|++....| |.+|+...   -..+.++.      ...|..+.|||.++||.+-+..+.+   +-+  
T Consensus        34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~---~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~---~pe--   98 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAAG-VECWGGPS---KAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPII---EPE--   98 (561)
T ss_pred             chhheeecCcchheehhhccc-eEEccccc---hhheeeee------cCCceecccCcccceeeeeccCCcc---Chh--
Confidence            344469999999999887755 78888764   33455542      4579999999999999998765543   100  


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCC--eE-EEEEe--CCEEEEEeCCcEEEEECCCCeE-EEEEc-CCCC
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS--IS-CFALR--GSHLFSASGGKISIFSLETFQT-LATFA-NPPP  416 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~v~~s--~~~l~s~~dg~I~iwd~~~~~~-~~~~~-~~~~  416 (660)
                       .........-.+.+||..+|.++....  +...+  .+ -+.|+  +.++|-.....+.|+++ ++.. ...+. -...
T Consensus        99 -~e~sp~~~~n~~~vwd~~sg~iv~sf~--~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~  174 (561)
T COG5354          99 -IEISPFTSKNNVFVWDIASGMIVFSFN--GISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPV  174 (561)
T ss_pred             -hccCCccccCceeEEeccCceeEeecc--ccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcccc
Confidence             000000111135788888888776443  22222  33 56777  55655555778999997 3322 11121 1235


Q ss_pred             CeEEEEEcCCC---eEEE-----EeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe-----------CC
Q 006126          417 IATYFILLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-----------AD  477 (660)
Q Consensus       417 ~v~~v~~sp~~---~l~s-----~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-----------~d  477 (660)
                      .+....|+|.+   .|+.     .+.++.+++|.+..+..+.+-.-....-..+.|++.|+++++-.           ..
T Consensus       175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence            68889999975   4443     45677899999887766654433333445678999998876421           12


Q ss_pred             CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126          478 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT  554 (660)
Q Consensus       478 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  554 (660)
                      ..+.+++++..      .+. ...+-.   ++|...+|.|.++.+++  | .+-.+.++|++.. ....+.    ...-.
T Consensus       255 snLyl~~~~e~------~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rN  319 (561)
T COG5354         255 SNLYLLRITER------SIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRN  319 (561)
T ss_pred             ceEEEEeeccc------ccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Ccccc
Confidence            45778887742      222 111222   68999999999998887  3 6788999999654 433332    44556


Q ss_pred             EEEEccCCCEEEEEecC---CeEEEEECCCCeeEE-EeecccccCCCCcCcccceEEEEEecCCCCEEEEEe------CC
Q 006126          555 YATYSCDGKCIYVSCKS---GHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL------TN  624 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s------~D  624 (660)
                      .+.|+|.+++++.++-|   |.|-+||........ .+..            .+..-+.|+| |++++.+..      .|
T Consensus       320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~------------~n~s~~~wsp-d~qF~~~~~ts~k~~~D  386 (561)
T COG5354         320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG------------LNTSYCDWSP-DGQFYDTDTTSEKLRVD  386 (561)
T ss_pred             cccccCcccEEEEecCCccccceEEeccCCceEEEEEeec------------CCceEeeccC-CceEEEecCCCcccccC
Confidence            78899999999997776   789999988765444 4431            1233689999 899887764      37


Q ss_pred             CeEEEEeCCCCce
Q 006126          625 GRVHVIEPLESEV  637 (660)
Q Consensus       625 g~v~iw~~~~~~~  637 (660)
                      ..|.||++...+.
T Consensus       387 n~i~l~~v~g~~~  399 (561)
T COG5354         387 NSIKLWDVYGAKV  399 (561)
T ss_pred             cceEEEEecCchh
Confidence            8899999977643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=3.7e-12  Score=119.84  Aligned_cols=232  Identities=14%  Similarity=0.237  Sum_probs=156.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-C------CcEEEEec
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-T------ATHKLWKW  340 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-d------g~i~vw~~  340 (660)
                      ++|..|..-++.|..+| .+||+.+..++.....   +    +.+.+.-+..---.++|+-.+. +      ..+.||| 
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~---~----~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-   81 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ---F----IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-   81 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhhhc---c----ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-
Confidence            47788888888887766 8999987422111111   1    1222222222222345554432 2      2455554 


Q ss_pred             cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECC-CCeEEEEEcC--CCCC
Q 006126          341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFAN--PPPI  417 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~-~~~~~~~~~~--~~~~  417 (660)
                                          -....++..+   ....+|.+|.+..+.|++.-.+.|.+|... ..+.++.+..  .+.+
T Consensus        82 --------------------D~k~~~i~el---~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG  138 (346)
T KOG2111|consen   82 --------------------DLKERCIIEL---SFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG  138 (346)
T ss_pred             --------------------cccCcEEEEE---EeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCc
Confidence                                3333333322   366789999999889999999999999987 4555655542  2334


Q ss_pred             eEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCCCEEEEEeCCCc-EEEEEcCCCeeee
Q 006126          418 ATYFILLPQD-LFAF-GFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLC  492 (660)
Q Consensus       418 v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~-i~vwd~~~~~~~~  492 (660)
                      ..+++-..+. .|+. |-.-|.|.|-|+...+.  -..+..|.+.|.|++.+-+|..+|++|..|+ |||||..+|+.+ 
T Consensus       139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l-  217 (346)
T KOG2111|consen  139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL-  217 (346)
T ss_pred             eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe-
Confidence            4333333333 4544 44568999999886554  3667889999999999999999999999997 899999997644 


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL  538 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~  538 (660)
                          +....|...  ..|.+++|||++.+|+++ ..|+++|+.++..
T Consensus       218 ----~E~RRG~d~--A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  218 ----QELRRGVDR--ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ----eeeecCCch--heEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                334455444  689999999999999995 6699999998753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.5e-12  Score=139.05  Aligned_cols=214  Identities=10%  Similarity=0.027  Sum_probs=147.7

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---CCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~---d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      .|.++|.. +...+.+..+...+.+..|+||| .|+..+.   +..|++||+.+++.. .+..+.+.+....|+|||+.|
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            78888875 45556666778889999999999 7776653   468999999988653 455566677889999999987


Q ss_pred             E-EEeCCCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec--CcEEEEeCCCCceeeee
Q 006126          472 V-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE--GQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       472 ~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d--~~i~iwd~~~~~~~~~~  544 (660)
                      + +.+.++.  |++||+.++...   .   + ..+.   .......|+|||+.|+..  .+  ..|++||+..+.. ..+
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~---~---L-t~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~l  329 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTT---R---L-TDSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRI  329 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceE---E---c-cCCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEe
Confidence            6 4455554  777898875421   1   1 1222   345678999999999873  22  3689999876554 344


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ..  +...+....|+|||++|+..+.+   ..|.+||+.++.. ..+..      +   ..+.  .+.|+| ||++|+..
T Consensus       330 t~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------~---~~~~--~p~~sp-DG~~i~~~  394 (435)
T PRK05137        330 SF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------G---FLVE--GPTWAP-NGRVIMFF  394 (435)
T ss_pred             ec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC------C---CCCC--CCeECC-CCCEEEEE
Confidence            32  24456678999999999876653   3688899866543 33321      1   1223  789999 89988766


Q ss_pred             eCC------CeEEEEeCCCCce
Q 006126          622 LTN------GRVHVIEPLESEV  637 (660)
Q Consensus       622 s~D------g~v~iw~~~~~~~  637 (660)
                      +.+      ..+.++++..+..
T Consensus       395 ~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        395 RQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EccCCCCCcceEEEEECCCCce
Confidence            543      2577888866544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.57  E-value=1.9e-13  Score=136.47  Aligned_cols=245  Identities=16%  Similarity=0.220  Sum_probs=162.5

Q ss_pred             eEEEEEe--CCEEEEEeCCcEEEEECCCCeEE----E--EEcCCCCC---eEEEEEcCCC-eEEEEeCCCeEEEEeCCCC
Q 006126          379 ISCFALR--GSHLFSASGGKISIFSLETFQTL----A--TFANPPPI---ATYFILLPQD-LFAFGFDDSSILVHCPCTK  446 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~----~--~~~~~~~~---v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~  446 (660)
                      +....++  |++|+..-...+.+|+...+...    .  .+.+....   .+...-.|.+ -++.|-.-|.|.+.|....
T Consensus       126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~  205 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF  205 (636)
T ss_pred             eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence            3344444  66776666677888887643211    1  12221111   1112224566 7888999999999997763


Q ss_pred             ceeeEeec----cCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeee-----------ceeeeeeeeccC---C--
Q 006126          447 KTKAKLKG----HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLC-----------SKFLHSFQTGLV---P--  505 (660)
Q Consensus       447 ~~~~~~~~----~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~~---~--  505 (660)
                      +..+.+..    .+..|+|+.|-|. ...++++-.+|.+++||..--....           ...+.+ ...+.   |  
T Consensus       206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t-~ksk~~rNPv~  284 (636)
T KOG2394|consen  206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT-SKSKKTRNPVA  284 (636)
T ss_pred             HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee-eeccccCCccc
Confidence            32222211    3478999999984 4456667789999999763211000           000000 00000   0  


Q ss_pred             ----CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          506 ----ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       506 ----~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                          ..+.|+..+|+|||++||+ +.||.++|||..+.+++..+..-  -+...|++|||||+||++|++|.-|.||.+.
T Consensus       285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence                0157889999999999999 89999999999988876665432  5779999999999999999999999999999


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecC----------------------------------CC-----------
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPL----------------------------------EP-----------  615 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~----------------------------------d~-----------  615 (660)
                      ..+++..=.       ||   .-||..|+|.|-                                  ++           
T Consensus       363 erRVVARGq-------GH---kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~  432 (636)
T KOG2394|consen  363 ERRVVARGQ-------GH---KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS  432 (636)
T ss_pred             cceEEEecc-------cc---ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence            998887733       33   345557887620                                  01           


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCc
Q 006126          616 --NRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       616 --~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                        -.|.+.+.|-.+.+||+....
T Consensus       433 v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  433 VTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             eEEEeecccccceEEEEecchhh
Confidence              147788999999999997654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=1.5e-14  Score=141.77  Aligned_cols=275  Identities=9%  Similarity=0.141  Sum_probs=201.7

Q ss_pred             CCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126          263 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       263 ~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~  342 (660)
                      ....-+.++.+|++++.|+.-|.+..+|+.+    ..+.. .+.   -...|.++.|-.+.+++|++-. ..+.|||-..
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----~~L~~-Ei~---v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G  200 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----KKLHF-EIN---VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNG  200 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeeccc----ceeee-eee---hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCC
Confidence            3344458999999999999999999999985    33221 121   2568999999999998777643 4555555332


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIAT  419 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~  419 (660)
                      .+..                   ++      .....|..+.|- -. +|++++ .|.++.-|+.+|+.+..+....+.+.
T Consensus       201 tElH-------------------Cl------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~  255 (545)
T KOG1272|consen  201 TELH-------------------CL------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD  255 (545)
T ss_pred             cEEe-------------------eh------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence            2210                   11      134567778888 44 456666 69999999999999999988888899


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126          420 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  498 (660)
                      .+.-+|-+ .+-+|...|+|.+|.....+++..+-.|.++|.++++.++|+++++.+.|..++|||++..     ..+++
T Consensus       256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-----~ql~t  330 (545)
T KOG1272|consen  256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-----YQLHT  330 (545)
T ss_pred             hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-----cccce
Confidence            99999999 9999999999999999999998888889999999999999999999999999999999983     23332


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCc--eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~-~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~  575 (660)
                      ....     .....+++|..| .|+.|....|.||.= -.+.  .-..+..+.-.++|..+.|.|-.+.|-.|-..|.-.
T Consensus       331 ~~tp-----~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts  404 (545)
T KOG1272|consen  331 YRTP-----HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS  404 (545)
T ss_pred             eecC-----CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence            3332     356778888655 455577778999952 2221  111222222256899999999888888776666444


Q ss_pred             EEECCCC
Q 006126          576 VFDTSTL  582 (660)
Q Consensus       576 iwd~~~~  582 (660)
                      |.=.-.|
T Consensus       405 ilVPGsG  411 (545)
T KOG1272|consen  405 ILVPGSG  411 (545)
T ss_pred             EeccCCC
Confidence            4333333

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=4.8e-12  Score=130.32  Aligned_cols=286  Identities=16%  Similarity=0.142  Sum_probs=173.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCcee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS  346 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~  346 (660)
                      ..|+|||+++++++.||.|.++|+.+   ......+.     -.....++++|+||++++++.. ++.+.++|.++.+..
T Consensus        42 ~~~s~Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~-----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   42 LKFSPDGRYLYVANRDGTVSVIDLAT---GKVVATIK-----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EE-TT-SSEEEEEETTSEEEEEETTS---SSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCc---ccEEEEEe-----cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            47899999999999999999999986   33444443     2567889999999999998765 789998887776542


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-eC-CcEEEEECCCCeEEE-EEcCCCCCeEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-SG-GKISIFSLETFQTLA-TFANPPPIATYF  421 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-~d-g~I~iwd~~~~~~~~-~~~~~~~~v~~v  421 (660)
                      ..            ..++...    .......+..+..+  ...++.. -| +.|.+.|....+... +...........
T Consensus       114 ~~------------I~~~~~~----~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen  114 KT------------IPTGGMP----VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             EE------------EE--EE-----TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             ee------------ccccccc----ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            21            0000000    00123456666666  4434444 44 888888877654332 222334556688


Q ss_pred             EEcCCC-eEEE-EeCCCeEEEEeCCCCceeeEee----ccCCCeEEEEEeCC----------CCEEEEEeCCCcEEEEEc
Q 006126          422 ILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLS----------LNVLVSSGADAQLCVWDA  485 (660)
Q Consensus       422 ~~sp~~-~l~s-~~~d~~I~iwd~~~~~~~~~~~----~~~~~v~~l~~sp~----------~~~l~s~s~dg~i~vwd~  485 (660)
                      .|+|++ +++. ...+..|-++|..+++.+..+.    .|..++..+ .+|.          +...++.-....+.+||.
T Consensus       178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~  256 (369)
T PF02239_consen  178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD  256 (369)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred             ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchh
Confidence            999999 5544 5567799999999987776553    244444433 2332          222222222335556787


Q ss_pred             CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126          486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                      .+++........          +.-.-+..+|+++++.+.     ..++|.++|.++.+.+.++.... ...+..+.|++
T Consensus       257 ~~wkvv~~I~~~----------G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~  325 (369)
T PF02239_consen  257 YAWKVVKTIPTQ----------GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNP  325 (369)
T ss_dssp             TBTSEEEEEE-S----------SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-T
T ss_pred             hcCeEEEEEECC----------CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECC
Confidence            776544332222          223678889999999984     34789999999998887775422 34599999999


Q ss_pred             CCCEEEEEecC--CeEEEEECCCCeeEEEee
Q 006126          561 DGKCIYVSCKS--GHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       561 dg~~l~sg~~d--g~I~iwd~~~~~~~~~~~  589 (660)
                      ||+++..+..+  +.|.|||..+.+.+..++
T Consensus       326 dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  326 DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            99988776665  369999999999998887

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.7e-12  Score=136.02  Aligned_cols=217  Identities=15%  Similarity=0.071  Sum_probs=141.3

Q ss_pred             cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC
Q 006126          285 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK  364 (660)
Q Consensus       285 ~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (660)
                      .|.+||..+    ...+.++    .|...+.+.+|+|||+.|+..+..+.                              
T Consensus       183 ~l~~~d~dg----~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g------------------------------  224 (435)
T PRK05137        183 RLAIMDQDG----ANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANG------------------------------  224 (435)
T ss_pred             EEEEECCCC----CCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCC------------------------------
Confidence            677888763    3333332    16778999999999999888764210                              


Q ss_pred             ceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCC--eEEE
Q 006126          365 LVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDS--SILV  440 (660)
Q Consensus       365 ~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~--~I~i  440 (660)
                                                   +..|.+||+.+++.. .+..+...+...+|+||| .| ++.+.++  .|++
T Consensus       225 -----------------------------~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  274 (435)
T PRK05137        225 -----------------------------RPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT  274 (435)
T ss_pred             -----------------------------CCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence                                         112334444444332 222334455678999999 55 4555555  4888


Q ss_pred             EeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126          441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       441 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                      ||+.+++. ..+..+........|+|||+.++..+. +|  .|++||+.++..   ..   +..+ .   ..+....|+|
T Consensus       275 ~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~---lt~~-~---~~~~~~~~Sp  343 (435)
T PRK05137        275 MDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP---RR---ISFG-G---GRYSTPVWSP  343 (435)
T ss_pred             EECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe---EE---eecC-C---CcccCeEECC
Confidence            89987765 445556666778899999999887764 33  588888876432   11   2111 1   3466788999


Q ss_pred             CCcEEEE-Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC------CeEEEEECCCCee
Q 006126          518 DQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTSTLEL  584 (660)
Q Consensus       518 ~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d------g~I~iwd~~~~~~  584 (660)
                      ||+.|+. +.+   ..|.+||+..+. ...+..   ...+....|+|||++|+..+.+      ..++++|+..+..
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            9999987 322   368889985544 344432   2346778999999998875543      3688888876654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.8e-12  Score=138.32  Aligned_cols=213  Identities=18%  Similarity=0.091  Sum_probs=144.7

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  470 (660)
                      ..|.+||.. +...+.+..+...+.+.+|+||| .|+..+.+   ..|++||+.+++... +..+.+...++.|+|||+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            368899985 44445566677788999999999 77776643   479999998876533 3334455567899999998


Q ss_pred             EEE-EeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecC--cEEEEeCCCCceeee
Q 006126          471 LVS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ  543 (660)
Q Consensus       471 l~s-~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~--~i~iwd~~~~~~~~~  543 (660)
                      ++. .+.+|  .|++||+.+++..   .   + ..+.   ......+|+|||++|+.+  .++  .|+++|+.+++.. .
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~---~---l-t~~~---~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~  330 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLT---R---L-TNHF---GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-R  330 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeE---E---C-ccCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E
Confidence            764 45555  5999999885421   1   1 1222   344678999999999874  333  4778888776643 3


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      +...  .......+|+|||++|+..+.++   .|++||+.+++.. .+..      +  . ...  ...|+| ||++++.
T Consensus       331 lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~------~--~-~~~--~p~~sp-dG~~i~~  395 (433)
T PRK04922        331 LTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP------G--S-LDE--SPSFAP-NGSMVLY  395 (433)
T ss_pred             eecC--CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC------C--C-CCC--CceECC-CCCEEEE
Confidence            3221  33345689999999998765443   6999999888755 3321      1  1 122  578999 8998877


Q ss_pred             EeCC---CeEEEEeCCCC
Q 006126          621 GLTN---GRVHVIEPLES  635 (660)
Q Consensus       621 ~s~D---g~v~iw~~~~~  635 (660)
                      .+.+   +.|.++++..+
T Consensus       396 ~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        396 ATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEecCCceEEEEEECCCC
Confidence            6653   45778888544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=2.9e-12  Score=136.04  Aligned_cols=212  Identities=12%  Similarity=0.113  Sum_probs=142.9

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe---CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~---~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      .|.+||...... +.+..+...+.+.+|+||| .|+..+   .+..|++||+.+++... +....+.+..+.|+|||+.|
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence            688898875443 3444566788999999999 776544   34579999998886433 22233345568999999988


Q ss_pred             EEE-eCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeeee
Q 006126          472 VSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQL  544 (660)
Q Consensus       472 ~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~  544 (660)
                      +.. +.+|  .|++||+.+++..     + +..++    ..+....|+|||+.|+. +. ++  .|+++|+.++... .+
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~-----~-lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l  326 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIR-----Q-VTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RI  326 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEE-----E-ccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Ee
Confidence            865 4454  5889999885421     1 22222    35678999999999887 43 33  4666677666543 33


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ..  +.......+|+|||++|+..+.+   ..|++||+.+++... +..         .....  ...|+| ||.+|+.+
T Consensus       327 t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~---------~~~~~--~p~~Sp-DG~~i~~~  391 (429)
T PRK03629        327 TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD---------TFLDE--TPSIAP-NGTMVIYS  391 (429)
T ss_pred             ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC---------CCCCC--CceECC-CCCEEEEE
Confidence            32  23445678999999999876553   358899999887443 321         11112  578999 89999999


Q ss_pred             eCCCe---EEEEeCCCC
Q 006126          622 LTNGR---VHVIEPLES  635 (660)
Q Consensus       622 s~Dg~---v~iw~~~~~  635 (660)
                      +.|+.   +.+|++..+
T Consensus       392 s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        392 SSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             EcCCCceEEEEEECCCC
Confidence            88764   677777443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.3e-13  Score=137.68  Aligned_cols=232  Identities=16%  Similarity=0.161  Sum_probs=159.1

Q ss_pred             EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe-eccCCCeEEEEEeC--CCCEEEEEeCCCcEEEE
Q 006126          408 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSL--SLNVLVSSGADAQLCVW  483 (660)
Q Consensus       408 ~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp--~~~~l~s~s~dg~i~vw  483 (660)
                      ...+.+|.+-|+|+.|+.+| +|++|++|-.+.|||.-..+.++.+ .+|...|.++.|-|  +.+.+++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            35678999999999999999 9999999999999999888888777 46999999999998  56789999999999999


Q ss_pred             EcCCCeee-----eceeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCcee-------eeecC-CC
Q 006126          484 DAVGWKKL-----CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHT-------SQLVP-DK  548 (660)
Q Consensus       484 d~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~-------~~~~~-~~  548 (660)
                      |+...+..     ...... ....|.   ..|..++-.|++ ..+.+ +.||+|+-+|++.....       ..+.. ..
T Consensus       123 dl~~~~~~~~d~~~~~~~~-~~~cht---~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTR-CWSCHT---DRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             ecccccccccccCccchhh-hhhhhh---hhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            99852210     011222 344566   578889999998 44445 69999999999853211       01100 00


Q ss_pred             CCCCeEEEEEccCC-CEEEEEecCCeEEEEECCC--------CeeEEEee----cccccCCCCcC-------ccc-ceEE
Q 006126          549 MDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST--------LELRCQIN----LTAYAQPGTIS-------LEL-YPLV  607 (660)
Q Consensus       549 ~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~--------~~~~~~~~----~~~~~~~gh~~-------~~v-~~~~  607 (660)
                      .--...++.++|.. .+|++|+.|-..++||.+.        +.....-+    ...+...||..       ..+ -++-
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            12346688899854 6889999999999999432        11000000    01122334421       111 1456


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          608 IAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      +.|+| +|.-|+..-....|++++++.+++...-.+|
T Consensus       279 vtfnp-NGtElLvs~~gEhVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  279 VTFNP-NGTELLVSWGGEHVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             EEECC-CCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence            89999 6765544444457999999998875444444

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=6.8e-13  Score=124.67  Aligned_cols=215  Identities=12%  Similarity=0.091  Sum_probs=158.1

Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 006126          413 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  488 (660)
Q Consensus       413 ~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~  488 (660)
                      ....+|+|.+|++|. .++.+.....|.||.....+   ..+++..|...|+++.|+|..+.|++++.|..-++|....+
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            345789999999999 99999999999999877654   67888999999999999999999999999999999998443


Q ss_pred             eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEE
Q 006126          489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCI  565 (660)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l  565 (660)
                      ..  ..+.. ....+.   ...+++.|+|.++.++++ ....|.||-++...-  +.......+...|+++.|+|++-++
T Consensus        88 ~~--Wkptl-vLlRiN---rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   88 GT--WKPTL-VLLRIN---RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             Ce--eccce-eEEEec---cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence            22  12222 122333   579999999999999995 667788887754321  1111122347889999999999999


Q ss_pred             EEEecCCeEEEEECCCCeeEEEeecccc---cC-------CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          566 YVSCKSGHVKVFDTSTLELRCQINLTAY---AQ-------PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       566 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~~-------~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ++|+.|+..|||..--......-.+.+.   .+       .+...+.  +..+.|+| +|+.|+-.+.|++|.+=|...+
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw--vh~v~fs~-sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW--VHGVLFSP-SGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc--eeeeEeCC-CCCEeeEecCCCceEEeecCCC
Confidence            9999999999997532211111000000   00       0011333  44999999 8999999999999999998776


Q ss_pred             c
Q 006126          636 E  636 (660)
Q Consensus       636 ~  636 (660)
                      .
T Consensus       239 ~  239 (361)
T KOG1523|consen  239 S  239 (361)
T ss_pred             c
Confidence            5

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=2.2e-10  Score=118.24  Aligned_cols=285  Identities=16%  Similarity=0.143  Sum_probs=177.0

Q ss_pred             EEEEeCC----CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----CCcEEEEeccCCceeee
Q 006126          277 AVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLE  348 (660)
Q Consensus       277 l~s~~~d----g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----dg~i~vw~~~~~~~~~~  348 (660)
                      ++.|+.+    +.|.+|++...  .+.+.......  -......++++|++++|.++..    ++.|..|++......+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~--~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~   77 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEE--TGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT   77 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETT--TTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCC--CCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence            3445555    68999888431  34443322110  2456677999999999999887    46888877665411000


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCC-CeEEEE---Ec--------
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA--------  412 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~-~~~~~~---~~--------  412 (660)
                                       .+....  ........++++  +++|+++.  +|.|.++++.. |.....   +.        
T Consensus        78 -----------------~~~~~~--~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~  138 (345)
T PF10282_consen   78 -----------------LLNSVP--SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP  138 (345)
T ss_dssp             -----------------EEEEEE--ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred             -----------------Eeeeec--cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence                             111110  122344567777  88888887  79999999986 443332   21        


Q ss_pred             --CCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCc--ee--eEee-ccCCCeEEEEEeCCCCEEEEEe-CCCcEEE
Q 006126          413 --NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKK--TK--AKLK-GHQNRITCLAYSLSLNVLVSSG-ADAQLCV  482 (660)
Q Consensus       413 --~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~--~~--~~~~-~~~~~v~~l~~sp~~~~l~s~s-~dg~i~v  482 (660)
                        .......++.++|++ ++++.. ....|.+|++....  ..  ..+. ........+.|+|+++++.+.. .+++|.+
T Consensus       139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v  218 (345)
T PF10282_consen  139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV  218 (345)
T ss_dssp             TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence              123456789999999 555543 44589999987654  32  2222 2446678999999999886665 4778999


Q ss_pred             EEcC--CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCC--CCce--eeeecCCCCCCCeE
Q 006126          483 WDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPDKMDLPIT  554 (660)
Q Consensus       483 wd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~~~~~v~  554 (660)
                      +++.  ++.......+.+...+... ......++++|||++|+++  ..+.|.+|++.  +++.  +..+..  ......
T Consensus       219 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr  295 (345)
T PF10282_consen  219 FDYDPSDGSLTEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPR  295 (345)
T ss_dssp             EEEETTTTEEEEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEE
T ss_pred             EeecccCCceeEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCcc
Confidence            9998  4433222333322222221 0257889999999999985  56789999983  3433  333332  145588


Q ss_pred             EEEEccCCCEEEEEec-CCeEEEEEC--CCCeeEEE
Q 006126          555 YATYSCDGKCIYVSCK-SGHVKVFDT--STLELRCQ  587 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~-dg~I~iwd~--~~~~~~~~  587 (660)
                      .++++|+|++|+++.. ++.|.+|++  .+|.+...
T Consensus       296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            9999999999998875 578999876  57776554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=6.6e-12  Score=133.31  Aligned_cols=212  Identities=12%  Similarity=0.074  Sum_probs=140.9

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe----CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEE-eCCC--eEEEEeC
Q 006126          374 DPKDSISCFALR--GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDS--SILVHCP  443 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~----dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~-~~d~--~I~iwd~  443 (660)
                      .+...+.+.+|+  |+.|+..+    +..|.+|++.+++.... ......+..+.|+||| .|+.. +.++  .|++||+
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            356678999999  78887654    24799999988764332 2223334568999999 66644 4444  5999999


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC-Cc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      .+++..+ +..+...+....|+|||+.|+..+.+ +.  |.++|+.++..   ..+.    .+.   .......|+|||+
T Consensus       275 ~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~lt----~~~---~~~~~~~~SpDG~  343 (429)
T PRK03629        275 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRIT----WEG---SQNQDADVSSDGK  343 (429)
T ss_pred             CCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEee----cCC---CCccCEEECCCCC
Confidence            8876544 44344567889999999998877764 44  55556666432   1111    111   2455789999999


Q ss_pred             EEEE-Ee-c--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe---EEEEECCCCeeEEEeecccc
Q 006126          521 HLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH---VKVFDTSTLELRCQINLTAY  593 (660)
Q Consensus       521 ~l~~-~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~---I~iwd~~~~~~~~~~~~~~~  593 (660)
                      +++. +. +  ..|++||+.++... .+..   ........|+|||++|+.++.++.   ++++++. |+....+.    
T Consensus       344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~----  414 (429)
T PRK03629        344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP----  414 (429)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc----
Confidence            9987 42 2  35899999887643 3432   122346789999999999888754   7778875 44444444    


Q ss_pred             cCCCCcCcccceEEEEEec
Q 006126          594 AQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       594 ~~~gh~~~~v~~~~v~~sp  612 (660)
                         +| ...+.  ..+|+|
T Consensus       415 ---~~-~~~~~--~p~Wsp  427 (429)
T PRK03629        415 ---AT-DGQVK--FPAWSP  427 (429)
T ss_pred             ---cC-CCCcC--CcccCC
Confidence               22 23344  788887

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.50  E-value=1.3e-12  Score=122.18  Aligned_cols=149  Identities=11%  Similarity=0.107  Sum_probs=108.3

Q ss_pred             EEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--E-e
Q 006126          460 TCLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H  526 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~  526 (660)
                      ..+.|+|+|++|++-..          -+...+|.++...    .+...+.....   ++|.+++|+|+|+.+++  | .
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~---~~I~~~~WsP~g~~favi~g~~   81 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKE---GPIHDVAWSPNGNEFAVIYGSM   81 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCC---CceEEEEECcCCCEEEEEEccC
Confidence            35679999988765433          1335555553321    22221222222   47999999999999876  3 5


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLEL  603 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v  603 (660)
                      ++.|.+||++ ++.+..+.    ...+..+.|+|+|++|++++.+   |.|.+||+++.+.+.....         .   
T Consensus        82 ~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------~---  144 (194)
T PF08662_consen   82 PAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------S---  144 (194)
T ss_pred             CcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---------C---
Confidence            6799999996 77766662    5677899999999999998754   6799999998888776541         1   


Q ss_pred             ceEEEEEecCCCCEEEEEeC------CCeEEEEeCC
Q 006126          604 YPLVIAAHPLEPNRIALGLT------NGRVHVIEPL  633 (660)
Q Consensus       604 ~~~~v~~sp~d~~~l~s~s~------Dg~v~iw~~~  633 (660)
                      .++.++|+| ||++|++++.      |+.++||+..
T Consensus       145 ~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  145 DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEec
Confidence            245899999 8999999874      7899999985

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3.2e-10  Score=109.38  Aligned_cols=281  Identities=11%  Similarity=0.059  Sum_probs=179.7

Q ss_pred             CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEEeccCCceeeeeeccceeEEEe
Q 006126          283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY  359 (660)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      ...|.+|++.+.  .+.+....+-.  +.+.++-++|+|++++|.++-.+   |.|.-|.++                  
T Consensus        15 s~gI~v~~ld~~--~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------   72 (346)
T COG2706          15 SQGIYVFNLDTK--TGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------   72 (346)
T ss_pred             CCceEEEEEeCc--ccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence            366999999842  23333222222  67889999999999999988765   566666544                  


Q ss_pred             cCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCC-CeEEEE--EcCCCCC----------eEEEE
Q 006126          360 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT--FANPPPI----------ATYFI  422 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~-~~~~~~--~~~~~~~----------v~~v~  422 (660)
                       ..+|.+...-.......+-..++++  +++++++.  .|.|.++-++. |.....  ...|...          +.+..
T Consensus        73 -~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~  151 (346)
T COG2706          73 -PDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN  151 (346)
T ss_pred             -CCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence             3333321110000122333677888  88999988  69999999965 433222  1123333          77889


Q ss_pred             EcCCC-eEEEEeC-CCeEEEEeCCCCceeeEee---ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--Ceeeece
Q 006126          423 LLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSK  494 (660)
Q Consensus       423 ~sp~~-~l~s~~~-d~~I~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~  494 (660)
                      +.|++ ++++..- --.|.+|++..|+....-.   .....-+.|.|+|++++....++ +++|.+|....  ++...-.
T Consensus       152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence            99999 6666553 3379999999776532211   24456788999999999877665 89999999987  3332223


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCC--CceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      .+.+++.+... ..+...+.++|||++|.++  ....|.+|.+..  +++...-....+........|+++|++|+++..
T Consensus       232 ~i~tlP~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         232 TIDTLPEDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             eeccCccccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            33333333221 1467789999999999997  345788887653  332211111123455778999999999998887


Q ss_pred             C-CeEEEEECC--CCeeEEE
Q 006126          571 S-GHVKVFDTS--TLELRCQ  587 (660)
Q Consensus       571 d-g~I~iwd~~--~~~~~~~  587 (660)
                      + ..|.+|.++  +|++...
T Consensus       311 ~sd~i~vf~~d~~TG~L~~~  330 (346)
T COG2706         311 KSDNITVFERDKETGRLTLL  330 (346)
T ss_pred             CCCcEEEEEEcCCCceEEec
Confidence            6 568888654  5655443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=5e-12  Score=134.35  Aligned_cols=210  Identities=16%  Similarity=0.114  Sum_probs=136.9

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  470 (660)
                      ..|.++|.. |...+.+..+...+.+.+|+||| .|+..+.+   ..|++||+.+++... +....+.+.+..|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            467777774 55555566677788999999999 77766643   369999999886543 3334455678899999998


Q ss_pred             EEE-EeCCCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEE--eCCCCceeee
Q 006126          471 LVS-SGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY--EAPTLNHTSQ  543 (660)
Q Consensus       471 l~s-~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iw--d~~~~~~~~~  543 (660)
                      |+. .+.+|...+|.+  .++.      ...+ ..+.   .......|+|||+.|+. + .++...+|  ++.++... .
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~------~~~l-t~~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~  322 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG------LRRL-TQSS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-R  322 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC------cEEC-CCCC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-E
Confidence            874 567777666654  4422      1211 1222   34567889999999887 4 33444444  55555432 2


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      +...  .......+|||||++|+..+.++   .|++||+.+++.... ..      +  . ...  .+.|+| ||++|+.
T Consensus       323 lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~------~--~-~~~--~p~~sp-dg~~l~~  387 (427)
T PRK02889        323 VTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD------T--T-RDE--SPSFAP-NGRYILY  387 (427)
T ss_pred             EecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC------C--C-Ccc--CceECC-CCCEEEE
Confidence            2221  23344678999999999776654   699999998875432 21      1  1 122  689999 8998888


Q ss_pred             EeCCC---eEEEEeC
Q 006126          621 GLTNG---RVHVIEP  632 (660)
Q Consensus       621 ~s~Dg---~v~iw~~  632 (660)
                      ++.++   .+.+.++
T Consensus       388 ~~~~~g~~~l~~~~~  402 (427)
T PRK02889        388 ATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEecCCCEEEEEEEC
Confidence            77554   3445555

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=6.7e-12  Score=119.01  Aligned_cols=286  Identities=12%  Similarity=0.103  Sum_probs=177.8

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceee-eecCC----------CCCCCCeEEEEEecCCC--EEEEEECCC
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPD----------NSFGGRVVRLIYSHSGD--FLVALTQTA  333 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~l~~----------~~h~~~V~~~~~spdg~--~l~s~s~dg  333 (660)
                      .+.|...|.+||+|..+|.|.++.-+..... +..- ..+..          -.-...|..+.|.++++  .++..+.|.
T Consensus        30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk  108 (433)
T KOG1354|consen   30 AVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK  108 (433)
T ss_pred             eEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence            3588999999999999999999976542211 1111 11111          00134688899998764  567778899


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEc
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFA  412 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~  412 (660)
                      +|++|.+........               +.-..   .++....+.++..-    +.+. +-.+      ...+.+.+.
T Consensus       109 tiKlWKi~er~~k~~---------------~~~~~---~~~~~~~~~~lr~p----~~~~~~~~v------ea~prRv~a  160 (433)
T KOG1354|consen  109 TIKLWKIRERGSKKE---------------GYNLP---EEGPPGTITSLRLP----VEGRHDLEV------EASPRRVYA  160 (433)
T ss_pred             ceeeeeeeccccccc---------------ccccc---ccCCCCccceeece----eecccccee------eeeeeeecc
Confidence            999999865543211               00000   00122222222211    0000 1000      012344443


Q ss_pred             -CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc-e--eeEeecc-----CCCeEEEEEeCC-CCEEEEEeCCCcEE
Q 006126          413 -NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-T--KAKLKGH-----QNRITCLAYSLS-LNVLVSSGADAQLC  481 (660)
Q Consensus       413 -~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~-~--~~~~~~~-----~~~v~~l~~sp~-~~~l~s~s~dg~i~  481 (660)
                       .|...|+++.++.|+ .++++ +|=.|-+|+++--. .  +.-++.+     ..-|++..|+|. .+.++..+..|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence             788889999999999 66655 57789999976322 1  1122222     346788899994 56788889999999


Q ss_pred             EEEcCCCeee-e-ceeeeeeeeccC------CCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCceeeeecCCCC---
Q 006126          482 VWDAVGWKKL-C-SKFLHSFQTGLV------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQLVPDKM---  549 (660)
Q Consensus       482 vwd~~~~~~~-~-~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~-~~~~~~~~~~~~~~---  549 (660)
                      +-|++....- . .+... .+....      ...+.|..+.|+++|+|+++-.--+|++||+ ...+++.+++.+..   
T Consensus       240 LcDmR~~aLCd~hsKlfE-epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFE-EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             Eeechhhhhhcchhhhhc-cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence            9999953210 0 00000 000000      0014688899999999999876689999999 45677777665321   


Q ss_pred             -------CC---CeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          550 -------DL---PITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       550 -------~~---~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                             ..   .-..++|+.++.++++|+..+.+++|+...|.
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                   12   23458999999999999999999999966553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.48  E-value=5.7e-12  Score=117.90  Aligned_cols=153  Identities=16%  Similarity=0.189  Sum_probs=106.9

Q ss_pred             EEEEcCCC-eE-EEEeC--C-------CeEEEEeCCC-CceeeEeec-cCCCeEEEEEeCCCCEEEEE--eCCCcEEEEE
Q 006126          420 YFILLPQD-LF-AFGFD--D-------SSILVHCPCT-KKTKAKLKG-HQNRITCLAYSLSLNVLVSS--GADAQLCVWD  484 (660)
Q Consensus       420 ~v~~sp~~-~l-~s~~~--d-------~~I~iwd~~~-~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~--s~dg~i~vwd  484 (660)
                      .+.|+|+| .| +....  |       +...+|.++. +.....+.- ..++|.+++|+|+|+.+++.  ..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            67899999 33 33321  1       2344444422 233444433 34579999999999987654  4578999999


Q ss_pred             cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee---cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126          485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                      ++.      ..+.++.   .   ..++.+.|+|+|+++++ +.   .|.|.+||+++.+.+....    ...++.++|+|
T Consensus        90 ~~~------~~i~~~~---~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsP  153 (194)
T PF08662_consen   90 VKG------KKIFSFG---T---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSP  153 (194)
T ss_pred             Ccc------cEeEeec---C---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcC
Confidence            974      2333121   1   46789999999999998 42   4679999999888877763    34578999999


Q ss_pred             CCCEEEEEec------CCeEEEEECCCCeeEEEee
Q 006126          561 DGKCIYVSCK------SGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       561 dg~~l~sg~~------dg~I~iwd~~~~~~~~~~~  589 (660)
                      ||++++++..      |+.++||+.. |+++....
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9999998874      6889999985 66665543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.1e-11  Score=132.26  Aligned_cols=198  Identities=18%  Similarity=0.135  Sum_probs=135.4

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCC--eEEEEeC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP  443 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~--~I~iwd~  443 (660)
                      .+...+.+.+|+  |+.|+.++ +   ..|.+||+.+++... +........+..|+||| .++ +.+.++  .|++||+
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            466778899999  78888777 2   369999998877543 33334445578999999 554 555555  6999999


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      .+++. ..+..+........|+|||+.|+.++. +|.  |+++|+.+++.   ..+.  ..+     ......+|+|||+
T Consensus       280 ~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt--~~g-----~~~~~~~~SpDG~  348 (433)
T PRK04922        280 GSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT--FQG-----NYNARASVSPDGK  348 (433)
T ss_pred             CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee--cCC-----CCccCEEECCCCC
Confidence            88764 445555555677899999999887764 444  66677766432   1111  112     2344689999999


Q ss_pred             EEEE-Eec-C--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEe
Q 006126          521 HLLS-IHE-G--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQI  588 (660)
Q Consensus       521 ~l~~-~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~  588 (660)
                      +++. +.+ +  .|.+||+.+++.. .+..   ........|+|||++++..+.+   +.|+++++..+ ....+
T Consensus       349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l  418 (433)
T PRK04922        349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL  418 (433)
T ss_pred             EEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence            9987 332 2  6999999887754 3332   2234567999999998877664   46888888644 34444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=7.8e-12  Score=120.72  Aligned_cols=250  Identities=13%  Similarity=0.074  Sum_probs=176.9

Q ss_pred             CCCeEEEEEecCCC--EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCE
Q 006126          311 GGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~--~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  388 (660)
                      ...|..++|.-+++  .+...+.|..+..+.+.....         ...+|+..+-.        ....+|..++..+..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~---------~s~~~~~~~~~--------l~~~~I~gl~~~dg~  117 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI---------SSSLDDAKTVS--------LGTKSIKGLKLADGT  117 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCcc---------ccccccccccc--------cccccccchhhcCCE
Confidence            56788888876654  455555666666555544432         11234433211        345667777777566


Q ss_pred             EEEEe-CCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC--eEEEEeCC--CeEEEEeCCCCceeeEeec-----
Q 006126          389 LFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDD--SSILVHCPCTKKTKAKLKG-----  454 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d--~~I~iwd~~~~~~~~~~~~-----  454 (660)
                      |++|- +|.+.+|..+.+.    .+..+..+ .++..+.-++..  .+++|+..  ..+.+||+++.+.+..-+.     
T Consensus       118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~  196 (412)
T KOG3881|consen  118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR  196 (412)
T ss_pred             EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence            66666 8999999988543    22233322 445566666666  67779988  7899999997744432221     


Q ss_pred             ----cCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126          455 ----HQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  527 (660)
Q Consensus       455 ----~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d  527 (660)
                          -.-.++++.|-+.  ...|++++.-+.+++||.+.++    .++..+.-..    ..++++...|+|++++++ .-
T Consensus       197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E----~~is~~~l~p~gn~Iy~gn~~  268 (412)
T KOG3881|consen  197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE----NPISSTGLTPSGNFIYTGNTK  268 (412)
T ss_pred             ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc----CcceeeeecCCCcEEEEeccc
Confidence                1124568889886  7889999999999999999754    4444233222    579999999999999997 77


Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ  587 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~  587 (660)
                      +.+..||++.++....... +..+.|.++..+|.++++++++-|..|||+|+.+.+++..
T Consensus       269 g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  269 GQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             chhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            9999999999988776333 2488999999999999999999999999999999666544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=6.2e-12  Score=121.42  Aligned_cols=216  Identities=15%  Similarity=0.128  Sum_probs=159.7

Q ss_pred             CCEEEEEeCCCcEEEEeccCcC-CCcceeeeecCCCCCCCCeEEEEEecCCCEEEE-EECC--CcEEEEeccCCceeeee
Q 006126          274 ADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQT--ATHKLWKWQSNKQSLEE  349 (660)
Q Consensus       274 g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s-~s~d--g~i~vw~~~~~~~~~~~  349 (660)
                      .-.|++|-.+|.+.+|..+.+. .......+.     -..++..+.-+|..+++++ ||..  ..+.+||++..+     
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-----  184 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-----  184 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeee-----cCCceeeeccCCCCCceEecCchhcccceeeeecccce-----
Confidence            3467788899999999987321 012222221     2456777777776665555 7777  889999998885     


Q ss_pred             eccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C---CEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEE
Q 006126          350 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL  423 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~---~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~  423 (660)
                             ++|..+.-.--..-+  .-.-.++++.|- +   ..|+++. -+.+++||...+ +++..|.....+++++..
T Consensus       185 -------qiw~aKNvpnD~L~L--rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  185 -------QIWSAKNVPNDRLGL--RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL  255 (412)
T ss_pred             -------eeeeccCCCCccccc--eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence                   467654322100000  112234566666 4   5788888 799999999875 467888888899999999


Q ss_pred             cCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          424 LPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      .|++ .|++|...+.+..||+++++.... +.+..+.|+++..+|.+.++++++-|+.+||+|+.+...+....+.    
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK----  331 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK----  331 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh----
Confidence            9999 999999999999999999988876 8889999999999999999999999999999999995443333333    


Q ss_pred             ccCCCCCCeEEEEEecC
Q 006126          502 GLVPETTIVNHIQFHPD  518 (660)
Q Consensus       502 ~~~~~~~~v~~~~~sp~  518 (660)
                            +.++++.+.++
T Consensus       332 ------s~lt~il~~~~  342 (412)
T KOG3881|consen  332 ------SRLTFILLRDD  342 (412)
T ss_pred             ------ccccEEEecCC
Confidence                  45677777654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=3.5e-11  Score=120.94  Aligned_cols=324  Identities=11%  Similarity=0.060  Sum_probs=207.1

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .+.|||-|.||++-...| |.+|--..   -..++.+.     |. .|.-+.|||+.+||+|-+..-.+.=|+-..+   
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-----Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~---  281 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-----HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG---  281 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-----CC-CceeeecCCccceEEEecCCccccCcccCCC---
Confidence            369999999999998877 77887653   34555542     44 6999999999999999887543333331111   


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCe-EEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                             ..+.+||..+|.+.+....-.....+ .-+.||  ++++|.-....|.||+..+..++..-.-.-.+|....|
T Consensus       282 -------~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsw  354 (698)
T KOG2314|consen  282 -------QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSW  354 (698)
T ss_pred             -------ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCccc
Confidence                   12356666666654433210011122 235788  77888777889999998775544332334567889999


Q ss_pred             cCCC-eEEEEeCC-----CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-------C---CcEEEEEcCC
Q 006126          424 LPQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-------D---AQLCVWDAVG  487 (660)
Q Consensus       424 sp~~-~l~s~~~d-----~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-------d---g~i~vwd~~~  487 (660)
                      +|.+ .||--+..     ..+.+-.+-+++.+++-.-|+-.-..+.|-.+|.+|+.--.       .   ..+-|+.++.
T Consensus       355 sP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire  434 (698)
T KOG2314|consen  355 SPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE  434 (698)
T ss_pred             CCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence            9999 77654322     25677777777777766555544456778888888875321       1   1244555554


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--Ee--cCcEEEEeCCC-C---ceeeeecCCCCCCCeEEEEEc
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IH--EGQIDVYEAPT-L---NHTSQLVPDKMDLPITYATYS  559 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~--d~~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~s  559 (660)
                      ..    .++..+ .-.    ..|...+|-|.|..+++  +.  ..++.+|.+++ .   +.+..+    .....+.+.|+
T Consensus       435 Kd----Ipve~v-elk----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfws  501 (698)
T KOG2314|consen  435 KD----IPVEVV-ELK----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWS  501 (698)
T ss_pred             cC----CCceee-ecc----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEc
Confidence            21    222211 111    47889999999999887  33  35799998873 2   223333    25667889999


Q ss_pred             cCCCEEEEEe---cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC------CCeEEEE
Q 006126          560 CDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVI  630 (660)
Q Consensus       560 ~dg~~l~sg~---~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~------Dg~v~iw  630 (660)
                      |.|++++.+.   ..|.+.++|+.-......-.+         .+ ...+.+.|.| .|+|++|++.      |..-+||
T Consensus       502 PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~---------eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~  570 (698)
T KOG2314|consen  502 PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP---------EH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIF  570 (698)
T ss_pred             CCCcEEEEEEecccccceEEEecchhhhhhccCc---------cc-cccccceECC-CCCEEEEeeehhhhccccceEEE
Confidence            9999998754   468899999985332222111         11 1134799999 7999999875      4456778


Q ss_pred             eCCC
Q 006126          631 EPLE  634 (660)
Q Consensus       631 ~~~~  634 (660)
                      +..-
T Consensus       571 tfqG  574 (698)
T KOG2314|consen  571 TFQG  574 (698)
T ss_pred             Eeec
Confidence            7764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=3e-11  Score=128.47  Aligned_cols=212  Identities=14%  Similarity=0.075  Sum_probs=138.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCeEE--EEeC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSIL--VHCP  443 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~~I~--iwd~  443 (660)
                      .+...+.+.+|+  |+.|+..+ +   ..|.+||+.+++... +......+.+.+|+||| .|+ +.+.++...  ++|+
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            466788899999  78888776 2   359999999887644 33334456688999999 665 566777644  4555


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      .++. ...+..+........|+|||+.++..+. +|...+|.+  .++..   ..+.  ..+     .......|+|||+
T Consensus       272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt--~~g-----~~~~~~~~SpDG~  340 (427)
T PRK02889        272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT--FTG-----SYNTSPRISPDGK  340 (427)
T ss_pred             CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe--cCC-----CCcCceEECCCCC
Confidence            5544 4555555556677889999999887664 456666655  34321   1111  112     2234678999999


Q ss_pred             EEEE-EecC---cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccc
Q 006126          521 HLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAY  593 (660)
Q Consensus       521 ~l~~-~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~  593 (660)
                      +|+. +.++   .|.+||+.+++.. .+..   ........|+|||++|+.++.++   .+++.++ ++.....+..+  
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--  413 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--  413 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--
Confidence            9987 4333   6999999887754 3332   22346789999999998877653   4666666 35545544321  


Q ss_pred             cCCCCcCcccceEEEEEec
Q 006126          594 AQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       594 ~~~gh~~~~v~~~~v~~sp  612 (660)
                            ...+.  ..+|+|
T Consensus       414 ------~g~~~--~p~wsp  424 (427)
T PRK02889        414 ------GGDVR--EPSWGP  424 (427)
T ss_pred             ------CCCCC--CCccCC
Confidence                  22233  678887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.41  E-value=1.2e-09  Score=112.76  Aligned_cols=243  Identities=15%  Similarity=0.164  Sum_probs=155.0

Q ss_pred             CeEEEEEe--CCEEEEEe-C----CcEEEEECCC--CeE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCC
Q 006126          378 SISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC  444 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~-d----g~I~iwd~~~--~~~--~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~  444 (660)
                      ....++++  +++|.++. .    +.|..|++..  ++.  +............++++|++ .++++. .+|.|.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            34556776  77777776 3    5788888765  333  33333344455679999999 666665 68899999998


Q ss_pred             C-CceeeE---ee----------ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCe--eeeceeeeeeeeccCCCC
Q 006126          445 T-KKTKAK---LK----------GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK--KLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       445 ~-~~~~~~---~~----------~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~  507 (660)
                      . |.....   +.          .......++.|+|+|+++++... ...|.+|++....  ......+. ...+     
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G-----  191 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VPPG-----  191 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CSTT-----
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cccC-----
Confidence            7 433222   21          12345789999999999887654 4579999997754  21111111 2222     


Q ss_pred             CCeEEEEEecCCcEEEE-E-ecCcEEEEeCC--CCc--eeeeecCC---CC-CCCeEEEEEccCCCEEEEEec-CCeEEE
Q 006126          508 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TLN--HTSQLVPD---KM-DLPITYATYSCDGKCIYVSCK-SGHVKV  576 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~--~~~--~~~~~~~~---~~-~~~v~~~~~s~dg~~l~sg~~-dg~I~i  576 (660)
                      .....++|+|+++++++ . .++.|.++++.  ++.  .++.+...   .. ......++++|||++|+++.. ++.|.+
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            56889999999999988 4 67889999987  443  22222211   11 236788999999999988765 578999


Q ss_pred             EECC--CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCC
Q 006126          577 FDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLES  635 (660)
Q Consensus       577 wd~~--~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~~~~  635 (660)
                      |++.  ++++...-...        ........++++| +|++|+++. .++.|.+|+++..
T Consensus       272 f~~d~~~g~l~~~~~~~--------~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVP--------TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             EEECTTTTTEEEEEEEE--------ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETT
T ss_pred             EEEecCCCceEEEEEEe--------CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCC
Confidence            9993  34443221111        1112355899999 899988777 5679999987543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=8.9e-11  Score=125.38  Aligned_cols=211  Identities=17%  Similarity=0.096  Sum_probs=141.6

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  470 (660)
                      ..|.++|... ...+.+..+...+.+.+|+||| .|+.++.+   ..|++||+.+++... +..+.+.+.++.|+|||+.
T Consensus       170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            3688888754 3345555566678899999999 77766543   479999999876543 3345566777899999997


Q ss_pred             EEEE-eCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeee
Q 006126          471 LVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQ  543 (660)
Q Consensus       471 l~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~  543 (660)
                      |+.. +.++  .|++||+.++...   .   +. .+.   .......|+|||+.|+. +. ++  .|+++|+.+++.. .
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~---~---l~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~  316 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT---R---LT-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R  316 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE---E---CC-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence            7654 4444  5888998875321   1   11 121   23456789999999886 42 22  6888898776643 3


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      +..  +...+....|+|+|++++.++.++   .|++||+.++.... +..      +  .. .  ....|+| |+++|+.
T Consensus       317 l~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~------~--~~-~--~~p~~sp-dg~~l~~  381 (417)
T TIGR02800       317 LTF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD------T--GL-D--ESPSFAP-NGRMILY  381 (417)
T ss_pred             eec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC------C--CC-C--CCceECC-CCCEEEE
Confidence            332  245567889999999999888775   79999998865432 221      0  11 1  2568999 8888887


Q ss_pred             EeCCC---eEEEEeCC
Q 006126          621 GLTNG---RVHVIEPL  633 (660)
Q Consensus       621 ~s~Dg---~v~iw~~~  633 (660)
                      ++.++   .+++.+..
T Consensus       382 ~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       382 ATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEeCCCcEEEEEEECC
Confidence            77654   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.40  E-value=5.8e-12  Score=126.04  Aligned_cols=213  Identities=16%  Similarity=0.142  Sum_probs=154.0

Q ss_pred             cCCCCEEEEEeCCCcEEEEeccCcCCCcceee-eecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEEeccCCceee-
Q 006126          271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSL-  347 (660)
Q Consensus       271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~l~~~~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~~~~~~-  347 (660)
                      .|+|--+..|-..|.+.+.|...    ..+.. +.....-.+..|+|+.|-|.+. .++++-.+|.+.++|..-..... 
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPIN----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecchh----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            56777888888889999988763    22211 1111111367899999999664 44455568999999763221110 


Q ss_pred             -----eeeccceeEEEecCCCC-ce-eeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126          348 -----EEENVNMESQLYQPSSK-LV-MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI  417 (660)
Q Consensus       348 -----~~~~~~~~~~~~~~~~~-~~-~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~  417 (660)
                           ......+.+..|..... .. .+..+   -.+.|..++|+  |.+||+.+ ||.++|||..+.+++..++..-+.
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG  334 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG  334 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCccceeEe---ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc
Confidence                 02222333333332221 11 11111   34578999999  99999999 999999999998888888888899


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC-----------------------------
Q 006126          418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----------------------------  467 (660)
Q Consensus       418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-----------------------------  467 (660)
                      ..|++|+||| +|++|+.|--|.||.+..++.+..=.+|++.|+.++|.|-                             
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~  414 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN  414 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence            9999999999 9999999999999999999999998999999999999830                             


Q ss_pred             ------C-------------CEEEEEeCCCcEEEEEcCCCee
Q 006126          468 ------L-------------NVLVSSGADAQLCVWDAVGWKK  490 (660)
Q Consensus       468 ------~-------------~~l~s~s~dg~i~vwd~~~~~~  490 (660)
                            +             .++.+.+.|..+.+||+.....
T Consensus       415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             CCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                  0             1467788899999999987443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.3e-10  Score=121.21  Aligned_cols=214  Identities=14%  Similarity=0.043  Sum_probs=140.5

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      .|.++|...+. .+.+..+...+....|+||| .|+..+.+   ..|++||+.+++... +....+.+....|+|||+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            47777876544 44555666778899999999 77665543   369999999886543 33334455678999999988


Q ss_pred             EE-EeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ec--CcEEEEeCCCCceeeee
Q 006126          472 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       472 ~s-~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~  544 (660)
                      +. .+.+|  .|++||+.++...   .+    ..+.   .......|+|||+.++. + .+  ..|+++|+.+++... +
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~---~l----t~~~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l  326 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS---RV----TNHP---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V  326 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE---Ec----ccCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence            74 44454  5888899885421   11    1222   34556889999998887 4 22  368888987776533 3


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ...  ........|+|||++|+..+.+ +  .|++||+.+++... +..      +  .. ..  ...|+| ||++++..
T Consensus       327 t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~------~--~~-~~--~p~~sp-dg~~i~~~  391 (430)
T PRK00178        327 TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD------T--SL-DE--SPSVAP-NGTMLIYA  391 (430)
T ss_pred             ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC------C--CC-CC--CceECC-CCCEEEEE
Confidence            221  2233467899999999877653 3  58899999886533 221      1  11 11  468999 88988776


Q ss_pred             eCC---CeEEEEeCCCCce
Q 006126          622 LTN---GRVHVIEPLESEV  637 (660)
Q Consensus       622 s~D---g~v~iw~~~~~~~  637 (660)
                      +.+   ..|.++++..+..
T Consensus       392 ~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        392 TRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             EecCCceEEEEEECCCCce
Confidence            644   3477777754433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=7.4e-10  Score=112.10  Aligned_cols=273  Identities=12%  Similarity=0.107  Sum_probs=176.9

Q ss_pred             CceeeEecCCCCEEEEEe-----C-----CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC
Q 006126          264 QSRESTSLPDADSAVCAK-----S-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA  333 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~-----~-----dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg  333 (660)
                      ......|||-|.+|.+=-     .     .-.+++|+++++.....++..      .... |+..|++|..+ ++--..+
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k------~Q~~-W~~qfs~dEsl-~arlv~n  146 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK------MQNG-WVPQFSIDESL-AARLVSN  146 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehh------hhcC-cccccccchhh-hhhhhcc
Confidence            444468999999887632     1     234789999852222222211      2333 89999999874 3333345


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C---CEEEEEe---C---CcEEEEECC
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS---G---GKISIFSLE  403 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~---~~l~s~~---d---g~I~iwd~~  403 (660)
                      .+.+|+..+.+.                     ....   -|...|..+.++ +   ..+|+--   +   +.|++|...
T Consensus       147 ev~f~~~~~f~~---------------------~~~k---l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~  202 (566)
T KOG2315|consen  147 EVQFYDLGSFKT---------------------IQHK---LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP  202 (566)
T ss_pred             eEEEEecCCccc---------------------eeee---eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence            677777654321                     1111   266778888888 4   3444422   2   479999876


Q ss_pred             CCeEEEEEc---CCCCCeEEEEEcCCC--eEE--EEeCCC---------eEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          404 TFQTLATFA---NPPPIATYFILLPQD--LFA--FGFDDS---------SILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       404 ~~~~~~~~~---~~~~~v~~v~~sp~~--~l~--s~~~d~---------~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      -......+.   -....-..+.|++-|  +|+  +...|.         ++++.++....+...+. -.++|.++.|+|+
T Consensus       203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s  281 (566)
T KOG2315|consen  203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPS  281 (566)
T ss_pred             cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCC
Confidence            322221111   111222367898877  333  333343         68888887444444443 4789999999999


Q ss_pred             CCEEEE--EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCcee
Q 006126          468 LNVLVS--SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHT  541 (660)
Q Consensus       468 ~~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~~~  541 (660)
                      |+.+++  |-.-..+.+||++.      .++..+..      ++-+++-|+|.|++++. |   -.|.|.|||+.+.+++
T Consensus       282 ~~EF~VvyGfMPAkvtifnlr~------~~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  282 GREFAVVYGFMPAKVTIFNLRG------KPVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             CCEEEEEEecccceEEEEcCCC------CEeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            987655  44567899999987      44443433      45678999999999987 5   3489999999998888


Q ss_pred             eeecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEECCCCeeEE
Q 006126          542 SQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRC  586 (660)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~------dg~I~iwd~~~~~~~~  586 (660)
                      ..+..    ..-+-+.|+|||.++++++.      |+.++||+.. |.++.
T Consensus       350 ~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~  395 (566)
T KOG2315|consen  350 AKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH  395 (566)
T ss_pred             ccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence            87743    34556899999999998875      6789999986 44443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=8.7e-10  Score=117.64  Aligned_cols=168  Identities=15%  Similarity=0.056  Sum_probs=105.6

Q ss_pred             EEEEEcCCC-eEE-EEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCeee
Q 006126          419 TYFILLPQD-LFA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKL  491 (660)
Q Consensus       419 ~~v~~sp~~-~l~-s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~vwd~~~~~~~  491 (660)
                      ...+|+||| .|+ +.+.++  .|+++|+.+++. ..+..+........|+|||+.++..+. ++  .|.++|+.+++..
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            357899999 554 455566  488889987764 344445556678899999998877664 33  4677787765421


Q ss_pred             eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126          492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  567 (660)
                         .+.  ..++     .....+|+|||++++. +. ++  .|.++|+.+++.. .+...   .......|+|||++|+.
T Consensus       344 ---~Lt--~~g~-----~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~  409 (448)
T PRK04792        344 ---RLT--FEGE-----QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIY  409 (448)
T ss_pred             ---EEe--cCCC-----CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEE
Confidence               111  1221     2345789999999987 43 33  5677888777653 33221   12224589999998887


Q ss_pred             EecC-C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126          568 SCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       568 g~~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp  612 (660)
                      .+.+ |  .+++++.. |.....+...        ...+.  ..+|+|
T Consensus       410 ~~~~~g~~~l~~~~~~-G~~~~~l~~~--------~g~~~--~p~Wsp  446 (448)
T PRK04792        410 STTYQGKQVLAAVSID-GRFKARLPAG--------QGEVK--SPAWSP  446 (448)
T ss_pred             EEecCCceEEEEEECC-CCceEECcCC--------CCCcC--CCccCC
Confidence            6554 3  47778874 5555555421        22233  678887

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=4.6e-11  Score=128.87  Aligned_cols=184  Identities=11%  Similarity=0.028  Sum_probs=144.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-----eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-----ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      .++.++.+..+.+||...+........ ...     ..-+.++++.-++++|+.-+.|.+|+....    ..+.  ...|
T Consensus       101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d----n~p~--~l~G  173 (967)
T KOG0974|consen  101 KIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED----NKPI--RLKG  173 (967)
T ss_pred             eEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc----CCcc--eecc
Confidence            788888899999999887766555442 221     122345667778999999999999998831    2222  4678


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      |.   +.|.++.++-||+++++ +.|.++++|++.+++..... .-.|...|..++|.|+  .++++++|.+.++|+.+.
T Consensus       174 He---G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~-~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  174 HE---GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT-GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             cC---CceEEEEEccCCcEEEEEecCcceeeeecccccccCcc-cccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            98   79999999999999999 79999999999998876522 2258999999999998  999999999999997664


Q ss_pred             CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          582 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      .+ ...+.       +|....++  .++.++ +....+|++.||.+++|+....
T Consensus       248 ~~-l~~y~-------~h~g~~iw--~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  248 TQ-LEVYD-------EHSGKGIW--KIAVPI-GVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ce-ehhhh-------hhhhccee--EEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence            44 33444       55556677  888888 7788999999999999998754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.30  E-value=3.1e-09  Score=111.66  Aligned_cols=277  Identities=11%  Similarity=0.036  Sum_probs=173.0

Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF  400 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iw  400 (660)
                      .+..+++++.+|.+..+|..+++.            +|....+...           ...+...+..++.++ +|.+..+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~~-----------~~~p~v~~~~v~v~~~~g~l~al  120 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKR------------LWRVDLDERL-----------SGGVGADGGLVFVGTEKGEVIAL  120 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcE------------eeeecCCCCc-----------ccceEEcCCEEEEEcCCCEEEEE
Confidence            366788888899998888877763            6654332211           112233466777777 9999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-----EEEEEeCCCCEEEEEe
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSSG  475 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~s~s  475 (660)
                      |..+|+.+............... .++.++.++.++.++.||.++|+.+..+......+     .+....  +..++.++
T Consensus       121 d~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~  197 (377)
T TIGR03300       121 DAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGF  197 (377)
T ss_pred             ECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEEC
Confidence            99999988776533221111111 23367778889999999999998877665432211     111122  24677888


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC---e-EEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCC
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL  551 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  551 (660)
                      .++.+..+|.++|+........ ...+... ...   + .+..+. ++..++++.++.++.||..+|+.+-.....   .
T Consensus       198 ~~g~v~ald~~tG~~~W~~~~~-~~~g~~~-~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~  271 (377)
T TIGR03300       198 AGGKLVALDLQTGQPLWEQRVA-LPKGRTE-LERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDAS---S  271 (377)
T ss_pred             CCCEEEEEEccCCCEeeeeccc-cCCCCCc-hhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeeccC---C
Confidence            8999999999998654332221 0111000 000   0 111121 343333468899999999999876655321   1


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                       .....  .++..++.++.||.|+.+|..+|+.+......     +  .....  ....   .+..+++++.||.|+++|
T Consensus       272 -~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~s--sp~i---~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       272 -YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLT--APAV---VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             -ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccc--cCEE---ECCEEEEEeCCCEEEEEE
Confidence             11122  35678888889999999999999887765311     1  11111  1111   356888899999999999


Q ss_pred             CCCCceeccCCCCc
Q 006126          632 PLESEVEWGKLPFT  645 (660)
Q Consensus       632 ~~~~~~~w~~~~~~  645 (660)
                      ..+++..|....+.
T Consensus       337 ~~tG~~~~~~~~~~  350 (377)
T TIGR03300       337 REDGSFVARLKTDG  350 (377)
T ss_pred             CCCCCEEEEEEcCC
Confidence            99999988765443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=6.9e-10  Score=118.44  Aligned_cols=210  Identities=14%  Similarity=0.099  Sum_probs=133.7

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      .|.++|..... .+.+......+.+..|+||| .|+..+. ++  .|++||+.+++... +....+......|+|||+.|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            56677765443 34455566778899999999 7766543 33  69999998876432 22223344578899999987


Q ss_pred             EE-EeCCCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ec--CcEEEEeCCCCceeeee
Q 006126          472 VS-SGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       472 ~s-~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~  544 (660)
                      +. .+.+|.  |++||+.+++..   .   +. .+.   ......+|+|||+.|+. + .+  ..|+++|+.+++... +
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~---~---lt-~~~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L  345 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALT---R---IT-RHR---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L  345 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeE---E---Cc-cCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E
Confidence            75 455664  778888875421   1   11 122   34567899999999887 4 23  358888887776533 3


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ...  .......+|+|||++|+..+.+ +  .|.++|+.+++... +..      +  .. ..  ...|+| ||++|+..
T Consensus       346 t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~------~--~~-d~--~ps~sp-dG~~I~~~  410 (448)
T PRK04792        346 TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS------T--RL-DE--SPSVAP-NGTMVIYS  410 (448)
T ss_pred             ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC------C--CC-CC--CceECC-CCCEEEEE
Confidence            221  2223457899999998876653 3  46667888876533 221      1  11 11  458999 78887765


Q ss_pred             eCC-Ce--EEEEeCC
Q 006126          622 LTN-GR--VHVIEPL  633 (660)
Q Consensus       622 s~D-g~--v~iw~~~  633 (660)
                      +.+ |.  +++++..
T Consensus       411 ~~~~g~~~l~~~~~~  425 (448)
T PRK04792        411 TTYQGKQVLAAVSID  425 (448)
T ss_pred             EecCCceEEEEEECC
Confidence            543 43  6667763

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.29  E-value=7e-09  Score=102.77  Aligned_cols=167  Identities=13%  Similarity=0.107  Sum_probs=129.9

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-eEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      |++++..+.|...+.+...+-.++.  ++...|.-..+..++ -++.|..|| .+-|+|.++++ ++.+...-+.|.++.
T Consensus       332 Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~  408 (668)
T COG4946         332 GDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVK  408 (668)
T ss_pred             CcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEE
Confidence            9999999999999998876655543  566778888888888 899999999 89999998775 455666778999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-----ecCcEEEEeCCCC
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTL  538 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----~d~~i~iwd~~~~  538 (660)
                      .+|+|++++.+.....+.+.|+.++...   .+   .....   +-|+.+.|||+++++|-+     ....|+++|+..+
T Consensus       409 vs~dGK~~vvaNdr~el~vididngnv~---~i---dkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         409 VSPDGKKVVVANDRFELWVIDIDNGNVR---LI---DKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EcCCCcEEEEEcCceEEEEEEecCCCee---Ee---ccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            9999999999999999999999997531   11   12222   579999999999999975     3357999999887


Q ss_pred             ceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126          539 NHTSQLVPDKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  567 (660)
                      +.....++   ...=.+-+|.|||++|+-
T Consensus       480 Kiy~vTT~---ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         480 KIYDVTTP---TAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             eEEEecCC---cccccCcccCCCCcEEEE
Confidence            77655543   333345577777776653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=3e-08  Score=96.02  Aligned_cols=250  Identities=14%  Similarity=0.158  Sum_probs=165.7

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCC--CeEEE--EEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEE
Q 006126          374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLET--FQTLA--TFANPPPIATYFILLPQD-LFAFGF-DDSSILVH  441 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~--~~~~~--~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iw  441 (660)
                      .+....+-++|+  ++.|.++. +   |.|..|.++.  |+...  .......+-+.++++++| .++++. ..|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            466778889999  66777776 3   6777777654  54432  222233333789999999 666665 45689999


Q ss_pred             eCCC-CceeeE--eeccCCC----------eEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          442 CPCT-KKTKAK--LKGHQNR----------ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       442 d~~~-~~~~~~--~~~~~~~----------v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                      -++. |.....  ...|.+.          +....+.|++++|++.+. -..|.+|++..|......... +..|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC-----
Confidence            8865 433221  2225444          888999999999988764 357999999987654444433 3333     


Q ss_pred             CCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCC-ce---eeee---cCC-CCCCCeEEEEEccCCCEEEEEec-CCeEEE
Q 006126          508 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL-NH---TSQL---VPD-KMDLPITYATYSCDGKCIYVSCK-SGHVKV  576 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~-~~---~~~~---~~~-~~~~~v~~~~~s~dg~~l~sg~~-dg~I~i  576 (660)
                      ...+.|.|+|++++..+ + -+++|.+|..... ..   ++++   ... ........+.+++||++|+++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            56789999999999988 5 7899999998763 22   2221   111 01455677889999999998765 357888


Q ss_pred             EECCC--CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEEeCCCCcee
Q 006126          577 FDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLESEVE  638 (660)
Q Consensus       577 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw~~~~~~~~  638 (660)
                      |.+..  +++. ......       ........+.++| ++++|+.++.| ..|.+|......++
T Consensus       271 f~V~~~~g~L~-~~~~~~-------teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         271 FSVDPDGGKLE-LVGITP-------TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             EEEcCCCCEEE-EEEEec-------cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCce
Confidence            87764  3322 222110       1223344789999 78998888865 47899887665543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.28  E-value=1.1e-08  Score=107.55  Aligned_cols=296  Identities=10%  Similarity=0.052  Sum_probs=180.8

Q ss_pred             CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeecc
Q 006126          273 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV  352 (660)
Q Consensus       273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~  352 (660)
                      .+..+++++.+|.+.-+|..++   ...-+..+..     .+.. ....++..++.++.+|.+..+|..+++.       
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG---~~~W~~~~~~-----~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~-------  127 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETG---KRLWRVDLDE-----RLSG-GVGADGGLVFVGTEKGEVIALDAEDGKE-------  127 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCC---cEeeeecCCC-----Cccc-ceEEcCCEEEEEcCCCEEEEEECCCCcE-------
Confidence            3668888888899999997642   2222333322     1111 1122567788888899999998877764       


Q ss_pred             ceeEEEecCCCCceeeecccCCCCCCeEE-EEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeE-----EEEEcC
Q 006126          353 NMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-----YFILLP  425 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~-----~v~~sp  425 (660)
                           +|....+            ..+.+ ....++.++.+. +|.+..||..+|+.+..+......+.     +... .
T Consensus       128 -----~W~~~~~------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~  189 (377)
T TIGR03300       128 -----LWRAKLS------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-A  189 (377)
T ss_pred             -----eeeeccC------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-E
Confidence                 5653321            11111 112355666666 89999999999998887764332211     1111 1


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeeEeeccC-C------CeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126          426 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-N------RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       426 ~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~------~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      ++.++.+..++.+..+|+++|+.+....... .      ....+.-+|  .+..+++++.+|.++.||..+++.......
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~  269 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA  269 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence            2367788889999999999998765432110 0      000010111  345788888899999999999764432221


Q ss_pred             eeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126          497 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~  575 (660)
                      .           .......  ++..+++ +.+|.++.+|..+++.+-...... .....+...  .+..+++++.+|.|+
T Consensus       270 ~-----------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       270 S-----------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFEGYLH  333 (377)
T ss_pred             C-----------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCCCEEE
Confidence            1           1112222  3445555 688999999999998765542211 112222222  467899999999999


Q ss_pred             EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                      ++|..+|+.+..+..+        ...+.. ...+.  + +.|..++.||.|+.|
T Consensus       334 ~~d~~tG~~~~~~~~~--------~~~~~~-sp~~~--~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       334 WLSREDGSFVARLKTD--------GSGIAS-PPVVV--G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEECCCCCEEEEEEcC--------CCcccc-CCEEE--C-CEEEEEeCCceEEEe
Confidence            9999999999887743        111221 22222  3 458888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=2.1e-09  Score=114.82  Aligned_cols=226  Identities=15%  Similarity=0.123  Sum_probs=142.0

Q ss_pred             cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEEeccCCceeeeeeccceeEEEecC
Q 006126          285 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQP  361 (660)
Q Consensus       285 ~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~  361 (660)
                      .|.++|..+    .....+.  .  +...+...+|+|||++|+.++.+   ..|.+|++.++..                
T Consensus       171 ~l~~~d~~g----~~~~~l~--~--~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~----------------  226 (417)
T TIGR02800       171 ELQVADYDG----ANPQTIT--R--SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR----------------  226 (417)
T ss_pred             eEEEEcCCC----CCCEEee--c--CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------
Confidence            467777653    2233321  1  46679999999999999988754   3677776655432                


Q ss_pred             CCCceeeecccCCCCCCeEEEEEe--CCEEEEE-e-CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC
Q 006126          362 SSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD  434 (660)
Q Consensus       362 ~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~  434 (660)
                           ....   .+...+.+++|+  ++.|+.. + ++  .|.+||+.++... .+..+........|+||| .|+..+.
T Consensus       227 -----~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~  297 (417)
T TIGR02800       227 -----EKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSD  297 (417)
T ss_pred             -----EEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence                 1111   244456678888  6666544 3 43  6999999877543 333444445567899999 7766554


Q ss_pred             C-C--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126          435 D-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETT  508 (660)
Q Consensus       435 d-~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  508 (660)
                      . +  .|+++|+.+++. ..+..+...+..+.|+|+|++++.++.++   .|.+||+.++..   ..+   ...     .
T Consensus       298 ~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l---~~~-----~  365 (417)
T TIGR02800       298 RGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVL---TDT-----G  365 (417)
T ss_pred             CCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEc---cCC-----C
Confidence            3 3  688889887664 34444556677889999999999888776   789999887432   111   111     1


Q ss_pred             CeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126          509 IVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATY  558 (660)
Q Consensus       509 ~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  558 (660)
                      ......|+|||+.|+. +.+   ..+++.+. ++.....+...  .+.+..++|
T Consensus       366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~--~g~~~~~~w  416 (417)
T TIGR02800       366 LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLG--NGDVREPAW  416 (417)
T ss_pred             CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC--CCCcCCCCC
Confidence            2345689999999887 433   24666665 45554544331  334444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.3e-09  Score=115.34  Aligned_cols=220  Identities=10%  Similarity=0.032  Sum_probs=136.0

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e--EE-EEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-L--FA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN  469 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~--l~-s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~  469 (660)
                      .|.+.|...+.. +.+......+.+-.|+||| .  ++ +...++  .|++.++.+++... +....+......|+|||+
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence            566777664433 3454455556778999998 4  32 333333  68888998776433 333444556789999999


Q ss_pred             EEEEEeC-CC----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCc--EEEEeCCC-Cc
Q 006126          470 VLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPT-LN  539 (660)
Q Consensus       470 ~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~--i~iwd~~~-~~  539 (660)
                      .|+..+. +|    .+..|++..+..  ..... +..+..   +.....+|+|||+.|+. + .++.  |+++++.. +.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~-lt~~~~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAI--GKPRR-LLNEAF---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCC--CcceE-eecCCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence            9887653 22    344477665311  01111 222221   23457899999998887 4 4454  55555542 23


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      ....+..  +...+....|||||++|+..+.+   ..|++||+.+++......       +  ...+.  ...|+| ||+
T Consensus       318 ~~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-------~--~~~~~--~p~wSp-DG~  383 (428)
T PRK01029        318 SPRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-------S--PENKE--SPSWAI-DSL  383 (428)
T ss_pred             ceEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-------C--CCCcc--ceEECC-CCC
Confidence            3333432  24566788999999998876543   469999999987654321       1  11223  789999 888


Q ss_pred             EEEEEeC---CCeEEEEeCCCCce
Q 006126          617 RIALGLT---NGRVHVIEPLESEV  637 (660)
Q Consensus       617 ~l~s~s~---Dg~v~iw~~~~~~~  637 (660)
                      +|+..+.   .+.|++|++..++.
T Consensus       384 ~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        384 HLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEEEEECCCCCceEEEEECCCCCE
Confidence            8775443   35688899987765

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.27  E-value=1.1e-10  Score=110.82  Aligned_cols=254  Identities=15%  Similarity=0.217  Sum_probs=169.5

Q ss_pred             CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEcCCC---eEEE
Q 006126          375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF  431 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~sp~~---~l~s  431 (660)
                      ...-+.++.|.  |++|++|. +|.|.++.-....     ....++.|.            ..|..+.|.+++   .++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            34568899999  99999999 8999998654322     334454443            356788999887   7888


Q ss_pred             EeCCCeEEEEeCCCCce-----------------------------------eeEe-eccCCCeEEEEEeCCCCEEEEEe
Q 006126          432 GFDDSSILVHCPCTKKT-----------------------------------KAKL-KGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       432 ~~~d~~I~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      .+.|.+|++|-+.....                                   .+.+ .+|.-.|+++.++.|+..++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            89999999998753211                                   1111 2477789999999999888875 


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeee----eccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceee----eec
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQ----TGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTS----QLV  545 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~----~~~  545 (660)
                      .|-.|.+|++.-...  ...+-.+.    +.-.   .-|++..|+|..-.+.+  ++.|+|++.|++...+..    .+.
T Consensus       183 DdLRINLWnlei~d~--sFnIVDIKP~nmEeLt---eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQ--SFNIVDIKPANMEELT---EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             cceeeeeccccccCC--ceeEEEccccCHHHHH---HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            478999998864211  11111011    1111   35788899996544333  588999999998432211    111


Q ss_pred             CCC----------CCCCeEEEEEccCCCEEEEEecCCeEEEEEC-CCCeeEEEeecccccCCC----CcCcccc-eEEEE
Q 006126          546 PDK----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT-STLELRCQINLTAYAQPG----TISLELY-PLVIA  609 (660)
Q Consensus       546 ~~~----------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~-~~~~~~~~~~~~~~~~~g----h~~~~v~-~~~v~  609 (660)
                      ...          --..|..+.|+++|+++++-.. -+|++||+ ...+++..++.|.+....    -+.+.++ -..++
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~  336 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS  336 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence            100          0346788999999999998532 68999999 456667777655332110    0111121 23688


Q ss_pred             EecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          610 AHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       610 ~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      |+. ++.+++||+....+++++...|.
T Consensus       337 ~sg-~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  337 WSG-NDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EcC-CcceEecccccceEEEecCCCCc
Confidence            998 78899999999999999976654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.27  E-value=1.7e-08  Score=101.66  Aligned_cols=273  Identities=13%  Similarity=0.068  Sum_probs=161.9

Q ss_pred             CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcEEEEeccCCceeeeeeccc
Q 006126          284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      ++|.+.|..+    .++... ++.   ......+ +||||+.|+.+..          +..|.+||..+.+....     
T Consensus        27 ~~v~ViD~~~----~~v~g~-i~~---G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-----   92 (352)
T TIGR02658        27 TQVYTIDGEA----GRVLGM-TDG---GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-----   92 (352)
T ss_pred             ceEEEEECCC----CEEEEE-EEc---cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-----
Confidence            7899999874    333321 211   1122234 9999998887766          57888887776654211     


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCe
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQDL  428 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~  428 (660)
                             ...+.--.  +  ........++++  |++|+...   +..|.+.|+.+++.+.++.-... ..-...++++.
T Consensus        93 -------i~~p~~p~--~--~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~  160 (352)
T TIGR02658        93 -------IELPEGPR--F--LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTF  160 (352)
T ss_pred             -------EccCCCch--h--hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCcc
Confidence                   11000000  0  011223356677  78888766   58999999999999988864321 11122222221


Q ss_pred             EEEEeCCCeEEEEeCC-CCcee----eEeeccCCCeE-EEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          429 FAFGFDDSSILVHCPC-TKKTK----AKLKGHQNRIT-CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       429 l~s~~~d~~I~iwd~~-~~~~~----~~~~~~~~~v~-~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      . +-+.||......+. +|+..    ..+.+...++. .-.|.+ +|+++..... |+|.+.|+..........+..+..
T Consensus       161 ~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~  238 (352)
T TIGR02658       161 F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE  238 (352)
T ss_pred             E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc
Confidence            1 22234433332221 12211    11111001110 003455 8877776665 999999976543332333331111


Q ss_pred             -----ccCCCCCCeEEEEEecCCcEEEE-Ee--c--------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-E
Q 006126          502 -----GLVPETTIVNHIQFHPDQIHLLS-IH--E--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-C  564 (660)
Q Consensus       502 -----~~~~~~~~v~~~~~sp~~~~l~~-~~--d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~  564 (660)
                           +-.+  +...-++++|+++.+++ ..  .        +.|.++|..+++.+..+..   ...+..++++|||+ +
T Consensus       239 ~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       239 AEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPL  313 (352)
T ss_pred             cccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeE
Confidence                 1122  45556999999999887 31  2        4799999999999999875   56899999999999 8


Q ss_pred             EEEEe-cCCeEEEEECCCCeeEEEee
Q 006126          565 IYVSC-KSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       565 l~sg~-~dg~I~iwd~~~~~~~~~~~  589 (660)
                      |++.. .++.|.++|..+++.+..+.
T Consensus       314 lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEeCCCCCcEEEEECcCCeEEeeec
Confidence            87666 47889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=2e-09  Score=115.13  Aligned_cols=193  Identities=12%  Similarity=0.082  Sum_probs=129.5

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCC--eEEEEeC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP  443 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~--~I~iwd~  443 (660)
                      .+...+....|+  |+.|+..+ +   ..|.+||+.+++... +......+....|+||| .|+ +.+.++  .|++||+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            366778899999  88887776 3   369999999886543 33333445578999999 665 454454  6899999


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      .+++.. .+..+........|+|||+.++..+. +|  .|+++|+.+++..   .+.  ..+     .......|+|||+
T Consensus       275 ~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt--~~~-----~~~~~~~~Spdg~  343 (430)
T PRK00178        275 ASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVT--FVG-----NYNARPRLSADGK  343 (430)
T ss_pred             CCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Eee--cCC-----CCccceEECCCCC
Confidence            887643 45555556667889999998877664 33  5777888775421   111  111     1234578999999


Q ss_pred             EEEE-Ee-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC
Q 006126          521 HLLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL  582 (660)
Q Consensus       521 ~l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~  582 (660)
                      +++. +. ++  .|.+||+.+++. ..+...   .......|+|||++++..+.+   ..|+++++..+
T Consensus       344 ~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        344 TLVMVHRQDGNFHVAAQDLQRGSV-RILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEEEEEccCCceEEEEEECCCCCE-EEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            9987 32 33  588999988765 333321   122356899999999877654   35777787543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=5.6e-10  Score=115.33  Aligned_cols=296  Identities=12%  Similarity=0.133  Sum_probs=188.1

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      .....|++|+....|+|+||.||.++|-.+.+.........      +-.+.  .+......+||...|.-+.|+  ...
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g------laa~s--nLsmNQtLeGH~~sV~vvTWNe~~QK   85 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG------LAAAS--NLSMNQTLEGHNASVMVVTWNENNQK   85 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc------ccccc--ccchhhhhccCcceEEEEEecccccc
Confidence            56789999999999999999999999998876543211000      00000  111111234899999999999  556


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee-eEeeccCCCeEEEE
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLA  463 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~-~~~~~~~~~v~~l~  463 (660)
                      |-+.. +|.|.+|-+-.|.....+.  ...+.|.+++|+.|| .+.....||.|.+=.++..+.- +.+++  .....+.
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~  163 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL  163 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence            66666 8999999998876554433  334568899999999 9999999998887776643221 22332  2234678


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeee--cee-eeeeeeccCCCCCCeEEEEEe--------cCCcEEEEE-ecCcEE
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLC--SKF-LHSFQTGLVPETTIVNHIQFH--------PDQIHLLSI-HEGQID  531 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~~~s--------p~~~~l~~~-~d~~i~  531 (660)
                      |++|.+.++.+-.+|.+.++|....-..+  ..+ +. ...+.+.....|..+.|.        ||...++++ .+|.+.
T Consensus       164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn-~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN-GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ  242 (1189)
T ss_pred             ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe-eeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence            99999999888899999999986521110  001 11 111111001235555553        477788887 667777


Q ss_pred             EEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEECCCCeeEEEeecccccCCCCcCcc
Q 006126          532 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLE  602 (660)
Q Consensus       532 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~  602 (660)
                      +..-.+......+.   ....+..+.|+++|.+|+.++.+         +.|.+|.. -|+.+..+..+        +..
T Consensus       243 iMR~eND~~Pvv~d---tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp--------g~~  310 (1189)
T KOG2041|consen  243 IMRSENDPEPVVVD---TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP--------GSC  310 (1189)
T ss_pred             hhhhcCCCCCeEEe---cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC--------Cce
Confidence            77654433322332   25678899999999999998865         24555543 35555555532        223


Q ss_pred             cceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          603 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       603 v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                        +++++|-. .|-.+|.+ -|+.|++=++.
T Consensus       311 --It~lsWEg-~gLriA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  311 --ITGLSWEG-TGLRIAIA-VDSFIYFANIR  337 (1189)
T ss_pred             --eeeeEEcC-CceEEEEE-ecceEEEEeec
Confidence              34788876 46556555 35566554443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=1.3e-09  Score=101.69  Aligned_cols=270  Identities=14%  Similarity=0.075  Sum_probs=163.8

Q ss_pred             CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec---CCC-EEEEEECCCcEEEEeccCCceeeeeeccceeEEE
Q 006126          283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQL  358 (660)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp---dg~-~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~  358 (660)
                      -|.+.++++...+... ...+.-  . .++.+..+.|..   +|. .++-+-.+|.|.++........          ..
T Consensus        45 ~Gkl~Lys~~d~~~~~-l~~~q~--~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----------~~  110 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSP-LDTLQC--T-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----------VH  110 (339)
T ss_pred             ccceEEEeecccccCc-cceeee--e-cccccceeeeeeccCCccceeeeccccceEEEEeeccceee----------ee
Confidence            3667788877543333 111111  1 356677777763   444 4555666788888765433220          11


Q ss_pred             ecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCC--eEEE
Q 006126          359 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD--LFAF  431 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp~~--~l~s  431 (660)
                      ..+-+...+.       .....++.|+  +..++++. +|.+.+-+.......  ++++.|...++.+.|+...  .+.+
T Consensus       111 L~~ls~~ki~-------~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt  183 (339)
T KOG0280|consen  111 LRGLSSKKIS-------VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT  183 (339)
T ss_pred             ecccchhhhh-------heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence            1111111100       0123456666  66666666 788886665554443  4788999999999998776  8999


Q ss_pred             EeCCCeEEEEeCC-CCceeeE-eeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126          432 GFDDSSILVHCPC-TKKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  508 (660)
Q Consensus       432 ~~~d~~I~iwd~~-~~~~~~~-~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  508 (660)
                      |++|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.++++|+.|..|++||.++-    .+++.....+     +
T Consensus       184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~v~-----G  254 (339)
T KOG0280|consen  184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAKVG-----G  254 (339)
T ss_pred             cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCccc-----c
Confidence            9999999999998 3444433 445888999998877 6789999999999999999962    2333311111     6


Q ss_pred             CeEEEEEecCCc--EEEEEecCcEEEEeCCCCcee---eeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEE-EEECCC
Q 006126          509 IVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVK-VFDTST  581 (660)
Q Consensus       509 ~v~~~~~sp~~~--~l~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~-iwd~~~  581 (660)
                      .|..+.++|.-.  .++++.-+..+|.+...+..-   .......|..-++...|.....++++++ .|..++ +|-.-+
T Consensus       255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            899999999533  344455555667766543322   1111112455556666644445677754 355544 665444


Q ss_pred             C
Q 006126          582 L  582 (660)
Q Consensus       582 ~  582 (660)
                      +
T Consensus       335 ~  335 (339)
T KOG0280|consen  335 G  335 (339)
T ss_pred             C
Confidence            4

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=6.8e-10  Score=113.23  Aligned_cols=197  Identities=15%  Similarity=0.072  Sum_probs=149.5

Q ss_pred             ecCCCEEEEEECCCcEEEEeccCCceeee-----eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-----C-CE
Q 006126          320 SHSGDFLVALTQTATHKLWKWQSNKQSLE-----EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----G-SH  388 (660)
Q Consensus       320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~-~~  388 (660)
                      .|.+.|+|....||.+++|+...++....     ..+.......|...-+         .......+..+.     + ..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~---------~s~~k~~~~~~~~~~s~~t~~   72 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSAD---------YSPMKWLSLEKAKKASLDTSM   72 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEec---------cchHHHHhHHHHhhccCCceE
Confidence            35567999999999999999988876443     2222233344441100         011111222221     2 34


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      ++-|. .|.|.+|++..|+....+.  .|.+.|.++.++.+- .|.+++.|+.+..|+...++.+..+...+..+.+++.
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI  152 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence            56666 7999999999999988876  788999999998888 9999999999999999999999999998899999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-----CcEEEEE--ecCcEEEEeCC
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAP  536 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~--~d~~i~iwd~~  536 (660)
                      +|||..+++++  +.|++||+++.+     .+. .+.||.   +.|+++.|--+     |.+++++  .+..+.+|-+.
T Consensus       153 s~D~~~l~~as--~~ik~~~~~~ke-----vv~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  153 SPDGKILLTAS--RQIKVLDIETKE-----VVI-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             cCCCCEEEecc--ceEEEEEccCce-----EEE-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            99999999876  689999999943     333 678898   79999999887     8888884  55667777654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=1.9e-10  Score=124.29  Aligned_cols=184  Identities=14%  Similarity=0.113  Sum_probs=147.5

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe----EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v----~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                      ...++.+. ++.+.+||...+.....+.......    .-+.++++. ++++|+.-+.|.+|+......-..+.+|.+.|
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i  178 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI  178 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence            56677777 8999999998887777665443322    123345666 99999999999999987333333588999999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL  538 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~  538 (660)
                      ..+.|+-||+++++.|+|.++++|++.+.+...     -.--+|.   +.|..++|+|+  .+++ +.|.+.++|+. ++
T Consensus       179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~-~~  247 (967)
T KOG0974|consen  179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGV-NG  247 (967)
T ss_pred             EEEEEccCCcEEEEEecCcceeeeecccccccC-----ccccccc---ceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence            999999999999999999999999999965332     1344677   79999999998  6666 79999999977 56


Q ss_pred             ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          539 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      ..+.++..+ ....+..++..++...+++++.||.+++|++..
T Consensus       248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            666677653 378899999999999999999999999999764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.23  E-value=3.1e-09  Score=101.31  Aligned_cols=233  Identities=13%  Similarity=0.136  Sum_probs=152.2

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      ..-|-..-+++.+.|.++|||--.+   .++.-.- + .+....++.++.+.++...|+.|-.+|++.-+.+...-.   
T Consensus        31 ~l~~~e~gv~~~s~drtvrv~lkrd---s~q~wps-I-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn---  102 (404)
T KOG1409|consen   31 ILIPKEEGVISVSEDRTVRVWLKRD---SGQYWPS-I-YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN---  102 (404)
T ss_pred             eeccCCCCeEEccccceeeeEEecc---ccccCch-h-hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh---
Confidence            4455666788999999999997653   2222110 0 011467899999999999999999999987665432211   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP  425 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  425 (660)
                                    .-...+...  .|...|..+-|+  ..++++++ |..+.---.+.+..+..+.-     .+.+-.+
T Consensus       103 --------------km~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~  161 (404)
T KOG1409|consen  103 --------------KMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASAL  161 (404)
T ss_pred             --------------hcchhhhhh--hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-----eccCCCC
Confidence                          111122122  699999999999  77888888 66554333344333221110     0000000


Q ss_pred             CC---eEEEEeCCCeEEEEe--CCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126          426 QD---LFAFGFDDSSILVHC--PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       426 ~~---~l~s~~~d~~I~iwd--~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      +-   ....|...|.|..-.  ...-..+.++.+|.+.+.++.|.|....|.+|..|..+.+||+-..+.+     .-..
T Consensus       162 ~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-----~~el  236 (404)
T KOG1409|consen  162 QFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-----AYEL  236 (404)
T ss_pred             ceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-----eeee
Confidence            00   233444444444333  3344678889999999999999999999999999999999999764321     1134


Q ss_pred             eccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126          501 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL  538 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~  538 (660)
                      .+|.   ..|..+...+--+.+.+ +.||.|.+||++..
T Consensus       237 ~gh~---~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  237 QGHN---DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ccch---hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            5666   57888887777777777 69999999998643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=6.5e-09  Score=110.09  Aligned_cols=217  Identities=14%  Similarity=0.085  Sum_probs=129.7

Q ss_pred             CCCeEEEEEecCCCE--EE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          311 GGRVVRLIYSHSGDF--LV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       311 ~~~V~~~~~spdg~~--l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      ...+..-+|||||+.  ++ +...+|.-.||                   +.+..++...+..   ...+.....+|+  
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~-------------------~~~l~~g~~~~lt---~~~g~~~~p~wSPD  241 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIF-------------------LGSLENPAGKKIL---ALQGNQLMPTFSPR  241 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEE-------------------EEECCCCCceEee---cCCCCccceEECCC
Confidence            455677899999975  32 33334443333                   2233333222211   133344567888  


Q ss_pred             CCEEEEEe--CC----cEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCe--EEEEeCCC-CceeeE
Q 006126          386 GSHLFSAS--GG----KISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCPCT-KKTKAK  451 (660)
Q Consensus       386 ~~~l~s~~--dg----~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~--I~iwd~~~-~~~~~~  451 (660)
                      |+.|+..+  +|    .+..|++..+   +..+............+|+||| .|+..+ .+|.  |+++++.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            77887665  23    3444777653   3333333333344678999999 666555 4564  55555542 233444


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E--
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--  525 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~--  525 (660)
                      +..+...+....|+|||+.|+..+.+   ..|.+||+.+++..   .   +..+ .   ..+....|+|||+.|+. +  
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~---Lt~~-~---~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---Q---LTTS-P---ENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---E---ccCC-C---CCccceEECCCCCEEEEEECC
Confidence            55455667788999999998877653   36999999886531   1   1111 1   24667899999999886 3  


Q ss_pred             -ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC
Q 006126          526 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG  562 (660)
Q Consensus       526 -~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg  562 (660)
                       ....|+++|+..++.......   .+.+...+|+|-.
T Consensus       392 ~g~~~L~~vdl~~g~~~~Lt~~---~g~~~~p~Ws~~~  426 (428)
T PRK01029        392 SNESELYLISLITKKTRKIVIG---SGEKRFPSWGAFP  426 (428)
T ss_pred             CCCceEEEEECCCCCEEEeecC---CCcccCceecCCC
Confidence             235799999987765444322   4556678888754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.21  E-value=3.5e-09  Score=108.15  Aligned_cols=190  Identities=14%  Similarity=0.136  Sum_probs=137.1

Q ss_pred             cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe------c--------------CCCEEEEEE
Q 006126          271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT  330 (660)
Q Consensus       271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s------p--------------dg~~l~s~s  330 (660)
                      .|-+.++|....||.++||+...    .+.++---|...-++.-.+..|.      |              |...++-|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~----~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAK----NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccC----ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            35567899999999999999985    33322111110012333333332      1              111233333


Q ss_pred             CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeE
Q 006126          331 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT  407 (660)
Q Consensus       331 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~  407 (660)
                      ..|.|                     .+|+...|.+......++|.+.|.++.++  -..|.+++ |+.+..|+...+..
T Consensus        78 ~~g~v---------------------~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   78 PQGSV---------------------LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             CCccE---------------------EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence            34444                     45555555554444445799999999998  56788888 99999999999999


Q ss_pred             EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC-----CCEEEEE-eCCCcE
Q 006126          408 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVSS-GADAQL  480 (660)
Q Consensus       408 ~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s~-s~dg~i  480 (660)
                      ++.+......+.+++.+||| .+++++  +.|++||+++++.+.+|.||.++|+++.|..+     |.+++++ ..+..+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            99999999999999999999 888775  67999999999999999999999999999776     6666654 345667


Q ss_pred             EEEEcCC
Q 006126          481 CVWDAVG  487 (660)
Q Consensus       481 ~vwd~~~  487 (660)
                      .+|-+..
T Consensus       215 ~~w~v~~  221 (541)
T KOG4547|consen  215 TVWVVEK  221 (541)
T ss_pred             eEEEEEc
Confidence            7886655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.20  E-value=7.1e-08  Score=97.25  Aligned_cols=227  Identities=12%  Similarity=0.016  Sum_probs=141.7

Q ss_pred             CCcEEEEECCCCeEEEEEcCCCC-------CeEEEEEcCCC-eEEEEe-C-CCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          394 GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~~~-------~v~~v~~sp~~-~l~s~~-~-d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      ++.|.+||..+++.+..+.....       .-..++++||| ++++.. . +..|.+.|+.+++.+..+.-. +...-..
T Consensus        76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~  154 (352)
T TIGR02658        76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFP  154 (352)
T ss_pred             CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEE
Confidence            47899999999999988874322       22478999999 666555 3 789999999999988877642 2222222


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec-cCCCCCCeEEEEEec-CCcEEEEEecCcEEEEeCCC----
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPT----  537 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~~~~d~~i~iwd~~~----  537 (660)
                      .+++. ++ +-+.||......+.+.......... ++.+ +.+   -...-.|.+ +|+++.++..|.|.+.|+..    
T Consensus       155 t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~-vf~~~~~~---v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~  228 (352)
T TIGR02658       155 TANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTE-VFHPEDEY---LINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK  228 (352)
T ss_pred             ecCCc-cE-EEeecCceEEEEecCCCceEEeeee-eecCCccc---cccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence            22222 22 2234555444333321111111111 1111 100   000114566 89999988779999999643    


Q ss_pred             -CceeeeecCCC-----CCCCeEEEEEccCCCEEEEEe----------cCCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126          538 -LNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSC----------KSGHVKVFDTSTLELRCQINLTAYAQPGTISL  601 (660)
Q Consensus       538 -~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~  601 (660)
                       ......+....     ....+.-++++|+++.++...          ..+.|.++|..+++.+..+..         +.
T Consensus       229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~  299 (352)
T TIGR02658       229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GH  299 (352)
T ss_pred             ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CC
Confidence             33333322110     123334499999999888743          125799999999999998874         33


Q ss_pred             ccceEEEEEecCCCC-EEEEEe-CCCeEEEEeCCCCceec
Q 006126          602 ELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEW  639 (660)
Q Consensus       602 ~v~~~~v~~sp~d~~-~l~s~s-~Dg~v~iw~~~~~~~~w  639 (660)
                      ..+  .++++| |++ +|.+.. .++.|.+.|..+++..-
T Consensus       300 ~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       300 EID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             cee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence            344  899999 788 766555 67899999999987643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.20  E-value=9.4e-08  Score=94.96  Aligned_cols=142  Identities=13%  Similarity=0.086  Sum_probs=103.1

Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe-cCcEEE
Q 006126          455 HQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDV  532 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-d~~i~i  532 (660)
                      |.+.|.-..+.-+++-++.|..|| .+-++|.++++...       ..+.-   +.|.++..+|+|++++++. ...+.+
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-------~e~~l---g~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-------IEKDL---GNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-------eeCCc---cceEEEEEcCCCcEEEEEcCceEEEE
Confidence            455566666666777788899998 89999999965322       11222   5799999999999999974 468999


Q ss_pred             EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC----eEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126          533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      .|+.++.....-.  ...+-|+.+.|+|+++++|-+--+|    .|++||+.+++....-.+.     +      +-.+-
T Consensus       428 ididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-----a------~DfsP  494 (668)
T COG4946         428 IDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-----A------YDFSP  494 (668)
T ss_pred             EEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-----c------cccCc
Confidence            9999988633222  2367899999999999999877665    6899999998876654432     1      12256


Q ss_pred             EEecCCCCEEEE
Q 006126          609 AAHPLEPNRIAL  620 (660)
Q Consensus       609 ~~sp~d~~~l~s  620 (660)
                      +|.| |+++|--
T Consensus       495 aFD~-d~ryLYf  505 (668)
T COG4946         495 AFDP-DGRYLYF  505 (668)
T ss_pred             ccCC-CCcEEEE
Confidence            7777 6776543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=2.2e-08  Score=114.49  Aligned_cols=339  Identities=13%  Similarity=0.082  Sum_probs=189.8

Q ss_pred             CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126          264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      ....+.+.+|...++.+..+|.|.+...........+...-.    -..+|.+++||||++.|+..+.++++.+.+.   
T Consensus        77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~---  149 (928)
T PF04762_consen   77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALVTGEGNLLLMTR---  149 (928)
T ss_pred             cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEEeCCCEEEEEec---
Confidence            334458889999999999999999982221111222222111    3679999999999999999999999887542   


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcE--E-EEECCCC-eEEEEEcCCCCCe
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKI--S-IFSLETF-QTLATFANPPPIA  418 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I--~-iwd~~~~-~~~~~~~~~~~~v  418 (660)
                                    -|++-....+..... +. ..--.|.|- ...=+-|+.|.-  + .=|..-. .....+. ....-
T Consensus       150 --------------~fd~i~E~~l~~~~~-~~-~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~  212 (928)
T PF04762_consen  150 --------------DFDPISEVPLDSDDF-GE-SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGR  212 (928)
T ss_pred             --------------cceEEEEeecCcccc-CC-CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCc
Confidence                          222211111110000 01 111122222 111111110100  0 0000000 0001122 33445


Q ss_pred             EEEEEcCCC-eEEEEeC---C---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCC
Q 006126          419 TYFILLPQD-LFAFGFD---D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGW  488 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~---d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~  488 (660)
                      ..++|..|| +||+.+.   .   +.++||+-+ |....+-+.-.+--.+++|-|.|+++++...   ...|.+|.-+ |
T Consensus       213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G  290 (928)
T PF04762_consen  213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-G  290 (928)
T ss_pred             eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C
Confidence            589999999 8887764   2   479999954 7655555544444567899999999988764   3456666543 3


Q ss_pred             eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCC-CEE
Q 006126          489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDG-KCI  565 (660)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg-~~l  565 (660)
                      -....+.+.  .....   ..|..+.|++|+..|++.....|.+|-..+..-  .+.+... ....+..+.|+|.. ..|
T Consensus       291 LrhgeF~l~--~~~~~---~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  291 LRHGEFTLR--FDPEE---EKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             cEeeeEecC--CCCCC---ceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEE
Confidence            322233333  11222   579999999999999996555599999877542  2333322 13445559999854 456


Q ss_pred             EEEecCCeEEEEE----CCCCe--------eEEEeecc---------cccCC-C-C--cCcccceEEEEEecCCCCEEEE
Q 006126          566 YVSCKSGHVKVFD----TSTLE--------LRCQINLT---------AYAQP-G-T--ISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       566 ~sg~~dg~I~iwd----~~~~~--------~~~~~~~~---------~~~~~-g-h--~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      ...+.+|.+..++    +..+.        .+.++...         ..+|+ - +  -.-+-.+.+++|++ ++..+|+
T Consensus       365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~-~~~~~av  443 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP-SNSRFAV  443 (928)
T ss_pred             EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC-CCCeEEE
Confidence            6666656665443    22221        12222110         00000 0 0  00112255999999 6777999


Q ss_pred             EeCCCeEEEEeCCCC
Q 006126          621 GLTNGRVHVIEPLES  635 (660)
Q Consensus       621 ~s~Dg~v~iw~~~~~  635 (660)
                      -..||+|.+|.....
T Consensus       444 l~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  444 LTSDGSLSIYEWDLK  458 (928)
T ss_pred             EECCCCEEEEEecCC
Confidence            999999999997654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.15  E-value=6.7e-09  Score=97.07  Aligned_cols=245  Identities=14%  Similarity=0.054  Sum_probs=158.0

Q ss_pred             CCCeEEEEEe-----CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCC------CCeEEEEEcCCC-eEEEEeCCCeEEEE
Q 006126          376 KDSISCFALR-----GS-HLFSAS-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDDSSILVH  441 (660)
Q Consensus       376 ~~~v~~v~~s-----~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~------~~v~~v~~sp~~-~l~s~~~d~~I~iw  441 (660)
                      ...+..+.|.     |. .++-+. +|.|.++..........+.+-.      ....++.|++.+ .++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            3456666776     34 344444 7889888776444333333221      124578899999 99999999999866


Q ss_pred             eCCCCcee--eEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-
Q 006126          442 CPCTKKTK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-  517 (660)
Q Consensus       442 d~~~~~~~--~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-  517 (660)
                      +.......  +.++.|.-..+...|+. +.+.+.+|+.|+.+..||++...   ....+ ...-|.   ..|.++.-+| 
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~i~~-n~kvH~---~GV~SI~ss~~  221 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TFIWH-NSKVHT---SGVVSIYSSPP  221 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---ceeee-cceeee---cceEEEecCCC
Confidence            65554433  47889999999999976 44688999999999999999422   12222 233455   6788988886 


Q ss_pred             CCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCeeEEEeeccccc
Q 006126          518 DQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYA  594 (660)
Q Consensus       518 ~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~  594 (660)
                      .+.++++| .|..|++||.++ ++++..-..   .+.|+.+.++|.-. .++.++.-+-.+|-+...+.......  ...
T Consensus       222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~--~~s  296 (339)
T KOG0280|consen  222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIV--LPS  296 (339)
T ss_pred             CCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhee--eec
Confidence            57788885 999999999984 666655433   68899999998543 33333343446777766553331111  111


Q ss_pred             CCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEE-EEeCCCCc
Q 006126          595 QPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVH-VIEPLESE  636 (660)
Q Consensus       595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~-iw~~~~~~  636 (660)
                      ..+| ..-.+  .-.|.. ...+||||+ .|..++ +|-..+++
T Consensus       297 ~~~h-dSl~Y--G~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  297 DKIH-DSLCY--GGDWDS-KDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             cccc-cceee--cccccc-ccceeeeeeccccceeeeeeeccCC
Confidence            1133 22233  556655 245788876 677755 88776654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.15  E-value=4.4e-08  Score=98.30  Aligned_cols=281  Identities=12%  Similarity=0.068  Sum_probs=177.4

Q ss_pred             eecCCCCceeeEecCCCCEEEEEeCCC---------------cEEEEeccCcCCCcceeeeecCCCCCCCCeE-EEEEec
Q 006126          258 CFNDNNQSRESTSLPDADSAVCAKSLE---------------KSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSH  321 (660)
Q Consensus       258 ~~~~~~~~~~~~~spdg~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~-~~~~sp  321 (660)
                      .-..|.+.....|||.+++|.+=+..+               .+.+||...    +.+. ..++......-.| -+.|+-
T Consensus        67 ~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----g~iv-~sf~~~~q~~~~Wp~~k~s~  141 (561)
T COG5354          67 VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----GMIV-FSFNGISQPYLGWPVLKFSI  141 (561)
T ss_pred             eeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC----ceeE-eeccccCCcccccceeeeee
Confidence            444555566679999999999976543               489999974    3332 2233321222266 788999


Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEE-----
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA-----  392 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~-----  392 (660)
                      +.+|+|-. ....+.|+++ +...                     ...-+..-....+....|+    +..|+.-     
T Consensus       142 ~D~y~ARv-v~~sl~i~e~-t~n~---------------------~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~  198 (561)
T COG5354         142 DDKYVARV-VGSSLYIHEI-TDNI---------------------EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL  198 (561)
T ss_pred             cchhhhhh-ccCeEEEEec-CCcc---------------------ccCchhhccccceeeEEecCCCCCceEEEEccccC
Confidence            88887655 3346777765 2211                     1100000112446666666    2233332     


Q ss_pred             e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEE----e-------CCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          393 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----F-------DDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       393 ~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~----~-------~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                      + .+.+++|.+..+..+.+-.-....-..+.|.+.| .+++-    .       ....++++++.. ..+.....-.++|
T Consensus       199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pV  277 (561)
T COG5354         199 NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPV  277 (561)
T ss_pred             CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccc
Confidence            2 5789999998776665543223333468899988 33211    1       124678888873 3344433568899


Q ss_pred             EEEEEeCCCCEEEEE--eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee---cCcEEEE
Q 006126          460 TCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVY  533 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~---d~~i~iw  533 (660)
                      ..++|.|.++.+++.  ..+..+.++|++..      .....+.      ..-+.+.|+|.+++++. |.   .|.+-+|
T Consensus       278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------l~~~~Pe------~~rNT~~fsp~~r~il~agF~nl~gni~i~  345 (561)
T COG5354         278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN------LRFYFPE------QKRNTIFFSPHERYILFAGFDNLQGNIEIF  345 (561)
T ss_pred             eeeeecccCCceeEEecccccceeecccccc------eEEecCC------cccccccccCcccEEEEecCCccccceEEe
Confidence            999999988876654  46889999999982      1111222      24557899999999998 53   4789999


Q ss_pred             eCCCCceee-eecCCCCCCCeEEEEEccCCCEEEEEe------cCCeEEEEECCCCe
Q 006126          534 EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC------KSGHVKVFDTSTLE  583 (660)
Q Consensus       534 d~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~------~dg~I~iwd~~~~~  583 (660)
                      |......+. .+.    .....-+.|+|||+++.+..      .|..|.|||+....
T Consensus       346 ~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         346 DPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             ccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            987554443 442    33455578999999988764      36889999987543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=2.8e-10  Score=128.42  Aligned_cols=182  Identities=13%  Similarity=0.176  Sum_probs=142.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.-+|-..+.++|+.||.+++|....   ...+..+.-  .| ...|..+.|+.+|+.+..+..||.+.+|.......  
T Consensus      2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~---~~~v~~~rt--~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~-- 2285 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGH---GQQVVCFRT--AG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY-- 2285 (2439)
T ss_pred             ecCCCCCceEEecCCCceEEEEeccC---CCeEEEeec--cC-cchhhhhhhcccCCceeeeccCCceeecccCCcce--
Confidence            35567788999999999999999974   333443332  22 48999999999999999999999999998753221  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe----CCcEEEEECCCCe-EEEEEcCCCCCeEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLETFQ-TLATFANPPPIATYFI  422 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~----dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~  422 (660)
                               .-|.             .|......+.|-+..+++++    ++.+.+||..-.. .-..-..|..++++++
T Consensus      2286 ---------~s~q-------------chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2286 ---------TSWQ-------------CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred             ---------eccc-------------cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence                     1122             58888888888887777776    3789999964321 1111268999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      +-|.. .|++|+.+|.|++||++..+.++.+..         ++ ...++++|+..|.++||++....
T Consensus      2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence            99999 999999999999999998888877764         44 56789999999999999998843

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.12  E-value=5e-10  Score=126.54  Aligned_cols=174  Identities=14%  Similarity=0.225  Sum_probs=128.4

Q ss_pred             CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          394 GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      ||.|++|....+..+..++ ..+..|+.+.|+.+| .+..+..||.+.+|.+. .+.....+.|....+.+.|-.  ..+
T Consensus      2229 dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~ 2305 (2439)
T KOG1064|consen 2229 DGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLL 2305 (2439)
T ss_pred             CceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhh
Confidence            3444444433333333333 223677888999999 99999999999999977 556667777888888888864  556


Q ss_pred             EEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC
Q 006126          472 VSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD  547 (660)
Q Consensus       472 ~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~  547 (660)
                      ++++   .++.+.+||..-...  ...   +...|.   +.++++++-|..+.+++ |.+|.|++||++..+.+++++. 
T Consensus      2306 ~tag~s~d~~n~~lwDtl~~~~--~s~---v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~- 2376 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPM--NSL---VHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA- 2376 (2439)
T ss_pred             hccccCCCCCcccchhcccCcc--cce---eeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-
Confidence            6544   467899999765321  112   235676   78999999999999999 5999999999998887776632 


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                                +. ...++++|+..|.|+||++....++..++.
T Consensus      2377 ----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence                      44 567999999999999999998877777653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=1.1e-07  Score=110.83  Aligned_cols=255  Identities=11%  Similarity=0.033  Sum_probs=158.1

Q ss_pred             EEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEEEEcC-C-------------CCCeEEEEEcCCC-eEEEE-eCCCeEE
Q 006126          380 SCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFAN-P-------------PPIATYFILLPQD-LFAFG-FDDSSIL  439 (660)
Q Consensus       380 ~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~-~-------------~~~v~~v~~sp~~-~l~s~-~~d~~I~  439 (660)
                      ..++++  +. .+++-. ++.|.+||.. +..+..+.+ .             -..-..+++.+++ .|+++ ...+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            456776  44 444444 6899999986 444444432 1             1124678999887 55444 4567899


Q ss_pred             EEeCCCCceeeEeecc-----------------CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeecee--eeee
Q 006126          440 VHCPCTKKTKAKLKGH-----------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSF  499 (660)
Q Consensus       440 iwd~~~~~~~~~~~~~-----------------~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~  499 (660)
                      ++|+.++. +.++.+.                 -.....++++| ++..+++.+.++.|++||..++.......  ....
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            99987764 3333210                 11346789999 56667777788999999998754311000  0000


Q ss_pred             eeccCC---CCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecC-----------CC--------CCCCeEE
Q 006126          500 QTGLVP---ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVP-----------DK--------MDLPITY  555 (660)
Q Consensus       500 ~~~~~~---~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~-----------~~--------~~~~v~~  555 (660)
                      ..++..   .-.....++++|++..|++  +.++.|++||+.++.......+           ..        .-.....
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence            001000   0024567999999986665  3678999999987653211100           00        0113458


Q ss_pred             EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc-ccCCCC--cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA-YAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~~~gh--~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      ++++++|+.+++-+.++.|++||..++.......... ....|.  ...--.+..++++| +|+++++.+.+++|++||+
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence            9999999988888889999999999887654432100 000010  00011245899999 8999999999999999999


Q ss_pred             CCCce
Q 006126          633 LESEV  637 (660)
Q Consensus       633 ~~~~~  637 (660)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88753

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.10  E-value=4.8e-09  Score=100.05  Aligned_cols=239  Identities=13%  Similarity=0.139  Sum_probs=166.5

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEC-CCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC---
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSL-ETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---  444 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~-~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~---  444 (660)
                      ||.+.|+....-  ..-+++.+ |.++++|-- +.++.-..+. .-+.+++++.+.+.. .|++|-..|++.-+.+.   
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf  101 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF  101 (404)
T ss_pred             CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence            777777766655  66788888 899999954 3455444443 345678899999999 99999999999888654   


Q ss_pred             -CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          445 -TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       445 -~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                       .....+.+..|..++..+.|+-...++++.+.|..+.---.+.+.......+.          ...+++.+.-.  +..
T Consensus       102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----------~~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen  102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----------TPASALQFDAL--YAF  169 (404)
T ss_pred             hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----------ccCCCCceeeE--EEE
Confidence             33445666779999999999988899999999988865555665443332222          11111222211  233


Q ss_pred             EE-ecCcEEEEeC--CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          524 SI-HEGQIDVYEA--PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       524 ~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      .| ..|.|....+  ..-.++.++.+  |...+++++|.|....+.+|..|..|.+||+.-.+-+.-..      .|| .
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el------~gh-~  240 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL------QGH-N  240 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee------ccc-h
Confidence            34 4455544443  34455566654  79999999999999999999999999999997654333221      255 4


Q ss_pred             cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      +.+.  .+.+-+ .-..+.+++.||.|.+|+.+...
T Consensus       241 ~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  241 DKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhh--hhhhhh-hheeeeeccCCCeEEEEecccee
Confidence            4455  565555 56789999999999999997654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=5e-08  Score=101.26  Aligned_cols=273  Identities=10%  Similarity=0.072  Sum_probs=181.7

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceee----------eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT----------LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL  337 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~v  337 (660)
                      +.|.....++|+|+.||.+++-.+.+.........          .+|  .||...|.-+.|+.+.+.|-+...+|.|.|
T Consensus        20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL--eGH~~sV~vvTWNe~~QKLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL--EGHNASVMVVTWNENNQKLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh--ccCcceEEEEEeccccccccccCCCceEEE
Confidence            58999999999999999999998875332222111          123  459999999999999999999999999999


Q ss_pred             EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE-EEEcC
Q 006126          338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATFAN  413 (660)
Q Consensus       338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~-~~~~~  413 (660)
                      |-+-.+.-              -       ........++.|.+++|.  |..++... ||.|.+=.++..+.. +.+++
T Consensus        98 WmlykgsW--------------~-------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg  156 (1189)
T KOG2041|consen   98 WMLYKGSW--------------C-------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG  156 (1189)
T ss_pred             EeeecccH--------------H-------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch
Confidence            97654431              0       000111356678899999  88888888 888887776543221 11221


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-------ceeeE----eeccCCCeEEEEEe--------CCCCEEEE
Q 006126          414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-------KTKAK----LKGHQNRITCLAYS--------LSLNVLVS  473 (660)
Q Consensus       414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-------~~~~~----~~~~~~~v~~l~~s--------p~~~~l~s  473 (660)
                        .....+.|++|. .++.+-.+|.+.+||....       .+...    +......|-.+.|.        |+...|++
T Consensus       157 --~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav  234 (1189)
T KOG2041|consen  157 --QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV  234 (1189)
T ss_pred             --heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence              123468899999 8888888999999997632       11111    11122345566663        47778999


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec---------CcEEEEeCCCCceeee
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---------~~i~iwd~~~~~~~~~  543 (660)
                      +...|.+.+..-.+..    .++- +..|     -.+..+.|+++|..|++ |.+         +.|.+|.. -|..+.+
T Consensus       235 cy~nGr~QiMR~eND~----~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gt  303 (1189)
T KOG2041|consen  235 CYANGRMQIMRSENDP----EPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGT  303 (1189)
T ss_pred             EEcCceehhhhhcCCC----CCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEE
Confidence            9999998887554421    2222 2222     35888999999999998 432         24666665 5777777


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      ++.+  ...|++++|-..|-.++.+ -|+.|++=++
T Consensus       304 lkvp--g~~It~lsWEg~gLriA~A-vdsfiyfanI  336 (1189)
T KOG2041|consen  304 LKVP--GSCITGLSWEGTGLRIAIA-VDSFIYFANI  336 (1189)
T ss_pred             EecC--CceeeeeEEcCCceEEEEE-ecceEEEEee
Confidence            7664  6788999997766555543 2444444333

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1e-07  Score=100.29  Aligned_cols=209  Identities=10%  Similarity=0.021  Sum_probs=131.0

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e-EEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~-l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  470 (660)
                      .|.+-|.... ..+.+.... ......|+||| . ++..+.+   ..|+++|+.+++...... ..+......|+|||+.
T Consensus       170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        170 NIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             eEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            4555555433 334343333 67789999999 4 6644443   479999998886554333 4555667889999987


Q ss_pred             EEEEe-CC--CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec--C--cEEEEeCCCCceeee
Q 006126          471 LVSSG-AD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--G--QIDVYEAPTLNHTSQ  543 (660)
Q Consensus       471 l~s~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d--~--~i~iwd~~~~~~~~~  543 (660)
                      ++... .+  ..|.++|+.++..   ..+.   .. .   .......|+|||+.|+...+  +  .|+++|+.+++..+.
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~---~~LT---~~-~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTL---TQIT---NY-P---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcE---EEcc---cC-C---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            76543 33  4688889877542   1121   11 1   12335679999998887422  2  799999987776433


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      ...   ...  ...|||||++|+..+..         ..|++.|+.++... .+...     +    ...  ...|+| |
T Consensus       317 t~~---g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~----~~~--~p~~SP-D  378 (419)
T PRK04043        317 VFH---GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G----VNQ--FPRFSS-D  378 (419)
T ss_pred             ccC---CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C----CcC--CeEECC-C
Confidence            321   111  24899999998876543         36888899888643 33311     1    111  588999 8


Q ss_pred             CCEEEEEeCC-C--eEEEEeCCCC
Q 006126          615 PNRIALGLTN-G--RVHVIEPLES  635 (660)
Q Consensus       615 ~~~l~s~s~D-g--~v~iw~~~~~  635 (660)
                      |++++..+.+ +  .+.+.++...
T Consensus       379 G~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        379 GGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCEEEEEEccCCcEEEEEEecCCC
Confidence            9987766643 2  3556666543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.08  E-value=4.8e-08  Score=90.23  Aligned_cols=241  Identities=11%  Similarity=0.062  Sum_probs=157.7

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      ..+|+.|+ .|...+|...+.+. .+....+...|+-+.-.-+.  .+..++.|.++++.++.-+.....+....-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            45788887 89999999986543 33333444444322222233  6778899999999988755433222212223789


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH  540 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~  540 (660)
                      +++++|++++++.+....|..|.+......   .+.+......   ..-.+..|+.....+|+ ..||++.|||++....
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey---~~~~~~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEY---IENIYEAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccce---eeeeEecccC---CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence            999999999999999999999998764321   1111111111   34457889998888888 5999999999987543


Q ss_pred             eeee---cCCCCCCCeEEEEEccCC--CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126          541 TSQL---VPDKMDLPITYATYSCDG--KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP  615 (660)
Q Consensus       541 ~~~~---~~~~~~~~v~~~~~s~dg--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~  615 (660)
                      ....   ..+.|.+.+..+.|++-|  .+|+..-.-+.+.+-|++++...+.+.........|....+.  .-.|+. ++
T Consensus       238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n  314 (344)
T KOG4532|consen  238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-EN  314 (344)
T ss_pred             chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CC
Confidence            3221   123479999999999866  355555556889999999998887776554433333333344  566666 55


Q ss_pred             CEEEEEeCCCeEEEEeCCCCc
Q 006126          616 NRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       616 ~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .-+-+.+.+ .+.=|++.+..
T Consensus       315 ~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  315 ESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             cccccccch-hhheeeccccc
Confidence            555555544 35666666543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.07  E-value=1.8e-07  Score=109.16  Aligned_cols=258  Identities=9%  Similarity=-0.020  Sum_probs=157.4

Q ss_pred             EEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEE
Q 006126          315 VRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS  391 (660)
Q Consensus       315 ~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s  391 (660)
                      ..++++++ |..+++-+.++.|.+||..............     .....|..-.     .+-.....+++.  ++.|+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~-----~G~~dG~~~~-----a~f~~P~GIavd~~gn~LYV  640 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE-----EGLRDGSFED-----ATFNRPQGLAYNAKKNLLYV  640 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC-----cCCCCCchhc-----cccCCCcEEEEeCCCCEEEE
Confidence            46888875 5566666667889988875442211100000     0000011000     122335678887  666666


Q ss_pred             Ee--CCcEEEEECCCCeEEEEEcCC-----------------CCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceee
Q 006126          392 AS--GGKISIFSLETFQTLATFANP-----------------PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       392 ~~--dg~I~iwd~~~~~~~~~~~~~-----------------~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      +.  .+.|+++|..++. +.++.+.                 -..-..++++|+ + .+++.+.++.|++||..++... 
T Consensus       641 aDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-  718 (1057)
T PLN02919        641 ADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-  718 (1057)
T ss_pred             EeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-
Confidence            65  5789999988765 3333210                 012357899994 5 6777788899999998876542 


Q ss_pred             Eeecc---------------CCCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCCCeeeece---ee---eeeeec-cCC--
Q 006126          451 KLKGH---------------QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSK---FL---HSFQTG-LVP--  505 (660)
Q Consensus       451 ~~~~~---------------~~~v~~l~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~---~~---~~~~~~-~~~--  505 (660)
                      .+.+.               -.....++++|+++. +++-+.++.|++||+.++......   ..   .....+ ...  
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence            22211               123567999999985 455566789999999875421000   00   000000 000  


Q ss_pred             ---CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-----------CCCCCeEEEEEccCCCEEEEEec
Q 006126          506 ---ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       506 ---~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                         .-.....++++++|..+++ ..++.|++||..++.........           ..-.....++++++|+.+++-+.
T Consensus       799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence               0013458999999987777 58899999999876654322111           01235678999999998888888


Q ss_pred             CCeEEEEECCCCee
Q 006126          571 SGHVKVFDTSTLEL  584 (660)
Q Consensus       571 dg~I~iwd~~~~~~  584 (660)
                      ++.|++||+.+++.
T Consensus       879 Nn~Irvid~~~~~~  892 (1057)
T PLN02919        879 NSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEEECCCCcc
Confidence            99999999999865

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=1.3e-09  Score=109.56  Aligned_cols=271  Identities=12%  Similarity=0.131  Sum_probs=171.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeccCcCCC--cceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeee
Q 006126          272 PDADSAVCAKSLEKSVNLKLQLINEP--SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE  349 (660)
Q Consensus       272 pdg~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~  349 (660)
                      .+.+.+++++.|.+|++|.+....+.  ....+++..  .|+.+|..+.|-.+.++++++  ||.|.+||.--+..... 
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~--aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq-  819 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ--AHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQ-  819 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhh--hccCcccceeeeeccceeeec--cCcceeecccccchhHh-
Confidence            35567899999999999998742211  112233443  399999999999999887665  88999888543322100 


Q ss_pred             eccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEE-e-CCcEEEEECCCCeEEEEEc-----CCCCCeEEE
Q 006126          350 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQTLATFA-----NPPPIATYF  421 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~-~-dg~I~iwd~~~~~~~~~~~-----~~~~~v~~v  421 (660)
                             ..|+++.          +..+.|.|+.-- ...++.+ + ..+|+++|.+.++....++     +++..++++
T Consensus       820 -------~~dapk~----------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  820 -------MEDAPKE----------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             -------hhcCccc----------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence                   1233222          233344444433 3444444 4 7899999999887666554     445678999


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCeeeeceeeeee
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v-wd~~~~~~~~~~~~~~~  499 (660)
                      +..+.| +++.+-.+|.|.+.|.++|+.+..++...-....++ .|....++....|.++.+ |-.-.+...    ++ .
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh----~q-~  956 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH----LQ-D  956 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee----ec-c
Confidence            999999 999999999999999999999988876544444442 455667887788888888 877664321    11 0


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC----CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP----TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                      ....    .+..-  ...-|.-+++. ..+.+.+|.-.    ....+..+......+..++++--|-..-++.|.+.|.|
T Consensus       957 kppp----epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen  957 KPPP----EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred             CCCC----cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence            0000    00000  01124445554 33345565321    11223344444446778888888877777788888888


Q ss_pred             EE
Q 006126          575 KV  576 (660)
Q Consensus       575 ~i  576 (660)
                      .+
T Consensus      1031 aL 1032 (1034)
T KOG4190|consen 1031 AL 1032 (1034)
T ss_pred             ee
Confidence            75

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.04  E-value=1.4e-07  Score=92.17  Aligned_cols=225  Identities=17%  Similarity=0.110  Sum_probs=142.2

Q ss_pred             CCcEEEEECCCCeEEEEEcCC--CCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          394 GGKISIFSLETFQTLATFANP--PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      +|+|..||..+|+.+......  .....+.....++.+++++.++.++.||..+|+.+..+.. ...+.... ..++..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence            578999999999999887642  1222222232334777778999999999999998877764 22222111 2245567


Q ss_pred             EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC
Q 006126          472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD  550 (660)
Q Consensus       472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  550 (660)
                      ++++.++.++.+|..+|+........ .....    ..........++..++++ .++.|..+|+++|+.+.........
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE--SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             ccccceeeeEecccCCcceeeeeccc-ccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            77778899999999998765432111 00000    111222233336677774 6899999999999998777553211


Q ss_pred             --CC------eEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          551 --LP------ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       551 --~~------v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                        ..      +..-....++ .++.++.++.+.-+|+.+++.+.....         .. ..  . ...+ ++..++.++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---------~~-~~--~-~~~~-~~~~l~~~~  219 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI---------SG-IY--S-LPSV-DGGTLYVTS  219 (238)
T ss_dssp             SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS---------S--EC--E-CEEC-CCTEEEEEE
T ss_pred             CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC---------CC-cc--C-Ccee-eCCEEEEEe
Confidence              11      1222222344 777777787544449999996653321         11 11  1 1334 577888888


Q ss_pred             CCCeEEEEeCCCCceecc
Q 006126          623 TNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       623 ~Dg~v~iw~~~~~~~~w~  640 (660)
                      .++.|..||+.+|+.+|.
T Consensus       220 ~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  220 SDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCCCEEeE
Confidence            999999999999999995

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.03  E-value=5.7e-07  Score=94.96  Aligned_cols=258  Identities=9%  Similarity=-0.024  Sum_probs=156.6

Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEEEe-CCcEEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI  399 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-dg~I~i  399 (660)
                      ++..++.++.+|.+..+|.++++.            +|......            .+. .....+..++.+. ++.+..
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~------------~W~~~~~~------------~~~ssP~v~~~~v~v~~~~g~l~a  174 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEV------------AWQTKVAG------------EALSRPVVSDGLVLVHTSNGMLQA  174 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCC------------cccccCCC------------ceecCCEEECCEEEEECCCCEEEE
Confidence            345677788889988888877764            56543221            111 1122355666666 899999


Q ss_pred             EECCCCeEEEEEcCCCCCe-----EEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCC-------CeEEEEEeC-
Q 006126          400 FSLETFQTLATFANPPPIA-----TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------RITCLAYSL-  466 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v-----~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-------~v~~l~~sp-  466 (660)
                      +|..+|+.+..+.......     .+.... ++.++.++.++.+..+|..+|+.+........       ....+.-+| 
T Consensus       175 ld~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~  253 (394)
T PRK11138        175 LNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV  253 (394)
T ss_pred             EEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence            9999999988776432111     111111 23566778899999999999987654431100       011111122 


Q ss_pred             -CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126          467 -SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       467 -~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~  544 (660)
                       .+..++.++.+|.+..+|..+|+..-...+.           ....+..  ++..+++ +.++.+..+|..+|+.+-..
T Consensus       254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYG-----------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             EECCEEEEEEcCCeEEEEECCCCCEEEeecCC-----------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence             3456777788999999999998654332211           1112222  2344444 68899999999998875443


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                      .... .....+..+  .+..|+.++.||.|++.|..+|+.+......        ...+.. ....   .+..|..++.|
T Consensus       321 ~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s-~P~~---~~~~l~v~t~~  385 (394)
T PRK11138        321 SDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLS-EPVV---ADDKLLIQARD  385 (394)
T ss_pred             cccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCccee-CCEE---ECCEEEEEeCC
Confidence            2111 111222222  2567888999999999999999988877542        111221 1122   23478888999


Q ss_pred             CeEEEEeC
Q 006126          625 GRVHVIEP  632 (660)
Q Consensus       625 g~v~iw~~  632 (660)
                      |.|+.++.
T Consensus       386 G~l~~~~~  393 (394)
T PRK11138        386 GTVYAITR  393 (394)
T ss_pred             ceEEEEeC
Confidence            99998875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=1e-09  Score=110.29  Aligned_cols=220  Identities=13%  Similarity=0.147  Sum_probs=160.0

Q ss_pred             EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC-------CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          408 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       408 ~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      +..+.+|...|+.++--.+. -+++++.|++|++|.++.       ..+..++..|+.+|.++.|-.+.+++++  .||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            45677899988887766666 899999999999999874       2366778889999999999988888764  5899


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEE--EecCcEEEEeCCCCceeeeecCC---CCCCC
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS--IHEGQIDVYEAPTLNHTSQLVPD---KMDLP  552 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~---~~~~~  552 (660)
                      |.+||.--++........   ..|    +.+..+..-++  ...+++  +...+|+++|.+.+.....+...   ....-
T Consensus       806 iHlWDPFigr~Laq~~da---pk~----~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDA---PKE----GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL  878 (1034)
T ss_pred             ceeecccccchhHhhhcC---ccc----CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence            999998665433211111   111    33444444443  334444  37789999999988766555432   22466


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE-Ee
Q 006126          553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV-IE  631 (660)
Q Consensus       553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i-w~  631 (660)
                      +.+++..+.|++++++-.+|.|.+.|.++|+.+..+.+..          ...+.++ .| ..+.|+....|.++.+ |.
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-ap-sdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-AP-SDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-Cc-hhHHHHhhcccceeEeeeh
Confidence            8899999999999999999999999999999988876531          1111333 24 3467888888999999 99


Q ss_pred             CCCCceeccCCCCcccc
Q 006126          632 PLESEVEWGKLPFTDSR  648 (660)
Q Consensus       632 ~~~~~~~w~~~~~~~~~  648 (660)
                      ..++-..+...+|.|..
T Consensus       947 aldgimh~q~kpppepa  963 (1034)
T KOG4190|consen  947 ALDGIMHLQDKPPPEPA  963 (1034)
T ss_pred             hcCCeeeeccCCCCcch
Confidence            98888877777777654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.99  E-value=3.6e-09  Score=109.97  Aligned_cols=288  Identities=13%  Similarity=0.077  Sum_probs=179.0

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC--CCeEEEEEe---
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR---  385 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s---  385 (660)
                      .+++..+..+|.|+-+|.++.-|...+ |+...-.          +..       .+      .|.  -.|-.+.|+   
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~----------ppr-------~l------~h~tpw~vad~qws~h~   79 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFT----------PPR-------WL------HHITPWQVADVQWSPHP   79 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEE-eccCCCC----------Cce-------ee------eccCcchhcceecccCC
Confidence            678889999999999999988766543 3222111          011       11      122  224556666   


Q ss_pred             --CCEEEEEeCCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCC
Q 006126          386 --GSHLFSASGGKISIFSLETF---QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQN  457 (660)
Q Consensus       386 --~~~l~s~~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~  457 (660)
                        ..++++.+...-.+|++...   .....+.+|..+|+.+.|+|+.  .+++++.|..+..||+++- ..+..+..-..
T Consensus        80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s  159 (1081)
T KOG0309|consen   80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS  159 (1081)
T ss_pred             CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence              44566666667778887532   2333456999999999999998  9999999999999999875 34555555556


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEEecCcEEEEeC
Q 006126          458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEA  535 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~d~~i~iwd~  535 (660)
                      ....++|+.....+.+.+....|++||++.|.    .++. ...+|.   ..|+.+.|..-  +..+-++.|++|+.||.
T Consensus       160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~-s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLC-SLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             cCceeeecccCcchhhhccCCceEEEeccCCC----cceE-Eecccc---eeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence            67788998755455556777889999999864    3444 344566   67888888763  33333369999999998


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEE--EecCCeEEEEECCCCeeE---EEeecccccCCCCcCcccceEEEEE
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELR---CQINLTAYAQPGTISLELYPLVIAA  610 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--g~~dg~I~iwd~~~~~~~---~~~~~~~~~~~gh~~~~v~~~~v~~  610 (660)
                      ............ ...+|...++-|-|+-.++  .-.+..+.+++.++....   .......+...||.+. |-  .+-|
T Consensus       232 ~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~--eFlW  307 (1081)
T KOG0309|consen  232 SKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VL--EFLW  307 (1081)
T ss_pred             cccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH-HH--HHhh
Confidence            754322221111 2678888888886653332  112234444444332111   1111112222366332 22  3333


Q ss_pred             ecC---------CCCEEEEEeCCCeEEEEeCCC
Q 006126          611 HPL---------EPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       611 sp~---------d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      -..         ..-.|+|.+.|.++|+|-+.+
T Consensus       308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            220         122699999999999999875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=3.9e-07  Score=92.43  Aligned_cols=270  Identities=13%  Similarity=0.137  Sum_probs=172.9

Q ss_pred             CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126          313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF  390 (660)
Q Consensus       313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~  390 (660)
                      .-+.+.|||-|.||+|--.-| |.+|--+                     +-..++..   .| ..|.-+.||  .+||+
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~---------------------~f~r~~RF---~H-p~Vq~idfSP~EkYLV  265 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGE---------------------SFDRIQRF---YH-PGVQFIDFSPNEKYLV  265 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCc---------------------cHHHHHhc---cC-CCceeeecCCccceEE
Confidence            446799999999999987655 4456321                     11122211   24 347888888  77888


Q ss_pred             EEe-C-----------CcEEEEECCCCeEEEEEcCC--CCCe-EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126          391 SAS-G-----------GKISIFSLETFQTLATFANP--PPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG  454 (660)
Q Consensus       391 s~~-d-----------g~I~iwd~~~~~~~~~~~~~--~~~v-~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~  454 (660)
                      +-+ .           ..++|||+.+|...+.|...  ...+ .-+.||.|+ ++|.-.. .+|.||+..+..++..-.-
T Consensus       266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl  344 (698)
T KOG2314|consen  266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL  344 (698)
T ss_pred             EecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc
Confidence            854 1           47999999999999888753  2223 346899999 7776655 5788998766443322222


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec--
Q 006126          455 HQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--  527 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d--  527 (660)
                      .-..|....|+|.+..||.-+..     .++.+..+-+++.++...+.      .   -.=..+.|-.+|.+|++--|  
T Consensus       345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf------n---VsDckLhWQk~gdyLcvkvdR~  415 (698)
T KOG2314|consen  345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF------N---VSDCKLHWQKSGDYLCVKVDRH  415 (698)
T ss_pred             CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce------e---eeccEEEeccCCcEEEEEEEee
Confidence            34578889999999888864432     34566666664444333332      1   11224677889999986211  


Q ss_pred             ------C---cEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC----eeEEEeec
Q 006126          528 ------G---QIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL----ELRCQINL  590 (660)
Q Consensus       528 ------~---~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~----~~~~~~~~  590 (660)
                            |   .+.|+.++... ++....   -...|...+|-|.|+.+++-+.+   .++.+|.+++.    +++..+. 
T Consensus       416 tK~~~~g~f~n~eIfrireKdIpve~ve---lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-  491 (698)
T KOG2314|consen  416 TKSKVKGQFSNLEIFRIREKDIPVEVVE---LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-  491 (698)
T ss_pred             ccccccceEeeEEEEEeeccCCCceeee---cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-
Confidence                  1   24555554332 233332   26788999999999877654432   57889988742    2222222 


Q ss_pred             ccccCCCCcCcccceEEEEEecCCCCEEEEEe---CCCeEEEEeCCC
Q 006126          591 TAYAQPGTISLELYPLVIAAHPLEPNRIALGL---TNGRVHVIEPLE  634 (660)
Q Consensus       591 ~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s---~Dg~v~iw~~~~  634 (660)
                                 ...++.+.|+| .|.+++.+.   ..|.+.++|...
T Consensus       492 -----------k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  492 -----------KKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             -----------ccccceEEEcC-CCcEEEEEEecccccceEEEecch
Confidence                       13355899999 799887654   578999999884

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=4.8e-08  Score=102.44  Aligned_cols=304  Identities=11%  Similarity=0.094  Sum_probs=193.2

Q ss_pred             cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126          305 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       305 l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      +++.-|.+.-.++.|+|.|- +|.|+. ..|.+-|                     ..+-+.++..-  .|+..|+.+.|
T Consensus         9 lpG~l~~sN~~A~Dw~~~GL-iAygsh-slV~VVD---------------------s~s~q~iqsie--~h~s~V~~VrW   63 (1062)
T KOG1912|consen    9 LPGPLSRSNRNAADWSPSGL-IAYGSH-SLVSVVD---------------------SRSLQLIQSIE--LHQSAVTSVRW   63 (1062)
T ss_pred             CCCCCCcccccccccCccce-EEEecC-ceEEEEe---------------------hhhhhhhhccc--cCccceeEEEe
Confidence            55544666688899999884 555554 3444443                     33333333222  58889999999


Q ss_pred             e--------C------CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC---C--eEEEEeCCCeEEEEeCC
Q 006126          385 R--------G------SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D--LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       385 s--------~------~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~---~--~l~s~~~d~~I~iwd~~  444 (660)
                      .        +      -.||++. .|.|.+||...+..+..+..+..++..++|-+.   .  .+++-....++.+|+..
T Consensus        64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd  143 (1062)
T KOG1912|consen   64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD  143 (1062)
T ss_pred             ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence            7        1      1355555 699999999999988899999999999998763   2  67777888899999999


Q ss_pred             CCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCee--eeceeeeeeeeccCCC-------------CC
Q 006126          445 TKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPE-------------TT  508 (660)
Q Consensus       445 ~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~-------------~~  508 (660)
                      +|+...+.........|+.+.| |.+.+..-+..|.+.+-+.-....  ...+.++ +...|...             +.
T Consensus       144 tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts  222 (1062)
T KOG1912|consen  144 TGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTS  222 (1062)
T ss_pred             CCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccC
Confidence            9998888776667778899998 667777777777776665432110  1112222 22222100             00


Q ss_pred             C---------eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC--CEEEEEecCCeEEE
Q 006126          509 I---------VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG--KCIYVSCKSGHVKV  576 (660)
Q Consensus       509 ~---------v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~sg~~dg~I~i  576 (660)
                      .         ...++|+|.-+.++. .....+.++|++-..++.+....  .+.+.-+.+-|++  ..|+++-.||.+.|
T Consensus       223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~lti  300 (1062)
T KOG1912|consen  223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTI  300 (1062)
T ss_pred             CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEE
Confidence            0         112567887655554 68889999999888888777654  4444556666654  68999999999999


Q ss_pred             EECCCCeeEEEee-cccccCCCCc------CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          577 FDTSTLELRCQIN-LTAYAQPGTI------SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       577 wd~~~~~~~~~~~-~~~~~~~gh~------~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      |-.+......... .+-....|..      ...+.+....-.|.+...++.--.+|.+.+|.+.+|+
T Consensus       301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r  367 (1062)
T KOG1912|consen  301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR  367 (1062)
T ss_pred             EEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence            9766422111110 0000000100      1112222344456445566666678899999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.96  E-value=1.7e-07  Score=86.64  Aligned_cols=232  Identities=8%  Similarity=-0.034  Sum_probs=148.0

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE---EEEeCCEEEEEe-CCcEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC---FALRGSHLFSAS-GGKISI  399 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---v~~s~~~l~s~~-dg~I~i  399 (660)
                      .+||.||..|...+|...+.+...         ++.|.             |...|.-   .+-...-+..++ |.++++
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~---------~~cd~-------------snn~v~~~~r~cd~~~~~~i~sndht~k~  142 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHL---------YQCDV-------------SNNDVTLVKRYCDLKFPLNIASNDHTGKT  142 (344)
T ss_pred             cEEEeccccceeeeecccCcccce---------eeecc-------------cccchhhhhhhcccccceeeccCCcceeE
Confidence            478999999999999877654311         12221             2222211   111222233444 888888


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-c-eee-EeeccCCCeEEEEEeCCCCEEEEEe
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-K-TKA-KLKGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~-~~~-~~~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      +++.-+..........-.+.++++++|+ +.++.++...|..|.+... + .+. ........-.+..|+.....+|+++
T Consensus       143 ~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~  222 (344)
T KOG4532|consen  143 MVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF  222 (344)
T ss_pred             EEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence            8776543332222222337899999999 9999999999999987643 2 223 2233445556788999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE--EEEE-ecCcEEEEeCCCCceeeeecCCCC---
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH--LLSI-HEGQIDVYEAPTLNHTSQLVPDKM---  549 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~-~d~~i~iwd~~~~~~~~~~~~~~~---  549 (660)
                      .||++.|||++.-.......-. ....|.   +.+..+.|++.|..  |..+ .-+.+.+.|+++++..+.+...+.   
T Consensus       223 Qdg~~~I~DVR~~~tpm~~~ss-trp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~  298 (344)
T KOG4532|consen  223 QDGTCAIYDVRNMATPMAEISS-TRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER  298 (344)
T ss_pred             cCCcEEEEEecccccchhhhcc-cCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence            9999999999874322111112 223355   79999999986643  3335 557899999999987776654321   


Q ss_pred             ---CCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          550 ---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       550 ---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                         ...|...+|+.++.-+.+.+++ .+.=|++.+.
T Consensus       299 ~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  299 KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             cccccccccccccCCCcccccccch-hhheeecccc
Confidence               2447788888777766665544 2445655543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.96  E-value=5.5e-07  Score=95.07  Aligned_cols=285  Identities=9%  Similarity=0.004  Sum_probs=169.6

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe-EEEEEeCCEEEEEe-CCcEEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISIF  400 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~v~~s~~~l~s~~-dg~I~iw  400 (660)
                      +..+++++.+|.+.-+|.++++.            +|......... .....+...+ ..+...++.++.++ +|.+..+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~al  135 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDG-WFSKNKSALLSGGVTVAGGKVYIGSEKGQVYAL  135 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCccc-ccccccccccccccEEECCEEEEEcCCCEEEEE
Confidence            55677788888888888877764            66643322100 0000000111 12333466666666 8999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-----EEEEEeCCCCEEEEEe
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSSG  475 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~s~s  475 (660)
                      |.++|+.+...........+.... ++.++.++.++.+..+|..+|+.+..+......+     .+...  .+..++.++
T Consensus       136 d~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~  212 (394)
T PRK11138        136 NAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGG  212 (394)
T ss_pred             ECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEc
Confidence            999999888776433211111121 3467778889999999999999887665321110     11111  133567778


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec---CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCC
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP  552 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  552 (660)
                      .+|.+..+|..+|+......+......+..  .....+..+|   ++..++++.++.+..+|..+|+.+-.....    .
T Consensus       213 ~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~--~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~  286 (394)
T PRK11138        213 DNGRVSAVLMEQGQLIWQQRISQPTGATEI--DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG----S  286 (394)
T ss_pred             CCCEEEEEEccCChhhheeccccCCCccch--hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----C
Confidence            899999999998765433222100000000  0011111122   444444468899999999999876554321    1


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      ...+.  .++..++.++.+|.++.+|..+|+.+......     +  .....  +...   .+.++..++.||.|++.|.
T Consensus       287 ~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~--~~~~~--sp~v---~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        287 VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----L--HRLLT--APVL---YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-----C--CCccc--CCEE---ECCEEEEEeCCCEEEEEEC
Confidence            11222  34678888889999999999999877654321     0  01011  1222   2457788899999999999


Q ss_pred             CCCceeccCCC
Q 006126          633 LESEVEWGKLP  643 (660)
Q Consensus       633 ~~~~~~w~~~~  643 (660)
                      .+|+..|....
T Consensus       353 ~tG~~~~~~~~  363 (394)
T PRK11138        353 EDGRFVAQQKV  363 (394)
T ss_pred             CCCCEEEEEEc
Confidence            99999887644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.95  E-value=7.9e-09  Score=107.51  Aligned_cols=280  Identities=11%  Similarity=0.078  Sum_probs=183.4

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC--CEEEEEECCCcEEEEeccCC
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg--~~l~s~s~dg~i~vw~~~~~  343 (660)
                      .++..+|.|+-+|.++.-|- .+-|+.....+......     ...-.|-.+.|+|..  .+-+.........+|++...
T Consensus        28 ~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h-----~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   28 NAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHH-----ITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cceeeccccchhhhhhhcCe-EEEeccCCCCCceeeec-----cCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            34588999999999998774 45566653333333321     124567788888754  34444444444556876543


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe-EEEEEcCCCCCe
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIA  418 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~-~~~~~~~~~~~v  418 (660)
                      ..                   ..+...+. ||...|+.+.|.   ...+++++ |-.+..||+.+.. ++..+..-..+.
T Consensus       102 s~-------------------~aIef~lh-ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a  161 (1081)
T KOG0309|consen  102 SS-------------------NAIEFVLH-GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA  161 (1081)
T ss_pred             Cc-------------------cceEEEEe-cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence            21                   11111122 799999999999   66899999 9999999998743 455555555667


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  495 (660)
                      ..+.|+-.+ .+.+.+..+.|.+||.+.| .++..+++|...|+.+.|.. -...+.+.+.||+|+.||...........
T Consensus       162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~  241 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT  241 (1081)
T ss_pred             ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence            789999877 6677777889999999876 56788899999999999865 33468889999999999997743222222


Q ss_pred             eeeeeeccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEE---------EeCCC-CceeeeecCCCCCCCeEEEEEccCC
Q 006126          496 LHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDV---------YEAPT-LNHTSQLVPDKMDLPITYATYSCDG  562 (660)
Q Consensus       496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~i---------wd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg  562 (660)
                      +.   ..     .+|..-.+.|-|.-.+.  . .+..+.+         |+..+ .+++.++.+  |...|....|-..+
T Consensus       242 vt---t~-----~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~  311 (1081)
T KOG0309|consen  242 VT---TN-----FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRK  311 (1081)
T ss_pred             cc---cc-----CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcc
Confidence            11   11     35556666664443332  1 2223333         33332 356777765  56666655554221


Q ss_pred             ----------CEEEEEecCCeEEEEECCC
Q 006126          563 ----------KCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       563 ----------~~l~sg~~dg~I~iwd~~~  581 (660)
                                -.|++=+.|..+++|-+.+
T Consensus       312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccCCCCccceeEEEeecCCceEeeeccH
Confidence                      2689999999999998764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.93  E-value=2.6e-08  Score=93.65  Aligned_cols=258  Identities=13%  Similarity=0.148  Sum_probs=162.8

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce-eeeeeccceeEEEecCCCCc--eeeecccCCCCCCeEEEEEe-
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s-  385 (660)
                      ..+.|+++.|...|.||++|...|.|.+|.-..... ...      -..-++....+  .++..   .-...|..+.|. 
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk------f~teFQshe~EFDYLkSl---eieEKin~I~w~~   95 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK------FFTEFQSHELEFDYLKSL---EIEEKINAIEWFD   95 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchh------hhhhhcccccchhhhhhc---cHHHHhhheeeec
Confidence            467899999999999999999999999987654431 000      00000000000  00000   123457778887 


Q ss_pred             ----CCEEEEEeCCcEEEEECCCCe-------------------E-----------------------EEEE-cCCCCCe
Q 006126          386 ----GSHLFSASGGKISIFSLETFQ-------------------T-----------------------LATF-ANPPPIA  418 (660)
Q Consensus       386 ----~~~l~s~~dg~I~iwd~~~~~-------------------~-----------------------~~~~-~~~~~~v  418 (660)
                          ..+|+++.|.+|++|.+....                   +                       .+.. ..|...+
T Consensus        96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi  175 (460)
T COG5170          96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI  175 (460)
T ss_pred             CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence                446777779999999874320                   0                       0111 2466677


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCce---eeEeeccC-----CCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQ-----NRITCLAYSLS-LNVLVSSGADAQLCVWDAVGW  488 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~---~~~~~~~~-----~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~  488 (660)
                      .++.++.|. .++++ .|-.|-+|++.--..   +..++.|.     .-|++..|+|. ...+...+..|.|++-|++..
T Consensus       176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            889998888 55554 577899998764321   22233332     45788899994 456777788999999999853


Q ss_pred             eee-e-ceee--e------eeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC-ceeeeecCCC---------
Q 006126          489 KKL-C-SKFL--H------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-NHTSQLVPDK---------  548 (660)
Q Consensus       489 ~~~-~-~~~~--~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~---------  548 (660)
                      ..- . ....  .      ..+.+-.   +.|..+.|+++|+++++-.--+|++||++.. .++.++..+.         
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eiv---sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~  331 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIV---SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV  331 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHh---hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhh
Confidence            210 0 0000  0      0111112   5688899999999999877789999999754 4666654321         


Q ss_pred             -CCCCe---EEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          549 -MDLPI---TYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       549 -~~~~v---~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                       ....|   ..+.||.|.+.+++|+..+..-||-+.
T Consensus       332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             hhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence             12233   358889999999999988777777643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.93  E-value=1.3e-06  Score=100.22  Aligned_cols=236  Identities=13%  Similarity=0.171  Sum_probs=153.2

Q ss_pred             CCCCeEEEEEe--CCEEEEEe-CCcEEEE----ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC
Q 006126          375 PKDSISCFALR--GSHLFSAS-GGKISIF----SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK  446 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~-dg~I~iw----d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~  446 (660)
                      ..+.|.++.+-  ...++.+. +|.|.+.    +..+.. +.....-..+|.+++||||+ .++..+.++++.+.+-. .
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F  151 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence            44667788777  45555555 8888888    444322 22222346789999999999 88888888888776422 1


Q ss_pred             ce------------------------eeEeec------------------------cCCCeEEEEEeCCCCEEEEEeC--
Q 006126          447 KT------------------------KAKLKG------------------------HQNRITCLAYSLSLNVLVSSGA--  476 (660)
Q Consensus       447 ~~------------------------~~~~~~------------------------~~~~v~~l~~sp~~~~l~s~s~--  476 (660)
                      .+                        -..|.|                        +...-..++|-.||.++++.+.  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence            11                        111111                        1223457889999999998775  


Q ss_pred             -C---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe----cCcEEEEeCCCCceeeeecCC-
Q 006126          477 -D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----EGQIDVYEAPTLNHTSQLVPD-  547 (660)
Q Consensus       477 -d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----d~~i~iwd~~~~~~~~~~~~~-  547 (660)
                       .   +.++||+-+ |....      ..+.-.   +--.+++|.|.|++|++..    ...|.+|.- +|-....|... 
T Consensus       232 ~~~~~R~iRVy~Re-G~L~s------tSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~  300 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQS------TSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF  300 (928)
T ss_pred             CCCceeEEEEECCC-ceEEe------ccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence             2   479999976 33211      111111   3445799999999999852    245777774 45444444332 


Q ss_pred             -CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe--eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          548 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       548 -~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                       .....|..+.|++|+..||....|. |.+|-..+..  +.+.+...     .  ...+.  .+.|+|.+...|...+.+
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-----~--~~~~~--~~~Wdpe~p~~L~v~t~~  370 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-----S--SESVN--FVKWDPEKPLRLHVLTSN  370 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-----C--CCCCC--ceEECCCCCCEEEEEecC
Confidence             2367899999999999999987665 9999998864  23333321     0  12222  599999888888888887


Q ss_pred             CeEEEEeCC
Q 006126          625 GRVHVIEPL  633 (660)
Q Consensus       625 g~v~iw~~~  633 (660)
                      |.+..++..
T Consensus       371 g~~~~~~~~  379 (928)
T PF04762_consen  371 GQYEIYDFA  379 (928)
T ss_pred             CcEEEEEEE
Confidence            877665543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=2.5e-06  Score=89.89  Aligned_cols=167  Identities=8%  Similarity=-0.051  Sum_probs=102.5

Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCC--CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE
Q 006126          398 SIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  473 (660)
Q Consensus       398 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d--~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  473 (660)
                      .++|+.+++...... .........|+||| .++ +.+.+  ..|+++|+.+++. ..+..+........|+|||+.|+.
T Consensus       216 yv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F  293 (419)
T PRK04043        216 YKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVF  293 (419)
T ss_pred             EEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEE
Confidence            344554444333222 33444567899999 444 44333  4788899887764 344444433445679999998887


Q ss_pred             EeCC-C--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec---------CcEEEEeCCCCce
Q 006126          474 SGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNH  540 (660)
Q Consensus       474 ~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---------~~i~iwd~~~~~~  540 (660)
                      .+.. +  .|.++|+.+++..   .+.  ..+     .  ....|+|||++++. +..         ..|.+.|+.++..
T Consensus       294 ~Sdr~g~~~Iy~~dl~~g~~~---rlt--~~g-----~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        294 VSDRLGYPNIFMKKLNSGSVE---QVV--FHG-----K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             EECCCCCceEEEEECCCCCeE---eCc--cCC-----C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence            7643 2  6888888875431   111  111     1  12489999999987 422         3688899987765


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL  582 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~  582 (660)
                       ..+...   .......|+|||+.|+....+   ..+.+.++...
T Consensus       362 -~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        362 -RRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             -EECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence             344332   223358899999988866543   24667777543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.87  E-value=1.4e-05  Score=78.40  Aligned_cols=213  Identities=19%  Similarity=0.132  Sum_probs=133.4

Q ss_pred             EEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-CCCeEEEEeCCCeEEEEeCCCCceeeEeec-
Q 006126          381 CFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILL-PQDLFAFGFDDSSILVHCPCTKKTKAKLKG-  454 (660)
Q Consensus       381 ~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s-p~~~l~s~~~d~~I~iwd~~~~~~~~~~~~-  454 (660)
                      ++.|.  ...|....  .+.|..|+..+++... +....  ...+++. +++.++.+..++ +.++|+.+++....... 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            34555  33444444  6889999998876543 22222  5677777 666555555544 45559988865443332 


Q ss_pred             ----cCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          455 ----HQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       455 ----~~~~v~~l~~sp~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                          .....+.+++.|+|++.++....        |.|..++.. ++..   .   ...+-    ...+.++|+|+++.|
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~---~---~~~~~----~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT---V---VADGL----GFPNGIAFSPDGKTL  148 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE---E---EEEEE----SSEEEEEEETTSSEE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE---E---EecCc----ccccceEECCcchhe
Confidence                34567899999999977776543        457777776 3311   1   11111    357899999999988


Q ss_pred             EEE--ecCcEEEEeCCCCce----eeee-cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126          523 LSI--HEGQIDVYEAPTLNH----TSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ  595 (660)
Q Consensus       523 ~~~--~d~~i~iwd~~~~~~----~~~~-~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~  595 (660)
                      +++  ..+.|..+++.....    ...+ ......+..-.++++.+|++.++....+.|.+++.+ |+++..+...    
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p----  223 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP----  223 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence            763  667899999853221    1222 111112347789999999988888888999999988 8888887743    


Q ss_pred             CCCcCcccceEEEEEe-cCCCCEEEE
Q 006126          596 PGTISLELYPLVIAAH-PLEPNRIAL  620 (660)
Q Consensus       596 ~gh~~~~v~~~~v~~s-p~d~~~l~s  620 (660)
                          ..  .+++++|. | +.+.|..
T Consensus       224 ----~~--~~t~~~fgg~-~~~~L~v  242 (246)
T PF08450_consen  224 ----VP--RPTNCAFGGP-DGKTLYV  242 (246)
T ss_dssp             ----SS--SEEEEEEEST-TSSEEEE
T ss_pred             ----CC--CEEEEEEECC-CCCEEEE
Confidence                11  35589995 5 5454443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.84  E-value=9.6e-06  Score=79.64  Aligned_cols=219  Identities=13%  Similarity=0.090  Sum_probs=141.5

Q ss_pred             EEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE
Q 006126          316 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA  392 (660)
Q Consensus       316 ~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~  392 (660)
                      +++|.+ +|.++++--..+.|..|+..++..           .++.              ... ...+++.  +..|+.+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----------~~~~--------------~~~-~~G~~~~~~~g~l~v~   57 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----------EVID--------------LPG-PNGMAFDRPDGRLYVA   57 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------EEEE--------------SSS-EEEEEEECTTSEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----------EEEe--------------cCC-CceEEEEccCCEEEEE
Confidence            567888 555555544577887777665543           1111              111 5556665  6677777


Q ss_pred             eCCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcCCC-eEEEEeCC--------CeEEEEeCCCCceeeEeeccCCC
Q 006126          393 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR  458 (660)
Q Consensus       393 ~dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~~sp~~-~l~s~~~d--------~~I~iwd~~~~~~~~~~~~~~~~  458 (660)
                      ..+.+.++|..+++.......     .....+.+++.|+| ..++....        |.|..++.. ++...... .-..
T Consensus        58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~  135 (246)
T PF08450_consen   58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF  135 (246)
T ss_dssp             ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred             EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence            766667779998866544432     34567899999999 66655543        568888877 55443333 3456


Q ss_pred             eEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCee-e-eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 006126          459 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKK-L-CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  534 (660)
Q Consensus       459 v~~l~~sp~~~~l~-s~s~dg~i~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd  534 (660)
                      .+.++|+|+++.|+ +-+..+.|..+++..... . ....+. -.....   +..-.+++..+|++.++. ..+.|.++|
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI-DFPGGP---GYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE-E-SSSS---CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEE-EcCCCC---cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            78999999998776 556678899999864221 1 111121 011111   246789999999887774 788999999


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEe
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC  569 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~  569 (660)
                      .. |+.+..+...  ...+++++|. ++.+.|+..+
T Consensus       212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred             CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence            86 9988888764  4589999995 7767666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.84  E-value=2.7e-06  Score=83.15  Aligned_cols=196  Identities=18%  Similarity=0.129  Sum_probs=122.9

Q ss_pred             eCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe-eccC---CCe
Q 006126          385 RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-KGHQ---NRI  459 (660)
Q Consensus       385 s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~---~~v  459 (660)
                      .++.+++++ ++.+..||..+|+.+..+..... +.......++.+++++.++.++.+|..+|+.+... ....   ...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            377777776 99999999999999888775222 21112223336677778889999999999998774 3221   112


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCC--CCCCeEEEEEecCCcEEEEEecCcEEEEeCCC
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  537 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~  537 (660)
                      .......++..++++..++.|..+|.++|+.+...... ...+..+  ....+..-....++..++++.++.+.-+|+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~t  192 (238)
T PF13360_consen  114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLAT  192 (238)
T ss_dssp             --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTT
T ss_pred             cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCC
Confidence            22233334788888998999999999998865544433 1111000  00112222233345444445677544449999


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ  587 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~  587 (660)
                      ++.+-...    ...+.. ....++..|+.++.++.|..||+.+|+.+..
T Consensus       193 g~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  193 GEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TEEEEEEC----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEec----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            98654322    122222 2457788888888999999999999997754

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.83  E-value=6.7e-06  Score=80.14  Aligned_cols=216  Identities=18%  Similarity=0.109  Sum_probs=145.1

Q ss_pred             CEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCC-eEEEEeC-----CCeEEEEeCC-CCceeeEeecc
Q 006126          387 SHLFSAS--GGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFD-----DSSILVHCPC-TKKTKAKLKGH  455 (660)
Q Consensus       387 ~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v--~~v~~sp~~-~l~s~~~-----d~~I~iwd~~-~~~~~~~~~~~  455 (660)
                      ..++.+-  .....+||..+++....+......-  -...|++|| +|++.-.     .|.|-|||.. +.+.+..+..|
T Consensus        18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~   97 (305)
T PF07433_consen   18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH   97 (305)
T ss_pred             eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC
Confidence            3444444  3457789999998888776544433  246899999 7776543     4689999998 66778888888


Q ss_pred             CCCeEEEEEeCCCCEEEEEe------------------CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126          456 QNRITCLAYSLSLNVLVSSG------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                      .-.-..+.+.|||+.|+++.                  .+..+...|..+|+.+....+.  ...|.   ..|..+++.+
T Consensus        98 GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~---lSiRHLa~~~  172 (305)
T PF07433_consen   98 GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQ---LSIRHLAVDG  172 (305)
T ss_pred             CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccccc---cceeeEEecC
Confidence            87788899999998877652                  2335666777887765443332  12344   5799999999


Q ss_pred             CCcEEEEE-ecC-------cEEEEeCCCCceeeeecCC-----CCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCe
Q 006126          518 DQIHLLSI-HEG-------QIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE  583 (660)
Q Consensus       518 ~~~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~  583 (660)
                      +|..++.. ..+       -|.+++.  ++.+..+...     .-...+-+++++++|.++++.+ ..|.+.+||..+++
T Consensus       173 ~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  173 DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence            99877764 222       2455543  2322222221     1257899999999999886655 46889999999999


Q ss_pred             eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          584 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                      .+......          .  +..++-.+ ++ +++|.+.
T Consensus       251 ~~~~~~l~----------D--~cGva~~~-~~-f~~ssG~  276 (305)
T PF07433_consen  251 LLGSVPLP----------D--ACGVAPTD-DG-FLVSSGQ  276 (305)
T ss_pred             EeeccccC----------c--eeeeeecC-Cc-eEEeCCC
Confidence            88876542          1  22566555 44 6666553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=4.6e-08  Score=95.62  Aligned_cols=160  Identities=14%  Similarity=0.045  Sum_probs=108.9

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE----ecCcEEEEe
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYE  534 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~d~~i~iwd  534 (660)
                      ...+..++.+++++++..+....+++++.... ..+.+. .....    ..-+++.|..+...+.+.    ....+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~-~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLD-VSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeee-Eeecc----cCcceeeeeeccceEEEEeecCCceeeeeec
Confidence            34455678888888888888877887766332 111222 11111    233455565555554442    335667777


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      ...+.+...+   +|-..++.++|+||+++|+++..|..|+|-.......+..+-.      || ..-|.  .++.-+  
T Consensus       139 ~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------GH-~eFVS--~isl~~--  204 (390)
T KOG3914|consen  139 ADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------GH-KEFVS--TISLTD--  204 (390)
T ss_pred             ccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------cc-Hhhee--eeeecc--
Confidence            6555544333   4789999999999999999999999999988877666665543      66 44444  566555  


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcee
Q 006126          615 PNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                      +..|+++|.|++|++||+.+|+..
T Consensus       205 ~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  205 NYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             CceeeecCCCCcEEEEecccCCcc
Confidence            567999999999999999999764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.4e-07  Score=93.18  Aligned_cols=296  Identities=15%  Similarity=0.203  Sum_probs=188.6

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.+.|+.+..+. .+++.+++.||.++.|.-.....                  -+.+....  .|...+.+++.+  +-
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG------------------vEfVKhFr--aHL~~I~sl~~S~dg~   66 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG------------------VEFVKHFR--AHLGVILSLAVSYDGW   66 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc------------------eeehhhhH--HHHHHHHhhhccccce
Confidence            788888876654 57899999999999996443110                  11221111  477778888888  55


Q ss_pred             EEEEEe--CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC---eEEEE-eCCCeEEEEeCCCCc-eeeEe-eccCC
Q 006126          388 HLFSAS--GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD---LFAFG-FDDSSILVHCPCTKK-TKAKL-KGHQN  457 (660)
Q Consensus       388 ~l~s~~--dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~---~l~s~-~~d~~I~iwd~~~~~-~~~~~-~~~~~  457 (660)
                      .+.+.+  |..++++|+.+...+..++  -.+..+ +...++..   .++++ -.++.|.++|-...- ...-+ .-|..
T Consensus        67 L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s  145 (558)
T KOG0882|consen   67 LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS  145 (558)
T ss_pred             eEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence            566655  7899999998766553333  222323 23334443   44433 357789999976543 22233 34999


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-Ceeeec-----eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 006126          458 RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCS-----KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI  530 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i  530 (660)
                      +|.++.+++.+..+++....|.|.-|.... .+....     ....+..-+-....+...++.|+|+|..+.+ +.|..|
T Consensus       146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV  225 (558)
T KOG0882|consen  146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV  225 (558)
T ss_pred             ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence            999999999999999999999999998873 100000     0000000010001146789999999999999 799999


Q ss_pred             EEEeCCCCceeeeecCCC------------------------------C-CCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          531 DVYEAPTLNHTSQLVPDK------------------------------M-DLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~~------------------------------~-~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      +++++++|+.++.+....                              | ...-+.++|...|++|+.|+-=| |++.++
T Consensus       226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~  304 (558)
T KOG0882|consen  226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINL  304 (558)
T ss_pred             EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEe
Confidence            999999988766543210                              1 22345688999999999987766 899999


Q ss_pred             CCCeeEEEeeccc---c--------cCCCCcC-----cccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          580 STLELRCQINLTA---Y--------AQPGTIS-----LELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       580 ~~~~~~~~~~~~~---~--------~~~gh~~-----~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                      .++++...+-...   +        ...++..     ...+. .+.+-+ |+.+++++-.-..++++
T Consensus       305 ~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  305 DTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             ecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence            9998876654210   0        0111100     00000 233556 77788888788888888

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=3.8e-08  Score=92.58  Aligned_cols=252  Identities=15%  Similarity=0.196  Sum_probs=158.3

Q ss_pred             CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEcCCC---eEEE
Q 006126          375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF  431 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~sp~~---~l~s  431 (660)
                      ....|+++.|.  |.||++|. .|.|.+|.-....     ....|++|.            ..|..+.|..++   .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            44568999999  89999999 8999999765422     233455554            346778887665   7888


Q ss_pred             EeCCCeEEEEeCCCCc------------------------------------------eeeEe-eccCCCeEEEEEeCCC
Q 006126          432 GFDDSSILVHCPCTKK------------------------------------------TKAKL-KGHQNRITCLAYSLSL  468 (660)
Q Consensus       432 ~~~d~~I~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~l~~sp~~  468 (660)
                      .+.|++|++|.+....                                          +.+.+ ..|.-.|+++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8999999999875320                                          00111 3466778899999888


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC--CCCCCeEEEEEecCCcEEE--EEecCcEEEEeCCCCce----
Q 006126          469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLL--SIHEGQIDVYEAPTLNH----  540 (660)
Q Consensus       469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~--~~~d~~i~iwd~~~~~~----  540 (660)
                      ..++++ .|-.|.+|++.-...  ...+-.+ ..|.  ....-|++..|+|....+.  ++..|.|++-|++....    
T Consensus       185 et~lSa-DdLrINLWnl~i~D~--sFnIVDi-KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDG--SFNIVDI-KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             heeeec-cceeeeeccccccCC--ceEEEec-cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            888764 578899998865221  1111101 1110  0003578889999654443  35889999999983221    


Q ss_pred             --eee--ecCCCC------CCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCCC----CcCcccc-
Q 006126          541 --TSQ--LVPDKM------DLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPG----TISLELY-  604 (660)
Q Consensus       541 --~~~--~~~~~~------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~g----h~~~~v~-  604 (660)
                        +..  +.+..+      ...|..+.|+++|+++++-.. -+|+|||++. ..++.+++.+......    .+...++ 
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence              111  111111      456888999999999988643 6799999985 3456666543211000    0111122 


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      -..+.|+. |...+.+|+.....-|+-.
T Consensus       340 kFeisfSg-d~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         340 KFEISFSG-DDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             eEEEEecC-Ccccccccccccceeeecc
Confidence            23678887 6677788877766666653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.79  E-value=4.2e-06  Score=79.03  Aligned_cols=218  Identities=12%  Similarity=0.113  Sum_probs=129.8

Q ss_pred             EEEcCCCeEEEEeCCCeEEEEeCCCC--ceeeEee---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126          421 FILLPQDLFAFGFDDSSILVHCPCTK--KTKAKLK---GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       421 v~~sp~~~l~s~~~d~~I~iwd~~~~--~~~~~~~---~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  495 (660)
                      ++.+++|.+++.-.|..|.|-..+..  ..+.+..   ...-.=..++|+||+..|+.+...|+|++||+...+...-.+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p   82 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP   82 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence            45567774445556777766654432  1222222   122234678999999999999999999999998633221111


Q ss_pred             eeeeeeccCCCCCCeEEEEEecCC-------cEEEEEecCcEEEEeCCC-----CceeeeecCCC-CCCCeEEEEEccCC
Q 006126          496 LHSFQTGLVPETTIVNHIQFHPDQ-------IHLLSIHEGQIDVYEAPT-----LNHTSQLVPDK-MDLPITYATYSCDG  562 (660)
Q Consensus       496 ~~~~~~~~~~~~~~v~~~~~sp~~-------~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-~~~~v~~~~~s~dg  562 (660)
                      .. ...+.  ....|..+.|.+..       ..|+...+|.++=|-+..     .+...++.... ....|.++.++|..
T Consensus        83 ~~-~~~~d--~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   83 AM-SFPGD--LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cc-ccCCc--cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            11 01111  11467777776532       345557787777666432     23333433322 37789999999999


Q ss_pred             CEEEEEecC-C----------eEEEEECCCCeeEEEee------------------cc---cccCCCCcCcccceEEEEE
Q 006126          563 KCIYVSCKS-G----------HVKVFDTSTLELRCQIN------------------LT---AYAQPGTISLELYPLVIAA  610 (660)
Q Consensus       563 ~~l~sg~~d-g----------~I~iwd~~~~~~~~~~~------------------~~---~~~~~gh~~~~v~~~~v~~  610 (660)
                      ++|++||.. .          -+.-|.+-++.+-....                  ..   .+...+.....++  .|..
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSl  237 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSL  237 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEE
Confidence            988877642 1          25566654332211110                  00   0111122234444  8999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEeCCCCce--eccCCCC
Q 006126          611 HPLEPNRIALGLTNGRVHVIEPLESEV--EWGKLPF  644 (660)
Q Consensus       611 sp~d~~~l~s~s~Dg~v~iw~~~~~~~--~w~~~~~  644 (660)
                      || ||..||+...+|.|.+|++.+-..  +|.....
T Consensus       238 SP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  238 SP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             CC-CCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            99 899999999999999999988654  7765443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.78  E-value=8.6e-06  Score=79.39  Aligned_cols=230  Identities=13%  Similarity=0.105  Sum_probs=145.2

Q ss_pred             CeEEEEEec-CCCEEEEEECCCc-EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          313 RVVRLIYSH-SGDFLVALTQTAT-HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       313 ~V~~~~~sp-dg~~l~s~s~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ....++.+| .+..++.+-..|+ ..+||..++....         .++- ..+.-..     ||      -.|+  |++
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---------~~~a-~~gRHFy-----GH------g~fs~dG~~   64 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---------RLWA-PPGRHFY-----GH------GVFSPDGRL   64 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---------EEcC-CCCCEEe-----cC------EEEcCCCCE
Confidence            344577888 4455556666654 4455555444311         1111 1111110     33      4677  888


Q ss_pred             EEEEe-C-----CcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe------------------CCCeEEEEe
Q 006126          389 LFSAS-G-----GKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------DDSSILVHC  442 (660)
Q Consensus       389 l~s~~-d-----g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~------------------~d~~I~iwd  442 (660)
                      |++.- |     |.|-|||.. +.+.+.++..+.-.-..+.+.||| .|+++.                  .+.++...|
T Consensus        65 LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld  144 (305)
T PF07433_consen   65 LYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD  144 (305)
T ss_pred             EEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEe
Confidence            88875 3     789999998 677888888777666788899999 666542                  223677788


Q ss_pred             CCCCceeeEee----ccCCCeEEEEEeCCCCEEEEEeCCCc-------EEEEEcCCCeeeeceeeee-eeeccCCCCCCe
Q 006126          443 PCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQ-------LCVWDAVGWKKLCSKFLHS-FQTGLVPETTIV  510 (660)
Q Consensus       443 ~~~~~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~dg~-------i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~v  510 (660)
                      ..+|+.+.+..    -|...|..+++.++|..++..-..|.       +-+++....  ........ ....-.   +.+
T Consensus       145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~---~Y~  219 (305)
T PF07433_consen  145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLN---GYI  219 (305)
T ss_pred             cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhC---Cce
Confidence            88998887743    37788999999999977766544332       334433321  10000000 000111   468


Q ss_pred             EEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          511 NHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       511 ~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                      -+|++++++..+++ + ..+.+.+||..+++.+....    -..+..++-.+++ ++++.+. |.+
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~-G~~  279 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ-GQL  279 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC-ccE
Confidence            89999999998887 5 78899999999999887764    3456677776666 6666544 443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=2.4e-08  Score=95.40  Aligned_cols=164  Identities=12%  Similarity=0.060  Sum_probs=120.7

Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126          421 FILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       421 v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  498 (660)
                      ++|+-+-  .-++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...+..+..|+..|.|..+|++.+..-...+.+.
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            3666432  226667788889999988743 3343 56789999999889999999999999999999853333334442


Q ss_pred             eeeccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCce---eeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126          499 FQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH  573 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~  573 (660)
                      +  -|.   +.|+++..-. ++.+|++ +.+|+|++||.+.-++   ++++.++-....-.-+-+.+....+++++.|..
T Consensus       295 l--yh~---Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  295 L--YHD---SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             E--EcC---cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE
Confidence            2  243   6788887766 6777777 5999999999987666   888866422222223444577788999999999


Q ss_pred             EEEEECCCCeeEEEeecc
Q 006126          574 VKVFDTSTLELRCQINLT  591 (660)
Q Consensus       574 I~iwd~~~~~~~~~~~~~  591 (660)
                      .|||.++.|.++.+++.+
T Consensus       370 tRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             EEEEecccCceeeccCCC
Confidence            999999999999988743

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.72  E-value=2.5e-07  Score=90.59  Aligned_cols=149  Identities=15%  Similarity=0.159  Sum_probs=101.4

Q ss_pred             CCEEEEEe-CCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC-eE---EEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126          386 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LF---AFGFDDSSILVHCPCTKKTKAKLKGHQ  456 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~-~l---~s~~~d~~I~iwd~~~~~~~~~~~~~~  456 (660)
                      +.++|.+. +....+++.....    +..... -...-+++.+..+. .+   -..++...+.+|....+.+ ...-||-
T Consensus        74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhv  151 (390)
T KOG3914|consen   74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHV  151 (390)
T ss_pred             ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhh
Confidence            55666666 5555555554322    222221 12222344444444 22   2334445666776665443 3445799


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA  535 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~  535 (660)
                      ..+..++|+||+++++++..|..|++-....     ...+....-||.   ..|..++.-++.. |++ |.|+++++||+
T Consensus       152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI  222 (390)
T ss_pred             hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence            9999999999999999999999999987766     455666777888   7899999998765 555 79999999999


Q ss_pred             CCCceeeeec
Q 006126          536 PTLNHTSQLV  545 (660)
Q Consensus       536 ~~~~~~~~~~  545 (660)
                      ++|+.+.++.
T Consensus       223 ~sgk~L~t~d  232 (390)
T KOG3914|consen  223 TSGKLLDTCD  232 (390)
T ss_pred             ccCCcccccc
Confidence            9999887663

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.71  E-value=1.2e-05  Score=76.11  Aligned_cols=203  Identities=16%  Similarity=0.098  Sum_probs=130.0

Q ss_pred             CCEEEEEeCCcEEEEECCCC--eEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-----
Q 006126          386 GSHLFSASGGKISIFSLETF--QTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----  454 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~--~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-----  454 (660)
                      |+.||...|..|.|=..++.  ..+.+.+   .....-+-++|+||+ .||.+...|+|++||+.. ..+..+..     
T Consensus         9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~   87 (282)
T PF15492_consen    9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFP   87 (282)
T ss_pred             CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccC
Confidence            67777777877777665441  2222222   222334689999999 999999999999999874 33433332     


Q ss_pred             --cCCCeEEEEEeCC------CCEEEEEeCCCcEEEEEcCCCeeeeceeeee-eeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126          455 --HQNRITCLAYSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-  524 (660)
Q Consensus       455 --~~~~v~~l~~sp~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~-  524 (660)
                        -...|..+.|.+.      ...|++...+|.++-|-+..+........++ -+..|-+  ..|.++.++|..+.|++ 
T Consensus        88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp--~Gi~~~vy~p~h~LLlVg  165 (282)
T PF15492_consen   88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP--HGINSAVYHPKHRLLLVG  165 (282)
T ss_pred             CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC--CceeEEEEcCCCCEEEEe
Confidence              2245666767442      2256777788888888764332111111111 1223323  68999999999888887 


Q ss_pred             E-ec-C---------cEEEEeCCCCceeee--------------------ec-------CCCCCCCeEEEEEccCCCEEE
Q 006126          525 I-HE-G---------QIDVYEAPTLNHTSQ--------------------LV-------PDKMDLPITYATYSCDGKCIY  566 (660)
Q Consensus       525 ~-~d-~---------~i~iwd~~~~~~~~~--------------------~~-------~~~~~~~v~~~~~s~dg~~l~  566 (660)
                      | .. .         .+.-|.+-++.+...                    +.       .......|..+..||||..||
T Consensus       166 G~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La  245 (282)
T PF15492_consen  166 GCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA  245 (282)
T ss_pred             ccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE
Confidence            3 11 1         366676543322111                    00       011256788999999999999


Q ss_pred             EEecCCeEEEEECCCCeeEEEeecc
Q 006126          567 VSCKSGHVKVFDTSTLELRCQINLT  591 (660)
Q Consensus       567 sg~~dg~I~iwd~~~~~~~~~~~~~  591 (660)
                      +...+|.|.+|++.+-++...+...
T Consensus       246 ~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  246 CIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EEEcCCeEEEEecCcchhhcccchh
Confidence            9999999999999998887777643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1.8e-06  Score=90.98  Aligned_cols=240  Identities=13%  Similarity=0.065  Sum_probs=170.7

Q ss_pred             CCeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC------------C-eEEEEeCCCeEEEEe
Q 006126          377 DSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ------------D-LFAFGFDDSSILVHC  442 (660)
Q Consensus       377 ~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~------------~-~l~s~~~d~~I~iwd  442 (660)
                      ..-.++.|+ +..||.|+...|.+-|..+.+.++.+..|...|+.+.|.|-            . .|+++...|.|.+||
T Consensus        16 sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   16 SNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            335677888 99999999999999999999999999999999999999763            1 578888899999999


Q ss_pred             CCCCceeeEeeccCCCeEEEEEeC---CC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-
Q 006126          443 PCTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-  517 (660)
Q Consensus       443 ~~~~~~~~~~~~~~~~v~~l~~sp---~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-  517 (660)
                      ...+..+..+..|..++..+.|-+   +. ..|++-....++.+|+..+|+...+..     .+|    ....++.+.| 
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-----ys~----~iLs~f~~DPf  166 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-----YSH----EILSCFRVDPF  166 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-----cCC----cceeeeeeCCC
Confidence            999988888888999999999966   33 467777778899999999987543322     233    2456688888 


Q ss_pred             CCcEEEE-EecCcEEEEeCCC-------CceeeeecCC--------------CCCC---------CeEEEEEccCCCEEE
Q 006126          518 DQIHLLS-IHEGQIDVYEAPT-------LNHTSQLVPD--------------KMDL---------PITYATYSCDGKCIY  566 (660)
Q Consensus       518 ~~~~l~~-~~d~~i~iwd~~~-------~~~~~~~~~~--------------~~~~---------~v~~~~~s~dg~~l~  566 (660)
                      |.+.+.. +..|.+.+.+.--       ++..+.-..+              .+..         ....++|+|.-+.++
T Consensus       167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            5555555 6667666665421       2222211110              0000         012356788777666


Q ss_pred             EEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC-CCCEEEEEeCCCeEEEEeCCCC
Q 006126          567 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       567 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~-d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ...-...+.|+|++-...+.+....        .+.+.  =+.|-|+ ....|.+.-.||.+.||.-...
T Consensus       247 fi~~prellv~dle~~~~l~vvpie--------r~~ak--fv~vlP~~~rd~LfclH~nG~ltirvrk~~  306 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIE--------RGGAK--FVDVLPDPRRDALFCLHSNGRLTIRVRKEE  306 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEec--------cCCcc--eeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence            6667888999999988877777643        22233  3455551 2346888889999999987653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=1.5e-08  Score=107.52  Aligned_cols=211  Identities=14%  Similarity=0.176  Sum_probs=148.7

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-eEEEEeCCC-C
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-K  446 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~-~I~iwd~~~-~  446 (660)
                      .|....+|++|+  .++|+.|+ .|.|++|++.+|.......+|..+|+-+.-+.||  .|.+++... -..+|++.+ +
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence            477889999999  67899999 9999999999999999999999999999999999  444444444 577899764 4


Q ss_pred             ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe
Q 006126          447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH  526 (660)
Q Consensus       447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  526 (660)
                      ...++|.+    -.++.|+.....-+.|+......+||+.++..     +.+.+.+-......-+...|+|+...++-  
T Consensus      1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~-----l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP-----LQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred             Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcH-----HHHhcCcchhhhhhccccccCCCcceEee--
Confidence            45555543    35678887655556666667888999999543     33222221100023367889999887764  


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                      ||  .+||++..+.++.|..   -..-..-.|+|.|..++..++     |||+++.+++...+.            ..-.
T Consensus      1248 dG--vLWDvR~~~aIh~FD~---ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~------------Ldqc 1305 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQ---FTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS------------LDQC 1305 (1516)
T ss_pred             Cc--eeeeeccHHHHhhhhh---heecccccccCCCceEEeech-----hhhhHHHHHHhcCcc------------ccce
Confidence            33  4899988777766632   112223468999999988765     899999887766542            1223


Q ss_pred             EEEEecCCCCEE
Q 006126          607 VIAAHPLEPNRI  618 (660)
Q Consensus       607 ~v~~sp~d~~~l  618 (660)
                      .|.|+. .|+.+
T Consensus      1306 ~VtFNs-tG~Vm 1316 (1516)
T KOG1832|consen 1306 AVTFNS-TGDVM 1316 (1516)
T ss_pred             EEEecc-Cccch
Confidence            567776 46544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.59  E-value=1.4e-05  Score=88.86  Aligned_cols=237  Identities=13%  Similarity=0.104  Sum_probs=137.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|..++..++.+..+|.|.+-|.++    ........    -.++|.+++||||++.++..+..+++.+-+.       
T Consensus        74 ~~fl~d~~~i~v~~~~G~iilvd~et----~~~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~-------  138 (1265)
T KOG1920|consen   74 VQFLADTNSICVITALGDIILVDPET----LELEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTK-------  138 (1265)
T ss_pred             EEEecccceEEEEecCCcEEEEcccc----cceeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEec-------
Confidence            48888999999999999999998763    22222111    3789999999999999999999888876431       


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcC
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFILLP  425 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp  425 (660)
                                .|++-..+.+....  ...+..-.+.|- ...=+-|+.|.....+...... ..... -.+.=+++.|..
T Consensus       139 ----------~f~~i~E~~L~~d~--~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRg  205 (1265)
T KOG1920|consen  139 ----------DFEPIAEKPLDADD--ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE-QDDHKTSISWRG  205 (1265)
T ss_pred             ----------cccchhcccccccc--ccccccceecccccceeeecchhhhcccccccccccccchh-hccCCceEEEcc
Confidence                      22222111110000  011222233333 1112222222211111110000 00001 112224789999


Q ss_pred             CC-eEEEE-----eCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCeeeeceee
Q 006126          426 QD-LFAFG-----FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       426 ~~-~l~s~-----~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      || ++++.     ..-+.|++||.+ |..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.-+. -......+
T Consensus       206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l  283 (1265)
T KOG1920|consen  206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVL  283 (1265)
T ss_pred             CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-cccccccc
Confidence            99 87773     233799999976 554433333445556899999999988754   456788887654 11112222


Q ss_pred             eeeeeccCCCCCCeEEEEEecCCcEEEE---EecC-cEEEEeCCCCc
Q 006126          497 HSFQTGLVPETTIVNHIQFHPDQIHLLS---IHEG-QIDVYEAPTLN  539 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~---~~d~-~i~iwd~~~~~  539 (660)
                      . .+...    ..+..++|+.++..|++   ...+ .|++|-+.+..
T Consensus       284 ~-~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  284 P-FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             C-Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            2 12221    34889999999999997   3344 49999987654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=7.4e-07  Score=82.23  Aligned_cols=157  Identities=16%  Similarity=0.123  Sum_probs=99.7

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH  388 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~  388 (660)
                      |..+-.+-+.+-.++.++++..||.+.+++.+....               .......      .|.+.......+ ++.
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~---------------~~~~i~~------~~~~~as~~~~~~~~~  146 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA---------------LMSRIPS------IHSGSASRKICRHGNS  146 (319)
T ss_pred             cCCCCCcccccccCCceEecCCCceEEEEechHHHh---------------hhhhccc------ccccccccceeecccE
Confidence            343333334444566789999999999887654211               0000000      111111111111 444


Q ss_pred             EEEEe------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCe
Q 006126          389 LFSAS------GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI  459 (660)
Q Consensus       389 l~s~~------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v  459 (660)
                      +.++.      -+..+.|+++..+....-......|.+++-+|..  .+++|+.||.+.+||.+.... ...+..|+..+
T Consensus       147 i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i  226 (319)
T KOG4714|consen  147 ILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI  226 (319)
T ss_pred             EecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence            44443      2456666665433222222223448899999977  888999999999999987643 34567799999


Q ss_pred             EEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 006126          460 TCLAYSL-SLNVLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       460 ~~l~~sp-~~~~l~s~s~dg~i~vwd~~~  487 (660)
                      +.+.|+| ++..|++++.||.+..||..+
T Consensus       227 ~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  227 WEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999999 678899999999999999876

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.54  E-value=8.7e-07  Score=81.80  Aligned_cols=198  Identities=11%  Similarity=0.050  Sum_probs=117.8

Q ss_pred             eEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee------------eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 006126          418 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTK------------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA  485 (660)
Q Consensus       418 v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~------------~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~  485 (660)
                      ++.+.++.+..|+++..++.+..+..-.+.+.            +.+..|.++-.+-..+--++.++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            44444444436666666666555554433332            223333333333233334678999999999999998


Q ss_pred             CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126          486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS  559 (660)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  559 (660)
                      +.-..    ....+...|.    .-.+.+....+..+.++      .-+..+.|+++-.+....-..  ....|++++-+
T Consensus       119 ~~~~~----~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~~~~v~~l~~h  188 (319)
T KOG4714|consen  119 DKDLA----LMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--ALDAVTALCSH  188 (319)
T ss_pred             hHHHh----hhhhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc--ccccchhhhCC
Confidence            76211    1111122221    12223333445555542      234567777653332211111  13448889988


Q ss_pred             cCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          560 CDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       560 ~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      |.. +.+++|+.||.+-+||.+.......+-      ..| ..+++  .|-|||.++..|+++++||.+.-||..+
T Consensus       189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l------~ah-k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL------KAH-KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccEEEEecCCCeEEEEEcccccchHHHH------HHh-hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence            865 566788889999999999874332221      123 55677  9999999999999999999999999874

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=3.5e-05  Score=75.73  Aligned_cols=240  Identities=20%  Similarity=0.096  Sum_probs=142.3

Q ss_pred             CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc
Q 006126          374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK  447 (660)
Q Consensus       374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~  447 (660)
                      +|...|..++|+   ..++..++ +..|+|.|+++..++..+..+ ..+++++|.-|.  .|..|...|.|.+||++..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            688889999999   34678888 999999999999999888877 889999999988  88899999999999998643


Q ss_pred             e-eeEeec--cCCCeEEEEE------eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126          448 T-KAKLKG--HQNRITCLAY------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  518 (660)
Q Consensus       448 ~-~~~~~~--~~~~v~~l~~------sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  518 (660)
                      - +..+.+  ...+|..++.      .+.|.+++..+.+  +..|.+.-...   .... +.+-..+  +...++..++-
T Consensus       270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~---~~p~-vlele~p--G~cismqy~~~  341 (463)
T KOG1645|consen  270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE---CLPC-VLELEPP--GICISMQYHGV  341 (463)
T ss_pred             chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc---CCCc-ccccCCC--cceeeeeecCc
Confidence            2 222221  2233443332      3345555555443  33555543211   0111 1111111  56667777776


Q ss_pred             CcEEEEE--ecC---cEE----EEeCCCCceeeeecCCCCCCC-----eEEEEE-ccCCCEEEE-EecCCeEEEEECCCC
Q 006126          519 QIHLLSI--HEG---QID----VYEAPTLNHTSQLVPDKMDLP-----ITYATY-SCDGKCIYV-SCKSGHVKVFDTSTL  582 (660)
Q Consensus       519 ~~~l~~~--~d~---~i~----iwd~~~~~~~~~~~~~~~~~~-----v~~~~~-s~dg~~l~s-g~~dg~I~iwd~~~~  582 (660)
                      .+.++.+  .+.   +++    --|..+|.++..-........     -+..-+ .++.++++. |..-+.+.+||..++
T Consensus       342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence            6666653  211   111    122334443322211100000     011122 345566554 444588999999999


Q ss_pred             eeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEeCCCeEEEEeCCC
Q 006126          583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s~Dg~v~iw~~~~  634 (660)
                      +.++.+..         +.++.  ++....+++. +|++- .|..++||+.++
T Consensus       422 evvQ~l~~---------~epv~--Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  422 EVVQTLAL---------SEPVL--DICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             heeeeccc---------Cccee--ecceeecCCcchhhhe-ecceEEEEecCC
Confidence            99999875         34455  5555444444 55555 466899988654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.53  E-value=7.6e-05  Score=80.83  Aligned_cols=290  Identities=14%  Similarity=0.089  Sum_probs=166.0

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe--EEEEEeC-CEEEEEe-CCcEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI--SCFALRG-SHLFSAS-GGKIS  398 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~s~-~~l~s~~-dg~I~  398 (660)
                      +..++.++.++.+.-.|..+++.            +|.........     .....+  ..+...+ ..++.++ ++.|.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~------------~W~~~~~~~~~-----~~~~~~~~~g~~~~~~~~V~v~~~~g~v~  123 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKV------------LWRYDPKLPAD-----RGCCDVVNRGVAYWDPRKVFFGTFDGRLV  123 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChh------------hceeCCCCCcc-----ccccccccCCcEEccCCeEEEecCCCeEE
Confidence            34566777788888888877764            56543322100     000001  1123334 7777777 99999


Q ss_pred             EEECCCCeEEEEEcCCCCC-----eE-EEEEcCCCeEEEEe---------CCCeEEEEeCCCCceeeEeeccCC------
Q 006126          399 IFSLETFQTLATFANPPPI-----AT-YFILLPQDLFAFGF---------DDSSILVHCPCTKKTKAKLKGHQN------  457 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~-----v~-~v~~sp~~~l~s~~---------~d~~I~iwd~~~~~~~~~~~~~~~------  457 (660)
                      .+|.++|+.+..+......     +. +..+. ++.++.++         .++.+..+|..+|+.+-.+.....      
T Consensus       124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~  202 (488)
T cd00216         124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP  202 (488)
T ss_pred             EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC
Confidence            9999999999887643321     11 11221 24444443         367899999999998876643211      


Q ss_pred             --------------Ce-EEEEEeCCCCEEEEEeCCC------------------cEEEEEcCCCeeeeceeeeee----e
Q 006126          458 --------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKLCSKFLHSF----Q  500 (660)
Q Consensus       458 --------------~v-~~l~~sp~~~~l~s~s~dg------------------~i~vwd~~~~~~~~~~~~~~~----~  500 (660)
                                    .+ ...++.+.+..++.++.++                  .|.-+|.++|+..-.......    .
T Consensus       203 ~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~  282 (488)
T cd00216         203 TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY  282 (488)
T ss_pred             CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence                          01 1234455566777787665                  699999999876543322100    0


Q ss_pred             eccCCCCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE--------
Q 006126          501 TGLVPETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS--------  568 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg--------  568 (660)
                      .+..+  ..+..+. .-+|.   .+++ +.+|.+...|.++|+.+-.....     ...++.+|  ..++.+        
T Consensus       283 ~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~  352 (488)
T cd00216         283 DGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGL  352 (488)
T ss_pred             ccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccC
Confidence            01110  0111111 11333   3444 47899999999999987665321     11233334  333332        


Q ss_pred             ----------ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          569 ----------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       569 ----------~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                                ..+|.|.-.|+.+|+.+...........-....+.....+..   .+..+..++.||.|+.+|..+|+..
T Consensus       353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCcee
Confidence                      236789999999999888876421000000000111111221   4568888889999999999999999


Q ss_pred             ccCCC
Q 006126          639 WGKLP  643 (660)
Q Consensus       639 w~~~~  643 (660)
                      |....
T Consensus       430 W~~~~  434 (488)
T cd00216         430 WKFRT  434 (488)
T ss_pred             eEEEC
Confidence            98554

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.53  E-value=0.00019  Score=66.79  Aligned_cols=141  Identities=13%  Similarity=0.042  Sum_probs=93.0

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIF  400 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iw  400 (660)
                      ..+++.|+..+.+.--|.++++.            .|...            -...+.+-+.- |++++.|+ .|.+.+.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~------------~We~i------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl   78 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNL------------IWEAI------------LGVRIECSAIVVGDFVVLGCYSGGLYFL   78 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcE------------Eeehh------------hCceeeeeeEEECCEEEEEEccCcEEEE
Confidence            34667777777776655555542            44432            23345455555 89999999 9999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      +.++|.....+.....--......+++ .+..|+.|+..+..|.++..++.+.+-..+...+-+..|-...|..+...|.
T Consensus        79 ~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen   79 CVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             EecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence            999998888776433322344567788 9999999999999999998888876644443344456663334444455555


Q ss_pred             EEEEEcCC
Q 006126          480 LCVWDAVG  487 (660)
Q Consensus       480 i~vwd~~~  487 (660)
                      +.--..+.
T Consensus       159 vlavt~~~  166 (354)
T KOG4649|consen  159 VLAVTKNP  166 (354)
T ss_pred             EEEEccCC
Confidence            54444433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=2.5e-07  Score=88.62  Aligned_cols=159  Identities=15%  Similarity=0.109  Sum_probs=115.7

Q ss_pred             EEEe----CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-----ceeeE
Q 006126          382 FALR----GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-----KTKAK  451 (660)
Q Consensus       382 v~~s----~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-----~~~~~  451 (660)
                      ++|+    +-.+.+|.+..|-+-|+++|.. +.|. ....|.+..|...+ +++.|..+|.|..+|++.+     .+.+.
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            3666    4454455588999999988643 3343 55678888888877 9999999999999999865     34444


Q ss_pred             eeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc
Q 006126          452 LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ  529 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~  529 (660)
                      +. |.+.|+++..-. ++.+|++.+.+|+|++||++--+.  ...+. ..+||.+. ..-.-+...+....+++ |.|..
T Consensus       295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--~~~V~-qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--KKSVM-QYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--cccee-eeeccccc-ccccccccccccceEEEccCeeE
Confidence            44 889999988766 788999999999999999987332  22344 56777531 11222344555556666 78999


Q ss_pred             EEEEeCCCCceeeeecCC
Q 006126          530 IDVYEAPTLNHTSQLVPD  547 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~~  547 (660)
                      .+||.+++|..+.+++..
T Consensus       370 tRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             EEEEecccCceeeccCCC
Confidence            999999999998887653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.51  E-value=0.00026  Score=70.05  Aligned_cols=267  Identities=19%  Similarity=0.253  Sum_probs=158.1

Q ss_pred             CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcEEEEeccCCceeeeeeccc
Q 006126          284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      +.+.+.|...    +++.-. +    -.+-.-.+..||||+.+++++.          .-.|.+||.++-..        
T Consensus        17 ~rv~viD~d~----~k~lGm-i----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~--------   79 (342)
T PF06433_consen   17 SRVYVIDADS----GKLLGM-I----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP--------   79 (342)
T ss_dssp             EEEEEEETTT----TEEEEE-E----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE--------
T ss_pred             ceEEEEECCC----CcEEEE-e----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc--------
Confidence            3577777663    333332 1    1344455778999999887653          12344555444432        


Q ss_pred             eeEEEecCCCCceeeec-ccCCCC----CCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126          354 MESQLYQPSSKLVMTND-IAADPK----DSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFIL  423 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~h~----~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~  423 (660)
                                   .... ++.+|.    .....++++  +++++...   ...|.|-|+..++.+.++....    |.-.
T Consensus        80 -------------~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i  142 (342)
T PF06433_consen   80 -------------TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI  142 (342)
T ss_dssp             -------------EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE
T ss_pred             -------------cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE
Confidence                         2111 111111    112234555  77777666   4789999999999988876443    3333


Q ss_pred             cCCC--eEEEEeCCCeEEEEeCC-CCceeeEe----eccCCCe-EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126          424 LPQD--LFAFGFDDSSILVHCPC-TKKTKAKL----KGHQNRI-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       424 sp~~--~l~s~~~d~~I~iwd~~-~~~~~~~~----~~~~~~v-~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  495 (660)
                      -|.+  .|.+-+.||++.-..+. .|+...+.    .....++ ..-++...+..++..+.+|.|+--|+.........+
T Consensus       143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~  222 (342)
T PF06433_consen  143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP  222 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred             EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc
Confidence            4444  78888899998888877 45554322    1112222 233455566677778999999999998765333233


Q ss_pred             eeeeee------ccCCCCCCeEEEEEecCCcEEEE-E---ecC-------cEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126          496 LHSFQT------GLVPETTIVNHIQFHPDQIHLLS-I---HEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYATY  558 (660)
Q Consensus       496 ~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~-~---~d~-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  558 (660)
                      .. +..      +-.|  +.-.-+++++....|++ -   .++       .|.++|+.+++.+.++..   ..++.++..
T Consensus       223 ~~-~~t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~V  296 (342)
T PF06433_consen  223 WS-LLTDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAV  296 (342)
T ss_dssp             EE-SS-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEE
T ss_pred             cc-ccCccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEE
Confidence            32 111      1111  34445888886666554 2   222       499999999999999865   456789999


Q ss_pred             ccCCC-EEEEE-ecCCeEEEEECCCCeeEEEeec
Q 006126          559 SCDGK-CIYVS-CKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       559 s~dg~-~l~sg-~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      +.|.+ +|++. ..++.+.+||..+|+.+..+..
T Consensus       297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            98776 55544 4578999999999999988763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=9.1e-07  Score=87.67  Aligned_cols=214  Identities=13%  Similarity=0.048  Sum_probs=145.5

Q ss_pred             CCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC--C-ceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCe
Q 006126          414 PPPIATYFILLPQDLFAFGFDDSSILVHCPCT--K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK  489 (660)
Q Consensus       414 ~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~--~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~  489 (660)
                      |...|+.+.......+.+++.||.++.|.-..  | +.+..+..|.+.|.+++.+-+|..+.+.+. |..++++|+.+..
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            55566665554444899999999999998543  1 234455668888999999999999999777 9999999998854


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecC-C-cEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPD-Q-IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI  565 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~-~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  565 (660)
                      ......+.     .-|  +.+ +...+|. - ..++++  .++.+.++|-....+..-+...-|..+|..+.+.+-++.+
T Consensus        88 minmiKL~-----~lP--g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   88 MINMIKLV-----DLP--GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             hhhhcccc-----cCC--Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence            43222222     111  122 2222232 1 234444  7789999998755533333334579999999999999999


Q ss_pred             EEEecCCeEEEEECCC------CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          566 YVSCKSGHVKVFDTST------LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       566 ~sg~~dg~I~iwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ++....|.|.-|....      .++...++..... .|-....-...++.|+| ++..+.+-+.|.+|++++..+|+.
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchh-hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchh
Confidence            9999999999999873      2222222211000 01112223356899999 899999999999999999999875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.48  E-value=0.00014  Score=81.34  Aligned_cols=233  Identities=12%  Similarity=0.168  Sum_probs=144.1

Q ss_pred             CCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeC----CCCc
Q 006126          376 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP----CTKK  447 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~----~~~~  447 (660)
                      ...|.++.|.  ++.++.+. +|.|.+-|..+.... ....-..+|.+++|+||+ .++..+.++++.+-+-    -..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            3678889988  55565555 899888888765432 223446789999999999 8888887777765442    1111


Q ss_pred             e-------------------eeEeeccC---------------------CCeEEEEEeCCCCEEEEEe----CC-CcEEE
Q 006126          448 T-------------------KAKLKGHQ---------------------NRITCLAYSLSLNVLVSSG----AD-AQLCV  482 (660)
Q Consensus       448 ~-------------------~~~~~~~~---------------------~~v~~l~~sp~~~~l~s~s----~d-g~i~v  482 (660)
                      .                   -..|.|..                     +.=+.|.|--||.++++..    .+ +.|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            1                   11222111                     1123588999999988732    23 78999


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCceeeeec--CCCCCCCeEEE
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQLV--PDKMDLPITYA  556 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~  556 (660)
                      ||.+ |.....      .....   +.-.+++|-|.|..+++ .   +|+.|.+|.- +|-....+.  .+.....|..+
T Consensus       227 ~drE-g~Lns~------se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  227 YDRE-GALNST------SEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             eccc-chhhcc------cCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhee
Confidence            9987 322111      11111   34458999999999998 2   5677999985 333322221  11224459999


Q ss_pred             EEccCCCEEEE---EecCCeEEEEECCCCe--eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          557 TYSCDGKCIYV---SCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       557 ~~s~dg~~l~s---g~~dg~I~iwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      +|+.++..|++   ......|++|-+.+..  +.+.+..+        .  ..  -+.|+|.....+..-..+|...+++
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~--------~--~~--~~~W~p~~~~~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS--------Q--KA--LLMWDPVTEKTLHVLRESGQRLVRD  363 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc--------c--cc--cccccCCCceeEEEEecCCcEEEEE
Confidence            99999999997   4555669999987753  22233221        1  11  2677775555555555666555544


Q ss_pred             C
Q 006126          632 P  632 (660)
Q Consensus       632 ~  632 (660)
                      .
T Consensus       364 ~  364 (1265)
T KOG1920|consen  364 F  364 (1265)
T ss_pred             E
Confidence            4

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.47  E-value=5.8e-07  Score=59.79  Aligned_cols=39  Identities=33%  Similarity=0.579  Sum_probs=37.0

Q ss_pred             CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126          446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  484 (660)
Q Consensus       446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd  484 (660)
                      |+++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.47  E-value=3.5e-06  Score=90.59  Aligned_cols=179  Identities=18%  Similarity=0.221  Sum_probs=129.4

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      +..++.|+ ...+..+|+.+.+..+...-....|.-+  ..++ .+.+|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            45666677 7888899999988877766545455433  3456 899999999999999999999999999999998865


Q ss_pred             EeCCCCEEEEEeC---------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEEecCcEEE
Q 006126          464 YSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDV  532 (660)
Q Consensus       464 ~sp~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~d~~i~i  532 (660)
                      .  .|+.|++++.         |.-|+|||++.-+.+  .+++ +..       ...-+.|+|.  .+.++++..|...+
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~-~~~-------~P~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQ-FPY-------GPQFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcc-ccc-------CchhhhhcccccceEEEEecccceee
Confidence            5  6889998875         556899999984322  2222 221       2234677775  33334478899999


Q ss_pred             EeCCC-Cce-eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          533 YEAPT-LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       533 wd~~~-~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      .|..+ +.+ ...+..+.....+..+++|++|+.++.|..+|.|.+|.
T Consensus       293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            99432 111 22222222255599999999999999999999999997

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=1.7e-05  Score=85.10  Aligned_cols=203  Identities=12%  Similarity=0.097  Sum_probs=129.2

Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-eEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeee-c
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLC-S  493 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~-~  493 (660)
                      +|++.+ .++.|+.+|.|.+++- +-+.++.+..+... |..+....+..+|++.+.|+     .+++||+..-+... .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            466777 9999999999988873 34555777777766 55543333446888877765     48999997643222 1


Q ss_pred             eee-----eeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC---CCceeeeecCCCCCCCeEEEEEccCCCE
Q 006126          494 KFL-----HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP---TLNHTSQLVPDKMDLPITYATYSCDGKC  564 (660)
Q Consensus       494 ~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~s~dg~~  564 (660)
                      ..+     .+...+..  +.++.+++.+.+-+.+++| .+|.|..+.-.   .......+. +....+|+.+++..+++-
T Consensus       109 ~c~~~~ri~~~~np~~--~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTN--PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITGLALRSDGKS  185 (933)
T ss_pred             ceeeeeeeeccCCCCC--CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCceeeEEecCCce
Confidence            122     11111212  2688899999998889998 88988888522   111112222 223889999999999887


Q ss_pred             EEEEecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126          565 IYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       565 l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      ++....-..|.+|.+....+ ...+.          .+++...|.++++. ...+++|+ +..|.+|+....+.-|.
T Consensus       186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~~-t~qfIca~-~e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  186 VLFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSDG-TYQFICAG-SEFLYFYDSDGRGPCFA  250 (933)
T ss_pred             eEEEEecceeEEEEecCCCcceeeec----------cCCccceeeecCCC-CccEEEec-CceEEEEcCCCcceeee
Confidence            44444556799999984332 22233          22233448899884 33355554 44699999886555443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.44  E-value=0.00048  Score=74.67  Aligned_cols=236  Identities=14%  Similarity=0.137  Sum_probs=138.0

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe-EEEEEeCCEEEEEe---------
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS---------  393 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~v~~s~~~l~s~~---------  393 (660)
                      ..++.++.+|.+.-+|.++++.            +|.........      ....+ ....+.+..++.++         
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~------------~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~  172 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQ------------VWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACG  172 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCE------------eeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCC
Confidence            5677888899999888888774            56543321100      00000 01112234444432         


Q ss_pred             -CCcEEEEECCCCeEEEEEcCCCC--------------------Ce-EEEEEcCCC-eEEEEeCCC--------------
Q 006126          394 -GGKISIFSLETFQTLATFANPPP--------------------IA-TYFILLPQD-LFAFGFDDS--------------  436 (660)
Q Consensus       394 -dg~I~iwd~~~~~~~~~~~~~~~--------------------~v-~~v~~sp~~-~l~s~~~d~--------------  436 (660)
                       +|.+..+|..+|+.+..+.....                    .+ ...++.+.+ .++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence             57899999999998887753211                    01 123445445 777777665              


Q ss_pred             ----eEEEEeCCCCceeeEeeccCCCe------EEEEEe----CCCC---EEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          437 ----SILVHCPCTKKTKAKLKGHQNRI------TCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       437 ----~I~iwd~~~~~~~~~~~~~~~~v------~~l~~s----p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                          .|.-+|..+|+.+-.+..-....      ....+.    -+|.   .++.++.+|.+...|.++|+.+-.....  
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--  330 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--  330 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence                79999999999887664211111      011111    1343   5778889999999999998765433321  


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE------------------EecCcEEEEeCCCCceeeeecCCCCC------CCeEE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS------------------IHEGQIDVYEAPTLNHTSQLVPDKMD------LPITY  555 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~------------------~~d~~i~iwd~~~~~~~~~~~~~~~~------~~v~~  555 (660)
                                ...++.+| +...+.                  ..+|.+.-.|+.+|+.+-+.....+.      .+...
T Consensus       331 ----------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~  399 (488)
T cd00216         331 ----------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG  399 (488)
T ss_pred             ----------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC
Confidence                      00122233 111111                  13567888888888876555432111      11111


Q ss_pred             EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      -.....+..|+.|+.||.|+.+|..+|+.+.....
T Consensus       400 ~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         400 GSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             cceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            11113567899999999999999999999998764

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.40  E-value=3.6e-05  Score=81.98  Aligned_cols=187  Identities=10%  Similarity=0.011  Sum_probs=115.1

Q ss_pred             CCEEEEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEE-------------------EEEcCCC-eE-EEEeCCCeEEEE
Q 006126          386 GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATY-------------------FILLPQD-LF-AFGFDDSSILVH  441 (660)
Q Consensus       386 ~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~-------------------v~~sp~~-~l-~s~~~d~~I~iw  441 (660)
                      |++|+.-.  ...|-..++...++-+.+.-+ ...+..                   +=+.||| .+ .+.-..+.+.+.
T Consensus       141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI  220 (635)
T PRK02888        141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV  220 (635)
T ss_pred             eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence            67777776  467777777766655544311 111111                   2234555 33 223334567778


Q ss_pred             eCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC----------------------------------------CCcEE
Q 006126          442 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------------------------------------DAQLC  481 (660)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~----------------------------------------dg~i~  481 (660)
                      |..+.+...++.- .+....+.++|+|+++++.+.                                        ++.|.
T Consensus       221 D~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~  299 (635)
T PRK02888        221 DAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP  299 (635)
T ss_pred             ECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence            8887766655543 224456778888888777651                                        23466


Q ss_pred             EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce------------eeeecCC
Q 006126          482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH------------TSQLVPD  547 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~------------~~~~~~~  547 (660)
                      +.|.++........+..++.+     .....+.++|||+++++ + .+++|.|.|+.+.+.            +..... 
T Consensus       300 VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-  373 (635)
T PRK02888        300 VVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-  373 (635)
T ss_pred             EEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence            666665100000122223333     35678999999999998 4 789999999987553            233322 


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                        .......+|+++|+...+-.-|..|..||+.+
T Consensus       374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              33345688999998777888899999999886

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=9e-06  Score=86.59  Aligned_cols=185  Identities=14%  Similarity=0.194  Sum_probs=130.5

Q ss_pred             CCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          375 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       375 h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      ....++|+++++++|+-|. +|.|++++... .. .+...|...      ..+| ++++|+.||+|.|..+-+.+...++
T Consensus        38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hhhHHHHHHhhcceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            3456778888899999999 99999999763 33 332233322      5577 9999999999999999888877777


Q ss_pred             eccCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec
Q 006126          453 KGHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE  527 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d  527 (660)
                      . ...++.+++++|+     .+.+++|+..| +.++.-+--..  ...+  ......   +.|.++.|.  |.++|-..|
T Consensus       110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v--~l~~~e---G~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSV--VLSEGE---GPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--ccce--eeecCc---cceEEEEec--CcEEEEecC
Confidence            6 5578999999997     56799999888 76665332110  1111  111222   689999998  778888888


Q ss_pred             CcEEEEeCCCCceeeeecCCCC----CCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      -.|++||+.+++.+..+..+..    ......+.|.++ ..|+.| +..+|+|..++
T Consensus       179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEe-cCCeEEEEEEe
Confidence            8899999999888777765321    122345777655 445555 44568888877

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.35  E-value=3.9e-07  Score=54.07  Aligned_cols=27  Identities=41%  Similarity=0.557  Sum_probs=24.8

Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHhhhc
Q 006126           66 EELIYLIHQFLNEEEFKETLHKLEQET   92 (660)
Q Consensus        66 ~e~~~lI~q~L~e~G~~~sa~~L~~Es   92 (660)
                      +++++||++||.++||.+||.+|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999996

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=1.9e-05  Score=84.10  Aligned_cols=188  Identities=19%  Similarity=0.247  Sum_probs=127.1

Q ss_pred             CeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126          417 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       417 ~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      .++|++++.. .|+-|+-+|.|++++.. |.. .+...|...      ..+|.++++|+.||+|.|-.+-+++......+
T Consensus        41 ~is~~av~~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df  111 (846)
T KOG2066|consen   41 AISCCAVHDK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF  111 (846)
T ss_pred             HHHHHHhhcc-eeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence            3455555432 78999999999999965 333 333334433      55899999999999999999888654333333


Q ss_pred             eeeeeccCCCCCCeEEEEEecC-----CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126          497 HSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      +          .++.+++++|+     .+.+++| ..| +.++.-+=.............++|.+++|.  |+++|-++.
T Consensus       112 ~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  112 K----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             C----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence            3          47899999998     4556664 555 777653311111111222348999999996  889998887


Q ss_pred             CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          571 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       571 dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +| |+|||+.+++.+..++++...+    ......-.+.|.+ + ..|+.|-.| +|+|..+..
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~-~-~~LVIGW~d-~v~i~~I~~  234 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD-E-DRLVIGWGD-SVKICSIKK  234 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC-C-CeEEEecCC-eEEEEEEec
Confidence            77 9999999999888877653111    2233344788987 3 566665444 799988873

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.28  E-value=0.0016  Score=64.66  Aligned_cols=243  Identities=13%  Similarity=0.074  Sum_probs=135.2

Q ss_pred             eEecCCCCEEEEEeC----------CCcEEEEeccCcCCCcceeeeecCCC---CCCCCeEEEEEecCCCEEEEEECCCc
Q 006126          268 STSLPDADSAVCAKS----------LEKSVNLKLQLINEPSECRTLLLPDN---SFGGRVVRLIYSHSGDFLVALTQTAT  334 (660)
Q Consensus       268 ~~~spdg~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~l~~~---~h~~~V~~~~~spdg~~l~s~s~dg~  334 (660)
                      +..||||+.+++++.          .-.|.+||..+   -.....+.+|..   .........++|.||++++.      
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T---L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V------  111 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT---LSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYV------  111 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT---TEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEE------
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc---CcccceEecCCcchheecccccceEEccCCcEEEE------
Confidence            477999999887542          24589999986   333344445541   01122234566666666544      


Q ss_pred             EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECC-CCeEEEEE
Q 006126          335 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLE-TFQTLATF  411 (660)
Q Consensus       335 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~-~~~~~~~~  411 (660)
                         |++...          .++.+.|...++++...-    ...+..+--+ +.-+.+-| ||.+.-..+. .|+..++.
T Consensus       112 ---~N~TPa----------~SVtVVDl~~~kvv~ei~----~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen  112 ---QNFTPA----------TSVTVVDLAAKKVVGEID----TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             ---EEESSS----------EEEEEEETTTTEEEEEEE----GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ---EccCCC----------CeEEEEECCCCceeeeec----CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence               443322          234566666666554331    1223333223 44455555 9998888887 45554332


Q ss_pred             ----cCCCCCe-EEEEEcCCC-eEEEEeCCCeEEEEeCCCCce--eeEeec----------cCCCeEEEEEeCCCCEEEE
Q 006126          412 ----ANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKG----------HQNRITCLAYSLSLNVLVS  473 (660)
Q Consensus       412 ----~~~~~~v-~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~--~~~~~~----------~~~~v~~l~~sp~~~~l~s  473 (660)
                          .....++ ..-++...+ .++.-+.+|.|+-.|+.....  ...+..          -.+.-.-+++++..+.|.+
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence                1222222 233455555 666688899999888875532  122211          0123345678876655554


Q ss_pred             Ee---CCC-------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE-EEE-E-ecCcEEEEeCCCCce
Q 006126          474 SG---ADA-------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-I-HEGQIDVYEAPTLNH  540 (660)
Q Consensus       474 ~s---~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~-~-~d~~i~iwd~~~~~~  540 (660)
                      .-   .++       .|.++|+.+++.+...++.          ..+.+|..+.+.+- |++ . .++.+.+||..+|+.
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            21   122       4888899997766655554          46779999998774 444 4 568999999999999


Q ss_pred             eeeecC
Q 006126          541 TSQLVP  546 (660)
Q Consensus       541 ~~~~~~  546 (660)
                      +.++..
T Consensus       325 ~~~~~~  330 (342)
T PF06433_consen  325 VRSIEQ  330 (342)
T ss_dssp             EEEE--
T ss_pred             Eeehhc
Confidence            988865

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.28  E-value=2.9e-06  Score=56.37  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=35.9

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 006126          405 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC  442 (660)
Q Consensus       405 ~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd  442 (660)
                      |+++.++.+|...|++++|+|++ .|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.27  E-value=2.8e-05  Score=83.88  Aligned_cols=184  Identities=11%  Similarity=0.094  Sum_probs=125.8

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                      .++.|+--..+..+|+++++..+...-..+.|.-+.  .+++.+.+|...|+|.+-|.++.     ..++ ....|+   
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~-----~~ih-t~~aHs---  217 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF-----ETIH-TFDAHS---  217 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcC-----ceee-eeeccc---
Confidence            677787777888999998877766654444455443  47899999999999999999983     4444 566777   


Q ss_pred             CCeEEEEEecCCcEEEE-Ee---------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEE
Q 006126          508 TIVNHIQFHPDQIHLLS-IH---------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKV  576 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~-~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~i  576 (660)
                      +.|..+..  .|+.|++ |.         |.-|+|||++..+.+.-+...   ....-+.|.|.- ..+++.+..|...+
T Consensus       218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceee
Confidence            57766544  5778887 42         345899999988766555432   222456777753 56777888899999


Q ss_pred             EECCC-Cee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          577 FDTST-LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       577 wd~~~-~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      -|..+ +.+ ......+   +.   +.  .+..+.+++ +++.+|.|..+|.|.+|. ...++
T Consensus       293 vd~~~lsNP~~~~~~v~---p~---~s--~i~~fDiSs-n~~alafgd~~g~v~~wa-~~~~P  345 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVN---PN---GS--GISAFDISS-NGDALAFGDHEGHVNLWA-DRPQP  345 (1118)
T ss_pred             ccccccCCCccceeEEc---cC---CC--cceeEEecC-CCceEEEecccCcEeeec-CCCCC
Confidence            88432 111 1111111   11   11  245899999 899999999999999998 33333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=0.00017  Score=75.98  Aligned_cols=221  Identities=10%  Similarity=0.053  Sum_probs=111.9

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL  389 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l  389 (660)
                      ...+..+.++|+|++++. +.||...|+.......                            ...+.-...+|. .+.+
T Consensus        32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~----------------------------k~~G~g~~~vw~~~n~y   82 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN----------------------------KAFGSGLSFVWSSRNRY   82 (443)
T ss_dssp             SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE----------------------------EEEEE-SEEEE-TSSEE
T ss_pred             CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc----------------------------cccCceeEEEEecCccE
Confidence            446789999999998887 4567776665222111                            011223456677 5666


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      |+-. .++|.++.--+.+..+.++.. ..+..+-.   | .|...+.+ .|.+||..+++.+..+...  +|..+.|+++
T Consensus        83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~  155 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD  155 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred             EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence            6666 788999743323222233322 12333322   7 66666544 8999999999999988743  3899999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCC------eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce-
Q 006126          468 LNVLVSSGADAQLCVWDAVGW------KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-  540 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~-  540 (660)
                      |.+++..+.+ .+.+++.+..      +.-....+..+.+-.    ..|.+.+|..+  .++-...+.++-  +..|.. 
T Consensus       156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~~  226 (443)
T PF04053_consen  156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSNHLKY--LVNGETG  226 (443)
T ss_dssp             SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TTEEEE--EETTEEE
T ss_pred             CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCCeEEE--EEcCCcc
Confidence            9999988754 6777765442      000000122111101    47888999876  333333336655  333432 


Q ss_pred             -eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          541 -TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       541 -~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                       +..+     ..+++=+.+.+..+.++....|+.|..+.+..
T Consensus       227 ~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  227 IIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             eEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence             2333     45667777777777888888888888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=6.6e-05  Score=73.86  Aligned_cols=230  Identities=13%  Similarity=0.057  Sum_probs=131.7

Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC-CEEEE
Q 006126          397 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVS  473 (660)
Q Consensus       397 I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s  473 (660)
                      +++.+..+.+....+..+...|..++|+|..  ++..++.+..|+|.|+++..++..+..+ ..+++++|.-|. .++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            5566666666666667888899999999987  7899999999999999999888888877 789999998865 45677


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec------CCcEEEEEecCcEEEEeCCC--Cceeeeec
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLSIHEGQIDVYEAPT--LNHTSQLV  545 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~~~~d~~i~iwd~~~--~~~~~~~~  545 (660)
                      |...|.|.+||++..+..    +..+...-.-  .+|..++.-+      .|-.++.+ --....|++.-  +....+..
T Consensus       254 Gl~nG~VlvyD~R~~~~~----~~e~~a~~t~--~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vle  326 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGP----LMELVANVTI--NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLE  326 (463)
T ss_pred             eccCceEEEEEccCCCch----Hhhhhhhhcc--CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCcccc
Confidence            778999999999985421    1101110000  2444443322      33333332 22344565432  22222222


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCC-------eEEE-EECCCCeeEEEeecccccCCCCcCcccceEEEEE-ecCCCC
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSCKSG-------HVKV-FDTSTLELRCQINLTAYAQPGTISLELYPLVIAA-HPLEPN  616 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg-------~I~i-wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~-sp~d~~  616 (660)
                      . +..+.+.++++.+-.+.++.....+       .|-. -|-.+|..++.-....+   |....+.......+ .+ +.+
T Consensus       327 l-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs~~~kl~t~~ai~~~~-~nn  401 (463)
T KOG1645|consen  327 L-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GSKQTKLSTTQAIRAVE-DNN  401 (463)
T ss_pred             c-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CCcccccccccceeccc-ccc
Confidence            2 1255666677766555555443321       1111 12233444433222111   11111111112222 34 556


Q ss_pred             EEEEEe-CCCeEEEEeCCCCceec
Q 006126          617 RIALGL-TNGRVHVIEPLESEVEW  639 (660)
Q Consensus       617 ~l~s~s-~Dg~v~iw~~~~~~~~w  639 (660)
                      +++..+ +.+.+.+||+.+.+...
T Consensus       402 ~iv~~gd~tn~lil~D~~s~evvQ  425 (463)
T KOG1645|consen  402 YIVVVGDSTNELILQDPHSFEVVQ  425 (463)
T ss_pred             EEEEecCCcceeEEeccchhheee
Confidence            655444 45789999999987643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.24  E-value=0.00044  Score=72.11  Aligned_cols=109  Identities=14%  Similarity=0.132  Sum_probs=81.0

Q ss_pred             CCeEEEEEe---CCEEEEEe-----CC----cEEEEECCCCeEEEE--E-cCCCCCeEEEEEcCCC-eEEEEeCCCeEEE
Q 006126          377 DSISCFALR---GSHLFSAS-----GG----KISIFSLETFQTLAT--F-ANPPPIATYFILLPQD-LFAFGFDDSSILV  440 (660)
Q Consensus       377 ~~v~~v~~s---~~~l~s~~-----dg----~I~iwd~~~~~~~~~--~-~~~~~~v~~v~~sp~~-~l~s~~~d~~I~i  440 (660)
                      ....++.|+   +..+.+..     +|    .-.+|++..++..+.  . -.....|.|++++|+. .++.|+.||+|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            344677777   45555543     33    345677765543221  1 1567789999999999 9999999999999


Q ss_pred             EeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126          441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       441 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~  487 (660)
                      ||...+..  .+....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus       286 yD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  286 YDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            99876632  2333556678999999999999999999999999976

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.22  E-value=0.003  Score=68.76  Aligned_cols=294  Identities=14%  Similarity=0.048  Sum_probs=160.0

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS  401 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd  401 (660)
                      +..++.++.++.|.-.|..+++.            +|...................-..+++.+..++.++ |+.+.-+|
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~------------lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALD  136 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKE------------LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALD  136 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCce------------eeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEE
Confidence            44566677777787777777764            554332110000000000000112344455666666 99999999


Q ss_pred             CCCCeEEEEEcCCCCC-eEEEEEcC---CCeEEEEe------CCCeEEEEeCCCCceeeEeeccC---------------
Q 006126          402 LETFQTLATFANPPPI-ATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ---------------  456 (660)
Q Consensus       402 ~~~~~~~~~~~~~~~~-v~~v~~sp---~~~l~s~~------~d~~I~iwd~~~~~~~~~~~~~~---------------  456 (660)
                      ..+|+.+......... -..+.-+|   ++.++++.      .+|.|..+|.++|+.+-.+..-.               
T Consensus       137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~  216 (527)
T TIGR03075       137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG  216 (527)
T ss_pred             CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence            9999998876532110 00111122   44444443      26899999999998876543211               


Q ss_pred             ----------------CCeE-EEEEeCCCCEEEEEeCC-----C-----------cEEEEEcCCCeeeeceeeeeeeecc
Q 006126          457 ----------------NRIT-CLAYSLSLNVLVSSGAD-----A-----------QLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       457 ----------------~~v~-~l~~sp~~~~l~s~s~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                                      ..++ .+++.|...++..+...     +           .|.-.|+++|+..-....    ..|
T Consensus       217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~----~~~  292 (527)
T TIGR03075       217 EPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT----TPH  292 (527)
T ss_pred             ccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC----CCC
Confidence                            1111 23566655566655422     2           566778888775432221    112


Q ss_pred             CC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeee--------ecC--CCCC-CCe-----------
Q 006126          504 VP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQ--------LVP--DKMD-LPI-----------  553 (660)
Q Consensus       504 ~~----~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~--------~~~--~~~~-~~v-----------  553 (660)
                      ..    ......-+.+..+|+   .++. ..+|.+++.|-++|+.+..        +..  .... .++           
T Consensus       293 D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~  372 (527)
T TIGR03075       293 DEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK  372 (527)
T ss_pred             CCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence            10    001112223334666   4444 4889999999999988622        100  0000 000           


Q ss_pred             -----------------EEEEEccCCCEEEEEecC---------------------------------CeEEEEECCCCe
Q 006126          554 -----------------TYATYSCDGKCIYVSCKS---------------------------------GHVKVFDTSTLE  583 (660)
Q Consensus       554 -----------------~~~~~s~dg~~l~sg~~d---------------------------------g~I~iwd~~~~~  583 (660)
                                       ..++++|+..+++....+                                 |.|.-+|+.+|+
T Consensus       373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk  452 (527)
T TIGR03075       373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK  452 (527)
T ss_pred             CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence                             125667766665543322                                 457778888888


Q ss_pred             eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          584 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      ........         .+.....+.-   .+..++.++.||.++.+|..+|+..|....+
T Consensus       453 ~~W~~~~~---------~p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       453 IVWEHKED---------FPLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeeEecCC---------CCCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            88776531         1111001221   3457777888999999999999999976553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.19  E-value=0.0078  Score=65.60  Aligned_cols=245  Identities=16%  Similarity=0.124  Sum_probs=140.1

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE-EEEeCCEEEEEe-------CC
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-------GG  395 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~l~s~~-------dg  395 (660)
                      ..++.++.|+.+.-.|.++++.            +|+.......       ....+.+ ....+..++.+.       +|
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~------------~W~~~~~~~~-------~~~~~tssP~v~~g~Vivg~~~~~~~~~G  181 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKV------------VWSKKNGDYK-------AGYTITAAPLVVKGKVITGISGGEFGVRG  181 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCE------------Eeeccccccc-------ccccccCCcEEECCEEEEeecccccCCCc
Confidence            4567777888888888777764            6664332110       0011111 112244455443       47


Q ss_pred             cEEEEECCCCeEEEEEcCCCC-------------------------------Ce-EEEEEcCCC-eEEEEeCC-----C-
Q 006126          396 KISIFSLETFQTLATFANPPP-------------------------------IA-TYFILLPQD-LFAFGFDD-----S-  436 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~-------------------------------~v-~~v~~sp~~-~l~s~~~d-----~-  436 (660)
                      .|..+|.++|+.+..+..-..                               .+ ..+++.|.. +++.+...     + 
T Consensus       182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~  261 (527)
T TIGR03075       182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH  261 (527)
T ss_pred             EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence            899999999998877542111                               11 134566655 55544421     2 


Q ss_pred             ----------eEEEEeCCCCceeeEeeccCCCeE---------EEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeeece
Q 006126          437 ----------SILVHCPCTKKTKAKLKGHQNRIT---------CLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       437 ----------~I~iwd~~~~~~~~~~~~~~~~v~---------~l~~sp~~~---~l~s~s~dg~i~vwd~~~~~~~~~~  494 (660)
                                +|.-.|+++|+..-.++.....++         -+.+..+|+   .++.++.+|.+.+.|.++|+.+...
T Consensus       262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~  341 (527)
T TIGR03075       262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAE  341 (527)
T ss_pred             CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccc
Confidence                      688889999998877765322222         122234666   6788999999999999998875221


Q ss_pred             eeee---ee---e---c---------------cC-----CC-CC--CeEEEEEecCCcEEEE-Eec--------------
Q 006126          495 FLHS---FQ---T---G---------------LV-----PE-TT--IVNHIQFHPDQIHLLS-IHE--------------  527 (660)
Q Consensus       495 ~~~~---~~---~---~---------------~~-----~~-~~--~v~~~~~sp~~~~l~~-~~d--------------  527 (660)
                      ....   ..   .   +               ..     |. .+  .-..++++|+..++++ ..+              
T Consensus       342 ~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~  421 (527)
T TIGR03075       342 PFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKK  421 (527)
T ss_pred             cccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCC
Confidence            1100   00   0   0               00     00 00  0012566666555554 211              


Q ss_pred             -------------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126          528 -------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       528 -------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~  588 (660)
                                         +.|.-+|+.+++..-.....   .+...-.+.-.+..++.+..||.++.+|.++|+.+...
T Consensus       422 g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~---~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       422 GAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED---FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             CCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC---CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence                               35777888888776555321   11111112235567778888999999999999999987


Q ss_pred             ec
Q 006126          589 NL  590 (660)
Q Consensus       589 ~~  590 (660)
                      ..
T Consensus       499 ~~  500 (527)
T TIGR03075       499 KT  500 (527)
T ss_pred             eC
Confidence            64

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.19  E-value=0.0003  Score=74.34  Aligned_cols=278  Identities=12%  Similarity=0.099  Sum_probs=150.6

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |...|.--+++..++|++.|+.-|.+.+|+...+....                      ...++..+.+.....+  ..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----------------------~~~~~~~~~~~~~~vs~~e~   89 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----------------------LKNEGATGITCVRSVSSVEY   89 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc----------------------ccccCccceEEEEEecchhH
Confidence            66777778888999999999999999988866554311                      1111223334444555  44


Q ss_pred             EEEEEe-CCcEEEEECCCCeEE-----EEE-cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc----eeeEeecc
Q 006126          388 HLFSAS-GGKISIFSLETFQTL-----ATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGH  455 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~-----~~~-~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~----~~~~~~~~  455 (660)
                      ++|.|+ .|.|.++-+..+...     ..+ +.|...|++++|++++ .+++|...|.|..-.+.+..    ..+.+-..
T Consensus        90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~  169 (726)
T KOG3621|consen   90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE  169 (726)
T ss_pred             hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence            556666 689999987653321     111 2467899999999999 99999999999888877621    11222224


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC-CeEEEEEecC-----CcEEEEEecCc
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPD-----QIHLLSIHEGQ  529 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~-----~~~l~~~~d~~  529 (660)
                      .+.|-.+.+. ++..|++... . -.+++++.+.      +.  .-|..+..+ .-...+|-|.     ...|+++. -.
T Consensus       170 ds~IVQlD~~-q~~LLVStl~-r-~~Lc~tE~et------i~--QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG  237 (726)
T KOG3621|consen  170 DSEIVQLDYL-QSYLLVSTLT-R-CILCQTEAET------IT--QIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PG  237 (726)
T ss_pred             CcceEEeecc-cceehHhhhh-h-hheeecchhH------HH--HhcCCCcCCccccceEEeeccccCCCceEEEec-CC
Confidence            4566666554 3334443332 2 2245554421      11  011111001 1223455543     23444443 33


Q ss_pred             EEEEeCC-CCceeeeecCCC-----------CCC-----------CeEEEEEc----cCCCEEEEEecCCeEEEEECCCC
Q 006126          530 IDVYEAP-TLNHTSQLVPDK-----------MDL-----------PITYATYS----CDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       530 i~iwd~~-~~~~~~~~~~~~-----------~~~-----------~v~~~~~s----~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      .|+|... .|..+++....+           +..           .-..+.|.    -.+..+++-++-| |+|+|.++.
T Consensus       238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~  316 (726)
T KOG3621|consen  238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNS  316 (726)
T ss_pred             CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccc
Confidence            5677654 344444422110           000           00011111    1223344444444 899999887


Q ss_pred             eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      +...-...         ...  +..|+.   .++-|..--.||.+++..+.+.+
T Consensus       317 ~v~l~se~---------~~D--I~dVs~---~~neiFvL~~d~~l~~~sv~s~q  356 (726)
T KOG3621|consen  317 QVYLWSEG---------GHD--ILDVSH---CGNEIFVLNLDRGLKVESVASRQ  356 (726)
T ss_pred             eEEEeecC---------CCc--eeEEee---cCceEEEEecCCceeEEEeehhH
Confidence            66544321         122  335553   45556666677788888777654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00046  Score=74.53  Aligned_cols=204  Identities=12%  Similarity=0.111  Sum_probs=129.9

Q ss_pred             CeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-----eEEEEeCCCC---
Q 006126          378 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-----SILVHCPCTK---  446 (660)
Q Consensus       378 ~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~-----~I~iwd~~~~---  446 (660)
                      .+.|+.-++..++.|+ +|.|.+++-. .+.++.++.+...+...-+.-++  .|++.+.|+     .+++||++.-   
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            5665555578888888 9999888743 44557777777663233334444  666665554     5999998643   


Q ss_pred             ---cee--eEeec-----cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126          447 ---KTK--AKLKG-----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  516 (660)
Q Consensus       447 ---~~~--~~~~~-----~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  516 (660)
                         +++  +.+.+     ...++.+++.+.+-+.+|+|-.+|.|..+.-+--   +.+..+........  .+|+.+++.
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~---RDrgsr~~~~~~~~--~pITgL~~~  180 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL---RDRGSRQDYSHRGK--EPITGLALR  180 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch---hccccceeeeccCC--CCceeeEEe
Confidence               233  12222     3567889999999999999999999998843211   11111111111111  689999999


Q ss_pred             cCCcEE-EEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          517 PDQIHL-LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       517 p~~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      .+++.+ .++....|.+|.+. |+....-..+.|+.++.|.+|++....+++++ +..|++|+.....+-..+.
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            999884 34677889999997 44422221234688899999987655344443 3469999988655444443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.13  E-value=0.0025  Score=66.16  Aligned_cols=267  Identities=18%  Similarity=0.162  Sum_probs=144.9

Q ss_pred             ecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcE
Q 006126          320 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI  397 (660)
Q Consensus       320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I  397 (660)
                      |||+++++....  .-+.|...          ......++|..++.......   ....+....|+  |+.++...++.|
T Consensus         1 S~d~~~~l~~~~--~~~~~r~s----------~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~~nl   65 (353)
T PF00930_consen    1 SPDGKFVLFATN--YTKQWRHS----------FKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRDNNL   65 (353)
T ss_dssp             -TTSSEEEEEEE--EEEESSSE----------EEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEETTEE
T ss_pred             CCCCCeEEEEEC--cEEeeeec----------cceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEecCce
Confidence            688988877654  22223221          11223566777766554332   24567888999  899999999999


Q ss_pred             EEEECCCCeEEEEEc-CC----------------CCCeEEEEEcCCC-eEEEEeCC-C----------------------
Q 006126          398 SIFSLETFQTLATFA-NP----------------PPIATYFILLPQD-LFAFGFDD-S----------------------  436 (660)
Q Consensus       398 ~iwd~~~~~~~~~~~-~~----------------~~~v~~v~~sp~~-~l~s~~~d-~----------------------  436 (660)
                      .+++..++...+.-. +.                -..-..+.||||| .|+....| .                      
T Consensus        66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~  145 (353)
T PF00930_consen   66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES  145 (353)
T ss_dssp             EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE
T ss_pred             EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc
Confidence            999998775443221 20                1122467899999 66654322 1                      


Q ss_pred             -------------eEEEEeCCCCceee-E-e---eccCCCeEEEEEeCCCCEEEEEe--CCC---cEEEEEcCCCeeeec
Q 006126          437 -------------SILVHCPCTKKTKA-K-L---KGHQNRITCLAYSLSLNVLVSSG--ADA---QLCVWDAVGWKKLCS  493 (660)
Q Consensus       437 -------------~I~iwd~~~~~~~~-~-~---~~~~~~v~~l~~sp~~~~l~s~s--~dg---~i~vwd~~~~~~~~~  493 (660)
                                   .+.++|+.+++... . .   ......+..+.|.++++.++..-  .+.   .+.+.|..++.... 
T Consensus       146 ~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~-  224 (353)
T PF00930_consen  146 IRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV-  224 (353)
T ss_dssp             EE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-
T ss_pred             cccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-
Confidence                         23445555544321 1 1   12344577889999988444433  332   46677887754311 


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEe-cCCcEEEE-E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEE-EEEccCCCEEE-
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIY-  566 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~-  566 (660)
                       .......+.-   ..-....|. +++..++. + .+|  .|++++...+.. ..++.+  ...|.. +.++++++.|+ 
T Consensus       225 -~~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G--~~~V~~i~~~d~~~~~iyf  297 (353)
T PF00930_consen  225 -VLEETSDGWV---DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSG--DWEVTSILGWDEDNNRIYF  297 (353)
T ss_dssp             -EEEEESSSSS---SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-S--SS-EEEEEEEECTSSEEEE
T ss_pred             -EEEecCCcce---eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccC--ceeecccceEcCCCCEEEE
Confidence             1111111111   122255665 66666655 4 555  577778765553 344432  556755 77888887666 


Q ss_pred             EEecC----CeEEEEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          567 VSCKS----GHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       567 sg~~d----g~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ++..+    ..|+.-++. .+++ ..+...        ....+  .+.||| ++++++-.
T Consensus       298 ~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~--------~~~~~--~~~~Sp-dg~y~v~~  345 (353)
T PF00930_consen  298 TANGDNPGERHLYRVSLDSGGEP-KCLTCE--------DGDHY--SASFSP-DGKYYVDT  345 (353)
T ss_dssp             EESSGGTTSBEEEEEETTETTEE-EESSTT--------SSTTE--EEEE-T-TSSEEEEE
T ss_pred             EecCCCCCceEEEEEEeCCCCCe-EeccCC--------CCCce--EEEECC-CCCEEEEE
Confidence            44432    357777777 5544 444421        11113  799999 78876643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.13  E-value=0.00094  Score=69.77  Aligned_cols=93  Identities=18%  Similarity=0.256  Sum_probs=69.8

Q ss_pred             EEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126          530 IDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       530 i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      -.+|+....+.  +..... .....+.+++++|+.+.++.|+.||.|.+||...+.....            ...+.++.
T Consensus       238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------------ka~~~P~~  304 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------------KAEFIPTL  304 (545)
T ss_pred             EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------------eecccceE
Confidence            35566644332  222222 2478899999999999999999999999999987743322            22344668


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          608 IAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ++||| +|.++++|++-|.+.+||+.-+.
T Consensus       305 iaWHp-~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  305 IAWHP-DGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence            99999 89999999999999999987543

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=98.08  E-value=8.6e-06  Score=75.05  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             ccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc---------HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhH
Q 006126           63 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---------INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMF  133 (660)
Q Consensus        63 ~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~---------~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~  133 (660)
                      ..++|+++||+.||-..||.++|..+.+|+|+..+         -..++.+|..|+.++|...+.++.+.- -.-....+
T Consensus        24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei-Ld~n~~l~  102 (228)
T KOG2659|consen   24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI-LDTNRELF  102 (228)
T ss_pred             cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH-HccchhHH
Confidence            56899999999999999999999999999999872         567899999999999999998772210 01123345


Q ss_pred             HHHHHHHHHHHhhhc
Q 006126          134 SQIQRQKYLEAVDRQ  148 (660)
Q Consensus       134 ~~i~~q~~lell~~~  148 (660)
                      +.+++|+++|++..+
T Consensus       103 F~Lq~q~lIEliR~~  117 (228)
T KOG2659|consen  103 FHLQQLHLIELIREG  117 (228)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            669999999999988

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.08  E-value=3.7e-06  Score=87.13  Aligned_cols=249  Identities=14%  Similarity=0.126  Sum_probs=150.9

Q ss_pred             CCCCeEEEEEe---C-CEEEEEe-CCcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCC--eEEEEe----CCCeEEEE
Q 006126          375 PKDSISCFALR---G-SHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAFGF----DDSSILVH  441 (660)
Q Consensus       375 h~~~v~~v~~s---~-~~l~s~~-dg~I~iwd~~~~~~--~~~~~~~~~~v~~v~~sp~~--~l~s~~----~d~~I~iw  441 (660)
                      ....+.|+++.   . ..++.|. +|.|.+-.+.....  .....++....++++|++-+  .||+|-    .|..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            44567788877   3 3567777 89998887764322  22344677889999999976  676664    35589999


Q ss_pred             eCCCC--ceee--Eeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126          442 CPCTK--KTKA--KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  516 (660)
Q Consensus       442 d~~~~--~~~~--~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  516 (660)
                      |+.++  .+..  .|.+ ......+++|..+.+.+++|.....+.++|++.... ....+.      +   ..+..+...
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svn------T---k~vqG~tVd  204 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVN------T---KYVQGITVD  204 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhh------h---hhcccceec
Confidence            99876  2221  2222 334556888888889999999999999999985211 111111      1   246678888


Q ss_pred             c-CCcEEEEEecCcEEEEe-CCCC-ceeeeecCCC--CCCCeEEEEEccCCC-EEEEEec-CCeEEEEECCCC------e
Q 006126          517 P-DQIHLLSIHEGQIDVYE-APTL-NHTSQLVPDK--MDLPITYATYSCDGK-CIYVSCK-SGHVKVFDTSTL------E  583 (660)
Q Consensus       517 p-~~~~l~~~~d~~i~iwd-~~~~-~~~~~~~~~~--~~~~v~~~~~s~dg~-~l~sg~~-dg~I~iwd~~~~------~  583 (660)
                      | .+.|+++..||.|.+|| .++- .++..+....  ....+..++|+|... .+++... .++|+.+|+..-      +
T Consensus       205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~n  284 (783)
T KOG1008|consen  205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSAN  284 (783)
T ss_pred             CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccc
Confidence            8 78889887899999999 3332 2333332211  123488999998643 4444444 488999997531      1


Q ss_pred             eEEEeecccccCCCCcCcccceEEEEEecCC-CCEEEEEeCCCeEEEEeCC
Q 006126          584 LRCQINLTAYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d-~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ....+......+..|.+..-.+.++.||+.+ -+...++-..-++.-+++.
T Consensus       285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~  335 (783)
T KOG1008|consen  285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH  335 (783)
T ss_pred             ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence            1111111110011222211223388999855 2345555555555555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.07  E-value=0.0019  Score=68.17  Aligned_cols=219  Identities=16%  Similarity=0.163  Sum_probs=117.9

Q ss_pred             CeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeecc
Q 006126          378 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH  455 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~  455 (660)
                      ....+.++  |++++.++||...++.....+....-     ....++|.+.+.+|+-...+.|.++.--+.+....+.. 
T Consensus        34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G-----~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-  107 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG-----SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-  107 (443)
T ss_dssp             --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE-----E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------
T ss_pred             CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC-----ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-
Confidence            35677787  88888888999999986555443322     23367898866777777788999964323333233332 


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  535 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~  535 (660)
                      ...+..+ |.  |..|...+.+ .|.+||..+++.++...+.           .|..+.|+++|.+++...+..+.+++.
T Consensus       108 ~~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-----------~vk~V~Ws~~g~~val~t~~~i~il~~  172 (443)
T PF04053_consen  108 PFSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS-----------AVKYVIWSDDGELVALVTKDSIYILKY  172 (443)
T ss_dssp             SS-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS------------E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred             CcccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEecC-----------CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence            1234444 22  7777776644 8999999997655443332           478999999999999976778888876


Q ss_pred             CCC-----------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126          536 PTL-----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       536 ~~~-----------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                      ...           ..+..+..  -...|.+.+|..| -++++. .. .|+-  +-.|+.-..-.         -+.+++
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~---------ld~~~y  236 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAH---------LDKPLY  236 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE----------SS--E
T ss_pred             cchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEE---------cCCceE
Confidence            433           01222211  1567888888765 333333 33 6655  44444322211         145677


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                        -+.+.| ..+.+.....|+.|..+.+...+
T Consensus       237 --llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  237 --LLGYLP-KENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             --EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred             --EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence              456667 56788888899999999887554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.05  E-value=0.0018  Score=67.39  Aligned_cols=271  Identities=11%  Similarity=0.115  Sum_probs=139.9

Q ss_pred             CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEE
Q 006126          313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA  392 (660)
Q Consensus       313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~  392 (660)
                      .|.++.|+++..-|+.|...|.|.||.+..++....    .....-.|.....+       .|.                
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~----~~~~~~~~~~~~~~-------~~~----------------   55 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN----REQPPDLDYNFRRF-------SLN----------------   55 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S---------GG----------------
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc----cCCCcccCcccccc-------ccc----------------
Confidence            588999999988899999999999999876643110    00000000000000       000                


Q ss_pred             eCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe--ec------c
Q 006126          393 SGGKISIFSLET---------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KG------H  455 (660)
Q Consensus       393 ~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~------~  455 (660)
                       ++.-.+-|+..         ..+..-+....+.|++++.|.-|.++.|..+|.+.|.|++....+..-  ..      .
T Consensus        56 -~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~  134 (395)
T PF08596_consen   56 -NSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSS  134 (395)
T ss_dssp             -GSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-
T ss_pred             -CCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccccccccc
Confidence             00111222211         123333445578999999987779999999999999999877666542  11      2


Q ss_pred             CCCeEEEEEeC-----CC---CEEEEEeCCCcEEEEEcCC-Cee-eeceeeeeeeeccCCCCCCeEEEE-EecC------
Q 006126          456 QNRITCLAYSL-----SL---NVLVSSGADAQLCVWDAVG-WKK-LCSKFLHSFQTGLVPETTIVNHIQ-FHPD------  518 (660)
Q Consensus       456 ~~~v~~l~~sp-----~~---~~l~s~s~dg~i~vwd~~~-~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~sp~------  518 (660)
                      ...|+++.|.-     |+   -.+++|+..|.+.+|.+.- ... ....... ....+.   +.|..+. |+.+      
T Consensus       135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~-~~~~~~---~~i~~I~~i~~~~G~~a~  210 (395)
T PF08596_consen  135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG-ATTNHD---SPILSIIPINADTGESAL  210 (395)
T ss_dssp             ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE-EE--SS-------EEEEEETTT--B-B
T ss_pred             ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee-ccccCC---CceEEEEEEECCCCCccc
Confidence            34678888852     33   3688899999999998752 111 1111111 111222   3555544 3221      


Q ss_pred             ---------------CcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE-----ccCCCEEEEEecCCeEEEEE
Q 006126          519 ---------------QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-----SCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       519 ---------------~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-----s~dg~~l~sg~~dg~I~iwd  578 (660)
                                     ..+++++.+..++++...+.+.......  .......+++     ...+..|++-..+|.|++|.
T Consensus       211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S  288 (395)
T PF08596_consen  211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS  288 (395)
T ss_dssp             -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred             CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence                           1245557888999999988877655531  1233334455     23567888888999999999


Q ss_pred             CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          579 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                      +..-+.+..........    .....  ..++++ +|+.++-.|..
T Consensus       289 LP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~gps  327 (395)
T PF08596_consen  289 LPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTGPS  327 (395)
T ss_dssp             TTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-SSS
T ss_pred             CCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeCcc
Confidence            99988887776531100    11122  456677 78877766544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.05  E-value=0.012  Score=55.26  Aligned_cols=308  Identities=11%  Similarity=0.071  Sum_probs=152.7

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      .+++.|+..+.+.--|...    +.+.--..    -..+|.+-+.- -|++++.|...|.+.+-+.+++..         
T Consensus        24 T~v~igSHs~~~~avd~~s----G~~~We~i----lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~---------   85 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQS----GNLIWEAI----LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ---------   85 (354)
T ss_pred             eEEEEecCCceEEEecCCC----CcEEeehh----hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh---------
Confidence            3555666666666666653    32221111    13344443333 577899999999999888887753         


Q ss_pred             eEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CCeEEEE
Q 006126          355 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QDLFAFG  432 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~~l~s~  432 (660)
                         .|+-..-..+         ..-..+++++..+..|+ |++....|..+..++...+.......+-+..| ++.|..+
T Consensus        86 ---~w~f~~~~~v---------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen   86 ---IWNFVILETV---------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             ---eeeeeehhhh---------ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence               4542211111         11112344488899999 99999999999999988776555555556667 3455555


Q ss_pred             eCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeee-eeeeccCCCC
Q 006126          433 FDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPET  507 (660)
Q Consensus       433 ~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~  507 (660)
                      ...|.+.--..+++.. .++-.|  .++|.+   +|  -+..+..+..||.+.-+| ..|+.+...... .++.+...  
T Consensus       154 ~t~G~vlavt~~~~~~-~~~w~~~~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~--  226 (354)
T KOG4649|consen  154 ITAGAVLAVTKNPYSS-TEFWAATRFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCE--  226 (354)
T ss_pred             eccceEEEEccCCCCc-ceehhhhcCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceeccccc--
Confidence            6666655555544421 112111  122221   11  133444555566666555 333222110000 00000000  


Q ss_pred             C--CeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cC---CCEEEEEecCCeEEEEE---
Q 006126          508 T--IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CD---GKCIYVSCKSGHVKVFD---  578 (660)
Q Consensus       508 ~--~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d---g~~l~sg~~dg~I~iwd---  578 (660)
                      +  ....+.+-.++-+.+...-..--+|..++|.....+....     ....++ |.   .++|..++.||++.|--   
T Consensus       227 s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~  301 (354)
T KOG4649|consen  227 SRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSSGDGKVMILMTSK  301 (354)
T ss_pred             CCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhcCCCcEEEEEecc
Confidence            0  0012222222222222211223467766665544443211     122222 22   35677888899998873   


Q ss_pred             ------CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          579 ------TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       579 ------~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                            -+.+++....... .      .+.+...-+..   +| +|+.|+.|..|+-||+.+.
T Consensus       302 sl~~~~s~~g~lq~~~~~e-l------~~eIFsSPvii---~g-rl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  302 SLAEISSNGGELQNLEAIE-L------SNEIFSSPVII---DG-RLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             cccccccCCCccceEEEee-c------CcccccCCeEE---cc-EEEEEEccCeEEEEecccc
Confidence                  3334332221100 0      11121111111   33 5778889999999999764

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.03  E-value=4.9e-06  Score=53.28  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.9

Q ss_pred             cHHHHHHHHHHhhchhhHHHHHHHHhhhcccc
Q 006126           64 TKEELIYLIHQFLNEEEFKETLHKLEQETRVF   95 (660)
Q Consensus        64 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~   95 (660)
                      .++++.++|+|||.+.||..||.+|++|+++.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            47899999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.03  E-value=1.8e-06  Score=89.39  Aligned_cols=204  Identities=14%  Similarity=0.128  Sum_probs=132.5

Q ss_pred             CCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeC-CCCEEEEEe----CCCcEEEEEc
Q 006126          416 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSL-SLNVLVSSG----ADAQLCVWDA  485 (660)
Q Consensus       416 ~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp-~~~~l~s~s----~dg~i~vwd~  485 (660)
                      ..+.|++++-+.   .+++|..+|.|.+-.++....  -....+|....++++|++ |.+.|++|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            345566665543   788999999999988765432  233456788899999998 556677663    2567999999


Q ss_pred             CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEcc-CC
Q 006126          486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSC-DG  562 (660)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-dg  562 (660)
                      .++-........ +..+..   ....+++|..+.+.+.+| ....++++|++. ......+    ....+..+..+| .+
T Consensus       137 ~s~ltvPke~~~-fs~~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  137 NSLLTVPKESPL-FSSSTL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSP  208 (783)
T ss_pred             ccccCCCccccc-cccccc---cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCC
Confidence            885222222222 112222   456689999888888886 667999999972 2222222    144566788888 77


Q ss_pred             CEEEEEecCCeEEEEEC-CCCe-eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEEeCCC
Q 006126          563 KCIYVSCKSGHVKVFDT-STLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLE  634 (660)
Q Consensus       563 ~~l~sg~~dg~I~iwd~-~~~~-~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw~~~~  634 (660)
                      .++++.. ||.|.+||. .+-+ ++..+. +     .....+-....++|.|+....+++.+.| ++|+.+++..
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~-~-----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIIL-R-----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHh-h-----CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            8887776 999999994 2211 111111 0     0001112245899999877788888876 7899999864

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.02  E-value=0.011  Score=60.01  Aligned_cols=280  Identities=15%  Similarity=0.104  Sum_probs=132.6

Q ss_pred             EEEecCCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe
Q 006126          317 LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS  393 (660)
Q Consensus       317 ~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~  393 (660)
                      =+|.+||+.|+.++. ||.-.+|                   +.|..+++..+.+-  +.........++  ++.++-..
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly-------------------~lDL~t~~i~QLTd--g~g~~~~g~~~s~~~~~~~Yv~   99 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLY-------------------LLDLATGEITQLTD--GPGDNTFGGFLSPDDRALYYVK   99 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEE-------------------EEETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceE-------------------EEEcccCEEEECcc--CCCCCccceEEecCCCeEEEEE
Confidence            467889977776665 6655444                   33445555554332  111111123333  56665555


Q ss_pred             -CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc--CCCeEEEEeC-----------------------CCeEEEEeCCCCc
Q 006126          394 -GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGFD-----------------------DSSILVHCPCTKK  447 (660)
Q Consensus       394 -dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s--p~~~l~s~~~-----------------------d~~I~iwd~~~~~  447 (660)
                       +..|+..|+.+.+....+..+...+-...|.  .|+..++|..                       ...|...|+.+|+
T Consensus       100 ~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~  179 (386)
T PF14583_consen  100 NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE  179 (386)
T ss_dssp             TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred             CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence             5688899999988766666666666556664  3342232211                       1356667888887


Q ss_pred             eeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                      ....+. ....+..+.|+|....+++=+..|     .-|||-+++.... ..++.....+     ..+..=-|.|||..|
T Consensus       180 ~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~-----e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  180 RKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEG-----ESVGHEFWVPDGSTI  252 (386)
T ss_dssp             EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT-----EEEEEEEE-TTSS-E
T ss_pred             eeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCC-----cccccccccCCCCEE
Confidence            655554 456778899999554444433222     1255655442111 1222211111     345556789999988


Q ss_pred             EE-Ee-----cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC----------------CeEEEEECC
Q 006126          523 LS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----------------GHVKVFDTS  580 (660)
Q Consensus       523 ~~-~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----------------g~I~iwd~~  580 (660)
                      .. +.     +..|.-+|+.+++......    .......-.++||++++-=+.|                -.|+++++.
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~  328 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE  328 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred             EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence            76 42     3357778888876543332    2235566677999988753333                157788888


Q ss_pred             CCeeEEEeeccc---ccCCCCcCcccceEEEEEecCCCCEEE-EEeCCCeEEEEeC
Q 006126          581 TLELRCQINLTA---YAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEP  632 (660)
Q Consensus       581 ~~~~~~~~~~~~---~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s~Dg~v~iw~~  632 (660)
                      .+..... ..|.   ....|+..  +.=-.+.|+| |+++++ ++...|...||-+
T Consensus       329 ~~~~~~l-~~h~~sw~v~~~~~q--~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  329 AGRFRKL-ARHDTSWKVLDGDRQ--VTHPHPSFSP-DGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             TTEEEEE-EE-------BTTBSS--TT----EE-T-TSSEEEEEE-TTSS-EEEEE
T ss_pred             cCceeee-eeccCcceeecCCCc--cCCCCCccCC-CCCEEEEECCCCCCccEEEE
Confidence            7765432 2221   12223211  1112689999 777765 4556677777654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.0047  Score=61.84  Aligned_cols=185  Identities=14%  Similarity=0.091  Sum_probs=112.6

Q ss_pred             CCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcCCCeEEEEeCC------------Ce
Q 006126          377 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQDLFAFGFDD------------SS  437 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~~sp~~~l~s~~~d------------~~  437 (660)
                      ..+.++..-  +..|+++. .-+.+++.+++..+..+..     .....+.+...|+|.+..++..            |.
T Consensus        66 ~~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~  144 (307)
T COG3386          66 GGFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS  144 (307)
T ss_pred             CCcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence            334444444  44555444 3455666666655333321     1234567888999933333333            34


Q ss_pred             EEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcCC--CeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126          438 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQ  514 (660)
Q Consensus       438 I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~  514 (660)
                      ++.+|. .+..++.+..+-..-+.++||||++.|..+... +.|.-|++..  +.........  .....+  +..-.++
T Consensus       145 lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~--~~~~~~--G~PDG~~  219 (307)
T COG3386         145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV--DFDEEP--GLPDGMA  219 (307)
T ss_pred             EEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE--EccCCC--CCCCceE
Confidence            566665 466666666666677899999999887776654 7888887763  2221111111  111111  4556788


Q ss_pred             EecCCcEEEEE-ec-CcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEec
Q 006126          515 FHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK  570 (660)
Q Consensus       515 ~sp~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~  570 (660)
                      ...+|.+.+++ .+ +.|.+|+.. ++.+..+..+  ...+++++|- |+.+.|+..+.
T Consensus       220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEec
Confidence            88899888664 33 389999997 9999888764  4778888886 56666554443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.91  E-value=0.0007  Score=71.08  Aligned_cols=178  Identities=16%  Similarity=0.141  Sum_probs=110.6

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEE---eCC-CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG---FDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~---~~d-~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  470 (660)
                      .+.+-|-. |...+.+......+..-.|+|++ .++.-   ... ..++++|+.+++....+. ..+.-....|+|||+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            45555544 55556666566667778999999 43322   222 469999999887655443 2333345579999998


Q ss_pred             EEEEe-CCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecC--cEEEEeCCCCceeee
Q 006126          471 LVSSG-ADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ  543 (660)
Q Consensus       471 l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~--~i~iwd~~~~~~~~~  543 (660)
                      |+... .||  .|.++|+.++..      ..+..+.    +.-..-.|+|||++++..  ..|  .|.++|.+.+.. ..
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~------~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~r  320 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNL------PRLTNGF----GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TR  320 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcc------eecccCC----ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eE
Confidence            77654 455  477778877441      1111111    223367899999999983  333  588888865554 44


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEec-CCe--EEEEECCCCeeEEEe
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLELRCQI  588 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~--I~iwd~~~~~~~~~~  588 (660)
                      +...  ...-..-.|+|||++++..+. +|.  |.+.|+.++.....+
T Consensus       321 iT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         321 LTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             eecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence            4332  222227789999999987664 344  777777776643333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.0002  Score=76.78  Aligned_cols=100  Identities=23%  Similarity=0.293  Sum_probs=77.6

Q ss_pred             CCEEEEEe-----CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          386 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       386 ~~~l~s~~-----dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                      ..++++++     .|.|.||- ++|++.+... .+-.+++++|+|.. .|+.|-.-|.+.+|...+.+.-.....|..+|
T Consensus        27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i  104 (1416)
T KOG3617|consen   27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI  104 (1416)
T ss_pred             CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence            34555544     37777774 4555443332 22345679999999 99999999999999988776666667799999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~  487 (660)
                      ..+.|||+|..++++..-|.+.+|....
T Consensus       105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  105 QGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            9999999999999999999999998763

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.90  E-value=0.012  Score=60.95  Aligned_cols=242  Identities=13%  Similarity=0.070  Sum_probs=133.4

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCC--------------CCCeEEEEEecCCCEEEEEECC
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF--------------GGRVVRLIYSHSGDFLVALTQT  332 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h--------------~~~V~~~~~spdg~~l~s~s~d  332 (660)
                      ...|||||+.+|.... +.+.+++..+    +...+++..+..+              -+.-..+.|||||++||....|
T Consensus        47 ~~~~sP~g~~~~~v~~-~nly~~~~~~----~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   47 DAKWSPDGKYIAFVRD-NNLYLRDLAT----GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             EEEE-SSSTEEEEEET-TEEEEESSTT----SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cceeecCCCeeEEEec-CceEEEECCC----CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            3499999999998864 7899998764    4555544333100              1123568899999999998775


Q ss_pred             -CcEEEEe---ccCCce---eee--------eeccceeEEEecCCCCceeeeccc---CCCCCCeEEEEEe--CCEEEEE
Q 006126          333 -ATHKLWK---WQSNKQ---SLE--------EENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSA  392 (660)
Q Consensus       333 -g~i~vw~---~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s--~~~l~s~  392 (660)
                       ..+..+.   ......   ...        .......+.+++..++........   ......+..+.|.  +..|+..
T Consensus       122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~  201 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ  201 (353)
T ss_dssp             -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred             CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence             4444333   323221   111        122445667889888875432221   1245568889998  4424443


Q ss_pred             e---C---CcEEEEECCCCeEEEEEc-CCCCC---eEEEEEc-CCC--eEEEEeCCC--eEEEEeCCCCceeeEeeccCC
Q 006126          393 S---G---GKISIFSLETFQTLATFA-NPPPI---ATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQN  457 (660)
Q Consensus       393 ~---d---g~I~iwd~~~~~~~~~~~-~~~~~---v~~v~~s-p~~--~l~s~~~d~--~I~iwd~~~~~~~~~~~~~~~  457 (660)
                      -   +   -.+.+.|..++....... .....   .....+. +++  .+.....||  .|++++...+. ...+....-
T Consensus       202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~  280 (353)
T PF00930_consen  202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW  280 (353)
T ss_dssp             EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS
T ss_pred             EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce
Confidence            3   2   247777887766543333 12222   2355554 666  555555777  57777777655 445554556


Q ss_pred             CeEE-EEEeCCCCEEEE-EeCC----CcEEEEEcC-CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          458 RITC-LAYSLSLNVLVS-SGAD----AQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       458 ~v~~-l~~sp~~~~l~s-~s~d----g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      .|.. +.|+++++.+.. +..+    ..+..-++. .+..   .++.    ...   ..-..+.|||+|++++.
T Consensus       281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT----~~~---~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLT----CED---GDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESS----TTS---STTEEEEE-TTSSEEEE
T ss_pred             eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---Eecc----CCC---CCceEEEECCCCCEEEE
Confidence            6744 678888776654 4432    245555666 4332   1111    111   12258999999999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.88  E-value=0.018  Score=60.70  Aligned_cols=182  Identities=15%  Similarity=0.078  Sum_probs=100.9

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe-------eccCCCeEEEEEeCCC
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSL  468 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~  468 (660)
                      .|.+|+.. |+.+.++.-..+.+.++.|+.+..|++-..||.+++||+. |+....+       .-....+....+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            58888875 6677776644488999999887667777899999999986 3331111       1111222233333355


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec----cCCCCCCeEE-EEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126          469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG----LVPETTIVNH-IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~-~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~  542 (660)
                        ++.-..++.+.+..--..... ...+...+..    +..  ..... ..++.+....+. ..++.+.+.+-...+.  
T Consensus       140 --ivvLt~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~--~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--  212 (410)
T PF04841_consen  140 --IVVLTGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWW--PSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--  212 (410)
T ss_pred             --EEEECCCCeEEEEeCccccch-hhccccCCCcccccccc--cccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence              333334555444422221100 0001001110    000  01111 234444444444 4555666554332211  


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                       +.   ..+++..+++||+|+++|.-..+|.+.|....-.+....+..
T Consensus       213 -i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  213 -ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             -cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence             21   257899999999999999999999999998776666666553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.85  E-value=0.00089  Score=71.98  Aligned_cols=105  Identities=7%  Similarity=-0.061  Sum_probs=76.3

Q ss_pred             EEEEEecCCCEEEEEEC----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC-E
Q 006126          315 VRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-H  388 (660)
Q Consensus       315 ~~~~~spdg~~l~s~s~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~-~  388 (660)
                      +-..|+|...+++.++.    .|+|.||-                      .+|+.-+..   ...-.+++++|+ .+ .
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa----------------------dtGEPqr~V---t~P~hatSLCWHpe~~v   73 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA----------------------DTGEPQRDV---TYPVHATSLCWHPEEFV   73 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe----------------------cCCCCCccc---ccceehhhhccChHHHH
Confidence            44678999998888775    36676653                      222221111   122235678999 44 4


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~  444 (660)
                      |+.|- -|.+.+|...+.+.......|+.+|..+.|||+| .++++..-|.|.+|...
T Consensus        74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            55555 6999999998877766667899999999999999 99999999999999765

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.84  E-value=0.0025  Score=68.39  Aligned_cols=181  Identities=11%  Similarity=0.012  Sum_probs=109.2

Q ss_pred             EecCCCCEEEEE-eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC----cEEEEeccCC
Q 006126          269 TSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----THKLWKWQSN  343 (660)
Q Consensus       269 ~~spdg~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg----~i~vw~~~~~  343 (660)
                      =++|||+.+... ...+.+.+.|.++   .....++.+     .+....++++|+|+++++.+.+.    ++..-+....
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~et---meV~~qV~V-----dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~  270 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAET---MEVAWQVMV-----DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER  270 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECcc---ceEEEEEEe-----CCCcccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence            567899876443 3457788888874   233334333     33556789999999998886432    1211111000


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCC----C-eEEEEEcCCCC
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET----F-QTLATFANPPP  416 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~----~-~~~~~~~~~~~  416 (660)
                      .          ....++...               +.  ++.  |++... .++.|.+.|..+    + +.+..+. -..
T Consensus       271 d----------~~vvfni~~---------------ie--a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGK  321 (635)
T PRK02888        271 D----------WVVVFNIAR---------------IE--EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPK  321 (635)
T ss_pred             c----------eEEEEchHH---------------HH--HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCC
Confidence            0          001111110               00  011  444333 467899999988    3 4444443 444


Q ss_pred             CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce------------eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126          417 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKT------------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  482 (660)
Q Consensus       417 ~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v  482 (660)
                      ....+.++|||  .++++..+.+|.|.|+.+.+.            .....--.+ ....+|.++|+...+...|..|..
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEE
Confidence            56689999999  555666789999999987542            222222222 334579999998888899999999


Q ss_pred             EEcCC
Q 006126          483 WDAVG  487 (660)
Q Consensus       483 wd~~~  487 (660)
                      ||+..
T Consensus       401 wn~~~  405 (635)
T PRK02888        401 WNIEA  405 (635)
T ss_pred             EehHH
Confidence            99976

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.79  E-value=0.051  Score=55.21  Aligned_cols=255  Identities=14%  Similarity=0.109  Sum_probs=123.1

Q ss_pred             ecCCCCceeeecccC-C--CCCCeEEEEEe--CCEEEEEe--CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e
Q 006126          359 YQPSSKLVMTNDIAA-D--PKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-L  428 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~-~--h~~~v~~v~~s--~~~l~s~~--dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~  428 (660)
                      -|+.+|..+..+... +  |.-..+.=+|.  |+.|+.++  +|  .+.+.|+.+++..+--.+.........++|++ .
T Consensus        15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~   94 (386)
T PF14583_consen   15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA   94 (386)
T ss_dssp             E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred             eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence            366777655444311 0  11111222444  66665555  54  68888999988776555432322245677888 6


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe--CCCCEEEEEeC----------------------CCcEEEEE
Q 006126          429 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--LSLNVLVSSGA----------------------DAQLCVWD  484 (660)
Q Consensus       429 l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s--p~~~~l~s~s~----------------------dg~i~vwd  484 (660)
                      ++-......++-.|+++.+....+......+-...|.  .|+..++-.-.                      ...|...|
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            6555566789999999987766666566655545553  45666543211                      12455667


Q ss_pred             cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecC-------cEEEEeCCCCceeeeecCCCCCCCeEEE
Q 006126          485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYA  556 (660)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~  556 (660)
                      +++|+..   .   +....    .++..+.|+|....+++ |..|       .|.+.+. .+.....+........+..=
T Consensus       175 l~tG~~~---~---v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  175 LKTGERK---V---VFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             TTT--EE---E---EEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEE
T ss_pred             CCCCcee---E---EEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccc
Confidence            7775531   1   22222    47889999997776666 7543       3444454 23333333322223445556


Q ss_pred             EEccCCCEEEEEe-----cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC------
Q 006126          557 TYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG------  625 (660)
Q Consensus       557 ~~s~dg~~l~sg~-----~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg------  625 (660)
                      -|.|||..|.--+     .+..|.-+|+.+++........            ++..+--++ ||.++|-=|.|.      
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p------------~~~H~~ss~-Dg~L~vGDG~d~p~~v~~  310 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP------------WCSHFMSSP-DGKLFVGDGGDAPVDVAD  310 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------------SEEEEEE-T-TSSEEEEEE---------
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC------------ceeeeEEcC-CCCEEEecCCCCCccccc
Confidence            7899998766422     2446778899988765433211            122455567 788877655542      


Q ss_pred             ----------eEEEEeCCCCce
Q 006126          626 ----------RVHVIEPLESEV  637 (660)
Q Consensus       626 ----------~v~iw~~~~~~~  637 (660)
                                -|+++++..++.
T Consensus       311 ~~~~~~~~~p~i~~~~~~~~~~  332 (386)
T PF14583_consen  311 AGGYKIENDPWIYLFDVEAGRF  332 (386)
T ss_dssp             ----------EEEEEETTTTEE
T ss_pred             cccceecCCcEEEEeccccCce
Confidence                      566777776653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.78  E-value=0.00095  Score=70.12  Aligned_cols=166  Identities=17%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             CceeeEeeccCCCeEEEEEeCCCCEEEEEe---CC-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126          446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG---AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  521 (660)
Q Consensus       446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  521 (660)
                      |.....+......+..-.|+|++..++..+   .. ..+.++|+.++....   +- ...+      .-...+|+|||+.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~---i~-~~~g------~~~~P~fspDG~~  251 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV---IL-NFNG------NNGAPAFSPDGSK  251 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---ee-ccCC------ccCCccCCCCCCE
Confidence            444444444455666678999998766543   22 358999999865321   11 1222      3346789999999


Q ss_pred             EEEE--ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEECCCCeeEEEeeccccc
Q 006126          522 LLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYA  594 (660)
Q Consensus       522 l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~  594 (660)
                      |+.+  .|+  .|+++|+..+...+ +...  .+.-+.-.|+|||++++..+.. |  .|++++.+.+.. ..+...   
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~---  324 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPR-LTNG--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS---  324 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCccee-cccC--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc---
Confidence            9984  454  58888997766433 4321  3333477899999999876653 4  477778777765 333321   


Q ss_pred             CCCCcCcccceEEEEEecCCCCEEEEEeCC-Ce--EEEEeCCCCc
Q 006126          595 QPGTISLELYPLVIAAHPLEPNRIALGLTN-GR--VHVIEPLESE  636 (660)
Q Consensus       595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~--v~iw~~~~~~  636 (660)
                        +  .. -.  .-.|+| ||++++..+.. |.  |.+.++.++.
T Consensus       325 --~--~~-~~--~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         325 --G--GG-NS--NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             --C--CC-Cc--CccCCC-CCCEEEEEeccCCceeeEEeccCCCC
Confidence              1  11 11  578999 89998887743 44  6667776655

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.74  E-value=0.035  Score=58.54  Aligned_cols=186  Identities=13%  Similarity=0.113  Sum_probs=97.7

Q ss_pred             EEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEE-------cCCCCCeEEEEEcCC
Q 006126          356 SQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-------ANPPPIATYFILLPQ  426 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~-------~~~~~~v~~v~~sp~  426 (660)
                      +.+|+..+..+-+...  .+ +.+.++.|+ ...|+... ||.+++||+. |+....+       .-....+....+..+
T Consensus        63 I~iys~sG~ll~~i~w--~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   63 IQIYSSSGKLLSSIPW--DS-GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEECCCCCEeEEEEE--CC-CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence            4566654443333222  13 789999999 66666555 9999999986 3331111       111122223344446


Q ss_pred             C-eEEEEeCCCeEEEEeCCCCc-eeeEee---c-----cCC-CeEE-EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126          427 D-LFAFGFDDSSILVHCPCTKK-TKAKLK---G-----HQN-RITC-LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       427 ~-~l~s~~~d~~I~iwd~~~~~-~~~~~~---~-----~~~-~v~~-l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~  494 (660)
                      | .+++  .++.+.+..-.... ..+.+.   +     +.. .... ..++.+....+....++.+.+.+-....     
T Consensus       139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~-----  211 (410)
T PF04841_consen  139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK-----  211 (410)
T ss_pred             CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc-----
Confidence            6 4444  34444444322211 111111   0     000 0000 2244445555555555556544433310     


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      .+    ..+    +++..|++||+|+++|. ..+|.+.+.+..-.+....+... .......+.|.-+
T Consensus       212 ~i----~~~----~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~  270 (410)
T PF04841_consen  212 QI----DSD----GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGN  270 (410)
T ss_pred             cc----cCC----CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECC
Confidence            11    111    47999999999999998 67899999887655555555442 2345667777654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.73  E-value=0.012  Score=56.60  Aligned_cols=199  Identities=13%  Similarity=0.027  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCC-eEEEEEcCCC-eEEEEeCCC--eEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126          407 TLATFANPPPI-ATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLC  481 (660)
Q Consensus       407 ~~~~~~~~~~~-v~~v~~sp~~-~l~s~~~d~--~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~  481 (660)
                      .+.++...... ...+.|..+| .+-+.+.-|  .|+.+|+.+|+......-. ...--.++... ++...-.=.++...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence            44444433333 3467787888 777777666  7999999999877655422 12222444443 33444445688999


Q ss_pred             EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCC---CeEEEE
Q 006126          482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL---PITYAT  557 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~  557 (660)
                      +||..+.+.+......          +.-..++  .|+..|+.+ ....++++|..+.+...++.......   .++-+.
T Consensus       114 ~yd~~tl~~~~~~~y~----------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE  181 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYP----------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE  181 (264)
T ss_dssp             EEETTTTEEEEEEE-S----------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred             EEccccceEEEEEecC----------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence            9999986655443332          2334555  566677765 66789999999888877766543333   345566


Q ss_pred             EccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC----CCc---CcccceEEEEEecCCCCEEEEE
Q 006126          558 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----GTI---SLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       558 ~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~----gh~---~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      |- +|...|-.-....|...|..+|+....+......+.    ...   .+..  +.++|.|..+.+++||
T Consensus       182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL--NGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL--NGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E--EEEEEETTTTEEEEEE
T ss_pred             EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee--EeEeEeCCCCEEEEEe
Confidence            64 666666555667899999999999998876543321    100   2223  4999999666666776

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.00051  Score=72.71  Aligned_cols=203  Identities=13%  Similarity=0.077  Sum_probs=120.2

Q ss_pred             CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126          375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK  449 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~  449 (660)
                      +...|.--+++  +++++.|+ .|.+.+|+-..++....-. +....+.....+++. ++|.|+..|.|.++-+..+..-
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44444444444  89999999 7999999988766543322 344455667788888 9999999999999988764321


Q ss_pred             -----eEe-eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          450 -----AKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       450 -----~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                           ... ..|...|+++.|++|+..+.+|...|+|..-.+.+. .......+.+....    +.|..+...  ..+|+
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~d----s~IVQlD~~--q~~LL  184 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSED----SEIVQLDYL--QSYLL  184 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccC----cceEEeecc--cceeh
Confidence                 111 237889999999999999999999999998888762 11111222122111    456555554  33444


Q ss_pred             EEecCcEEEEeCCCCceeeeecCCCCCC-CeEEEEEccC-----CCEEEEEecCCeEEEEECCC-CeeEEE
Q 006126          524 SIHEGQIDVYEAPTLNHTSQLVPDKMDL-PITYATYSCD-----GKCIYVSCKSGHVKVFDTST-LELRCQ  587 (660)
Q Consensus       524 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~d-----g~~l~sg~~dg~I~iwd~~~-~~~~~~  587 (660)
                      ++.--.-.+++++.+. +..+-.....+ .-...+|-|.     ...|+++ .-| .|+|..+- |+.+.+
T Consensus       185 VStl~r~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-RPG-~RlWead~~G~V~~T  252 (726)
T KOG3621|consen  185 VSTLTRCILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-RPG-LRLWEADFAGEVIKT  252 (726)
T ss_pred             HhhhhhhheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEe-cCC-CceEEeecceeEEEe
Confidence            4332333456665433 22221111111 1334566543     2345544 433 67787652 444433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.70  E-value=0.037  Score=53.48  Aligned_cols=198  Identities=16%  Similarity=0.093  Sum_probs=110.8

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126          374 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK  447 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~  447 (660)
                      +-...+..++|.  .+.|++..  .+.|..++. +|+.++.+.-. ....-.+++..++ ++++.-.++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            344569999999  56666666  578888886 48888887633 4567788998888 66666568999999884321


Q ss_pred             ------eeeEee-----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---Ceeeeceeeeeee--eccCCCCCCeE
Q 006126          448 ------TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQ--TGLVPETTIVN  511 (660)
Q Consensus       448 ------~~~~~~-----~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~--~~~~~~~~~v~  511 (660)
                            ....+.     .++..+-.++|+|.++.|+.+-...-..+|.++.   .............  ....   ..+.
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~S  174 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV---RDLS  174 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S---S---
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee---cccc
Confidence                  112221     2445688999999888888877776666776654   1111000000001  0111   3578


Q ss_pred             EEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC--C-----CCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          512 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       512 ~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                      +++++|....+++ + .+..|..+| .+|+.+..+....  |     -...-.++|+++|++.++ ++-+..++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            8999997655555 6 667899999 5788766654321  1     235778999999865544 467777765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.66  E-value=0.045  Score=52.92  Aligned_cols=213  Identities=13%  Similarity=0.035  Sum_probs=112.9

Q ss_pred             EEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126          410 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAV  486 (660)
Q Consensus       410 ~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~  486 (660)
                      .+.+-...+..++|+|+.  ++++....+.|..++. +|+.++++.-. -+..-.|++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455566679999999986  7777778889998996 47888777543 3567889998888777766568999999984


Q ss_pred             CCee-eeceeeeee----eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---Cceeee-----ec-CCCCCC
Q 006126          487 GWKK-LCSKFLHSF----QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQ-----LV-PDKMDL  551 (660)
Q Consensus       487 ~~~~-~~~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~---~~~~~~-----~~-~~~~~~  551 (660)
                      .... ......+.+    ...+.   ..+-.++|+|.+..|++. ...-..+|.+..   ...+..     +. ......
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N---~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGN---KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             ---TT--EEEEEEEE---S---S---S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             ccccccchhhceEEecccccCCC---cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            4221 111111111    11122   468899999987777775 444445555432   111111     11 011245


Q ss_pred             CeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          552 PITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       552 ~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                      .+.+++++|.. ++++.+..+..|.++| .+|+.+..+...... .|-...--..-.|+|.| +|++.++. +.+..+++
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~-~gl~~~~~QpEGIa~d~-~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF-HGLSKDIPQPEGIAFDP-DGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG-GG-SS---SEEEEEE-T-T--EEEEE-TTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc-cCcccccCCccEEEECC-CCCEEEEc-CCceEEEe
Confidence            67889999864 5666677778899999 678877776643210 00000001133799999 78665554 66655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.13  Score=53.97  Aligned_cols=198  Identities=16%  Similarity=0.115  Sum_probs=136.3

Q ss_pred             eEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeee
Q 006126          418 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLC  492 (660)
Q Consensus       418 v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~  492 (660)
                      -..++.++.+  ..+....+..|.+.|..+.+..+...-- .....++++|+++.+..+..   ++++.+.|..+.....
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            3577888888  4555556789999998777766655422 26678899999988777665   6889999988854332


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecC---CCCCCCeEEEEEccCCCEEEE
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP---DKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~dg~~l~s  567 (660)
                      .     .+.+..    + ..++++|+|..+++.  .++.|.+.|.......+ -..   -.-......+.++|+|.+++.
T Consensus       155 ~-----~~vG~~----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         155 T-----IPVGNT----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             E-----EecCCC----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence            2     333322    2 789999999988874  68999999986655543 110   011344567899999997776


Q ss_pred             EecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCce
Q 006126          568 SCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLESEV  637 (660)
Q Consensus       568 g~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~-Dg~v~iw~~~~~~~  637 (660)
                      ....   +.+...|..++.........        ... ....+..+| +|..+.+... .+.|.+-|-.+...
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDLPV--------GSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEecccc--------ccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCce
Confidence            5554   58999999998876652211        111 233688999 7888777644 47888888877654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.57  E-value=0.01  Score=60.77  Aligned_cols=181  Identities=15%  Similarity=0.086  Sum_probs=107.8

Q ss_pred             CeEEEEeCCCCceeeEeec-cCCCeEEEE---EeCC----CCEEEEEeC----------CCcEEEEEcCCCeeeeceeee
Q 006126          436 SSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS----LNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLH  497 (660)
Q Consensus       436 ~~I~iwd~~~~~~~~~~~~-~~~~v~~l~---~sp~----~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~  497 (660)
                      ..|++.|..+.+.+..+.- ....+.++.   +..+    ..++++|+.          .|.|.++++..... ....+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-NNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-cceEEE
Confidence            3678888888877765543 223344443   3322    456776653          28899999988400 001111


Q ss_pred             eee-eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126          498 SFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       498 ~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~  575 (660)
                      .+. ....   ++|++++-- ++ +++++.++.|.+|++...+ ....-..+ ....+.++...  +++++.|.....|.
T Consensus        81 ~i~~~~~~---g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~  152 (321)
T PF03178_consen   81 LIHSTEVK---GPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVS  152 (321)
T ss_dssp             EEEEEEES---S-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred             EEEEEeec---CcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCEE
Confidence            111 1112   688888877 34 4777888999999998777 43333221 23455555544  67999998888888


Q ss_pred             EEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          576 VFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       576 iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ++..+. +..+..+...        ..+.+++++.|-+ +++.++.+..+|.|.++....
T Consensus       153 ~~~~~~~~~~l~~va~d--------~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  153 LLRYDEENNKLILVARD--------YQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTTE-EEEEEEE--------SS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEccCCEEEEEEec--------CCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence            775443 2222232211        3356677899987 557999999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.57  E-value=0.03  Score=58.31  Aligned_cols=208  Identities=15%  Similarity=0.124  Sum_probs=114.0

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc-------------------------------------------eeeEe
Q 006126          417 IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------------------------------------------TKAKL  452 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~-------------------------------------------~~~~~  452 (660)
                      .|+.+.|.++. .|++|...|.|.+|.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47788888888 88889889988887532110                                           01112


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee-eeccCCCCCCeEEEEEec-----CC---cEEE
Q 006126          453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHP-----DQ---IHLL  523 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp-----~~---~~l~  523 (660)
                      ....++|++++.+.-| +++.|..+|.+.|.|+|....+....+... ......  ..++++.|+.     |+   -.++
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~--~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS--SYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS------EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccc--cCeeEEEEEEEecCCCcccceEEE
Confidence            3346789999987544 999999999999999999877665555420 111111  5688888863     33   3455


Q ss_pred             EE-ecCcEEEEeCC--C-CceeeeecC--CCCCCCeEEEE-EccCC--------------------CEEEEEecCCeEEE
Q 006126          524 SI-HEGQIDVYEAP--T-LNHTSQLVP--DKMDLPITYAT-YSCDG--------------------KCIYVSCKSGHVKV  576 (660)
Q Consensus       524 ~~-~d~~i~iwd~~--~-~~~~~~~~~--~~~~~~v~~~~-~s~dg--------------------~~l~sg~~dg~I~i  576 (660)
                      +| ..|.+.+|.+.  . +.....+..  ..+..+|..+. |+.+.                    +-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            55 66899888764  1 211111111  12355555554 43221                    12344445678999


Q ss_pred             EECCCCeeEEEeecccccCCCCcCcccceEEEEE-----ecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          577 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAA-----HPLEPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~-----sp~d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                      +...+.+......          +....+..+.+     .. .+..|++-..||.|+++.+..-+..
T Consensus       240 ~~~~~~k~~~K~~----------~~~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  240 FKPPKSKGAHKSF----------DDPFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             E-TT---EEEEE-----------SS-EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETTT--EE
T ss_pred             EeCCCCcccceee----------ccccccceEEEEeecccC-CceEEEEEECCCcEEEEECCCchHh
Confidence            9998887665543          11122223333     22 4567888899999999999887764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.56  E-value=0.022  Score=54.23  Aligned_cols=217  Identities=13%  Similarity=0.047  Sum_probs=128.2

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCC-eEEEEeCC-----CeEEEEeCCCC-ceeeEeeccCCCeEEEEEeC
Q 006126          396 KISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFDD-----SSILVHCPCTK-KTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v--~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp  466 (660)
                      ...++|..+.+...++......-  -.=.||||| +|...-.|     |.|-|||.+.+ +.+..+..|.-....+.|.+
T Consensus        92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~  171 (366)
T COG3490          92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA  171 (366)
T ss_pred             eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence            45678887776665554322211  123699999 66655443     58999998754 45667788888888999999


Q ss_pred             CCCEEEEEeC------------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126          467 SLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  527 (660)
Q Consensus       467 ~~~~l~s~s~------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d  527 (660)
                      ||+.++.+..                  .-++.+.|..+|..+.+..+.  ...+.   -.|..++..+||+.++.+ ..
T Consensus       172 DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp--~~l~~---lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         172 DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP--ASLRQ---LSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc--hhhhh---cceeeeeeCCCCcEEEEEEee
Confidence            9999887542                  123455665666554443332  11122   368888888888877764 22


Q ss_pred             Cc-----EEEEeCCCCceeeeecCCC-----CCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCC
Q 006126          528 GQ-----IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQP  596 (660)
Q Consensus       528 ~~-----i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~  596 (660)
                      |.     --+=-...++++.-+....     ....|-+++.+.+..+++..+- .+...+||..+|..+..-...     
T Consensus       247 G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-----  321 (366)
T COG3490         247 GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-----  321 (366)
T ss_pred             CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----
Confidence            21     1111122344433332211     1355777888765555555444 456778999999987664432     


Q ss_pred             CCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                         +    +..|+-   ...=++..+.+|.+.++.-
T Consensus       322 ---d----aaGva~---~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         322 ---D----AAGVAA---AKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             ---c----ccccee---ccCceEEecCCceEEeccc
Confidence               1    112322   2333555567888888743

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.04  Score=57.68  Aligned_cols=203  Identities=17%  Similarity=0.134  Sum_probs=139.1

Q ss_pred             EEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---CCeEEEEeCCCCceeeE
Q 006126          380 SCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAK  451 (660)
Q Consensus       380 ~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~---d~~I~iwd~~~~~~~~~  451 (660)
                      ..++.+  +..+....  ++.|.+.|..+.+......... .-..++++|++ .+..+..   ++++.+.|..+++....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            345555  55444444  6899999988777776665332 44578999999 5544443   78999999999888877


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-  527 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-  527 (660)
                      ...-..+ ..++++|+|..++... .++.|.+.|..+..............+     .....+.++|+|.++.+.  .+ 
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEeccCC
Confidence            5433334 8899999999766555 788999999777433210000001111     245679999999988773  22 


Q ss_pred             -CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-CeEEEEECCCCeeEEEeec
Q 006126          528 -GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       528 -~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-g~I~iwd~~~~~~~~~~~~  590 (660)
                       +.+...|..++.....-...... ....+.++|+|+++++.... +.+.+.|..+.........
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence             58999999888776652221112 56678999999999988554 8899999999887776553

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.54  E-value=0.011  Score=60.62  Aligned_cols=112  Identities=13%  Similarity=0.158  Sum_probs=75.5

Q ss_pred             CCCCeEEEEEeCCEEEEEeCCcEEEEECCCCe-EEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC-CceeeE
Q 006126          375 PKDSISCFALRGSHLFSASGGKISIFSLETFQ-TLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAK  451 (660)
Q Consensus       375 h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~-~~~~~~-~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~-~~~~~~  451 (660)
                      ..++|++++-.+++|+.+.++.|.+|++...+ ....-. .....+.++....+ ++++|.....+.++..+. +..+..
T Consensus        87 ~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~  165 (321)
T PF03178_consen   87 VKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLIL  165 (321)
T ss_dssp             ESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEE
T ss_pred             ecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEE
Confidence            56789998888666888889999999998877 443322 22335666665533 888898888777764432 232333


Q ss_pred             eec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126          452 LKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       452 ~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~  487 (660)
                      +..  ....++++.|-++++.++.+..+|.+.++....
T Consensus       166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            322  345688888987777999999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00668 CTLH C-terminal to LisH motif

Probab=97.51  E-value=0.00014  Score=53.17  Aligned_cols=52  Identities=31%  Similarity=0.502  Sum_probs=39.8

Q ss_pred             cHHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHHhhhcc
Q 006126           97 DINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQ  149 (660)
Q Consensus        97 ~~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lell~~~e  149 (660)
                      +...++++|++|+|++|++.+...........+...|. |++|+|+|+++.+.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~-L~~q~~lell~~~~   55 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFE-LRKQKFLELVRQGK   55 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhH-HHHHHHHHHHHcCC
Confidence            36789999999999999999987744332333444555 99999999998763

Alpha-helical motif of unknown function.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.50  E-value=0.11  Score=51.78  Aligned_cols=230  Identities=13%  Similarity=0.019  Sum_probs=127.7

Q ss_pred             cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEE
Q 006126          321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKIS  398 (660)
Q Consensus       321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~  398 (660)
                      ..++.|+.|+.+| +.+++......                    ....    .+...|..+...  -+.+++-+|+.+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------~~~i----~~~~~I~ql~vl~~~~~llvLsd~~l~   59 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------PTRI----LKLSSITQLSVLPELNLLLVLSDGQLY   59 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcc--------------------ceeE----eecceEEEEEEecccCEEEEEcCCccE
Confidence            3577899998888 77777621111                    0100    133347777777  5667777789999


Q ss_pred             EEECCCCeEEEEE--------------cCCCCCeEEEE--EcCCC-eEEEEeCCCeEEEEeCCCC-----ceeeEeeccC
Q 006126          399 IFSLETFQTLATF--------------ANPPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTK-----KTKAKLKGHQ  456 (660)
Q Consensus       399 iwd~~~~~~~~~~--------------~~~~~~v~~v~--~sp~~-~l~s~~~d~~I~iwd~~~~-----~~~~~~~~~~  456 (660)
                      ++++.........              ......+..++  -...+ ..++....+.|.+|.....     +..+.+. -.
T Consensus        60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp  138 (275)
T PF00780_consen   60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LP  138 (275)
T ss_pred             EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cC
Confidence            9998764433311              12223444444  12333 3444444558888776542     3444444 45


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-----eccCCCCCCeEEEEEecCCcEEEEEecCcEE
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-----TGLVPETTIVNHIQFHPDQIHLLSIHEGQID  531 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~  531 (660)
                      ..+.++.|.  ++.++.|..+ ...+.|+.++....-.......     ....   .....+---+++.+|++ .+..-.
T Consensus       139 ~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~Ll~-~~~~g~  211 (275)
T PF00780_consen  139 DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSS---SKPLGIFQLSDNEFLLC-YDNIGV  211 (275)
T ss_pred             CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccC---CCceEEEEeCCceEEEE-ecceEE
Confidence            778899998  5567777644 5778899875432111111000     0001   11222333334555554 344344


Q ss_pred             EEeCCCCceee--eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          532 VYEAPTLNHTS--QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       532 iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      +.|. .|+..+  .+..   ...+.++++.  ..||++.+. +.|.||++.++++++.+..
T Consensus       212 fv~~-~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  212 FVNK-NGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEcC-CCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            4454 454433  2322   4455566663  457777665 5599999999999998873

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.48  E-value=0.13  Score=51.21  Aligned_cols=224  Identities=13%  Similarity=0.084  Sum_probs=122.9

Q ss_pred             CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe----------
Q 006126          386 GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL----------  452 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~----------  452 (660)
                      ++.|+.|. +| +.+++... ....+...  ...|..+...|+- .+++-+ |+.++++++..-.....-          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            77888888 56 99999833 33333322  2238899988876 444443 599999998754333210          


Q ss_pred             ----eccCCCeEEEE--EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe
Q 006126          453 ----KGHQNRITCLA--YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH  526 (660)
Q Consensus       453 ----~~~~~~v~~l~--~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  526 (660)
                          ......+..++  -.+.+...++.....+|.+|.............+.+.-.     ..+.+++|.  +..++++.
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence                01222344433  112344444455566888888766311100111211111     578899999  66777777


Q ss_pred             cCcEEEEeCCCCceeeeecCCCC----------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE--Eeeccccc
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAYA  594 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~~~  594 (660)
                      .+...+.|+.++.....+.....          ..++..+.. +++.+|++-  |..-.+.|. .|+...  .+.-.   
T Consensus       156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~---  228 (275)
T PF00780_consen  156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS---  228 (275)
T ss_pred             CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcC---
Confidence            77899999987766444322111          123333333 345666653  332333343 343332  22110   


Q ss_pred             CCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126          595 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW  639 (660)
Q Consensus       595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w  639 (660)
                           .   .+..+++..   .+|+..+. +.|-||++.+++...
T Consensus       229 -----~---~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  229 -----S---APQSVAYSS---PYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             -----C---chhEEEEEC---CEEEEECC-CEEEEEECcCCcEEE
Confidence                 1   123566543   47777665 459999999997643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.41  E-value=0.028  Score=61.86  Aligned_cols=202  Identities=12%  Similarity=0.066  Sum_probs=107.2

Q ss_pred             CCeEEEEEcCCC-eEEEEe------CCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc-EEE---
Q 006126          416 PIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCV---  482 (660)
Q Consensus       416 ~~v~~v~~sp~~-~l~s~~------~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~-i~v---  482 (660)
                      ..+.+.+++|+| .++...      .|.  .|.+++.. +.......+  ...+.-.|+|+|+.+++.+.... +++   
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            456788999999 554443      233  56666653 333222232  23778899999988877753312 222   


Q ss_pred             --------EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEE---EeCCCCce-e---eeecCC
Q 006126          483 --------WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTLNH-T---SQLVPD  547 (660)
Q Consensus       483 --------wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~i---wd~~~~~~-~---~~~~~~  547 (660)
                              .++..++...         ...   +.|..+.|||||..++...++.|++   -....|.. +   ..+.. 
T Consensus       427 ~~~gql~~~~vd~ge~~~---------~~~---g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~-  493 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---------RVP---GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP-  493 (591)
T ss_pred             CCCceEEEEeccCchhhh---------ccC---CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-
Confidence                    2333221100         111   5799999999999999855678777   44444541 1   11211 


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR  626 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~  626 (660)
                      .-...+.++.|..++.++ ++..++.-.+|.+.- |.....+..      +....+  +..++-+| +  .+.....+|.
T Consensus       494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~------~n~~~~--v~~vaa~~-~--~iyv~~~~g~  561 (591)
T PRK13616        494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS------RNLSAP--VVAVAASP-S--TVYVTDARAV  561 (591)
T ss_pred             ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCC------CCccCc--eEEEecCC-c--eEEEEcCCce
Confidence            113446889999999855 555544444444332 221111111      100112  33666655 2  3444456664


Q ss_pred             EEEEeCCCCceeccCCCCc
Q 006126          627 VHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       627 v~iw~~~~~~~~w~~~~~~  645 (660)
                      +.+=.-.+....|...+..
T Consensus       562 ~~l~~~~~~~~~W~ev~~l  580 (591)
T PRK13616        562 LQLPNSDSGDQYWREVPGL  580 (591)
T ss_pred             EEecCCCCCCCCceECccc
Confidence            4443333344577765554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.38  E-value=0.2  Score=53.35  Aligned_cols=241  Identities=12%  Similarity=0.069  Sum_probs=122.9

Q ss_pred             eEEEEEecCCCEEEEE-ECCC----cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          314 VVRLIYSHSGDFLVAL-TQTA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       314 V~~~~~spdg~~l~s~-s~dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +....+||||+++|.+ +..|    .++++|+.+++.                     +...+   .......+.|.  +
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---------------------l~d~i---~~~~~~~~~W~~d~  181 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---------------------LPDGI---ENPKFSSVSWSDDG  181 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---------------------EEEEE---EEEESEEEEECTTS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---------------------cCCcc---cccccceEEEeCCC
Confidence            3467899999988865 3333    366666555533                     22111   01111237777  4


Q ss_pred             CEEEEEe-CC-----------cEEEEECCCCeE--EEEEcCCCCC--eEEEEEcCCC-eEE-EEeCC---CeEEEEeCCC
Q 006126          387 SHLFSAS-GG-----------KISIFSLETFQT--LATFANPPPI--ATYFILLPQD-LFA-FGFDD---SSILVHCPCT  445 (660)
Q Consensus       387 ~~l~s~~-dg-----------~I~iwd~~~~~~--~~~~~~~~~~--v~~v~~sp~~-~l~-s~~~d---~~I~iwd~~~  445 (660)
                      +.|+... +.           .|..|.+.+...  ...+......  ...+..++|+ +++ .....   ..+++.|+..
T Consensus       182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            5554444 32           378888876543  2445443333  5678899999 444 33332   3588888876


Q ss_pred             C----ceeeEeeccCCCe-EEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126          446 K----KTKAKLKGHQNRI-TCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       446 ~----~~~~~~~~~~~~v-~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                      +    .....+......+ ..+... .+.+++....   .+.|...++..........   ....+.. ...+..+..  
T Consensus       262 ~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~---~l~~~~~-~~~l~~~~~--  334 (414)
T PF02897_consen  262 GGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWT---VLIPEDE-DVSLEDVSL--  334 (414)
T ss_dssp             TTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE---EEE--SS-SEEEEEEEE--
T ss_pred             cCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccccee---EEcCCCC-ceeEEEEEE--
Confidence            4    2233333333333 334333 4444444332   3567777887754211111   1222220 013444444  


Q ss_pred             CCcEEEE-E-ec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec----CCeEEEEECCCCeeEE
Q 006126          518 DQIHLLS-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRC  586 (660)
Q Consensus       518 ~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~----dg~I~iwd~~~~~~~~  586 (660)
                      .+.+|+. . .+  ..|+++|+..+.....+.... .+.|..+...++++.+.....    -+.++.||+.+++...
T Consensus       335 ~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  335 FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            4556665 3 34  369999997355544544432 455666666666665443222    3789999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.38  E-value=0.38  Score=53.83  Aligned_cols=316  Identities=12%  Similarity=0.040  Sum_probs=163.3

Q ss_pred             EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeecccee
Q 006126          276 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME  355 (660)
Q Consensus       276 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~  355 (660)
                      +++.|.++..+.+--.-..  ........++...-...|.-..|-.|+.||.++..||.+.-+.+......         
T Consensus       550 ~~aVG~Ws~~~~~l~~~pd--~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~---------  618 (1096)
T KOG1897|consen  550 LLAVGLWSDISMILTFLPD--LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ---------  618 (1096)
T ss_pred             EEEEEeecceEEEEEECCC--cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce---------
Confidence            7888888877655433210  11111111322223445666777778899999999999887654433221         


Q ss_pred             EEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eE
Q 006126          356 SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF  429 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l  429 (660)
                        .-|.+     +..   -...++.--.|+   ...+++++|.-..+|.-+..-+...+.. ..--..+.|+.+.   .+
T Consensus       619 --lsd~K-----k~~---lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~-kev~~~c~f~s~a~~d~l  687 (1096)
T KOG1897|consen  619 --LSDRK-----KVT---LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL-KEVNHMCPFNSDAYPDSL  687 (1096)
T ss_pred             --Ecccc-----ccc---cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch-HHhhhhcccccccCCceE
Confidence              11111     000   123444444555   5667777777666776543222211110 0001122344333   34


Q ss_pred             EEEeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCCCEEEEEeCC--------------CcEEEEEcCCCeeeec
Q 006126          430 AFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGAD--------------AQLCVWDAVGWKKLCS  493 (660)
Q Consensus       430 ~s~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--------------g~i~vwd~~~~~~~~~  493 (660)
                      +++. .+.+++..+..-+.  ++++. -......+++.+....+.+.+.-              ..++++|-++.+....
T Consensus       688 ~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~  765 (1096)
T KOG1897|consen  688 ASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS  765 (1096)
T ss_pred             EEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence            4443 34455554443222  23332 22345556666643333333221              1377788877554443


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecC-CcEEEEEe-----------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      .........     ..+.++.|..| +.++++|.           .|.|.++.+..++.++......-.+.+.++.. -+
T Consensus       766 hef~~~E~~-----~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fn  839 (1096)
T KOG1897|consen  766 HEFERNETA-----LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FN  839 (1096)
T ss_pred             cccccccee-----eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hC
Confidence            333311111     24566668877 66776641           36788888877444444422122455555543 36


Q ss_pred             CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          562 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       562 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      |+++|.-  +..|++|+..+.+.+..-.       ++ ..++.  .+...- .++.++.|.--+.+.+-....
T Consensus       840 gkllA~I--n~~vrLye~t~~~eLr~e~-------~~-~~~~~--aL~l~v-~gdeI~VgDlm~Sitll~y~~  899 (1096)
T KOG1897|consen  840 GKLLAGI--NQSVRLYEWTTERELRIEC-------NI-SNPII--ALDLQV-KGDEIAVGDLMRSITLLQYKG  899 (1096)
T ss_pred             CeEEEec--CcEEEEEEccccceehhhh-------cc-cCCeE--EEEEEe-cCcEEEEeeccceEEEEEEec
Confidence            7777654  5689999999885444322       11 23344  444444 788999998888776654443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.14  Score=51.38  Aligned_cols=204  Identities=18%  Similarity=0.092  Sum_probs=114.2

Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee----c-cCCCeEEEEEeCC
Q 006126          394 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK----G-HQNRITCLAYSLS  467 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~----~-~~~~v~~l~~sp~  467 (660)
                      .+.|.-|+..+++.. .+.. ...+.++.....+ .|+++..  -+.+++.+++..+..+.    + .....+.+...|+
T Consensus        46 ~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd  121 (307)
T COG3386          46 GGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD  121 (307)
T ss_pred             CCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence            577888888765432 2222 2223344443344 5555533  34566666555433321    1 1245667888999


Q ss_pred             CCEEEEEeC-----------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEe
Q 006126          468 LNVLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE  534 (660)
Q Consensus       468 ~~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd  534 (660)
                      |.+.+....           -|.++.+|. .+..     .. ...++-   ..-+.++||||++.++.+  ..+.|+-|+
T Consensus       122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~-----~~-l~~~~~---~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         122 GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV-----VR-LLDDDL---TIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCEEEeCCCccccCccccCCcceEEEEcC-CCCE-----EE-eecCcE---EecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            987665433           123444443 2211     11 222222   345689999999988875  557888887


Q ss_pred             CCC--Cce---eeeecCCCCCCCeEEEEEccCCCEEEEEecCC-eEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126          535 APT--LNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       535 ~~~--~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      +..  +..   ...+......+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+.          .++.++
T Consensus       192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~----------~~~t~~  260 (307)
T COG3386         192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV----------KRPTNP  260 (307)
T ss_pred             cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC----------CCCccc
Confidence            752  111   11111111245566788888999887665554 89999999 88888887531          224466


Q ss_pred             EEecCCCCEEEEEe
Q 006126          609 AAHPLEPNRIALGL  622 (660)
Q Consensus       609 ~~sp~d~~~l~s~s  622 (660)
                      +|--.+.+.|...+
T Consensus       261 ~FgG~~~~~L~iTs  274 (307)
T COG3386         261 AFGGPDLNTLYITS  274 (307)
T ss_pred             eEeCCCcCEEEEEe
Confidence            77543455544433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.076  Score=50.76  Aligned_cols=211  Identities=15%  Similarity=0.040  Sum_probs=124.9

Q ss_pred             EEEEEcCCC--eEEEEeCCC-eEEEEeCCCCceeeEeeccCCC--eEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 006126          419 TYFILLPQD--LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNR--ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW  488 (660)
Q Consensus       419 ~~v~~sp~~--~l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~  488 (660)
                      ..++++|.-  -++.+-.-| ...++|..+.+...++...++.  .-.=.|||||.+|...-.|     |.|-+||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            367888876  555565555 4678998888766655332211  1122599999999876443     67999999863


Q ss_pred             eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec-------------------CcEEEEeCCCCceeeeecCC--
Q 006126          489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-------------------GQIDVYEAPTLNHTSQLVPD--  547 (660)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d-------------------~~i~iwd~~~~~~~~~~~~~--  547 (660)
                      -    ..+- -...|.   -....+.+.+||+.+++...                   -++.+.|..+|..+.+....  
T Consensus       151 f----qrvg-E~~t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~  222 (366)
T COG3490         151 F----QRVG-EFSTHG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS  222 (366)
T ss_pred             c----ceec-ccccCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence            2    1111 122333   34567999999999987322                   13566676677766554433  


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCe-----EEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKSGH-----VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~dg~-----I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .+.-.|..++..+||..++.+-..|.     -.+=....++.+..+....-.-.   .-.-|+-+++.+-.++...+|+=
T Consensus       223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---~~anYigsiA~n~~~glV~lTSP  299 (366)
T COG3490         223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---AFANYIGSIAANRRDGLVALTSP  299 (366)
T ss_pred             hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH---HHHhhhhheeecccCCeEEEecC
Confidence            45678889999999987765543321     11112233444443332100000   00123447888775555555555


Q ss_pred             CCCeEEEEeCCCCceecc
Q 006126          623 TNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       623 ~Dg~v~iw~~~~~~~~w~  640 (660)
                      ..+...|||..+|...-.
T Consensus       300 ~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         300 RGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             CCCeEEEEEcCCCcEEec
Confidence            666788999999986443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.24  E-value=0.008  Score=66.99  Aligned_cols=132  Identities=14%  Similarity=0.150  Sum_probs=95.1

Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCC-eEEEEEcC-----CC-eEEEEeCCCeEEEEeCCCCc--eeeE-ee--ccCCCeEE
Q 006126          394 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKAK-LK--GHQNRITC  461 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~~~~-v~~v~~sp-----~~-~l~s~~~d~~I~iwd~~~~~--~~~~-~~--~~~~~v~~  461 (660)
                      ...|+-.|+++|+.+..+..+... |..++-..     +. ..+.|-.+..+..||++-..  ++.. ..  ......+|
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~  582 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC  582 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence            478999999999999999877654 55444321     13 56788889999999988532  2211 11  13456778


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  535 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~  535 (660)
                      ++-+.+| ++|+|+.+|.||+||-- |.     ..++.+.+-.   .+|..|..+.||+++++..+..+.+++.
T Consensus       583 ~aTt~~G-~iavgs~~G~IRLyd~~-g~-----~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  583 FATTEDG-YIAVGSNKGDIRLYDRL-GK-----RAKTALPGLG---DPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             EEecCCc-eEEEEeCCCcEEeeccc-ch-----hhhhcCCCCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            8777776 78899999999999943 21     1232333433   6899999999999999987888888885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0019  Score=67.64  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=76.0

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      ...+.-+.|+|.- .||.+..+|.|.++.+. .+.+.++..|...++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3456778999998 99999999999999887 777888887777777 99999999999999999999999999976554


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEec
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                      .....     ..   ..|.++.|.+
T Consensus        99 ~~~~s-----~e---~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFS-----VE---TDISKGIWDR  115 (665)
T ss_pred             ccccc-----cc---cchheeeccc
Confidence            43221     11   4677787874

>smart00320 WD40 WD40 repeats

Probab=97.09  E-value=0.0015  Score=42.01  Aligned_cols=39  Identities=31%  Similarity=0.512  Sum_probs=34.3

Q ss_pred             CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126          446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  484 (660)
Q Consensus       446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd  484 (660)
                      ++....+..|...|.++.|++++..+++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.07  E-value=0.051  Score=59.92  Aligned_cols=197  Identities=12%  Similarity=0.040  Sum_probs=99.8

Q ss_pred             CC-eEEEEeCC------CeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeee
Q 006126          426 QD-LFAFGFDD------SSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKL  491 (660)
Q Consensus       426 ~~-~l~s~~~d------~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~  491 (660)
                      ++ .++.||.+      ..+..||+.+..-..  .+....... ++ ..-+|+..+.|+.++     ++..||..+.+= 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W-  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-AVIDDTIYAIGGQNGTNVERTIECYTMGDDKW-  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-EEECCEEEEECCcCCCCCCceEEEEECCCCeE-
Confidence            55 66677753      357888987764321  111111111 22 223677778888764     478899876431 


Q ss_pred             eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec-----------------------CcEEEEeCCCCceeeeecCC
Q 006126          492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----------------------GQIDVYEAPTLNHTSQLVPD  547 (660)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d-----------------------~~i~iwd~~~~~~~~~~~~~  547 (660)
                        ..+..+.....    .. +++ .-+|+..+.| .+                       ..+..||..+.+-...-...
T Consensus       380 --~~~~~mp~~r~----~~-~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~  451 (557)
T PHA02713        380 --KMLPDMPIALS----SY-GMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW  451 (557)
T ss_pred             --EECCCCCcccc----cc-cEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence              11111111111    11 111 2246655554 32                       24778888766542211110


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecC------CeEEEEECCC-CeeE--EEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTST-LELR--CQINLTAYAQPGTISLELYPLVIAAHPLEPNRI  618 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~d------g~I~iwd~~~-~~~~--~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l  618 (660)
                        .......+..-+|+..+.|+.+      ..+..||..+ .+-.  ..++..        .....  .++.   ++.+.
T Consensus       452 --~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--------r~~~~--~~~~---~~~iy  516 (557)
T PHA02713        452 --TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--------LSALH--TILH---DNTIM  516 (557)
T ss_pred             --cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--------cccce--eEEE---CCEEE
Confidence              1111111223356766777654      2467899887 4322  222110        11111  2222   67899


Q ss_pred             EEEeCCC--eEEEEeCCCCceeccCCCCcccccc
Q 006126          619 ALGLTNG--RVHVIEPLESEVEWGKLPFTDSREF  650 (660)
Q Consensus       619 ~s~s~Dg--~v~iw~~~~~~~~w~~~~~~~~~~~  650 (660)
                      ++||.||  ++-.||+.+  .+|...+|.-+..+
T Consensus       517 v~Gg~~~~~~~e~yd~~~--~~W~~~~~~~~~~~  548 (557)
T PHA02713        517 MLHCYESYMLQDTFNVYT--YEWNHICHQHSNSY  548 (557)
T ss_pred             EEeeecceeehhhcCccc--ccccchhhhcCCce
Confidence            9999998  677777755  57988888765543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.034  Score=57.48  Aligned_cols=137  Identities=15%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eE-----EEEeCCCeEEEEeCCCCc--eeeEeecc--
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF-----AFGFDDSSILVHCPCTKK--TKAKLKGH--  455 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l-----~s~~~d~~I~iwd~~~~~--~~~~~~~~--  455 (660)
                      |.++. ...++-.|++.|+.+....-+.. |+-+.+.|+.   .+     +.|-.|..|.-||++-..  .+....+|  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            33444 56788899999999999887666 7777888876   33     457788899999987422  22222232  


Q ss_pred             --CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEE
Q 006126          456 --QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY  533 (660)
Q Consensus       456 --~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iw  533 (660)
                        .....|++-..+| ++++||.+|.|++||- .+     ...++.+.+-.   .+|..+..+.+|++|++..+..+.+.
T Consensus       428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~-----~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~tyLlLi  497 (644)
T KOG2395|consen  428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IG-----RRAKTALPGLG---DAIKHVDVTADGKWILATCKTYLLLI  497 (644)
T ss_pred             ccccccceeeecCCc-eEEEeecCCcEEeehh-hh-----hhhhhcccccC---CceeeEEeeccCcEEEEecccEEEEE
Confidence              2345666666565 7889999999999997 32     22222344444   68999999999999999777888777


Q ss_pred             eCC
Q 006126          534 EAP  536 (660)
Q Consensus       534 d~~  536 (660)
                      ++.
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            753

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.06  E-value=0.013  Score=65.50  Aligned_cols=141  Identities=16%  Similarity=0.133  Sum_probs=97.0

Q ss_pred             EEEEeCCCeEEEEeCCCCceeeEeeccCCC-eEEEEEeCC-------CCEEEEEeCCCcEEEEEcCCCe-eeeceeeeee
Q 006126          429 FAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLS-------LNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSF  499 (660)
Q Consensus       429 l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~-------~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~  499 (660)
                      |........++-.|++.|+.+..+..|... |..  +.|+       ....+.|-.+..+..||.|-.. .+.....+..
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y  574 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY  574 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence            333345678999999999999999887644 554  4443       2345667788999999998632 1110111101


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                        ...   ...+|++-+.+|...+.+.+|.||+||- .|+.-++..+ .-+.+|.++..+.||+||++.+. ..+.+++.
T Consensus       575 --~~~---~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  575 --SSK---NNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             --ccC---CCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence              111   4678898898997777789999999994 4544444433 24799999999999999987764 56667764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.98  E-value=0.55  Score=49.95  Aligned_cols=199  Identities=11%  Similarity=0.018  Sum_probs=107.8

Q ss_pred             EEEEcCCC-eEEEE-eCCC----eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----------cEEE
Q 006126          420 YFILLPQD-LFAFG-FDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----------QLCV  482 (660)
Q Consensus       420 ~v~~sp~~-~l~s~-~~d~----~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----------~i~v  482 (660)
                      ...++|+| +++.+ +..|    .++++|+.+|+.+...-.. .....+.|.++++.|+....+.           .|+.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            56789999 55543 4444    6999999999776532111 1122389999998887766443           2777


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCC-eEEEEEecCCcEEEE-E---ec-CcEEEEeCCCC----ceeeeecCCCCCCC
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPDQIHLLS-I---HE-GQIDVYEAPTL----NHTSQLVPDKMDLP  552 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~-~---~d-~~i~iwd~~~~----~~~~~~~~~~~~~~  552 (660)
                      |.+.+.....    ..++.+..+  .. ...+..++|+++++. +   .+ ..+++.|+..+    .....+... ..+.
T Consensus       207 ~~~gt~~~~d----~lvfe~~~~--~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~  279 (414)
T PF02897_consen  207 HKLGTPQSED----ELVFEEPDE--PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDGV  279 (414)
T ss_dssp             EETTS-GGG-----EEEEC-TTC--TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS-
T ss_pred             EECCCChHhC----eeEEeecCC--CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCce
Confidence            8877643211    113333332  23 678899999999886 3   33 56899999875    222333221 1333


Q ss_pred             eEEEEEccCCCEEEEEec---CCeEEEEECCCCee---EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC-
Q 006126          553 ITYATYSCDGKCIYVSCK---SGHVKVFDTSTLEL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG-  625 (660)
Q Consensus       553 v~~~~~s~dg~~l~sg~~---dg~I~iwd~~~~~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg-  625 (660)
                      ...+... .+.+++....   ++.|.-.++.+...   ...+..+        ...+.+..+...  .+.+++....++ 
T Consensus       280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~--------~~~~~l~~~~~~--~~~Lvl~~~~~~~  348 (414)
T PF02897_consen  280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE--------DEDVSLEDVSLF--KDYLVLSYRENGS  348 (414)
T ss_dssp             EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----------SSSEEEEEEEEE--TTEEEEEEEETTE
T ss_pred             EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC--------CCceeEEEEEEE--CCEEEEEEEECCc
Confidence            3334333 3434443322   36777788877653   2233221        222333344432  234555555555 


Q ss_pred             -eEEEEeCCCCce
Q 006126          626 -RVHVIEPLESEV  637 (660)
Q Consensus       626 -~v~iw~~~~~~~  637 (660)
                       .|+++++..+..
T Consensus       349 ~~l~v~~~~~~~~  361 (414)
T PF02897_consen  349 SRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEEEEETT-TEE
T ss_pred             cEEEEEECCCCcE
Confidence             588899983333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.029  Score=57.96  Aligned_cols=144  Identities=14%  Similarity=0.127  Sum_probs=100.0

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE-------EEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-------l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      ++.++..-..++-.|++.|+.+..++-+.. |+-+.+.|+.+.       -+.|-.|..|.-||.+-...   ..+. ..
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~-~~  422 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLA-VV  422 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceee-ee
Confidence            556666667899999999999999987766 777788886542       23466788999999985221   1111 22


Q ss_pred             eccCCC-CCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          501 TGLVPE-TTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       501 ~~~~~~-~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      .+|.-. .....|.+-..+|..++.|.+|.|++||- .+...++..+ +-..+|..+..+.||++|++.+ +..+.+-++
T Consensus       423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            222100 03456777777887666689999999997 5555445444 2488999999999999998765 455666554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.90  E-value=0.45  Score=45.93  Aligned_cols=185  Identities=15%  Similarity=0.155  Sum_probs=111.5

Q ss_pred             CeEEEEE-e-CCEEEEEe-C--CcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeE
Q 006126          378 SISCFAL-R-GSHLFSAS-G--GKISIFSLETFQTLATFANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK  451 (660)
Q Consensus       378 ~v~~v~~-s-~~~l~s~~-d--g~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~  451 (660)
                      -...+.| . |.++-+.+ -  ..|+.+|+.+|+..+...-.. .---.++...|....-.-.++...+||..+-+.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence            3457778 4 45555555 3  489999999999877655332 222344454443444445788999999999988888


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI  530 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i  530 (660)
                      +. ..+.=+.++  .|++.|+.......++.+|..+.+......+.  ..+..  ...++.+.+. +|...|-- ....|
T Consensus       126 ~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  126 FP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TTEEEEEETTSSEE
T ss_pred             Ee-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            76 344556665  46777877777889999999886654433333  11111  1356677776 55544434 66788


Q ss_pred             EEEeCCCCceeeeecCC----------C---CCCCeEEEEEccCCCEEEEEec
Q 006126          531 DVYEAPTLNHTSQLVPD----------K---MDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~----------~---~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      ...|..+|+.+..+...          .   .....+.++++|..+.++..+.
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            89999999887654210          0   1356789999987765554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.83  E-value=0.1  Score=57.57  Aligned_cols=185  Identities=9%  Similarity=-0.011  Sum_probs=99.7

Q ss_pred             CCeEEEEEe--CCEEEEEe-------CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---------
Q 006126          377 DSISCFALR--GSHLFSAS-------GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---------  435 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~-------dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---------  435 (660)
                      ..+...+++  |+.++...       |.  .|.+++.. +.. +.+... ...+.-.|+||| .+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            356677777  66655443       33  45555642 222 333222 237788999997 66555432         


Q ss_pred             ---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE---EEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126          436 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI  509 (660)
Q Consensus       436 ---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~  509 (660)
                         +.+.+.++..+....   ...+.|..+.|+|||.+++... ++.|.+   -....|...-..+.. +..+-.   ..
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~-l~~~l~---~~  498 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE-VGPGLG---DT  498 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE-eecccC---Cc
Confidence               233333444433322   2356799999999999988766 577776   443444311111111 222222   23


Q ss_pred             eEEEEEecCCcEEEEEec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126          510 VNHIQFHPDQIHLLSIHE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       510 v~~~~~sp~~~~l~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~  575 (660)
                      +.++.|.+++.+++...+  ..++..++. |.....+.......++..++=+++  -++....+|.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            678999999996654433  335444553 333222222223566777776653  455555566443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.78  E-value=0.29  Score=45.56  Aligned_cols=149  Identities=9%  Similarity=0.019  Sum_probs=86.9

Q ss_pred             CCeEEEEEcCCCeEEEEeCC----------CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEE
Q 006126          416 PIATYFILLPQDLFAFGFDD----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWD  484 (660)
Q Consensus       416 ~~v~~v~~sp~~~l~s~~~d----------~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd  484 (660)
                      ...+.-..+|+|.+..|...          |.++.|-..  ..+..+...-+--+.++|+.+.+.+. +-+.+-+|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            34556677899933444422          234444321  12222222223345788988776655 445567787787


Q ss_pred             --cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-c
Q 006126          485 --AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-C  560 (660)
Q Consensus       485 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~  560 (660)
                        ..+|.......+-.+.......+-..-.++...+|.+.++. ..++|...|..+|+.+..+...  ...|+++||. +
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk  264 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK  264 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence              66665444333322222100000123346667788887776 7789999999999999998774  7889999996 4


Q ss_pred             CCCEEEEE
Q 006126          561 DGKCIYVS  568 (660)
Q Consensus       561 dg~~l~sg  568 (660)
                      +-..+++.
T Consensus       265 n~d~~yvT  272 (310)
T KOG4499|consen  265 NLDILYVT  272 (310)
T ss_pred             CccEEEEE
Confidence            44455543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.78  E-value=0.064  Score=44.07  Aligned_cols=97  Identities=13%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             eEEEEEec---CC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126          314 VVRLIYSH---SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH  388 (660)
Q Consensus       314 V~~~~~sp---dg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~  388 (660)
                      |.++++..   || +.|++||.|..|++|+-+.-              ++.         .   .-.+.|.+++-. +..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--------------~~E---------i---~e~~~v~~L~~~~~~~   55 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--------------VAE---------I---TETDKVTSLCSLGGGR   55 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--------------EEE---------E---ecccceEEEEEcCCCE
Confidence            55666554   33 57999999999999874321              111         1   244667777777 777


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE---cCCC--eEEEEeCCCeEE
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL---LPQD--LFAFGFDDSSIL  439 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~---sp~~--~l~s~~~d~~I~  439 (660)
                      ++.+- +|+|-+|+-.  ..+...+.... +.++.+   ..||  .|++|-.+|.|-
T Consensus        56 F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   56 FAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            88887 8999999753  33444443333 444443   3455  889998888764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.75  E-value=0.21  Score=56.67  Aligned_cols=231  Identities=9%  Similarity=-0.039  Sum_probs=124.0

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC--------eEEEEEc----------------CCC-eEEEEeCCCeEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPI--------ATYFILL----------------PQD-LFAFGFDDSSIL  439 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~--------v~~v~~s----------------p~~-~l~s~~~d~~I~  439 (660)
                      ++.++.++ ++.|.-.|..+|+.+..+......        .+.+++.                .++ .++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            66777777 899999999999998887633211        1122221                123 788899999999


Q ss_pred             EEeCCCCceeeEeeccCCCeE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEEcCCCeeeece
Q 006126          440 VHCPCTKKTKAKLKGHQNRIT-------------CLAYSL--SLNVLVSSGA----------DAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~v~-------------~l~~sp--~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~  494 (660)
                      -.|.++|+.+..+.. .+.|.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+..-..
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876632 22111             111122  2345666643          688999999998765433


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec-CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG  572 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg  572 (660)
                      ...     ..    .....  -+.+.....+ .+ -...-+|.+++....-. +  ...    ..+....+........+
T Consensus       353 ~~g-----~p----~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-G--n~~----pd~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       353 DPG-----NP----DPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM-G--NQT----PDQWGGDRTPADEKYSS  414 (764)
T ss_pred             ecC-----CC----CcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC-C--Ccc----ccccCCccccCcccccc
Confidence            221     00    00000  0122222211 11 12334444433321111 0  000    00100000000111246


Q ss_pred             eEEEEECCCCeeEEEeecccccCCCCcCccc-----ceEEEEEecCCCC---EEEEEeCCCeEEEEeCCCCceeccC
Q 006126          573 HVKVFDTSTLELRCQINLTAYAQPGTISLEL-----YPLVIAAHPLEPN---RIALGLTNGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v-----~~~~v~~sp~d~~---~l~s~s~Dg~v~iw~~~~~~~~w~~  641 (660)
                      .|.-.|.++|+....+...      |++..-     ..+-+.+.-.+|+   .++.++.+|.+++.|-.+|+..|..
T Consensus       415 slvALD~~TGk~~W~~Q~~------~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       415 SLVALDATTGKERWVFQTV------HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             eEEEEeCCCCceEEEeccc------CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            6778899999988887642      111100     0111222211443   7889999999999999999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.74  E-value=0.12  Score=42.58  Aligned_cols=101  Identities=16%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             eEEEEEeC---CC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 006126          459 ITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE  534 (660)
Q Consensus       459 v~~l~~sp---~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd  534 (660)
                      |+++++..   || +.|++||.|..|++|+-..       .+..+...     +.|++++-...+++.++-.+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~-----~~v~~L~~~~~~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET-----DKVTSLCSLGGGRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc-----cceEEEEEcCCCEEEEEecCCEEEEEe
Confidence            55666544   33 5799999999999998665       12212222     578888888776655556899999998


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEc-cC--C-CEEEEEecCCeEEE
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYS-CD--G-KCIYVSCKSGHVKV  576 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s-~d--g-~~l~sg~~dg~I~i  576 (660)
                      -.  ..+-..+.   ...++++++. .+  | .-|++|-.+|.|-+
T Consensus        70 ~~--~RlWRiKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   70 RS--QRLWRIKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             Cc--ceeeeecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            63  22223322   4446666554 33  3 36888888888743

>smart00320 WD40 WD40 repeats

Probab=96.72  E-value=0.0051  Score=39.28  Aligned_cols=38  Identities=21%  Similarity=0.150  Sum_probs=33.1

Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 006126          405 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC  442 (660)
Q Consensus       405 ~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd  442 (660)
                      +++...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566677888899999999998 999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.011  Score=62.12  Aligned_cols=80  Identities=10%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV  629 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i  629 (660)
                      ...+..+.|+|.-..+|.+..+|.|-++.++ .+.+++++.+        +.++. .+++|.| ||+.||.|-.||+|++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p--------~~~v~-~sL~W~~-DGkllaVg~kdG~I~L   88 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP--------GENVT-ASLCWRP-DGKLLAVGFKDGTIRL   88 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC--------CCccc-eeeeecC-CCCEEEEEecCCeEEE
Confidence            4567889999999999999999999999988 7777777643        22222 3899999 8999999999999999


Q ss_pred             EeCCCCceecc
Q 006126          630 IEPLESEVEWG  640 (660)
Q Consensus       630 w~~~~~~~~w~  640 (660)
                      -|+.++...-+
T Consensus        89 ~Dve~~~~l~~   99 (665)
T KOG4640|consen   89 HDVEKGGRLVS   99 (665)
T ss_pred             EEccCCCceec
Confidence            99999876444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.51  E-value=1  Score=44.95  Aligned_cols=278  Identities=13%  Similarity=0.060  Sum_probs=124.7

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL  389 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l  389 (660)
                      ...+..|.|..+..-.++ +..+.|  +....+..            -|.......-.     .-.-...++.|. ...+
T Consensus        16 ~~~l~dV~F~d~~~G~~V-G~~g~i--l~T~DGG~------------tW~~~~~~~~~-----~~~~~l~~I~f~~~~g~   75 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAV-GAYGTI--LKTTDGGK------------TWQPVSLDLDN-----PFDYHLNSISFDGNEGW   75 (302)
T ss_dssp             SS-EEEEEESSSS-EEEE-ETTTEE--EEESSTTS------------S-EE-----S----------EEEEEEEETTEEE
T ss_pred             CCceEEEEEecCCEEEEE-ecCCEE--EEECCCCc------------cccccccCCCc-----cceeeEEEEEecCCceE
Confidence            668999999955554444 455554  33332221            23321110000     011235677777 4444


Q ss_pred             EEEeCCcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCce-eeEeeccCCCeEEEEEe
Q 006126          390 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYS  465 (660)
Q Consensus       390 ~s~~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s  465 (660)
                      ++|..+ +.+...+.|+.-..+.   ..+.....+....++.....+..|.|+.=. +.|+. ........+.+..+..+
T Consensus        76 ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~  153 (302)
T PF14870_consen   76 IVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS  153 (302)
T ss_dssp             EEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred             EEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence            544455 3344444444333322   122233344444444222234445443322 23332 22234455778888899


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCceeee-
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQ-  543 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~-~~~~~~~~-  543 (660)
                      +||+++++++.-....-||--...   ..+..   ..-.   ..|.+|.|.|++...+++..|.|+.=+. .....-.. 
T Consensus       154 ~dG~~vavs~~G~~~~s~~~G~~~---w~~~~---r~~~---~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~  224 (302)
T PF14870_consen  154 SDGRYVAVSSRGNFYSSWDPGQTT---WQPHN---RNSS---RRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEP  224 (302)
T ss_dssp             TTS-EEEEETTSSEEEEE-TT-SS----EEEE-----SS---S-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---
T ss_pred             CCCcEEEEECcccEEEEecCCCcc---ceEEc---cCcc---ceehhceecCCCCEEEEeCCcEEEEccCCCCccccccc
Confidence            999988887665566678764310   01111   1111   5899999999998888888888888772 22221111 


Q ss_pred             -ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          544 -LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       544 -~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                       .........+..++|.+++...++|+. |.+ +.....|+.=........     .....+  .+.|.+ + +.-...+
T Consensus       225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~-----~~~n~~--~i~f~~-~-~~gf~lG  293 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGEN-----VPSNLY--RIVFVN-P-DKGFVLG  293 (302)
T ss_dssp             B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTT-----SSS-----EEEEEE-T-TEEEEE-
T ss_pred             cCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccC-----CCCceE--EEEEcC-C-CceEEEC
Confidence             111112445899999998888877654 444 345555654333321100     022244  888876 3 3444455


Q ss_pred             CCCeEEEE
Q 006126          623 TNGRVHVI  630 (660)
Q Consensus       623 ~Dg~v~iw  630 (660)
                      .+|.|.=|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            78877554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.50  E-value=0.22  Score=48.14  Aligned_cols=170  Identities=8%  Similarity=0.079  Sum_probs=110.4

Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI  530 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i  530 (660)
                      +.+....+.++.|+|+.+.|++......-.+|=...|+.+...++. ..       ...-.+.+..+|.++++- .++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g~-------~DpE~Ieyig~n~fvi~dER~~~l  152 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-GF-------SDPETIEYIGGNQFVIVDERDRAL  152 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-cc-------CChhHeEEecCCEEEEEehhcceE
Confidence            3444556999999999999999888888888877888877776666 11       234578888888888885 78888


Q ss_pred             EEEeCCCCceeee-------ecCCCC-CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC-c
Q 006126          531 DVYEAPTLNHTSQ-------LVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS-L  601 (660)
Q Consensus       531 ~iwd~~~~~~~~~-------~~~~~~-~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~-~  601 (660)
                      .++.+.....+..       +....+ +.....++|+|..+.+..+-+-.-+.||.+..+...  +..+..  .++.. .
T Consensus       153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~--~~~~~~~  228 (316)
T COG3204         153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHAS--LDPTADR  228 (316)
T ss_pred             EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccc--cCccccc
Confidence            8887765432211       111112 567889999999999988888777777776633211  111100  01101 1


Q ss_pred             ccc---eEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          602 ELY---PLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       602 ~v~---~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .++   +.++.|++..+..|+-+.+++.|.-.+..
T Consensus       229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence            111   33778887666677766666666555544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.43  E-value=0.41  Score=52.82  Aligned_cols=223  Identities=15%  Similarity=0.110  Sum_probs=116.9

Q ss_pred             CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCeEEEEeCC-C-----eEEEEeCCCCceee--EeeccCCCeEEEEEe
Q 006126          395 GKISIFSLETFQTLATFANP-PPIATYFILLPQDLFAFGFDD-S-----SILVHCPCTKKTKA--KLKGHQNRITCLAYS  465 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~~l~s~~~d-~-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s  465 (660)
                      ..+..||..++.......-. ...-.+++...+-..++||.| |     ++..||..+++-..  .+..........  .
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--V  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--E
Confidence            36888888877544332212 222233444333378888888 3     68899988776332  111111111111  2


Q ss_pred             CCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE-EecCCcEEEE-Eec------CcEEE
Q 006126          466 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ-FHPDQIHLLS-IHE------GQIDV  532 (660)
Q Consensus       466 p~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~~-~~d------~~i~i  532 (660)
                      -+|...++|+.||     ++-.||..+.+-....++.   .       ...... ..-+|...++ |.+      .++..
T Consensus       379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~-------~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~  448 (571)
T KOG4441|consen  379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---T-------RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVEC  448 (571)
T ss_pred             ECCEEEEEeccccccccccEEEecCCCCcccccCCCC---c-------ceeeeEEEEECCEEEEEcCcCCCccccceEEE
Confidence            2688888999886     4778888773311111111   1       111111 1224655555 433      35888


Q ss_pred             EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126          533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      ||..+.+....-......... .++ .-++...+.||.|+     +|..||..+.+-...-.  ...+    .....  .
T Consensus       449 YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~--m~~~----rs~~g--~  518 (571)
T KOG4441|consen  449 YDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP--MTSP----RSAVG--V  518 (571)
T ss_pred             EcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEccc--Cccc----ccccc--E
Confidence            998876643322211101111 122 24677778888776     37789988765443311  1111    11122  2


Q ss_pred             EEEecCCCCEEEEEeCCC-----eEEEEeCCCCceeccCCCC
Q 006126          608 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~Dg-----~v~iw~~~~~~~~w~~~~~  644 (660)
                      +.+   ++...++|+.||     +|-.||+.+.  +|...++
T Consensus       519 ~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d--~W~~~~~  555 (571)
T KOG4441|consen  519 VVL---GGKLYAVGGFDGNNNLNTVECYDPETD--TWTEVTE  555 (571)
T ss_pred             EEE---CCEEEEEecccCccccceeEEcCCCCC--ceeeCCC
Confidence            222   677888898885     6777877664  5665554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=0.079  Score=59.45  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=76.5

Q ss_pred             CeEEEEEeCCEEEEEe-CCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126          378 SISCFALRGSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG  454 (660)
Q Consensus       378 ~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~  454 (660)
                      .+.+.+.-+..++.|+ .|.+-..|+...-. ...=.....+|++++|+.+| .++.|-.+|.|.+||+..++.++.+..
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            3444444467788888 68888888765311 11112345789999999999 999999999999999999999999887


Q ss_pred             cCCCeEEEE---EeCCCCEEEEEeCCCcEEEEEc
Q 006126          455 HQNRITCLA---YSLSLNVLVSSGADAQLCVWDA  485 (660)
Q Consensus       455 ~~~~v~~l~---~sp~~~~l~s~s~dg~i~vwd~  485 (660)
                      |..+.+++-   +..++..++++...|.  +|.+
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            776666554   4445667777777776  5554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.39  E-value=0.012  Score=40.34  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      +..++|+| ..+++|.++.||.|.++++ +++..|+
T Consensus        14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~   47 (47)
T PF12894_consen   14 VSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS   47 (47)
T ss_pred             EEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence            44999999 7999999999999999999 7777774

>PHA02713 hypothetical protein; Provisional

Probab=96.38  E-value=0.3  Score=53.91  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=90.6

Q ss_pred             CCEEEEEe-C------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceee--
Q 006126          386 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA--  450 (660)
Q Consensus       386 ~~~l~s~~-d------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~--  450 (660)
                      +...+.|+ +      ..+..||+.+......-.-...........-+| ..+.||.++     ++..||..+.+-..  
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            55556665 3      247788987765322111111111112223356 667777654     48889988653221  


Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEeCCC-----------------------cEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSGADA-----------------------QLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                      .+.........+.  -+|+..+.|+.++                       .+..||..+.+=   ..+..+.....   
T Consensus       384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W---~~v~~m~~~r~---  455 (557)
T PHA02713        384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW---ETLPNFWTGTI---  455 (557)
T ss_pred             CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE---eecCCCCcccc---
Confidence            1111111111222  2677777777653                       467788776431   11111111111   


Q ss_pred             CCeEEEEEecCCcEEEEE-ec------CcEEEEeCCC-Ccee--eeecCCCCCCCeEEEEEccCCCEEEEEecCC--eEE
Q 006126          508 TIVNHIQFHPDQIHLLSI-HE------GQIDVYEAPT-LNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVK  575 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~~-~d------~~i~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg--~I~  575 (660)
                       . .+++.. +++..+.| .+      ..+..||..+ .+-.  ..+..  .......++  -+|+..++|+.||  .+.
T Consensus       456 -~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~--~~~~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        456 -R-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLSALHTIL--HDNTIMMLHCYESYMLQD  528 (557)
T ss_pred             -c-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccccceeEE--ECCEEEEEeeecceeehh
Confidence             1 122222 35555543 32      2467899886 4432  22211  122222222  3688888999888  677


Q ss_pred             EEECCCCe
Q 006126          576 VFDTSTLE  583 (660)
Q Consensus       576 iwd~~~~~  583 (660)
                      .||..+.+
T Consensus       529 ~yd~~~~~  536 (557)
T PHA02713        529 TFNVYTYE  536 (557)
T ss_pred             hcCccccc
Confidence            78887765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.37  E-value=1.5  Score=45.28  Aligned_cols=234  Identities=15%  Similarity=0.143  Sum_probs=102.3

Q ss_pred             CCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe---C--
Q 006126          322 SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS---G--  394 (660)
Q Consensus       322 dg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~---d--  394 (660)
                      +.++|+..+- .+.|.|.|+.+.....         ++...-....+...  .+-..+-+.-+.- |+.++++-   +  
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P---------~l~KvIe~~ev~~k--~g~s~PHT~Hclp~G~imIS~lGd~~G~  154 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKP---------RLHKVIEPEEVFEK--TGLSRPHTVHCLPDGRIMISALGDADGN  154 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHH--H-EEEEEEEEE-SS--EEEEEEEETTS-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCC---------ceEeeeCHHHHHhh--cCCCCCceeeecCCccEEEEeccCCCCC
Confidence            4578888884 6899999987654321         12111111000000  0111111111222 55666642   2  


Q ss_pred             --CcEEEEECCCCeEEEEEcCCC---CCeEEEEEcCCC-eEEEEeC--------------------CCeEEEEeCCCCce
Q 006126          395 --GKISIFSLETFQTLATFANPP---PIATYFILLPQD-LFAFGFD--------------------DSSILVHCPCTKKT  448 (660)
Q Consensus       395 --g~I~iwd~~~~~~~~~~~~~~---~~v~~v~~sp~~-~l~s~~~--------------------d~~I~iwd~~~~~~  448 (660)
                        |-+.++|-++.+.........   .--..+.|.|.. .++|...                    ..++.+||+.+.+.
T Consensus       155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~  234 (461)
T PF05694_consen  155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL  234 (461)
T ss_dssp             S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred             CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence              468888988888777765432   233567777866 6665432                    35899999999999


Q ss_pred             eeEeeccC--CCeEEEEEe--CCCCE-EEEEeCCCcEEEEEc-CCCeeeeceeeeeeeecc---------------CCCC
Q 006126          449 KAKLKGHQ--NRITCLAYS--LSLNV-LVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGL---------------VPET  507 (660)
Q Consensus       449 ~~~~~~~~--~~v~~l~~s--p~~~~-l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~---------------~~~~  507 (660)
                      ++++.--.  .....+.|.  |+..+ ++.+.-..+|..|-- ..++-...+.+. +....               .+  
T Consensus       235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v~~~~lp~ml~~~~~~P--  311 (461)
T PF05694_consen  235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKVEGWILPEMLKPFGAVP--  311 (461)
T ss_dssp             EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE--SS---GGGGGG-EE---
T ss_pred             eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCcccCcccccccccccccCC--
Confidence            99886432  234456664  44444 333334455555433 333322222222 21110               01  


Q ss_pred             CCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc---eeeeecCCC--------------CCCCeEEEEEccCCCEEEEE
Q 006126          508 TIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN---HTSQLVPDK--------------MDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~--------------~~~~v~~~~~s~dg~~l~sg  568 (660)
                      .-|+.|.+|.|.++|.++  ..|.|+.||+.+-.   .+.++...+              -.+...-+..|-||+.|+..
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            457899999999999995  78999999997632   222221110              01233567888899888865


Q ss_pred             e
Q 006126          569 C  569 (660)
Q Consensus       569 ~  569 (660)
                      .
T Consensus       392 n  392 (461)
T PF05694_consen  392 N  392 (461)
T ss_dssp             -
T ss_pred             e
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.28  E-value=1.1  Score=50.97  Aligned_cols=187  Identities=12%  Similarity=0.035  Sum_probs=98.2

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe-------------EEEEEcC---CCeEEEEeC----------CCeE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSSI  438 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v-------------~~v~~sp---~~~l~s~~~----------d~~I  438 (660)
                      +..++.++ |+.+.-.|.++|+.+..+... ..|             ..+.-.|   ++.+++|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            44676776 999999999999998776421 111             0111122   335555642          6889


Q ss_pred             EEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126          439 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                      +-+|.++|+.+-.+..-.-.....  -+.+.....++.+. ....+|.+.+..      . +..+..       +..+..
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glv------y-~ptGn~-------~pd~~g  402 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLV------Y-LPMGNQ-------TPDQWG  402 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeE------E-EeCCCc-------cccccC
Confidence            999999999987775311001110  11333222222221 233444444221      1 111111       011111


Q ss_pred             CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCC-------CCeEEEEEcc-CCC---EEEEEecCCeEEEEECCCCeeE
Q 006126          518 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD-------LPITYATYSC-DGK---CIYVSCKSGHVKVFDTSTLELR  585 (660)
Q Consensus       518 ~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~s~-dg~---~l~sg~~dg~I~iwd~~~~~~~  585 (660)
                      ..+.... -..++|.-.|.++|+..-.++.-.|.       ....-+.+.. +|+   .++.++.+|.++++|.++|+.+
T Consensus       403 ~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       403 GDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             CccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            1110001 13456777788888876655442221       1111122322 563   7899999999999999999988


Q ss_pred             EEee
Q 006126          586 CQIN  589 (660)
Q Consensus       586 ~~~~  589 (660)
                      ...+
T Consensus       483 ~~~~  486 (764)
T TIGR03074       483 VPVE  486 (764)
T ss_pred             eece
Confidence            7643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.23  E-value=0.008  Score=55.49  Aligned_cols=108  Identities=11%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC
Q 006126          471 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM  549 (660)
Q Consensus       471 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~  549 (660)
                      +...+.||.|+-++++.....    .+ -..-+.    ..  ...-.-+..+++ +.+|.|++|...-............
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s----~r-se~~~~----e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~  101 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKES----CR-SERFID----EG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE  101 (238)
T ss_pred             hccccCCcccccchhhhhhhh----hh-hhhhhh----cc--eeecccCceEEeecccceEEEecCCccchHHHhhhccc
Confidence            445677888888888762211    11 000011    01  111122445666 5899999998762211111111111


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      ......+.-..++.+.++++.||.||.|++..++.+....
T Consensus       102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen  102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             ccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            1222223333456689999999999999999888776653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.08  E-value=1.3  Score=41.51  Aligned_cols=202  Identities=18%  Similarity=0.184  Sum_probs=108.7

Q ss_pred             CCcEEEEECCCCeEEEE-EcCCCCCeEEEEEc-CCC--eEEEE-eCCCeEEEEeCCC--CceeeEee---c--cCCCeEE
Q 006126          394 GGKISIFSLETFQTLAT-FANPPPIATYFILL-PQD--LFAFG-FDDSSILVHCPCT--KKTKAKLK---G--HQNRITC  461 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~s-p~~--~l~s~-~~d~~I~iwd~~~--~~~~~~~~---~--~~~~v~~  461 (660)
                      .|.|.-||+.+.+..+. +.+..  ..++.+- .++  .++++ +..-.|.-||-..  .....++.   .  ...+.+.
T Consensus        36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND  113 (310)
T KOG4499|consen   36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND  113 (310)
T ss_pred             cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence            57777799887655443 33222  2233332 232  33333 3333455577332  22222211   1  2345666


Q ss_pred             EEEeCCCCEEEEEeC-C---------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCc
Q 006126          462 LAYSLSLNVLVSSGA-D---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQ  529 (660)
Q Consensus       462 l~~sp~~~~l~s~s~-d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~  529 (660)
                      -..+|+|++++ |.. |         |.++.|-...       .+..+. +.-   ..-+.++|+.+.+.+..  +.+-+
T Consensus       114 gkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~-~~v---~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  114 GKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-------QVELIW-NCV---GISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             CccCCCCceee-eeeccccccccccccEEEEeccCC-------Cceeee-hhc---cCCccccccccCcEEEEEccCceE
Confidence            77899999844 332 2         3344443322       111001 111   23346889888887776  46667


Q ss_pred             EEEEe--CCCCce-----eeeecCCC--CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          530 IDVYE--APTLNH-----TSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       530 i~iwd--~~~~~~-----~~~~~~~~--~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      |.-||  ..+|..     +..+....  .....-.+++..+|++.++.-..++|...|..+|+.+..+..+        .
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t  253 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------T  253 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------C
Confidence            76677  545432     22222100  0112234666778888888888899999999999999988764        2


Q ss_pred             cccceEEEEEecCCCCEEE
Q 006126          601 LELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~  619 (660)
                      ..  +++++|--.+-..|.
T Consensus       254 ~q--itsccFgGkn~d~~y  270 (310)
T KOG4499|consen  254 PQ--ITSCCFGGKNLDILY  270 (310)
T ss_pred             Cc--eEEEEecCCCccEEE
Confidence            23  448888653333443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.04  E-value=2.4  Score=44.39  Aligned_cols=85  Identities=9%  Similarity=-0.118  Sum_probs=54.6

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEE-E-------------ecCCC
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA-A-------------HPLEP  615 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~-~-------------sp~d~  615 (660)
                      ...+.+++.+|++++.|+...=|.|.++|+.++..+..++..       .+..+.-+.+. -             .+...
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY-------RdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY-------RDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC-------ccceEEEEEeecccccccccccccCCCCcce
Confidence            456788999999998888766699999999999888877732       12111100000 0             00001


Q ss_pred             CE-EEEEeCCCeEEEEeCCCCceeccC
Q 006126          616 NR-IALGLTNGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       616 ~~-l~s~s~Dg~v~iw~~~~~~~~w~~  641 (660)
                      .+ ++-+-.-|.|-||.+..|......
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence            12 334556799999999999775443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.91  E-value=1  Score=47.11  Aligned_cols=205  Identities=13%  Similarity=0.101  Sum_probs=111.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          426 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       426 ~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      ++.++.+..+|.|.-.|..++..+.....-  ...+.+-.+..+|+ ++.++.++.+..+|.++|+......... .   
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---  142 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S---  142 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C---
Confidence            446666678888888888888765332211  12223323333665 7778889999999998877655444441 0   


Q ss_pred             CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEccCCCEEEEEec--CCeEEEEECC
Q 006126          504 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK--SGHVKVFDTS  580 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~sg~~--dg~I~iwd~~  580 (660)
                       .   .+..-..-.++..+..+.++.+.-.|..+|+..-.+.... -...+...-. .....++.+..  ++.+.-.|..
T Consensus       143 -~---~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         143 -P---YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAE  217 (370)
T ss_pred             -e---EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEcc
Confidence             0   1222223334433333456777777777777654432211 0111111111 22344555555  6678888888


Q ss_pred             CCeeEEEeecccccCCCCc--CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          581 TLELRCQINLTAYAQPGTI--SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~--~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      +|.................  ...+....+..   + .-+..++.+|.+.-.+..+++.+|....+
T Consensus       218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v---~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV---D-GGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             CCcEeeeeeeecccCcccccccccccCceEEE---C-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            8988877542211110000  00111111111   1 23466777888999999999999988876

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.84  E-value=0.8  Score=50.56  Aligned_cols=194  Identities=15%  Similarity=0.093  Sum_probs=100.7

Q ss_pred             CeEEEEEe-CCEEEEEe-C-C-----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeC
Q 006126          378 SISCFALR-GSHLFSAS-G-G-----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCP  443 (660)
Q Consensus       378 ~v~~v~~s-~~~l~s~~-d-g-----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~  443 (660)
                      ...+++.. +...++|+ | |     .+..||..+.+-...-.-.......-...-+| ..++||.||     +|-.||.
T Consensus       324 ~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  324 CRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             ccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence            34455555 66667777 7 3     58888988776433111111111111122356 888999887     5888888


Q ss_pred             CCCceeeEeeccCCCeEEEE-EeCCCCEEEEEeCCC------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126          444 CTKKTKAKLKGHQNRITCLA-YSLSLNVLVSSGADA------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  516 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~-~sp~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  516 (660)
                      .+.+--..-. ......+.. ..-+|...++|+.++      ++..||..+..-....++.+...        -..++.-
T Consensus       404 ~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--------~~g~a~~  474 (571)
T KOG4441|consen  404 VTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--------GFGVAVL  474 (571)
T ss_pred             CCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc--------cceEEEE
Confidence            7654221111 111222221 222688888888654      57788888754222222221111        1123333


Q ss_pred             cCCcEEEE-EecC-----cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCe
Q 006126          517 PDQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE  583 (660)
Q Consensus       517 p~~~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~  583 (660)
                       ++...++ |.|+     +|..||..+.+....-........+-.+.  -+++..++|+.||     +|..||..+.+
T Consensus       475 -~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  475 -NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             -CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence             3555555 5554     37889988766543321111122222222  3566777787775     57777777654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=0.035  Score=62.13  Aligned_cols=105  Identities=14%  Similarity=0.206  Sum_probs=73.3

Q ss_pred             CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCC
Q 006126          519 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG  597 (660)
Q Consensus       519 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~g  597 (660)
                      +..++.| ..|.+-..|+.. ..-.-..+....++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+     |
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~  172 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G  172 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence            4455665 667888888743 22212222234789999999999999999999999999999999999888754     3


Q ss_pred             CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +  ....++-+.+.. ++..+.++..-|.  +|+..-
T Consensus       173 a--p~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  173 A--PVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             C--ccceEEEEEEeC-CCcEEEEccCCCc--eEEEEe
Confidence            2  223344666666 4566777766665  666543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.82  E-value=3  Score=43.68  Aligned_cols=82  Identities=10%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-----------------CC
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-----------------DQ  519 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----------------~~  519 (660)
                      ..+.++..+|++++.++...-|.|.++|+.++..+     + +..|..+  ..+.-+....                 ..
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-----r-mWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-----R-MWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-----h-hhccCcc--ceEEEEEeecccccccccccccCCCCcce
Confidence            45778999999998888877799999999985432     2 2333321  1111111111                 12


Q ss_pred             cEEEE-E-ecCcEEEEeCCCCceeeeecC
Q 006126          520 IHLLS-I-HEGQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       520 ~~l~~-~-~d~~i~iwd~~~~~~~~~~~~  546 (660)
                      .+|+. . .-|.|.||++++|..+..+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            34444 4 789999999999888877754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.59  E-value=0.31  Score=54.75  Aligned_cols=91  Identities=11%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCC----------Ce--eEEE-eecccccCCCCcCcccceEEEEEecC--C
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LE--LRCQ-INLTAYAQPGTISLELYPLVIAAHPL--E  614 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~----------~~--~~~~-~~~~~~~~~gh~~~~v~~~~v~~sp~--d  614 (660)
                      ...|..+.++|+|++|+..|..|.+ |-.+..          |+  ..+. +.........  .....+..+.|||.  +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--NSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccC--CCCceEEEEEEcCCCCC
Confidence            4568889999999999998887644 333321          11  1221 1111111111  22345669999994  2


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeccCCC
Q 006126          615 PNRIALGLTNGRVHVIEPLESEVEWGKLP  643 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~  643 (660)
                      +..|+.-..|+++|+||+......|....
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            47888999999999999987665554433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.57  E-value=1.6  Score=41.86  Aligned_cols=201  Identities=11%  Similarity=0.003  Sum_probs=130.7

Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126          418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      -..++-.||| .-+++...+.|--.|..+|+....--+....-..|..-|||..-++-+.. .|.-.|-++.+... .+ 
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-f~-  140 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-FP-  140 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-ee-
Confidence            3467888999 88888888999999999998877666666777788899999877664433 56666766644221 22 


Q ss_pred             eeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 006126          497 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV  576 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~i  576 (660)
                        +...|.+  .......|.+.|..-.++..|.---.|..+ ..+.++... ....-+.+|..|||...++.-.++.|-.
T Consensus       141 --lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar  214 (353)
T COG4257         141 --LPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR  214 (353)
T ss_pred             --cccccCC--CcccceeeCCCccEEEeeccccceecCccc-CceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence              2333433  567889999999988885443222223221 223333332 2555678899999999999888888888


Q ss_pred             EECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          577 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .|..++. -.++....-.-.|     ..  .+--+| -+..-+|-...+.+.-+|+....
T Consensus       215 idp~~~~-aev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         215 IDPFAGH-AEVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             cccccCC-cceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence            8888873 3333322111011     11  333345 57777777777888888876654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.53  E-value=5.7  Score=44.99  Aligned_cols=312  Identities=12%  Similarity=0.064  Sum_probs=169.6

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceee---eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT---LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .|--|+.+|.++..||.+.-+-+...  ++....   ..|    -+.++.-=.|+..++.-+.+..|.-..+|.-...  
T Consensus       590 ~~e~d~~yLlvalgdG~l~~fv~d~~--tg~lsd~Kk~~l----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--  661 (1096)
T KOG1897|consen  590 TFEGDIHYLLVALGDGALLYFVLDIN--TGQLSDRKKVTL----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK--  661 (1096)
T ss_pred             EeeccceEEEEEcCCceEEEEEEEcc--cceEcccccccc----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc--
Confidence            55566889999999999877665531  122111   111    2456666667665544344444544444432111  


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEE-EEEe----CCEEEEEeCCcEEEEECCCCeE--EEEEcCCCCCe
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR----GSHLFSASGGKISIFSLETFQT--LATFANPPPIA  418 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s----~~~l~s~~dg~I~iwd~~~~~~--~~~~~~~~~~v  418 (660)
                                 .++.+-+-            ..+.. +.|+    ...++++..+.+++.-++.-+.  ++++. -....
T Consensus       662 -----------Lv~spls~------------kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~p  717 (1096)
T KOG1897|consen  662 -----------LVYSPLSL------------KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESP  717 (1096)
T ss_pred             -----------EEEeccch------------HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCCh
Confidence                       11111110            01111 1222    5567777777777776654222  23322 22334


Q ss_pred             EEEEEcCCC-eEEEEeCC--------------CeEEEEeCCCCceeeEeec----cCCCeEEEEEeCC-CCEEEEEeC--
Q 006126          419 TYFILLPQD-LFAFGFDD--------------SSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSGA--  476 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d--------------~~I~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~-~~~l~s~s~--  476 (660)
                      ..+++.+.. .+.+.+..              ..++++|-++.+.+...+-    ....+.++.|..| +.++++|+.  
T Consensus       718 rrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v  797 (1096)
T KOG1897|consen  718 RRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLV  797 (1096)
T ss_pred             hheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEee
Confidence            456666644 33333221              1467777776655443221    1124555668777 777777753  


Q ss_pred             --------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC
Q 006126          477 --------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK  548 (660)
Q Consensus       477 --------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~  548 (660)
                              .|.|.+|.+..+..+  ..+.   +....  +.+.++..- +|++ +++-+..|++|+..+.+.++.-.  .
T Consensus       798 ~Pde~ep~~GRIivfe~~e~~~L--~~v~---e~~v~--Gav~aL~~f-ngkl-lA~In~~vrLye~t~~~eLr~e~--~  866 (1096)
T KOG1897|consen  798 YPDENEPVNGRIIVFEFEELNSL--ELVA---ETVVK--GAVYALVEF-NGKL-LAGINQSVRLYEWTTERELRIEC--N  866 (1096)
T ss_pred             ccCCCCcccceEEEEEEecCCce--eeee---eeeec--cceeehhhh-CCeE-EEecCcEEEEEEccccceehhhh--c
Confidence                    477888877662211  1111   00000  345554333 3444 44566789999998876655432  2


Q ss_pred             CCCCeEEEEEccCCCEEEEEecCCeEEEEE--CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe
Q 006126          549 MDLPITYATYSCDGKCIYVSCKSGHVKVFD--TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR  626 (660)
Q Consensus       549 ~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd--~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~  626 (660)
                      +..++..+...-.|+.+++|.--+.+.+-.  ...|.....-..         -.+-|.+++.+-.  +..++.+..+|.
T Consensus       867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD---------~~p~Wmtaveil~--~d~ylgae~~gN  935 (1096)
T KOG1897|consen  867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD---------YNPNWMTAVEILD--DDTYLGAENSGN  935 (1096)
T ss_pred             ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh---------hCccceeeEEEec--CceEEeeccccc
Confidence            578888999999999999998877776644  444444443221         2234444666544  456667778888


Q ss_pred             EEEEeCCC
Q 006126          627 VHVIEPLE  634 (660)
Q Consensus       627 v~iw~~~~  634 (660)
                      +++-..++
T Consensus       936 lf~v~~d~  943 (1096)
T KOG1897|consen  936 LFTVRKDS  943 (1096)
T ss_pred             EEEEEecC
Confidence            88876654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.49  E-value=0.04  Score=37.76  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL  584 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~  584 (660)
                      ...|..++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            567999999999999999999999999999 5543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.36  E-value=0.73  Score=50.49  Aligned_cols=113  Identities=10%  Similarity=0.046  Sum_probs=74.7

Q ss_pred             eEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc--cCCCEEEEEecCCeEEEEECC------
Q 006126          510 VNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTS------  580 (660)
Q Consensus       510 v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~sg~~dg~I~iwd~~------  580 (660)
                      +.-+.-+.-++..++. ...++.|||.+.+.....-.. .....|.++.|.  |||+.+++.|-.+.|.+|--.      
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            3344455555555554 556899999988775444332 237889999996  899999999999999998532      


Q ss_pred             ---CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          581 ---TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       581 ---~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                         +...+..+...     .++.+++.  +..|.+ +|..++.+  ++.+.|++-.
T Consensus       111 ~~p~w~~i~~i~i~-----~~T~h~Ig--ds~Wl~-~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDIS-----SHTPHPIG--DSIWLK-DGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEee-----cCCCCCcc--ceeEec-CCeEEEEe--CCEEEEECCC
Confidence               22333444332     34456666  899999 77655544  3568888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=0.05  Score=53.72  Aligned_cols=80  Identities=14%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhhhcccc--------ccHHHHHHHHhcCchHhHHHhhhh----hcCCCCCcchhhh
Q 006126           65 KEELIYLIHQFLNEEEFKETLHKLEQETRVF--------FDINYFREYITSGEWDNAEKYLSA----FTNMNDNTYSAKM  132 (660)
Q Consensus        65 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~--------~~~~~l~~~i~~G~w~~~~~~l~~----~~~~~~~~~~~~~  132 (660)
                      ++-+.|+|..||.-+||-.+|..|-++|.+.        .++..+++++++|+...|+.-.+.    |+.    ..+.-.
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK----~~S~lE  190 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK----EESSLE  190 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh----ccchhh
Confidence            8889999999999999999999999999986        247888999999998888876532    211    112223


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 006126          133 FSQIQRQKYLEAVDRQQ  149 (660)
Q Consensus       133 ~~~i~~q~~lell~~~e  149 (660)
                      | ++.-|.|+||+..++
T Consensus       191 f-~lRlQefIELi~~~~  206 (389)
T KOG0396|consen  191 F-QLRLQEFIELIKVDN  206 (389)
T ss_pred             h-HHHHHHHHHHHHhcc
Confidence            3 489999999999883

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.29  E-value=4.3  Score=45.88  Aligned_cols=72  Identities=17%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC---------Cce---eeEe--------eccCCCeEEEEEeCC---CCEE
Q 006126          416 PIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKT---KAKL--------KGHQNRITCLAYSLS---LNVL  471 (660)
Q Consensus       416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~---------~~~---~~~~--------~~~~~~v~~l~~sp~---~~~l  471 (660)
                      -.|..+.++|+| .++..|..|.+.+.=.+.         |+.   .+++        ..+...|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            357889999999 888777766443332221         111   1111        123457788889885   4788


Q ss_pred             EEEeCCCcEEEEEcCC
Q 006126          472 VSSGADAQLCVWDAVG  487 (660)
Q Consensus       472 ~s~s~dg~i~vwd~~~  487 (660)
                      ++-+.|+++|+||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            8888899999998864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=1.3  Score=40.68  Aligned_cols=180  Identities=13%  Similarity=0.056  Sum_probs=100.7

Q ss_pred             EEEEe-CCEEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEE--EEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126          381 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATY--FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG  454 (660)
Q Consensus       381 ~v~~s-~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~--v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~  454 (660)
                      .+.+. |.++.+.+   ...|++||+.+|+.+..-.-....+..  +.-..|..-.-.-.+|.-..+|.++-+++..+. 
T Consensus        50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-  128 (262)
T COG3823          50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-  128 (262)
T ss_pred             ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence            34445 65666666   368999999999887665422212211  111122222233467888899988887776664 


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEE
Q 006126          455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY  533 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iw  533 (660)
                      ..+.=+.++  .|++.|+.++...+++.-|.++........+.  ..+..-  ..++.+.|- +|...+- -.+..|...
T Consensus       129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT--~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI  201 (262)
T COG3823         129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVT--DDGVPV--SKLNELEWV-DGELYANVWQTTRIARI  201 (262)
T ss_pred             cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEE--ECCeec--ccccceeee-ccEEEEeeeeecceEEE
Confidence            333444443  36666777766677877777764333222221  222110  223344444 4544443 356667777


Q ss_pred             eCCCCceeeeecCC----------CCCCCeEEEEEccCC-CEEEEE
Q 006126          534 EAPTLNHTSQLVPD----------KMDLPITYATYSCDG-KCIYVS  568 (660)
Q Consensus       534 d~~~~~~~~~~~~~----------~~~~~v~~~~~s~dg-~~l~sg  568 (660)
                      |..+|+.+..+...          .+....+.+++.|++ +++++|
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            77777766554321          134567789999887 455554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.17  E-value=0.93  Score=48.15  Aligned_cols=145  Identities=8%  Similarity=-0.020  Sum_probs=89.2

Q ss_pred             CCeEEEEEe-CCEEEEEe----CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-----eEEEEeCCCeEEEEeCCC-
Q 006126          377 DSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT-  445 (660)
Q Consensus       377 ~~v~~v~~s-~~~l~s~~----dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-----~l~s~~~d~~I~iwd~~~-  445 (660)
                      .++..++|. |+.++-..    +|.+++=|-   +.+    +.-..|..+.|.|-+     .+++.--.+.|.||.+.. 
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            568899999 77655433    355544332   222    333457889999864     566666788999998752 


Q ss_pred             ----CceeeEeec-c--CC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126          446 ----KKTKAKLKG-H--QN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  516 (660)
Q Consensus       446 ----~~~~~~~~~-~--~~--~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  516 (660)
                          ++.+..-.. .  .-  --..+.|+|....|++-.....=.+++++....    .++.-..++    +.|.|.+|.
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s----rVkaDi~~~----G~IhCACWT  164 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS----RVKADIKTS----GLIHCACWT  164 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc----eEEEeccCC----ceEEEEEec
Confidence                222222111 1  11  123567999998888777665555677665321    122111222    689999999


Q ss_pred             cCCcEEEEE--ecCcEEEEeCC
Q 006126          517 PDQIHLLSI--HEGQIDVYEAP  536 (660)
Q Consensus       517 p~~~~l~~~--~d~~i~iwd~~  536 (660)
                      +||+.|+++  ..=.-++||-.
T Consensus       165 ~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  165 KDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CcCCEEEEEeCCeEEEEEecCc
Confidence            999999885  43457889853

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.16  E-value=0.73  Score=50.50  Aligned_cols=116  Identities=8%  Similarity=0.063  Sum_probs=72.7

Q ss_pred             CeEEEEEcCCCeEE-EEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEe--CCCCEEEEEeCCCcEEEEEcCCCe---
Q 006126          417 IATYFILLPQDLFA-FGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWK---  489 (660)
Q Consensus       417 ~v~~v~~sp~~~l~-s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s--p~~~~l~s~s~dg~i~vwd~~~~~---  489 (660)
                      ...-+.-+.-+.++ +.+....+.|||.+.+.....-. ...+.|.++.|.  |+|+.+++.+..+.|.+|.-....   
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            33444444555333 33444589999999876443222 346789999984  689999999999999998542111   


Q ss_pred             -eeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126          490 -KLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  535 (660)
Q Consensus       490 -~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~  535 (660)
                       .....++..+ ...+++  .+|.+..|.++|..++ +.++.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence             0011122211 234554  6789999999986554 45667888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=1.1  Score=41.08  Aligned_cols=181  Identities=12%  Similarity=0.035  Sum_probs=99.7

Q ss_pred             CC-eEEEEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          426 QD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       426 ~~-~l~s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      +| ++.+.+.-|  .|++||+.+|+.+..-.-....+..=-...-|..+. -.-.+|.-..+|.++-+........    
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~----  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE----  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC----
Confidence            44 566655443  799999999987754432211221111111123322 2345777888998885443332222    


Q ss_pred             ccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeE---EEEEccCCCEEEEEecCCeEEEE
Q 006126          502 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT---YATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       502 ~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~---~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                            +.-..+  ..|++.|+.+ ...+++.-|.++.....++.......+|.   -+.| -||...|-.-.+..|...
T Consensus       131 ------GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI  201 (262)
T COG3823         131 ------GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARI  201 (262)
T ss_pred             ------Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEE
Confidence                  233333  3455556554 55567777776655444443322233333   3444 356666655556678888


Q ss_pred             ECCCCeeEEEeeccccc----CCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          578 DTSTLELRCQINLTAYA----QPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       578 d~~~~~~~~~~~~~~~~----~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      |..+|+.+..+..+...    ..+.+.+..+  .+++.|+.+++++||
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEec
Confidence            89999988887754322    2222233444  899999544666666

>PHA03098 kelch-like protein; Provisional

Probab=95.11  E-value=1.5  Score=48.35  Aligned_cols=183  Identities=11%  Similarity=0.045  Sum_probs=87.8

Q ss_pred             CCEEEEEe-CC------cEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCceee
Q 006126          386 GSHLFSAS-GG------KISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKA  450 (660)
Q Consensus       386 ~~~l~s~~-dg------~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~~~  450 (660)
                      +..++.|+ ++      .+..||..+.+....-..  .......+  .-++ .++.||.+     ..+..||..+++-..
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            55555555 32      577888887665322111  11112222  2356 66777765     257788887654321


Q ss_pred             --EeeccCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          451 --KLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       451 --~~~~~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                        .+. +...-.+++ .-+++..+.|+.+      ..+..||..+.+-.   .+...+.+..     -.+++. .++...
T Consensus       373 ~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~-----~~~~~~-~~~~iy  441 (534)
T PHA03098        373 EPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS---KGSPLPISHY-----GGCAIY-HDGKIY  441 (534)
T ss_pred             CCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee---ecCCCCcccc-----CceEEE-ECCEEE
Confidence              111 111111222 2356777777732      35788998764321   1111111111     112222 345555


Q ss_pred             EEE-ec--------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCe
Q 006126          523 LSI-HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE  583 (660)
Q Consensus       523 ~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~  583 (660)
                      +.| .+        ..+.+||..+.+-...-...........+.  .+++.++.|+.+     +.|.+||..+.+
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            553 22        238899988765432211110011111222  367777777754     468888887764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.06  E-value=1.8  Score=42.39  Aligned_cols=150  Identities=19%  Similarity=0.075  Sum_probs=83.7

Q ss_pred             CeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEE
Q 006126          458 RITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY  533 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iw  533 (660)
                      .+.+.+++++++.++...   ....++++......       .....+     ..+....|++++...++. .+...+++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-------~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~~~~~~   92 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-------RPVLTG-----GSLTRPSWDPDGWVWTVDDGSGGVRVV   92 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-------eeeccC-----CccccccccCCCCEEEEEcCCCceEEE
Confidence            688899999999887766   23446666544311       111122     357788999998777763 44555555


Q ss_pred             -eCCCCceee-eecCCCCCCCeEEEEEccCCCEEEEEe---cCCeEEEEECC---CCeeEEEeecccccCCCCcCcccce
Q 006126          534 -EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYP  605 (660)
Q Consensus       534 -d~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~---~dg~I~iwd~~---~~~~~~~~~~~~~~~~gh~~~~v~~  605 (660)
                       +..++.... ..........|..+.+||||..++...   .++.|++=-+.   .+.......+.....    .....+
T Consensus        93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~----~~~~~v  168 (253)
T PF10647_consen   93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP----PLLSDV  168 (253)
T ss_pred             EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc----cccCcc
Confidence             333333221 121111122899999999999888655   35777776543   231111111111110    111234


Q ss_pred             EEEEEecCCCCEEEEEeCC
Q 006126          606 LVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       606 ~~v~~sp~d~~~l~s~s~D  624 (660)
                      ..++|.+ ++.+++.+...
T Consensus       169 ~~v~W~~-~~~L~V~~~~~  186 (253)
T PF10647_consen  169 TDVAWSD-DSTLVVLGRSA  186 (253)
T ss_pred             eeeeecC-CCEEEEEeCCC
Confidence            5999999 66666655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=0.55  Score=53.36  Aligned_cols=152  Identities=13%  Similarity=0.096  Sum_probs=91.3

Q ss_pred             CCeEEEEEeCCCCEEEEE--eCCCcEEEEEcCCCeeee---ceeeeeeeec-cCCCCCCeEEEEEecCCcEEEE--EecC
Q 006126          457 NRITCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLC---SKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS--IHEG  528 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~--s~dg~i~vwd~~~~~~~~---~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~--~~d~  528 (660)
                      ..+..+...+|+...++.  +.+-.|..||+++.....   ..++.....+ ..+  ....++.|.|.-....+  ..|+
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~--vf~~~~~wnP~vp~n~av~l~dl  178 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKP--VFQLKNVWNPLVPLNSAVDLSDL  178 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccc--cccccccccCCccchhhhhcccc
Confidence            355566667787665443  334478999998744322   1111100000 011  35667888886544333  4888


Q ss_pred             cEEEEeCCCCce-eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126          529 QIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       529 ~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      .|++.-+..... +..+.   .....++++|+|.|+.++.|-..|++.-|... ++....+......      ....+++
T Consensus       179 sl~V~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~------e~yrvl~  248 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE------ENYRVLS  248 (1405)
T ss_pred             chhhhhhhhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC------CCcceeE
Confidence            888887753322 22222   36788999999999999999999999888754 3434444322211      1355779


Q ss_pred             EEEecCCCCEEEEE
Q 006126          608 IAAHPLEPNRIALG  621 (660)
Q Consensus       608 v~~sp~d~~~l~s~  621 (660)
                      |.|-. ...++++-
T Consensus       249 v~Wl~-t~eflvvy  261 (1405)
T KOG3630|consen  249 VTWLS-TQEFLVVY  261 (1405)
T ss_pred             EEEec-ceeEEEEe
Confidence            99987 45565543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.79  E-value=0.095  Score=48.62  Aligned_cols=102  Identities=16%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             CCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEE-EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeE
Q 006126          386 GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFI-LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT  460 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~-~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~  460 (660)
                      +..+++|. +|.|.+|...-. .....+......|.++. --.++ +..+++.||.|+.|++.-++.+.....|+ .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            56677777 999999987621 11111122223333322 23344 78899999999999999888777766676 4444


Q ss_pred             EEEEeCCCCEEEEE--eCCCcEEEEEcCC
Q 006126          461 CLAYSLSLNVLVSS--GADAQLCVWDAVG  487 (660)
Q Consensus       461 ~l~~sp~~~~l~s~--s~dg~i~vwd~~~  487 (660)
                      ....+..++++.++  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            44455555566665  6666666666654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.71  E-value=1.1  Score=46.74  Aligned_cols=150  Identities=8%  Similarity=0.040  Sum_probs=80.0

Q ss_pred             CCeEEEEEeCCCCEEEEEe-----------CCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          457 NRITCLAYSLSLNVLVSSG-----------ADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      .....|+|.++|+.+++-.           ..+ .|.+++-..+.... .... .+....   .....+++.++| .+++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-d~~~-vfa~~l---~~p~Gi~~~~~G-lyV~   87 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-DKSN-VFAEEL---SMVTGLAVAVGG-VYVA   87 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-ceeE-EeecCC---CCccceeEecCC-EEEe
Confidence            3456788999998777643           223 67777654322111 1111 121111   346789999999 4444


Q ss_pred             EecCcEEEE-eCCCC-----ce--e-eeecCCC--CCCCeEEEEEccCCCEEEEEecC-------------------CeE
Q 006126          525 IHEGQIDVY-EAPTL-----NH--T-SQLVPDK--MDLPITYATYSCDGKCIYVSCKS-------------------GHV  574 (660)
Q Consensus       525 ~~d~~i~iw-d~~~~-----~~--~-~~~~~~~--~~~~v~~~~~s~dg~~l~sg~~d-------------------g~I  574 (660)
                      . ...|..| |....     +.  + ..+....  +......++|.|||.+.++-+..                   |.|
T Consensus        88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence            3 3345544 54211     11  1 1122110  13447789999999876654421                   446


Q ss_pred             EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC
Q 006126          575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG  625 (660)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg  625 (660)
                      .-++..+++.. .+.      .|+    .+...++|+| +|+++++-..++
T Consensus       167 ~r~~pdg~~~e-~~a------~G~----rnp~Gl~~d~-~G~l~~tdn~~~  205 (367)
T TIGR02604       167 FRYNPDGGKLR-VVA------HGF----QNPYGHSVDS-WGDVFFCDNDDP  205 (367)
T ss_pred             EEEecCCCeEE-EEe------cCc----CCCccceECC-CCCEEEEccCCC
Confidence            66666655432 221      132    2234899999 798887755443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=4.1  Score=44.71  Aligned_cols=171  Identities=10%  Similarity=0.101  Sum_probs=86.7

Q ss_pred             CeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEE--E--cCCCCCeEEEEEcCCC-eEEEEeCCCeEE-EEeCCCCcee
Q 006126          378 SISCFALR-GSHLFSAS-GGKISIFSLETFQTLAT--F--ANPPPIATYFILLPQD-LFAFGFDDSSIL-VHCPCTKKTK  449 (660)
Q Consensus       378 ~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~--~--~~~~~~v~~v~~sp~~-~l~s~~~d~~I~-iwd~~~~~~~  449 (660)
                      .+-.+.|+ ...|++.. +|++.+|++.. +.+..  .  ......|..+.+..+| .+.+.  +|.+. +-+... ..+
T Consensus        85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~-~~~  160 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEE-PKL  160 (829)
T ss_pred             CeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCc-chh
Confidence            77889999 77777777 99999999863 33222  1  2233446666666677 44333  33333 333332 122


Q ss_pred             eEeec---cCCCeEEEEEeCCCCEE-EEEeCCCcE--EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          450 AKLKG---HQNRITCLAYSLSLNVL-VSSGADAQL--CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       450 ~~~~~---~~~~v~~l~~sp~~~~l-~s~s~dg~i--~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                      .++..   ....-+|-...+++... .....+-.+  .++-.....    .....+...+    +.+..+..||+.++|+
T Consensus       161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~----~q~~~~~~~~----~~~~ki~VS~n~~~la  232 (829)
T KOG2280|consen  161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR----VQLHALSWPN----SSVVKISVSPNRRFLA  232 (829)
T ss_pred             hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc----ccccccCCCC----ceEEEEEEcCCcceEE
Confidence            22322   11111232222222111 111111000  111111110    1111122222    4688899999999999


Q ss_pred             E-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126          524 S-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       524 ~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      - ..+|.|.+-+....++...+....|. +.-.++|..+
T Consensus       233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn  270 (829)
T KOG2280|consen  233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN  270 (829)
T ss_pred             EEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence            8 78899999988777766666543322 2225666533

>PRK10115 protease 2; Provisional

Probab=94.67  E-value=10  Score=43.18  Aligned_cols=237  Identities=13%  Similarity=0.049  Sum_probs=116.1

Q ss_pred             eEEEEEe--CCEEEEEeC--C----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-C-----CeEEEEeC
Q 006126          379 ISCFALR--GSHLFSASG--G----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-----SSILVHCP  443 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~d--g----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d-----~~I~iwd~  443 (660)
                      +..+.++  +++|+.+.|  |    .|++.|+.+|..+.......  -..++|.+|+ .|+.... +     ..|+.+++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            5556677  777776652  3    68899998886432221111  1468999998 4444332 2     36888899


Q ss_pred             CCC--ceeeEeeccCCCeE-EEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126          444 CTK--KTKAKLKGHQNRIT-CLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       444 ~~~--~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                      .++  +....+........ .+..+.++++++..+.   ++.+.+++....... ...+.  ....    .....+. +.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~----~~~~~~~-~~  278 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFL--PRRK----DHEYSLD-HY  278 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEE--ECCC----CCEEEEE-eC
Confidence            887  33444543333333 3333448887665443   357888885331100 01111  1111    1222222 33


Q ss_pred             CCcEEEEEe-c---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE--EECCCCeeEEEeecc
Q 006126          518 DQIHLLSIH-E---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--FDTSTLELRCQINLT  591 (660)
Q Consensus       518 ~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~i--wd~~~~~~~~~~~~~  591 (660)
                      .+.+.+... +   ..|...++.+......+........+..+.+. .+.++++...+|.-++  ++..++. ...+...
T Consensus       279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~  356 (686)
T PRK10115        279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFD  356 (686)
T ss_pred             CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCC
Confidence            333333332 1   23444455421122233332223467778887 3345556666766544  4544333 3333210


Q ss_pred             cccCCCCcCcccceEEEEEe--cCCCCEEEEEeC---CCeEEEEeCCCCc
Q 006126          592 AYAQPGTISLELYPLVIAAH--PLEPNRIALGLT---NGRVHVIEPLESE  636 (660)
Q Consensus       592 ~~~~~gh~~~~v~~~~v~~s--p~d~~~l~s~s~---Dg~v~iw~~~~~~  636 (660)
                           +    +..+..+.++  ++++.++++.+.   -+.+..+|+.+++
T Consensus       357 -----~----~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        357 -----D----PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             -----C----CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence                 0    1111233344  322345544443   3678888887765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.49  E-value=5.3  Score=39.12  Aligned_cols=146  Identities=12%  Similarity=0.030  Sum_probs=87.2

Q ss_pred             CeEEEEEcCCC-eEEEEe---CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCCeee
Q 006126          417 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL  491 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~~---~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd-~~~~~~~  491 (660)
                      .+.+.++++++ .++...   ....++++...  .....+. ....+....|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            67889999999 555544   33356666543  3222221 223677888999988777777667767763 3332211


Q ss_pred             eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCC---CCceee-----eecCCCCCCCeEEEEEc
Q 006126          492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP---TLNHTS-----QLVPDKMDLPITYATYS  559 (660)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~---~~~~~~-----~~~~~~~~~~v~~~~~s  559 (660)
                       ...+.   .....  +.|..+.+||||..++. .   .++.|.+--+.   .+....     .+.. .....++.++|.
T Consensus       102 -~~~v~---~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~  174 (253)
T PF10647_consen  102 -PVEVD---WPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWS  174 (253)
T ss_pred             -eEEec---ccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeec
Confidence             11111   11110  26999999999999987 3   25677776543   221110     1111 125678999999


Q ss_pred             cCCCEEEEEecCC
Q 006126          560 CDGKCIYVSCKSG  572 (660)
Q Consensus       560 ~dg~~l~sg~~dg  572 (660)
                      +++.+++.+...+
T Consensus       175 ~~~~L~V~~~~~~  187 (253)
T PF10647_consen  175 DDSTLVVLGRSAG  187 (253)
T ss_pred             CCCEEEEEeCCCC
Confidence            9998888766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.48  E-value=5.2  Score=39.04  Aligned_cols=177  Identities=10%  Similarity=0.084  Sum_probs=104.8

Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126          412 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       412 ~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      .+-...+.++.|+|+. .|++..+...-.|+=...|+.+.++.-. -...-.+.+..+|.+.++--.++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3445568999999999 6666666666666655678888876431 2234467788888888877778888888776653


Q ss_pred             eeeceeeeeeeeccCCC-CCCeEEEEEecCCcEEEEEec-CcEEEEeCCCCc-ee--eeecCCC-----CCCCeEEEEEc
Q 006126          490 KLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLSIHE-GQIDVYEAPTLN-HT--SQLVPDK-----MDLPITYATYS  559 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~d-~~i~iwd~~~~~-~~--~~~~~~~-----~~~~v~~~~~s  559 (660)
                      .........+.-+..+. ....-.++|.|....+.+..+ +=+.||.+.... .+  .......     .-..|.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            22111110111111100 146778999999888888743 445555443221 11  1100000     02346677887


Q ss_pred             c-CCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          560 C-DGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       560 ~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      + .+..++-+.+++.+.-.|.. |+.+..+.
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence            5 56677777777888777766 44455544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.31  E-value=1.6  Score=46.49  Aligned_cols=156  Identities=12%  Similarity=0.102  Sum_probs=86.8

Q ss_pred             CeEEEEEcCCC-eEEEEe--CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC----CCEEEEEeCCCcEEEEEcCCCe
Q 006126          417 IATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LNVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~~--~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      ++..++|.... .+++.-  .+|.+++=|   ...+..|+    .|..+.|.|-    -..+++......|.+|-+....
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            56678886443 444432  233333332   12344443    5889999984    3356666778899999986321


Q ss_pred             eeeceeee-eeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126          490 KLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCI  565 (660)
Q Consensus       490 ~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l  565 (660)
                      ....+.+. ..-+-..+.+--...+.|+|....|++ .....-.+++++..  +....+.   ..+.|.|.||.+||+.|
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcCCEE
Confidence            11111111 011100010012335789999998887 43333345555432  2333342   37889999999999987


Q ss_pred             EEEecC-CeEEEEECCCC
Q 006126          566 YVSCKS-GHVKVFDTSTL  582 (660)
Q Consensus       566 ~sg~~d-g~I~iwd~~~~  582 (660)
                      +.+-.. =.-+|||-...
T Consensus       171 VVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEEeCCeEEEEEecCchh
Confidence            765433 35678986544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.29  E-value=5.6  Score=41.30  Aligned_cols=201  Identities=13%  Similarity=0.084  Sum_probs=93.2

Q ss_pred             eEEEEe-CCCeEEEEeCCCC----ceeeEeec---cC----CCeEEEEEeCCCCEEEEEe--CC----CcEEEEEcCCCe
Q 006126          428 LFAFGF-DDSSILVHCPCTK----KTKAKLKG---HQ----NRITCLAYSLSLNVLVSSG--AD----AQLCVWDAVGWK  489 (660)
Q Consensus       428 ~l~s~~-~d~~I~iwd~~~~----~~~~~~~~---~~----~~v~~l~~sp~~~~l~s~s--~d----g~i~vwd~~~~~  489 (660)
                      +|+..+ ..+.|+|.|+.+.    +..++++.   +.    .....+..-|+|+.++++-  .+    |.+.+.|-++.+
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~  168 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE  168 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence            555555 7779999998743    33444432   11    2233445568898888743  22    457888888754


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe---------------------cCcEEEEeCCCCceeeeecCCC
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---------------------EGQIDVYEAPTLNHTSQLVPDK  548 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---------------------d~~i~iwd~~~~~~~~~~~~~~  548 (660)
                      ........   .+..   ..-..+-+.|..+.++++.                     ..++.+||+.+.+.++++....
T Consensus       169 v~g~We~~---~~~~---~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  169 VKGRWEKD---RGPQ---PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             EEEE--SB----TT---------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             ccceeccC---CCCC---CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            33221111   1111   3455677888888777642                     2469999999999999997654


Q ss_pred             CCCCeEEEEEc--cCCCEEEEEec-CCeEEEEEC-CCCee--EEEeecccccCCCCc---------CcccceEEEEEecC
Q 006126          549 MDLPITYATYS--CDGKCIYVSCK-SGHVKVFDT-STLEL--RCQINLTAYAQPGTI---------SLELYPLVIAAHPL  613 (660)
Q Consensus       549 ~~~~v~~~~~s--~dg~~l~sg~~-dg~I~iwd~-~~~~~--~~~~~~~~~~~~gh~---------~~~v~~~~v~~sp~  613 (660)
                      .......+.|.  |+..+=++|+. .++|..|-. ..++-  ..++........+-.         .-+--++.+..|. 
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-  321 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-  321 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-
Confidence            33345567765  55555444433 445555443 44431  122221111000100         0011256889999 


Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCC
Q 006126          614 EPNRIA-LGLTNGRVHVIEPLES  635 (660)
Q Consensus       614 d~~~l~-s~s~Dg~v~iw~~~~~  635 (660)
                      |.++|. ++-.+|.||.||+...
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SST
T ss_pred             CCCEEEEEcccCCcEEEEecCCC
Confidence            556654 5557899999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.29  E-value=8.2  Score=40.55  Aligned_cols=278  Identities=14%  Similarity=0.093  Sum_probs=148.3

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-------CCEEEEEeCC
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG  395 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------~~~l~s~~dg  395 (660)
                      ...++.||..|.++||+........              . ..++..    .-..+|..+..-       ...||.-.-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~--------------~-~lllE~----~l~~PILqv~~G~F~s~~~~~~LaVLhP~   97 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQP--------------E-DLLLET----QLKDPILQVECGKFVSGSEDLQLAVLHPR   97 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCC--------------c-cEEEEE----ecCCcEEEEEeccccCCCCcceEEEecCC
Confidence            3589999999999999875443211              0 001110    233455555433       2345555566


Q ss_pred             cEEEEECCC--Ce-------EEEEEcCC--CCCeEEEEEcC----CC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126          396 KISIFSLET--FQ-------TLATFANP--PPIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  458 (660)
Q Consensus       396 ~I~iwd~~~--~~-------~~~~~~~~--~~~v~~v~~sp----~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~  458 (660)
                      .+.+|.+..  |.       .+..+..|  ......+++-|    .+  .|.+=+.||.+.+|+-+.......+.. ---
T Consensus        98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll  176 (418)
T PF14727_consen   98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL  176 (418)
T ss_pred             EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence            777777621  11       11111122  22233444433    22  788899999999999665433333433 222


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee---------------ece---eeeeeeeccCCCCCCeEEE---EEec
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------------CSK---FLHSFQTGLVPETTIVNHI---QFHP  517 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~---------------~~~---~~~~~~~~~~~~~~~v~~~---~~sp  517 (660)
                      .-.+.|.+.-..+++++.+..+..|....-...               ..+   +-.+..-|     ..+..+   .++.
T Consensus       177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-----E~~l~i~v~~~~~  251 (418)
T PF14727_consen  177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-----EQALDIQVVRFSS  251 (418)
T ss_pred             CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-----ceeEEEEEEEcCC
Confidence            234678888888999999988888876320000               000   00011112     223333   3333


Q ss_pred             CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc----cCC---CEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          518 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS----CDG---KCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       518 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~dg---~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      ....+++=...++.+.+. +|......+.+  -.+.....|.    .++   ..++.++.++.+.||.=  .++++.-..
T Consensus       252 ~~~~IvvLger~Lf~l~~-~G~l~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l  326 (418)
T PF14727_consen  252 SESDIVVLGERSLFCLKD-NGSLRFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQL  326 (418)
T ss_pred             CCceEEEEecceEEEEcC-CCeEEEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCC
Confidence            444455534556666665 56554443321  2222222222    122   25888889999999964  344444332


Q ss_pred             ccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126          591 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW  639 (660)
Q Consensus       591 ~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w  639 (660)
                      .        ..++.+....|.. -...+++-+++|.+.+-=+.+.....
T Consensus       327 ~--------~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGTdPs~~  366 (418)
T PF14727_consen  327 P--------HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGTDPSLF  366 (418)
T ss_pred             C--------CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCCCCccc
Confidence            1        3344443334444 45689999999999998777665443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.25  E-value=8.1  Score=40.31  Aligned_cols=198  Identities=10%  Similarity=-0.055  Sum_probs=109.2

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC--CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC  461 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~~  461 (660)
                      +..+..+. +|.|.-.|..+++.+.......  ..+.+-.+..+|.++.++.++.++.+|..+|+.+-...... ..+..
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            44455555 8999999999988765443221  22222223336688889999999999998898887776554 11111


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--cCcEEEEeCCCCc
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EGQIDVYEAPTLN  539 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--d~~i~iwd~~~~~  539 (660)
                      -..-.++ .+..++.++.+...|..+|+..-....... ..     ..+..-....++..++...  ++.+.-.|..+|.
T Consensus       148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence            1222233 334444678888888888765433222210 00     0111111123343333333  4567777777777


Q ss_pred             eeeeecCCC--CCCCeEEEEEcc-----CCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          540 HTSQLVPDK--MDLPITYATYSC-----DGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       540 ~~~~~~~~~--~~~~v~~~~~s~-----dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      ..-......  ....+.......     .+.-++.++.++.+...|..+++.+..+..
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            665532110  011110010111     122346777788899999999999998875

>PRK13684 Ycf48-like protein; Provisional

Probab=94.19  E-value=7.6  Score=39.81  Aligned_cols=157  Identities=12%  Similarity=0.062  Sum_probs=86.1

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE  534 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd  534 (660)
                      .+.+.++.+.|++.+++++ ..|.+.. +|-..      ........+..   ..++++.+.++++.++++..|.+.+=.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg------~tW~~~~~~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s  241 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQ------TAWTPHQRNSS---RRLQSMGFQPDGNLWMLARGGQIRFND  241 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCC------CeEEEeeCCCc---ccceeeeEcCCCCEEEEecCCEEEEcc
Confidence            4578899999988666554 4555442 22111      11110111111   578899999999988888777765433


Q ss_pred             CCCCceeeeecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126          535 APTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       535 ~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp  612 (660)
                      ...+..-......  .....+.++.+.+++..+++| .+|.|. .....|+.-.......    +- ....+  .+.|..
T Consensus       242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~----~~-~~~~~--~~~~~~  312 (334)
T PRK13684        242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE----EV-PSNFY--KIVFLD  312 (334)
T ss_pred             CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC----CC-CcceE--EEEEeC
Confidence            3344332221111  013457889999988766655 567664 4445444332222100    10 11233  677765


Q ss_pred             CCCCEEEEEeCCCeEEEEeCC
Q 006126          613 LEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       613 ~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                       ++..++ .+..|.|.-|+-.
T Consensus       313 -~~~~~~-~G~~G~il~~~~~  331 (334)
T PRK13684        313 -PEKGFV-LGQRGVLLRYVGS  331 (334)
T ss_pred             -CCceEE-ECCCceEEEecCC
Confidence             444544 5678988887653

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.91  E-value=0.77  Score=52.27  Aligned_cols=124  Identities=15%  Similarity=0.071  Sum_probs=81.3

Q ss_pred             CCcEEEEECCCCeEEE-----EEc------CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-eeeEeeccCCCe
Q 006126          394 GGKISIFSLETFQTLA-----TFA------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRI  459 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~-----~~~------~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~-~~~~~~~~~~~v  459 (660)
                      +..|..||+++...-.     -+.      .......++.|+|.=  ..+.+..|+.|++.-+..-. .+..+. ....+
T Consensus       123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~  201 (1405)
T KOG3630|consen  123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQ  201 (1405)
T ss_pred             CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccce
Confidence            3478899987532211     111      122334688899977  77888899999888765322 222222 45678


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      ++++|+|.|+.++.|-..|++.-|-..-.......... ...   +  ..|.+++|-....++++
T Consensus       202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-~~e---~--yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-VEE---N--YRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             eeEEeccccceeeEecCCCeEEEeecccceeecccCCC-cCC---C--cceeEEEEecceeEEEE
Confidence            99999999999999999999998876542111111111 111   1  68999999988888876

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.82  E-value=3.6  Score=44.45  Aligned_cols=133  Identities=11%  Similarity=-0.033  Sum_probs=75.7

Q ss_pred             EEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCC-CCeEEEEEccCCCEEEEEec-------------CCeEEEEE
Q 006126          513 IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK-------------SGHVKVFD  578 (660)
Q Consensus       513 ~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~sg~~-------------dg~I~iwd  578 (660)
                      +...++|.+++... ..++.+|+ .|+.+..+...... ..=..+..-|+|++|+.+..             ...|..+|
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            66778888887644 78888998 57776665442200 01135677799999998772             23477788


Q ss_pred             CCCCeeEEEeecccccC-----------------CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccC
Q 006126          579 TSTLELRCQINLTAYAQ-----------------PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~-----------------~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~  641 (660)
                       .+|+.+..+.......                 .+...+...+.++.+.|.++.+++|+-.-..|...|..+++.+|..
T Consensus       231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence             8999998877543321                 1122344567899999965666666655668999999999999987


Q ss_pred             CCCcccc
Q 006126          642 LPFTDSR  648 (660)
Q Consensus       642 ~~~~~~~  648 (660)
                      .++....
T Consensus       310 g~~~~w~  316 (477)
T PF05935_consen  310 GPPGGWN  316 (477)
T ss_dssp             S-STT--
T ss_pred             CCCCCCC
Confidence            7775444

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PHA02790 Kelch-like protein; Provisional

Probab=93.78  E-value=4  Score=44.26  Aligned_cols=172  Identities=9%  Similarity=-0.104  Sum_probs=79.8

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC--CeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d--~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~  470 (660)
                      .+..||..+++....-.-...........-+| ..+.||.+  .++..||..+++-..  .+....... ++ ..-+|+.
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~-~~~~g~I  365 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AV-ASINNVI  365 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EE-EEECCEE
Confidence            57778888765433211111111111122456 66677654  368888876653221  111111111 22 2236777


Q ss_pred             EEEEeCCC---cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC
Q 006126          471 LVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD  547 (660)
Q Consensus       471 l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~  547 (660)
                      .+.|+.++   .+..||.++.+=....++.   ...    .. .+++ .-+|+..+.|  |.+.+||..+.+-...-...
T Consensus       366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~---~~r----~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~  434 (480)
T PHA02790        366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTY---YPH----YK-SCAL-VFGRRLFLVG--RNAEFYCESSNTWTLIDDPI  434 (480)
T ss_pred             EEecCcCCCCccEEEEeCCCCEEEeCCCCC---Ccc----cc-ceEE-EECCEEEEEC--CceEEecCCCCcEeEcCCCC
Confidence            78777653   4678888764311111111   111    01 1222 2345555555  35678888766543221111


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCC
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTL  582 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~  582 (660)
                      ...... +++ --+|+..+.||.+     ..|..||..++
T Consensus       435 ~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        435 YPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            001112 222 2367777777754     24556666554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.75  E-value=8.7  Score=41.57  Aligned_cols=147  Identities=19%  Similarity=0.084  Sum_probs=72.3

Q ss_pred             CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126          434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI  513 (660)
Q Consensus       434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  513 (660)
                      ..+...++|.. |.....+.........+...++|.+++...  ..+..+|+.. +......+.   .+..   ..=..+
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~---~~~~---~~HHD~  195 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLP---GGYY---DFHHDI  195 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE-----TTEE----B-S-E
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecC---Cccc---cccccc
Confidence            34456666643 555444432222221266778998887655  7888888864 332222222   1000   011257


Q ss_pred             EEecCCcEEEEEe--------------cCcEEEEeCCCCceeeeecCCCC-------------------------CCCeE
Q 006126          514 QFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQLVPDKM-------------------------DLPIT  554 (660)
Q Consensus       514 ~~sp~~~~l~~~~--------------d~~i~iwd~~~~~~~~~~~~~~~-------------------------~~~v~  554 (660)
                      ...|+|++|+.+.              ...|..+| .+|+.+..+...+|                         =..+.
T Consensus       196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N  274 (477)
T PF05935_consen  196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN  274 (477)
T ss_dssp             EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred             EECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence            7888998888643              12355666 56665544322111                         13578


Q ss_pred             EEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecc
Q 006126          555 YATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT  591 (660)
Q Consensus       555 ~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~  591 (660)
                      ++.+.+ ++.+++++-.-..|...|..++++...+..+
T Consensus       275 si~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  275 SIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             EEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             ccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            899998 5555555555568999999999999888754

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.74  E-value=7.6  Score=38.22  Aligned_cols=208  Identities=14%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEeCC------CCc-eeeEeec-----cCCCeEEEEEeCCCC------------EE
Q 006126          417 IATYFILLPQD-LFAFGFDDSSILVHCPC------TKK-TKAKLKG-----HQNRITCLAYSLSLN------------VL  471 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~~------~~~-~~~~~~~-----~~~~v~~l~~sp~~~------------~l  471 (660)
                      .-+.++++|.+ .-++...-+...+||..      ..+ .+-++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            34689999999 76777777889999986      122 2223321     224567777764332            36


Q ss_pred             EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe-EEEEEec--CCcEEEEE--ecCcEEEEeCCCCcee--eee
Q 006126          472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHP--DQIHLLSI--HEGQIDVYEAPTLNHT--SQL  544 (660)
Q Consensus       472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp--~~~~l~~~--~d~~i~iwd~~~~~~~--~~~  544 (660)
                      +.+++||+|.-|...-+........-.+..+..   +.| ..+++..  .+.+|+..  ..++|.|||-.=.+..  ..+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~---gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ---GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCC---cceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            778899999999854322100001110111111   223 2355553  36677764  7899999986422211  011


Q ss_pred             cCC---CC--CCCe---------EEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126          545 VPD---KM--DLPI---------TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA  610 (660)
Q Consensus       545 ~~~---~~--~~~v---------~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~  610 (660)
                      ...   ..  ...|         +-..-.++++.=+.|..-|.|-+||+. |.+++++...     |.-+. =|  .++.
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-----g~LNa-PW--G~a~  251 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-----GRLNA-PW--GLAI  251 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-----CcccC-Cc--eeee
Confidence            100   00  0011         111112223223334445789999986 6666666421     21122 12  3444


Q ss_pred             ec-----CCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          611 HP-----LEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       611 sp-----~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .|     -.+.+|+---.||+|..+|+.+++
T Consensus       252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       252 APESFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             ChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence            33     135566666679999999999876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.61  E-value=1.8  Score=44.51  Aligned_cols=155  Identities=10%  Similarity=0.096  Sum_probs=97.0

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .|..|.+..+.+...|.+.=|-..+.. +.....+.+.   ..++|.++.||+|.+.||.--.+.+|.+++....+....
T Consensus        28 vFfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~---d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   28 VFFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMD---DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             eeeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeec---CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            444555555556666667777776533 2223333333   367999999999999999999999999988754432100


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCC
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQ  426 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp~  426 (660)
                                 +.  .++.      .....|....|+ ..-+|...+.-+-+|-+... +.++..+.+...|.-..|.++
T Consensus       104 -----------~~--~~ck------~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  104 -----------YT--QECK------TKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPE  164 (657)
T ss_pred             -----------HH--HHhc------cCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccc
Confidence                       00  0000      234458888999 77788777776777766543 345556678888888899998


Q ss_pred             C--eEEEEe-CCCeEEEEeCCCC
Q 006126          427 D--LFAFGF-DDSSILVHCPCTK  446 (660)
Q Consensus       427 ~--~l~s~~-~d~~I~iwd~~~~  446 (660)
                      .  .+++.+ ..+++.=+.++++
T Consensus       165 t~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  165 TAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             cceEeeeccccccccccEEEeec
Confidence            8  333333 4444444444443

>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats

Probab=93.60  E-value=0.043  Score=49.55  Aligned_cols=50  Identities=18%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCcccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc
Q 006126           48 ALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD   97 (660)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~   97 (660)
                      +.-.++...+-+++.-...|++||++.||+..||.+++.+||+.+++.++
T Consensus       148 ~dp~~v~~~~~~~~~~re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~LE  197 (199)
T PF06588_consen  148 DDPDIVQPCLQWYNKYREKEAIRLCLKHLRQRGYLEAFESLQKQTGVQLE  197 (199)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHcCCCCC
Confidence            33455666666677788899999999999999999999999999999874

Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.52  E-value=10  Score=38.89  Aligned_cols=72  Identities=13%  Similarity=0.074  Sum_probs=40.9

Q ss_pred             CCCeEEEEEcc-------CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          550 DLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       550 ~~~v~~~~~s~-------dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      ...+..+.|-.       .|.++++.-..+.|....+..+..+......  .  +  .....+..+++.| ||.+.++.+
T Consensus       252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~--~--~~~~r~~~v~~~p-DG~Lyv~~d  324 (331)
T PF07995_consen  252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L--G--GFGGRPRDVAQGP-DGALYVSDD  324 (331)
T ss_dssp             T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C--T--TSSS-EEEEEEET-TSEEEEEE-
T ss_pred             ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c--c--cCCCCceEEEEcC-CCeEEEEEC
Confidence            35566677653       4456666655678888887755332221110  0  1  1112355999999 899888888


Q ss_pred             CCCeEE
Q 006126          623 TNGRVH  628 (660)
Q Consensus       623 ~Dg~v~  628 (660)
                      .+|.|.
T Consensus       325 ~~G~iy  330 (331)
T PF07995_consen  325 SDGKIY  330 (331)
T ss_dssp             TTTTEE
T ss_pred             CCCeEe
Confidence            888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA03098 kelch-like protein; Provisional

Probab=93.36  E-value=4.9  Score=44.33  Aligned_cols=182  Identities=10%  Similarity=-0.028  Sum_probs=85.9

Q ss_pred             eEEEEeCCCCceeeE--eeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126          437 SILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI  509 (660)
Q Consensus       437 ~I~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  509 (660)
                      .+..||..+++-...  +.........+  .-+++.++.|+.+     ..+..||..+.+-....++   .....     
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---p~~r~-----  381 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL---IFPRY-----  381 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc---CcCCc-----
Confidence            467788776644221  11111111222  2267777778765     3477788776432111111   11111     


Q ss_pred             eEEEEEecCCcEEEE-Ee--c----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC--------CeE
Q 006126          510 VNHIQFHPDQIHLLS-IH--E----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------GHV  574 (660)
Q Consensus       510 v~~~~~sp~~~~l~~-~~--d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d--------g~I  574 (660)
                      -.+++. -+++..+. |.  +    +.+..||..+.+-...-.... ...-.+ +...++...+.|+.+        ..+
T Consensus       382 ~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v  458 (534)
T PHA03098        382 NPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIV  458 (534)
T ss_pred             cceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEEEECCccCCCCCcccceE
Confidence            112222 24555555 42  1    358899987655432111110 111112 223456666677643        238


Q ss_pred             EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCCCC
Q 006126          575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~~~  644 (660)
                      .+||..+++-... .... .+..      ....+.+   ++.+++.||.+     +.|.+||+.+.  .|...++
T Consensus       459 ~~yd~~~~~W~~~-~~~~-~~r~------~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~  520 (534)
T PHA03098        459 ESYNPVTNKWTEL-SSLN-FPRI------NASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN--TWTLFCK  520 (534)
T ss_pred             EEecCCCCceeeC-CCCC-cccc------cceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCC--EEEecCC
Confidence            8899887653322 1110 1111      1112222   56777777754     46888887754  5765443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.09  E-value=10  Score=38.75  Aligned_cols=174  Identities=14%  Similarity=0.069  Sum_probs=94.3

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCc------EEEEEcCCCe--e-----eeceeeeeeeeccCC--CCCCeEEEEEecCCc
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQ------LCVWDAVGWK--K-----LCSKFLHSFQTGLVP--ETTIVNHIQFHPDQI  520 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~------i~vwd~~~~~--~-----~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~  520 (660)
                      -+.+..+.+.|++..+++.+.+|.      +..+++....  .     .....+. ...+..-  .....-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcCCcCCCChhHeEEecCCC
Confidence            356788889876667777788887      6666655410  0     0001111 0011000  001344788888888


Q ss_pred             EEEEE-ec------CcEEEEeCCCCceeeeecCC-------------CCCCCeEEEEEccCCCEEEEEec-----CC--e
Q 006126          521 HLLSI-HE------GQIDVYEAPTLNHTSQLVPD-------------KMDLPITYATYSCDGKCIYVSCK-----SG--H  573 (660)
Q Consensus       521 ~l~~~-~d------~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~s~dg~~l~sg~~-----dg--~  573 (660)
                      ++++. .+      ..|+.++.. |+....+...             ..+..+-+++++|||+.|+++.+     |+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88886 55      678889875 6665554211             13567889999999996665543     22  1


Q ss_pred             -------EEE--EECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe-----CCCeEEEEeCC
Q 006126          574 -------VKV--FDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-----TNGRVHVIEPL  633 (660)
Q Consensus       574 -------I~i--wd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-----~Dg~v~iw~~~  633 (660)
                             ++|  ||..+ ++....+......+... .....+..+.+-| ++++|+-==     ....++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~-~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA-PGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccc-cCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEE
Confidence                   445  45544 33333333221100000 0123345888888 777766321     23456666554

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.73  E-value=2.2  Score=44.60  Aligned_cols=93  Identities=12%  Similarity=0.005  Sum_probs=61.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEE---------CCCCee--EEEeecc-cccCCCCcCcccceEEEEEecCC--CC
Q 006126          551 LPITYATYSCDGKCIYVSCKSGHVKVFD---------TSTLEL--RCQINLT-AYAQPGTISLELYPLVIAAHPLE--PN  616 (660)
Q Consensus       551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd---------~~~~~~--~~~~~~~-~~~~~gh~~~~v~~~~v~~sp~d--~~  616 (660)
                      -.|..+..++.|..++-.|.+|.+.++=         ++.|+.  .+..... ......  ...+.+..++|||+.  ..
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts--s~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS--STSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc--CCceeeeeccccCCccCCc
Confidence            4567788899999999999999765443         123322  1111110 000001  223456689999953  46


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          617 RIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                      .|..-+.|.++|||+..+....|-++++.
T Consensus       182 hL~iL~sdnviRiy~lS~~telylqpgep  210 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTELYLQPGEP  210 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchhhccCCCc
Confidence            78888899999999999998888877664

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.60  E-value=4.5  Score=42.12  Aligned_cols=147  Identities=15%  Similarity=0.049  Sum_probs=76.6

Q ss_pred             eEEEEEcCCC-eEEEEe-----------CCC-eEEEEeCCC--Cc--eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          418 ATYFILLPQD-LFAFGF-----------DDS-SILVHCPCT--KK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       418 v~~v~~sp~~-~l~s~~-----------~d~-~I~iwd~~~--~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                      ...++|.++| ++++-.           ..+ .|.+++-..  |+  ....+...-.....+++.++| .++ ++.....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence            4578899988 444432           223 677776443  32  223443334456889999988 444 4444333


Q ss_pred             EEEEcCCCeee--eceeeeeeeecc-CCCCCCeEEEEEecCCcEEEE-Eec-------------------CcEEEEeCCC
Q 006126          481 CVWDAVGWKKL--CSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLLS-IHE-------------------GQIDVYEAPT  537 (660)
Q Consensus       481 ~vwd~~~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~-~~d-------------------~~i~iwd~~~  537 (660)
                      ++.|.......  ....+.+.+... .........++|.|||.+.++ +..                   +.|..+|...
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            34354321100  011111111110 000034778999999987776 421                   3455556544


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                      ++ +..+.. . -.....++|+++|+++++-.
T Consensus       174 ~~-~e~~a~-G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       174 GK-LRVVAH-G-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             Ce-EEEEec-C-cCCCccceECCCCCEEEEcc
Confidence            33 233322 2 34456899999999877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.39  E-value=16  Score=38.29  Aligned_cols=151  Identities=8%  Similarity=-0.016  Sum_probs=83.7

Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  495 (660)
                      ..+..++++ .++.+.....++-||-  |..  ...-......+..+.|.+++..++++ .+|.+. |....+..-....
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence            345566777 5555544433334442  221  11112234568899999998877755 556653 3333332100001


Q ss_pred             eeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec-CCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          496 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                      +.........  ..+.++.|.+++..+++|..|.+.... ..|+.-.... ...-...++.+.|.++++.+++| .+|.|
T Consensus       318 f~~~~~~~~~--~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i  393 (398)
T PLN00033        318 FEEADIKSRG--FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL  393 (398)
T ss_pred             eeecccCCCC--cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence            1111111111  358899999999998889888776664 3444323322 11124678899998777766665 67776


Q ss_pred             EEE
Q 006126          575 KVF  577 (660)
Q Consensus       575 ~iw  577 (660)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.23  E-value=13  Score=36.74  Aligned_cols=205  Identities=13%  Similarity=0.106  Sum_probs=116.2

Q ss_pred             eEEEEEe-CCEEEEEe--CCcEEEEECC------CC-eEEEEEcC-----CCCCeEEEEEcCCC-------------eEE
Q 006126          379 ISCFALR-GSHLFSAS--GGKISIFSLE------TF-QTLATFAN-----PPPIATYFILLPQD-------------LFA  430 (660)
Q Consensus       379 v~~v~~s-~~~l~s~~--dg~I~iwd~~------~~-~~~~~~~~-----~~~~v~~v~~sp~~-------------~l~  430 (660)
                      -+.++++ +..+..+.  .+...+||..      .. ..+-++..     .....+.+.|+...             .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4678888 44444444  5889999986      12 22333332     12345566665321             478


Q ss_pred             EEeCCCeEEEEeCCCCce-----eeEee-ccCCCe-EEEEEeC--CCCEEEEE-eCCCcEEEEEcCCCeeee--ceeeee
Q 006126          431 FGFDDSSILVHCPCTKKT-----KAKLK-GHQNRI-TCLAYSL--SLNVLVSS-GADAQLCVWDAVGWKKLC--SKFLHS  498 (660)
Q Consensus       431 s~~~d~~I~iwd~~~~~~-----~~~~~-~~~~~v-~~l~~sp--~~~~l~s~-s~dg~i~vwd~~~~~~~~--~~~~~~  498 (660)
                      .+++||+|.-|...-+..     ...+. +..+.| ..+++..  .+.+|..+ -..++|.+||-.-.....  ...-..
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            899999999998543322     12222 112333 3555543  34555544 357899999865421100  000000


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-E-------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc----
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-I-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----  560 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~----  560 (660)
                      ++.+..|  -.|..+    .++..++ .             .-|.|-+||+ +|..++++.....-...+.++..|    
T Consensus       185 iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       185 LPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            1222211  112111    2333332 2             2357999998 789998886554455666777754    


Q ss_pred             --CCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          561 --DGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       561 --dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                        .|.+|+---.||+|..||..+++.+..+..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence              567787777799999999999987777653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.19  E-value=14  Score=37.07  Aligned_cols=157  Identities=9%  Similarity=0.035  Sum_probs=81.2

Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCe
Q 006126          412 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWK  489 (660)
Q Consensus       412 ~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~-~~~  489 (660)
                      ......+..+.-++|| +++++.......-||.-...-...-+.-..+|..|.|.|++...+. ...|.|+.=+.. ..+
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence            3455678888889999 7777766666667875432222222334678999999999877664 478888887722 211


Q ss_pred             eeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEE
Q 006126          490 KLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       490 ~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~s  567 (660)
                      .- ...+... ..+     -.+..++|.+++...+++..|.+. .....|+.=+.... ..-...++.+.|.++.+-++.
T Consensus       220 ~w-~~~~~~~~~~~-----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  220 TW-SEPIIPIKTNG-----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             EE----B-TTSS-------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             cc-ccccCCcccCc-----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence            10 1111101 111     348899999998888888777553 34445554333322 112567889999866555555


Q ss_pred             EecCCeEEEE
Q 006126          568 SCKSGHVKVF  577 (660)
Q Consensus       568 g~~dg~I~iw  577 (660)
                      | .+|.|--|
T Consensus       293 G-~~G~ll~~  301 (302)
T PF14870_consen  293 G-QDGVLLRY  301 (302)
T ss_dssp             --STTEEEEE
T ss_pred             C-CCcEEEEe
Confidence            5 67877554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.18  E-value=0.76  Score=43.77  Aligned_cols=74  Identities=9%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeece-eeeeeee-------ccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQT-------GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA  535 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~-------~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~  535 (660)
                      +..++.+|++.+.+|.+++||+.+++..... .+..+..       ...   ..|..+.++.+|.-+++-.+|..+.||.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~---~~i~~~~lt~~G~PiV~lsng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSS---PNITSCSLTSNGVPIVTLSNGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCC---CcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence            4557889999999999999999997654322 2221222       122   5788899999998888866788899987


Q ss_pred             CCCce
Q 006126          536 PTLNH  540 (660)
Q Consensus       536 ~~~~~  540 (660)
                      .-+.-
T Consensus        95 ~L~~W   99 (219)
T PF07569_consen   95 DLGCW   99 (219)
T ss_pred             cccee
Confidence            54433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.98  E-value=0.71  Score=46.49  Aligned_cols=88  Identities=14%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             cccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc----------HHHHHHHHhcCchHhHHHhhhhhcCCCCCcch
Q 006126           60 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----------INYFREYITSGEWDNAEKYLSAFTNMNDNTYS  129 (660)
Q Consensus        60 ~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~----------~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~  129 (660)
                      +...+.+.|+.+|..|+...|....+..|-+|+|...+          +.++.+++.+|+-.-|++.+..-...-....+
T Consensus       111 v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s  190 (394)
T KOG2817|consen  111 VDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSS  190 (394)
T ss_pred             cChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccc
Confidence            33355566799999999999999999999999999852          88999999999999998887542111111223


Q ss_pred             hhhHHHHHHHHHHHHhhhc
Q 006126          130 AKMFSQIQRQKYLEAVDRQ  148 (660)
Q Consensus       130 ~~~~~~i~~q~~lell~~~  148 (660)
                      .-.|. +..+.|++++..+
T Consensus       191 ~LE~~-Lh~l~fl~l~~~g  208 (394)
T KOG2817|consen  191 SLEFK-LHSLHFLSLIRGG  208 (394)
T ss_pred             cHHHH-HHHHHHHHHHhcC
Confidence            44555 8999999999988

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.96  E-value=2.7  Score=43.87  Aligned_cols=138  Identities=13%  Similarity=0.212  Sum_probs=88.2

Q ss_pred             CEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--------eEEEEeCCCeEEEEeCCCC-ceeeEee--
Q 006126          387 SHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCTK-KTKAKLK--  453 (660)
Q Consensus       387 ~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--------~l~s~~~d~~I~iwd~~~~-~~~~~~~--  453 (660)
                      .+|..-+  ...+.-.|++.|+.+..+..|...  -+.|.|+.        .-++|-.+..|.-.|.+-. ..+....  
T Consensus       480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK  557 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK  557 (776)
T ss_pred             ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence            3444433  467888899999999988877665  46777754        2345666777777776642 2222211  


Q ss_pred             c--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEE
Q 006126          454 G--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID  531 (660)
Q Consensus       454 ~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~  531 (660)
                      .  ......|..-. .+.++++++..|.|++||.-.-      ...+...+-.   ..|..+..+.+|+++++.....+.
T Consensus       558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~------rAKtalP~lG---~aIk~idvta~Gk~ilaTCk~yll  627 (776)
T COG5167         558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK------RAKTALPGLG---DAIKHIDVTANGKHILATCKNYLL  627 (776)
T ss_pred             hccccccccccccc-cCceEEEecCCCceeeehhhcc------hhhhcCcccc---cceeeeEeecCCcEEEEeecceEE
Confidence            1  11222333222 3458999999999999996541      1122223333   578899999999999987777888


Q ss_pred             EEeCC
Q 006126          532 VYEAP  536 (660)
Q Consensus       532 iwd~~  536 (660)
                      +.|++
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            88865

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.93  E-value=10  Score=41.80  Aligned_cols=182  Identities=10%  Similarity=0.027  Sum_probs=94.9

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe----eccCCCeEEEEEeCCCCEE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL----KGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l  471 (660)
                      .|+||+.. |..+..+.-....+-.+.|+.+..|++...+|++++|++- |..+...    ......|..+.+..+|-. 
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa-  141 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA-  141 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE-
Confidence            46677754 5555554433336668999888877888899999999976 3333321    222334555555555533 


Q ss_pred             EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE--EEEEecCc--EEEEeCC--CCceeeeec
Q 006126          472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH--LLSIHEGQ--IDVYEAP--TLNHTSQLV  545 (660)
Q Consensus       472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~d~~--i~iwd~~--~~~~~~~~~  545 (660)
                       +-..+|.+.+-.-......  .....++...    ..-.+-...+++..  ++..-+-.  ..++-..  +.+. ..+.
T Consensus       142 -vlt~~g~v~~i~~~~~~~~--~~~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~  213 (829)
T KOG2280|consen  142 -VLTVSGQVILINGVEEPKL--RKMPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALS  213 (829)
T ss_pred             -EEecCCcEEEEcCCCcchh--hhCCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccC
Confidence             3344555544332221100  1111011111    11122222222211  11111100  1111111  1111 1121


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      .  ....+..+..||+.++|+--...|.|.+-+.+..+....+..
T Consensus       214 ~--~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  214 W--PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             C--CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            1  146788899999999999999999999999888777776653

>PHA02790 Kelch-like protein; Provisional

Probab=91.87  E-value=11  Score=40.92  Aligned_cols=184  Identities=7%  Similarity=-0.015  Sum_probs=85.9

Q ss_pred             eEEEEeCCC-----eEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCeeeeceeeee
Q 006126          428 LFAFGFDDS-----SILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       428 ~l~s~~~d~-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~  498 (660)
                      .+++||.++     .+..||..+++-..  .+.........+  .-+|...+.|+.+  ..+..||..+.+-   ..+..
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W---~~~~~  348 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAW---VNMPS  348 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeE---EECCC
Confidence            455555432     46678877654322  111111111122  2367777777754  3577888765321   11111


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                      +....    ... +++ .-+|+..+. |.+   ..+..||.++.+-...-......... + +..-+|+..+.|   |.+
T Consensus       349 l~~~r----~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~-~~~~~~~IYv~G---G~~  417 (480)
T PHA02790        349 LLKPR----CNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-C-ALVFGRRLFLVG---RNA  417 (480)
T ss_pred             CCCCC----ccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-e-EEEECCEEEEEC---Cce
Confidence            11111    011 222 224665555 433   45778998766543221111001111 1 223456666666   357


Q ss_pred             EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceecc
Q 006126          575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWG  640 (660)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~  640 (660)
                      .+||..+++-... . ....+..  .  ..  .+..   ++++.+.||.+     .+|..||+.+.  +|.
T Consensus       418 e~ydp~~~~W~~~-~-~m~~~r~--~--~~--~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~--~W~  475 (480)
T PHA02790        418 EFYCESSNTWTLI-D-DPIYPRD--N--PE--LIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTY--SWN  475 (480)
T ss_pred             EEecCCCCcEeEc-C-CCCCCcc--c--cE--EEEE---CCEEEEECCcCCCcccceEEEEECCCC--eEE
Confidence            7899877643221 1 1111111  1  11  2222   57888888864     35778888754  454

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.64  E-value=6  Score=44.05  Aligned_cols=106  Identities=13%  Similarity=0.162  Sum_probs=66.8

Q ss_pred             eEEEEEe----CCEEEEEe-CCcEEEEECCC-------C----e---------EEEEEcCCCCCeEEEEEc--CCC-eEE
Q 006126          379 ISCFALR----GSHLFSAS-GGKISIFSLET-------F----Q---------TLATFANPPPIATYFILL--PQD-LFA  430 (660)
Q Consensus       379 v~~v~~s----~~~l~s~~-dg~I~iwd~~~-------~----~---------~~~~~~~~~~~v~~v~~s--p~~-~l~  430 (660)
                      |+.+...    ...|+.|. ||.|.+|.+++       .    .         +...+ .....++.++++  ... +||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEE
Confidence            4445444    34566666 79999997632       1    0         00111 224577899998  555 888


Q ss_pred             EEeCCCeEEEEeCCCC--ceee-EeeccCCCeEEEEEeCCC---C---EEEEEeCCCcEEEEEc
Q 006126          431 FGFDDSSILVHCPCTK--KTKA-KLKGHQNRITCLAYSLSL---N---VLVSSGADAQLCVWDA  485 (660)
Q Consensus       431 s~~~d~~I~iwd~~~~--~~~~-~~~~~~~~v~~l~~sp~~---~---~l~s~s~dg~i~vwd~  485 (660)
                      +++....|.||-....  +... .-..|...|.+|.|-++.   .   .+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888877765432  1111 111266789999997643   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.06  E-value=18  Score=36.13  Aligned_cols=168  Identities=13%  Similarity=0.072  Sum_probs=90.7

Q ss_pred             cEEEEECCCCeEEEEEcCC------CCCeEEEEEcC--C----C-eEEEEeCCCeEEEEeCCCCceeeEeecc-------
Q 006126          396 KISIFSLETFQTLATFANP------PPIATYFILLP--Q----D-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------  455 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~------~~~v~~v~~sp--~----~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-------  455 (660)
                      +|.+||+.+++.++++.-+      ...+..+.+..  .    + ..++-+..+-|.|+|+.+++.-+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5778999999988887532      34556676655  1    3 4445555668999999998765544321       


Q ss_pred             ------------CCCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCC-----Ceeeece----eeeeeeeccCCCCCCeE
Q 006126          456 ------------QNRITCLAYSL---SLNVLVSSGADAQLCVWDAVG-----WKKLCSK----FLHSFQTGLVPETTIVN  511 (660)
Q Consensus       456 ------------~~~v~~l~~sp---~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~----~~~~~~~~~~~~~~~v~  511 (660)
                                  ...+..++.+|   +|+.|......+. ++|.+.+     .......    .++  ..|..+  +...
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~--~lG~k~--~~s~  189 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQ--DLGDKG--SQSD  189 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-E--EEEE-----SEC
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccce--eccccC--CCCc
Confidence                        12355566655   5556665543322 2233222     1100000    111  112211  2456


Q ss_pred             EEEEecCCcEEEE-EecCcEEEEeCCCCc---eeeeecCCCC-CCCeEEEEEcc--CCCEEEEE
Q 006126          512 HIQFHPDQIHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKM-DLPITYATYSC--DGKCIYVS  568 (660)
Q Consensus       512 ~~~~sp~~~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~v~~~~~s~--dg~~l~sg  568 (660)
                      .++++++|..+++ -..+.|..||..+.-   ....+..... -..+..+.+.+  +|.+.+..
T Consensus       190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            7899999988888 488999999987511   2222322222 35677888888  66655543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.47  E-value=8.9  Score=42.02  Aligned_cols=165  Identities=15%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.-+|.|+.++.+..||.|++|++.......-|.        -..+-..+.|...|  |+++..|..+.-|.-..--...
T Consensus        20 iqshp~~~s~v~~~~d~si~lfn~~~r~qski~~--------~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqq   89 (1636)
T KOG3616|consen   20 IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE--------EAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQ   89 (1636)
T ss_pred             eeecCCCceEEEEecCCcEEEEeecccchhhhhh--------hcCCccceeeeccc--eEEEeccchhheeeccCcchhh
Confidence            4666999999999999999999986311111111        12334455565555  5666677777777644311100


Q ss_pred             e----eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEECCCCeEEEEEcCCC
Q 006126          348 E----EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANPP  415 (660)
Q Consensus       348 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~  415 (660)
                      .    .....++..+.|+....++.+.     -+.|..+..+      .+.+-...  -..|.+-|+.++.....+....
T Consensus        90 fdyndqsekefss~~cdptaqnvvgtl-----cggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g  164 (1636)
T KOG3616|consen   90 FDYNDQSEKEFSSILCDPTAQNVVGTL-----CGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKG  164 (1636)
T ss_pred             ccccchhhhhccceecCchhhhhhhhh-----ccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCC
Confidence            0    1112233344554443333322     1223333222      22222222  4567777777666554443333


Q ss_pred             CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc
Q 006126          416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKK  447 (660)
Q Consensus       416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~  447 (660)
                      -.|..+.+-.....+.+....+|.+-|+++.+
T Consensus       165 ~aidelkilgkdryli~~ts~siii~d~es~r  196 (1636)
T KOG3616|consen  165 LAIDELKILGKDRYLIAHTSESIIIADLESNR  196 (1636)
T ss_pred             cchhhhhhccccceEEeeccccEEEeecccch
Confidence            34444444333344556666678888877654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.39  E-value=24  Score=36.46  Aligned_cols=201  Identities=11%  Similarity=0.027  Sum_probs=105.0

Q ss_pred             EEEcCCC----eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe----CCCCE--EEEEeC-C---CcEEEEEcC
Q 006126          421 FILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS----LSLNV--LVSSGA-D---AQLCVWDAV  486 (660)
Q Consensus       421 v~~sp~~----~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s----p~~~~--l~s~s~-d---g~i~vwd~~  486 (660)
                      |-.+|..    +++....++-+.+||+. |+.++.+.  .+.++.+..-    -+|+.  |+.++. +   .+|++|.+.
T Consensus        59 IWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   59 IWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             EE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             EecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence            4445544    67777788899999987 66666664  2344444331    13443  444442 2   469999775


Q ss_pred             C--Ceeeeceee-eeeeeccCCCCCCeEEEEEe--c-CCcEEEE--EecCcEEEEeCC---CC----ceeeeecCCCCCC
Q 006126          487 G--WKKLCSKFL-HSFQTGLVPETTIVNHIQFH--P-DQIHLLS--IHEGQIDVYEAP---TL----NHTSQLVPDKMDL  551 (660)
Q Consensus       487 ~--~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s--p-~~~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~~~~  551 (660)
                      .  +........ ..+..+.    ..+..+|+-  | +|.+.+.  ..+|.+..|-+.   ++    +.++.+..   ..
T Consensus       136 ~~~g~L~~v~~~~~p~~~~~----~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~s  208 (381)
T PF02333_consen  136 PDTGELTDVTDPAAPIATDL----SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GS  208 (381)
T ss_dssp             TTTTEEEE-CBTTC-EE-SS----SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS
T ss_pred             CCCCcceEcCCCCccccccc----ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CC
Confidence            3  321110000 0011111    346777764  3 4555444  477877777654   33    35677755   55


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEECCCC--eeEEEeecccccCCCCcCcccceEEEEEecCCCC--EEEEEeCCCeE
Q 006126          552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN--RIALGLTNGRV  627 (660)
Q Consensus       552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~--~l~s~s~Dg~v  627 (660)
                      .+..|..+....+|+.|-++.-|.-|+.+..  .....+...   ..++-...+.-+.+-..+ ++.  +|+|.-.+++.
T Consensus       209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~---~g~~l~aDvEGlaly~~~-~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA---DGDGLVADVEGLALYYGS-DGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             -EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB---SSSSB-S-EEEEEEEE-C-CC-EEEEEEEGGGTEE
T ss_pred             cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc---cccccccCccceEEEecC-CCCeEEEEEcCCCCeE
Confidence            7889999988899999999988888887632  111111110   011123344433443334 332  45555577899


Q ss_pred             EEEeCCCC
Q 006126          628 HVIEPLES  635 (660)
Q Consensus       628 ~iw~~~~~  635 (660)
                      .||+....
T Consensus       285 ~Vy~r~~~  292 (381)
T PF02333_consen  285 AVYDREGP  292 (381)
T ss_dssp             EEEESSTT
T ss_pred             EEEecCCC
Confidence            99998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.32  E-value=26  Score=36.77  Aligned_cols=151  Identities=12%  Similarity=0.025  Sum_probs=81.0

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL  538 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~  538 (660)
                      ...+..+++|.+++.+..-..++-||--...   ...+.   ....   ..+.++.+.+++..++++..|.+.. ....+
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~---~~~~---~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G  310 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHN---RASA---RRIQNMGWRADGGLWLLTRGGGLYV-SKGTG  310 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEec---CCCc---cceeeeeEcCCCCEEEEeCCceEEE-ecCCC
Confidence            3445567777776665543333344432200   01111   1111   5788999999999998887777544 33344


Q ss_pred             c-----eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126          539 N-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       539 ~-----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      +     .............++++.|.+++..+++| .+|.+... ...|+.-.......    + .....|  .+.|.+ 
T Consensus       311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~----~-~~~~ly--~v~f~~-  380 (398)
T PLN00033        311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGAD----N-IAANLY--SVKFFD-  380 (398)
T ss_pred             CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccC----C-CCccee--EEEEcC-
Confidence            3     12222111113458899999887766666 56766555 34444322221000    0 022355  888877 


Q ss_pred             CCCEEEEEeCCCeEEEE
Q 006126          614 EPNRIALGLTNGRVHVI  630 (660)
Q Consensus       614 d~~~l~s~s~Dg~v~iw  630 (660)
                      +++-+++ +.+|.|.-|
T Consensus       381 ~~~g~~~-G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVL-GNDGVLLRY  396 (398)
T ss_pred             CCceEEE-eCCcEEEEe
Confidence            5555555 578877655

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.11  E-value=0.45  Score=52.65  Aligned_cols=162  Identities=9%  Similarity=0.052  Sum_probs=93.3

Q ss_pred             CCCCCeEEEEEe-C--CEEEEEe-CCcEEEEECC--CCeEE-----EEEcCCCCCeEEEEEcC---CC-eEEEEeCCCeE
Q 006126          374 DPKDSISCFALR-G--SHLFSAS-GGKISIFSLE--TFQTL-----ATFANPPPIATYFILLP---QD-LFAFGFDDSSI  438 (660)
Q Consensus       374 ~h~~~v~~v~~s-~--~~l~s~~-dg~I~iwd~~--~~~~~-----~~~~~~~~~v~~v~~sp---~~-~l~s~~~d~~I  438 (660)
                      +..+.|-.+.|- .  ..+.  . -|.+.+||+.  .|+..     .........+.-+.|.|   +. ++..+-.++.|
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            566777777776 1  1222  3 3778889875  24322     22233344455666665   44 77777788888


Q ss_pred             EEEeCCCCceeeEeeccCCCeEEEE-----------EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          439 LVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~v~~l~-----------~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                      ++.+..+... ..+.+|...+..++           .+|||+.++.++.||.++.|.+.-...+...+++ ....|+.  
T Consensus       208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh-ewkphd~--  283 (1283)
T KOG1916|consen  208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH-EWKPHDK--  283 (1283)
T ss_pred             eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh-ccCCCCC--
Confidence            8877654322 44555766655443           5899999999999999999876532222223333 3334442  


Q ss_pred             CCeEEEEEecC-------Cc--EEEEE--ecCcEEEEeCCCCcee
Q 006126          508 TIVNHIQFHPD-------QI--HLLSI--HEGQIDVYEAPTLNHT  541 (660)
Q Consensus       508 ~~v~~~~~sp~-------~~--~l~~~--~d~~i~iwd~~~~~~~  541 (660)
                      .+-.|.-++..       +.  +++++  .+..+++|.....+|.
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            22222224332       22  23333  3467899987766665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.09  E-value=12  Score=41.79  Aligned_cols=143  Identities=14%  Similarity=0.147  Sum_probs=85.6

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEE------EEEc----------------CCCCCeEEEEEcCCC---eEEEEeCCCeEEE
Q 006126          386 GSHLFSASGGKISIFSLETFQTL------ATFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV  440 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~------~~~~----------------~~~~~v~~v~~sp~~---~l~s~~~d~~I~i  440 (660)
                      .++++.+..+.|.||++..-...      ..+.                .....|+.+....=|   .|+.|.+||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            67788888999999998642221      1110                011234555444323   8899999999999


Q ss_pred             EeCCC-------C----c---------eeeEeeccCCCeEEEEEe--CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126          441 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       441 wd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  498 (660)
                      |.+++       .    +         +...+. -....++++++  ...+++|+++....|.||-....... ......
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r-~~~~~s  206 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER-FYHVPS  206 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc-cccccc
Confidence            96531       0    0         111112 34578899998  77788888888888888766542110 001111


Q ss_pred             eeeccCCCCCCeEEEEEecCC-----c-EEEE-EecCcEEEEeC
Q 006126          499 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA  535 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~-----~-~l~~-~~d~~i~iwd~  535 (660)
                      ....     ..|.+|+|-++.     . .+++ +-.|.+.+|++
T Consensus       207 ~~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccc-----cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1223     358899997753     2 4444 57788888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.70  E-value=6.6  Score=40.19  Aligned_cols=111  Identities=16%  Similarity=0.098  Sum_probs=59.5

Q ss_pred             CeEEEEEecCCcEEEEEecCcEEEEeCCCCce---eeeec--CCCCCCCeEEEEEccC---CCEEEEEec-C--------
Q 006126          509 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH---TSQLV--PDKMDLPITYATYSCD---GKCIYVSCK-S--------  571 (660)
Q Consensus       509 ~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~---~~~~~--~~~~~~~v~~~~~s~d---g~~l~sg~~-d--------  571 (660)
                      ..+.|+|.|||+.+++-..|.|++++ ..+..   +..+.  ..........++++|+   ..+|+.... .        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            46789999999998887899999999 44443   22221  1123567889999994   334443333 1        


Q ss_pred             CeEEEEECCCC--e---eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC
Q 006126          572 GHVKVFDTSTL--E---LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG  625 (660)
Q Consensus       572 g~I~iwd~~~~--~---~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg  625 (660)
                      ..|.-|....+  .   ....+........+  .+...  .++|.| ||.+.++.++.+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~--~H~g~--~l~fgp-DG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSG--NHNGG--GLAFGP-DGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSS--SS-EE--EEEE-T-TSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCC--CCCCc--cccCCC-CCcEEEEeCCCC
Confidence            24444554433  1   11111111110111  22223  799999 888777776544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.58  E-value=0.86  Score=50.57  Aligned_cols=69  Identities=17%  Similarity=0.317  Sum_probs=42.1

Q ss_pred             EcCCC-eEEEEeCCCeEEEEeC-----CCCceeeEeeccC-CCeEEEEEeCCC---------CEEEEEeC-CCcEEEEEc
Q 006126          423 LLPQD-LFAFGFDDSSILVHCP-----CTKKTKAKLKGHQ-NRITCLAYSLSL---------NVLVSSGA-DAQLCVWDA  485 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~-----~~~~~~~~~~~~~-~~v~~l~~sp~~---------~~l~s~s~-dg~i~vwd~  485 (660)
                      .+||| .|+.+..||.++.|.+     ..-.+++.++.|. ++-.|.-++.+.         .++++++. +..+++|..
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            67888 8888888887666653     3335666777776 333343344322         13444443 456899988


Q ss_pred             CCCeee
Q 006126          486 VGWKKL  491 (660)
Q Consensus       486 ~~~~~~  491 (660)
                      ..+++.
T Consensus       323 a~w~Cl  328 (1283)
T KOG1916|consen  323 APWQCL  328 (1283)
T ss_pred             cchhhh
Confidence            876654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.08  E-value=15  Score=39.15  Aligned_cols=112  Identities=14%  Similarity=0.033  Sum_probs=61.1

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec-cCCCCCCeEEEEEecCC------cEEEEE--e
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQ------IHLLSI--H  526 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~------~~l~~~--~  526 (660)
                      -...+.|+|.|||++|++--..|.|++++..++.......+...... ..   .....|+++|+-      .+|.++  .
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge---~GLlglal~PdF~~~~~n~~lYvsyt~  105 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQH---NGLLGLALHPDFMQEKGNPYVYISYTY  105 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCC---CceeeEEECCCccccCCCcEEEEEEec
Confidence            34678899999998777655569999998765432111111111111 12   578899999884      344442  1


Q ss_pred             ---------cCcEEEEeCCCC-------ceee-eecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126          527 ---------EGQIDVYEAPTL-------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       527 ---------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                               ...|.-|.+...       +.+. .+... ....-..+.|.|||.+.++.++.
T Consensus       106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCcCCceEEECCCCcEEEEECCC
Confidence                     223544554311       1111 11111 11223467899999876655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.03  E-value=0.056  Score=55.49  Aligned_cols=144  Identities=13%  Similarity=0.124  Sum_probs=96.7

Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT  537 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~  537 (660)
                      -...|-|.+.-++.++.+..+..||-...     ..+.    ...+  +....++|..++..+++ . ..+.+.+||+.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le----~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~  106 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILE----LNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS  106 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcc-----eecc----cCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence            34568887777888898999999987652     1111    1111  45667899988888877 4 778999999975


Q ss_pred             CceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          538 LNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       538 ~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      ... +.+... .+....  +.|++.+..++.|...|.+.|++..+.+.+.+.        |  .+.-.+++.+|.+ . .
T Consensus       107 eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--------G--kh~RRgtq~av~l-E-d  171 (615)
T KOG2247|consen  107 EYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--------G--KHQRRGTQIAVTL-E-D  171 (615)
T ss_pred             hhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh--------c--ccccceeEEEecc-c-c
Confidence            432 222221 122222  789999999999988999999998877655443        3  1223355899988 4 4


Q ss_pred             EEEEEeCCCeEEE
Q 006126          617 RIALGLTNGRVHV  629 (660)
Q Consensus       617 ~l~s~s~Dg~v~i  629 (660)
                      +.+.++.|..+.+
T Consensus       172 ~vil~dcd~~L~v  184 (615)
T KOG2247|consen  172 YVILCDCDNTLSV  184 (615)
T ss_pred             eeeecCcHHHHHH
Confidence            6667666655443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.91  E-value=14  Score=31.69  Aligned_cols=106  Identities=16%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCc--------eeeEeeccCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEcCC
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~--------~~~~~~~~~~~v~~l~~sp-----~~~~l~s~s~dg~i~vwd~~~  487 (660)
                      .|.... .|++++.-+.|.|++.....        .+..+. -...|++++-.+     +...|+.|+ ...+..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            444445 78888889999999876432        334443 455677775543     234566655 56788999988


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEec----CCcEEEEEecCcEEEEeCCCCc
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLN  539 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~d~~i~iwd~~~~~  539 (660)
                      ...+..+.+.          ..|+++.+-.    +...+++|.+..|.-||..-.+
T Consensus        83 N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   83 NSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             CchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            5433323322          4677777632    3455666777888888874333

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.84  E-value=24  Score=34.26  Aligned_cols=176  Identities=13%  Similarity=0.068  Sum_probs=110.7

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe----eccCCCe
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL----KGHQNRI  459 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~----~~~~~~v  459 (660)
                      |..-+++. .+.|--.|..+|+..+.--+....-..|..-||| .-++-+.. -|.-.|.++.+.. +|    +......
T Consensus        73 G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~a~~nl  150 (353)
T COG4257          73 GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEHADANL  150 (353)
T ss_pred             CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-EeecccccCCCcc
Confidence            33444555 5666677888887766555555555677888888 44433333 5666676655432 22    2233556


Q ss_pred             EEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 006126          460 TCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ  529 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~  529 (660)
                      ....|.+.|++-+++...         +.|++|+.-              .|     ...+.|+..|||..-+++ .++.
T Consensus       151 et~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------qG-----~gpyGi~atpdGsvwyaslagna  211 (353)
T COG4257         151 ETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------QG-----GGPYGICATPDGSVWYASLAGNA  211 (353)
T ss_pred             cceeeCCCccEEEeeccccceecCcccCceeeeccC--------------CC-----CCCcceEECCCCcEEEEeccccc
Confidence            778899999888876532         123333321              12     356689999999988886 7778


Q ss_pred             EEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          530 IDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      |-..|..++.. ..+.. ......-..+--+|.|..-++-...+.++.||.....
T Consensus       212 iaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         212 IARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             eEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            88888877643 23322 1113344456667889888887778899999887654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.73  E-value=15  Score=36.73  Aligned_cols=149  Identities=14%  Similarity=0.027  Sum_probs=78.3

Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-----cEEEEE--ecCcEEEEeCCCCceeeeecCCCC--
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKM--  549 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~--  549 (660)
                      +|.+||+++++.+....+........   +.+..+.+....     .++..+  ..+.|.|+|+.+++..+.......  
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~---s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~  111 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPD---SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD  111 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TC---GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccc---cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence            67789999987665555442111112   578888887732     344444  446899999998876554432110  


Q ss_pred             ---------------CCCeEEEEEcc---CCCEEEEEecCCeEEEEECCCC-----eeEEEe-ecccccCCCCcCcccce
Q 006126          550 ---------------DLPITYATYSC---DGKCIYVSCKSGHVKVFDTSTL-----ELRCQI-NLTAYAQPGTISLELYP  605 (660)
Q Consensus       550 ---------------~~~v~~~~~s~---dg~~l~sg~~dg~I~iwd~~~~-----~~~~~~-~~~~~~~~gh~~~~v~~  605 (660)
                                     ...+..++.+|   +|++|+-+.-.+ -++|.+.+.     ...... ........|....  ..
T Consensus       112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~--~s  188 (287)
T PF03022_consen  112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS--QS  188 (287)
T ss_dssp             -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SE
T ss_pred             ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCC--CC
Confidence                           22355566654   556666554332 122332211     100000 0000001121111  12


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          606 LVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ..+++++ +|.++.+--..+.|..|+...
T Consensus       189 ~g~~~D~-~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  189 DGMAIDP-NGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             CEEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred             ceEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence            3788888 788888888999999999886

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.65  E-value=31  Score=35.25  Aligned_cols=151  Identities=13%  Similarity=0.048  Sum_probs=84.5

Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCe------EEEEeCCC--C--cee-----eEeeccCC--------CeEEEEEeCCCCEE
Q 006126          416 PIATYFILLPQD-LFAFGFDDSS------ILVHCPCT--K--KTK-----AKLKGHQN--------RITCLAYSLSLNVL  471 (660)
Q Consensus       416 ~~v~~v~~sp~~-~l~s~~~d~~------I~iwd~~~--~--~~~-----~~~~~~~~--------~v~~l~~sp~~~~l  471 (660)
                      +.+..+.+.+++ .+++.++++.      ++.+++..  +  ..+     ..+....+        ..-+|++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            456778888665 7777777777      66555543  1  111     11111111        33478887788888


Q ss_pred             EEEeCC------CcEEEEEcCCCeeeeceeeeeee--e----ccCCCCCCeEEEEEecCCcEEEEE------ecC--c--
Q 006126          472 VSSGAD------AQLCVWDAVGWKKLCSKFLHSFQ--T----GLVPETTIVNHIQFHPDQIHLLSI------HEG--Q--  529 (660)
Q Consensus       472 ~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~--~----~~~~~~~~v~~~~~sp~~~~l~~~------~d~--~--  529 (660)
                      ++.-.+      ..|+.++.. |.......+....  .    .........-+++++|+|+.|++.      .|+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            876666      778888876 5443333222111  0    000111578899999999955542      232  1  


Q ss_pred             -----EEE--EeCCC-Cceee--eecCCC-----CCCCeEEEEEccCCCEEEE
Q 006126          530 -----IDV--YEAPT-LNHTS--QLVPDK-----MDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       530 -----i~i--wd~~~-~~~~~--~~~~~~-----~~~~v~~~~~s~dg~~l~s  567 (660)
                           +++  ||..+ +....  .+....     ....+..+.+-+++++++.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                 444  55544 32222  222221     3577888999999997774

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.60  E-value=1.4  Score=29.25  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=25.7

Q ss_pred             CCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCC
Q 006126          457 NRITCLAYSLSL---NVLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       457 ~~v~~l~~sp~~---~~l~s~s~dg~i~vwd~~~  487 (660)
                      +.|.++.|+|+.   .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   4788877789999999995

It contains a characteristic DLL sequence motif.

>PRK10115 protease 2; Provisional

Probab=88.50  E-value=51  Score=37.61  Aligned_cols=240  Identities=8%  Similarity=0.011  Sum_probs=112.8

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      -.+..+.+||||++|+.+...+--.-+                .+.+.|..+|..+...+    ...-..++|.  ++.|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~----------------~l~v~d~~tg~~l~~~i----~~~~~~~~w~~D~~~~  186 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQY----------------GIRFRNLETGNWYPELL----DNVEPSFVWANDSWTF  186 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEE----------------EEEEEECCCCCCCCccc----cCcceEEEEeeCCCEE
Confidence            346678899999988877553211111                12344555554322111    1111457888  5555


Q ss_pred             EEEe-C------CcEEEEECCCC--eEEEEEcCCCCCeE-EEEEcCCC-eEEEEe---CCCeEEEEeCC--CCceeeEee
Q 006126          390 FSAS-G------GKISIFSLETF--QTLATFANPPPIAT-YFILLPQD-LFAFGF---DDSSILVHCPC--TKKTKAKLK  453 (660)
Q Consensus       390 ~s~~-d------g~I~iwd~~~~--~~~~~~~~~~~~v~-~v~~sp~~-~l~s~~---~d~~I~iwd~~--~~~~~~~~~  453 (660)
                      +.+. +      ..|..+++.++  +....+........ .+..+.++ .++..+   .++.+.+++..  ++.....+.
T Consensus       187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~  266 (686)
T PRK10115        187 YYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP  266 (686)
T ss_pred             EEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE
Confidence            4443 2      26888888887  44444543333333 33334466 433333   23578888843  343222222


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecC
Q 006126          454 GHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG  528 (660)
Q Consensus       454 ~~~~~v~~l~~sp~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~  528 (660)
                      ...+....+. +..+.+++....+   ..|...++...     .....+......  ..+..+.+.  +..|+. . .++
T Consensus       267 ~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~-----~~~~~l~~~~~~--~~i~~~~~~--~~~l~~~~~~~g  336 (686)
T PRK10115        267 RRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDE-----QQWEELIPPREN--IMLEGFTLF--TDWLVVEERQRG  336 (686)
T ss_pred             CCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCc-----ccCeEEECCCCC--CEEEEEEEE--CCEEEEEEEeCC
Confidence            2222222222 3333333332222   23444444420     111212222121  367778887  335554 3 454


Q ss_pred             --cEEEEeCCCCceeeeecCCCCCCCeEEEEEc--cCCC-EEEEEec---CCeEEEEECCCCe
Q 006126          529 --QIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSCK---SGHVKVFDTSTLE  583 (660)
Q Consensus       529 --~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~-~l~sg~~---dg~I~iwd~~~~~  583 (660)
                        .++++|...+ .+..+... ....+..+.++  +++. ++++.+.   -+.++.+|+.+++
T Consensus       337 ~~~l~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        337 LTSLRQINRKTR-EVIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEEEEcCCCC-ceEEecCC-CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence              4666665433 33444311 12223333444  4444 4444333   3789999998875

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.27  E-value=0.089  Score=54.06  Aligned_cols=149  Identities=15%  Similarity=0.119  Sum_probs=95.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |-.......|-|.+.-++.++.+..+..||-.....                     ..    ...++....++|.  ++
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---------------------le----~n~tg~aldm~wDkegd   87 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---------------------LE----LNPTGKALDMAWDKEGD   87 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhccee---------------------cc----cCCchhHhhhhhccccc
Confidence            334444556777776688888888887777443322                     00    0234445567777  55


Q ss_pred             EEEE-Ee-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          388 HLFS-AS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       388 ~l~s-~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      .++. +. .+.+.+||+.+..- +.+. +....-.-+.|++.. .++.+...+.+.+++..+.+.+-+.-.|..++++++
T Consensus        88 vlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a  166 (615)
T KOG2247|consen   88 VLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA  166 (615)
T ss_pred             hhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE
Confidence            4433 33 79999999975321 1121 111111226788888 888899999999999887766655555999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEc
Q 006126          464 YSLSLNVLVSSGADAQLCVWDA  485 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~  485 (660)
                      |.+.+ +.+.++.|..+.+-..
T Consensus       167 v~lEd-~vil~dcd~~L~v~~q  187 (615)
T KOG2247|consen  167 VTLED-YVILCDCDNTLSVTTQ  187 (615)
T ss_pred             ecccc-eeeecCcHHHHHHhhh
Confidence            99876 4555666665554433

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=88.18  E-value=30  Score=40.56  Aligned_cols=122  Identities=16%  Similarity=0.059  Sum_probs=67.8

Q ss_pred             ceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 006126          365 LVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC  442 (660)
Q Consensus       365 ~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd  442 (660)
                      ..++..+.+..+++|..++=...+|+++....|.+|+++.. ..+.. .--.-++.-....--. +|+.|.--+.|.+.-
T Consensus      1086 ~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~ 1164 (1366)
T KOG1896|consen 1086 NKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLG 1164 (1366)
T ss_pred             ceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEE
Confidence            34444444457788888777777888888899999999443 22211 1011112111111222 555555555555544


Q ss_pred             CCCC-ceeeEeec--cCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEcCC
Q 006126          443 PCTK-KTKAKLKG--HQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       443 ~~~~-~~~~~~~~--~~~~v~~l~~sp~~~--~l~s~s~dg~i~vwd~~~  487 (660)
                      .... ..+..+..  ..-.++++.|--||.  .++++..|+.|++|-..-
T Consensus      1165 fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1165 FQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred             EccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence            4322 12222211  234577778877665  467788899998886543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.07  E-value=28  Score=34.14  Aligned_cols=198  Identities=8%  Similarity=-0.071  Sum_probs=109.0

Q ss_pred             CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126          416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  493 (660)
Q Consensus       416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~  493 (660)
                      .-+..+.++.+ +...+..+.-++|.|+.+...-.....  ..+.-.++..  .|++...+..|.-+-+.|+.+.+.   
T Consensus        87 ~l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss---  160 (370)
T COG5276          87 DLFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS---  160 (370)
T ss_pred             hhhheeEeccc-EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC---
Confidence            34556666655 566666777899999887543322211  1133344444  688988888777778899987431   


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecC
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                      ..+.-......   ..-..++.|  |++-.+ ..|+.+.+.|+.+.... ++.++ .....+.++..+++..+++...  
T Consensus       161 P~lagrya~~~---~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP-vli~~~n~g~g~~sv~vsdnr~y~vvy~--  232 (370)
T COG5276         161 PQLAGRYALPG---GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP-VLIGSYNTGPGTYSVSVSDNRAYLVVYD--  232 (370)
T ss_pred             ceeeeeeccCC---CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC-eEEEEEecCCceEEEEecCCeeEEEEcc--
Confidence            11111111111   233466666  556665 48899999999764432 22221 1234788888887776766653  


Q ss_pred             CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          572 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       572 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      --+.+-|..+.+..+.+...  .    ...++.+..+..   .+++.-.+..+.-+-+-|+.+..
T Consensus       233 egvlivd~s~~ssp~~~gsy--e----t~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         233 EGVLIVDVSGPSSPTVFGSY--E----TSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             cceEEEecCCCCCceEeecc--c----cCCcccccceec---ccceeeeeccccCceeEeccCCC
Confidence            34667777765544433211  0    011111111221   35566666666666666665543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.99  E-value=16  Score=31.32  Aligned_cols=117  Identities=7%  Similarity=0.001  Sum_probs=70.8

Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCCeeee---ceeeeeeeeccCCCCCCeEEEEEec-----CCcEEEEEecCcEEEEe
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYE  534 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~d~~i~iwd  534 (660)
                      .|......|++++.-|+|.|++........   ...+..+--+     ..|++++-.+     +...|+.|....+..||
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----~~italaaG~l~~~~~~D~LliGt~t~llaYD   79 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----QEITALAAGRLKPDDGRDCLLIGTQTSLLAYD   79 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----CceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence            455555678888888899999876532111   1122211111     3566665443     34567779999999999


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEcc----CCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSC----DGKCIYVSCKSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~----dg~~l~sg~~dg~I~iwd~~~~~~~~~~  588 (660)
                      +.....+.--..   ...|.++.+..    +..++++| .+..|.-||....+..+..
T Consensus        80 V~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   80 VENNSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cccCchhhhhhC---ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence            987665433222   45577776642    33455555 4677888888777666554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.98  E-value=3.1  Score=39.61  Aligned_cols=70  Identities=13%  Similarity=0.080  Sum_probs=50.0

Q ss_pred             EecCCcEEEE-EecCcEEEEeCCCCceeeee------cCC------CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          515 FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL------VPD------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       515 ~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~------~~~------~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      +..++.++++ ..+|.+++||+.+++.+..-      ...      .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4556777777 79999999999988764332      110      1356788899998888777654 57889998775


Q ss_pred             CeeE
Q 006126          582 LELR  585 (660)
Q Consensus       582 ~~~~  585 (660)
                      +.=+
T Consensus        97 ~~W~  100 (219)
T PF07569_consen   97 GCWI  100 (219)
T ss_pred             ceeE
Confidence            5433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.91  E-value=39  Score=35.61  Aligned_cols=151  Identities=9%  Similarity=0.040  Sum_probs=82.0

Q ss_pred             CCCEEEEEeCCCcEEEEeccCcC-CC-cceeeeecCCCCCCCCeEEEEEec----CCCEEEEEECCCcEEEEeccCCcee
Q 006126          273 DADSAVCAKSLEKSVNLKLQLIN-EP-SECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       273 dg~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~~l~~~~h~~~V~~~~~sp----dg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +...|++|+..|.++||+..... .+ ..+....     -..+|..+..-+    .....++.=.-..+.||.+......
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT  110 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-----cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence            34689999999999999996422 11 1222322     367888887643    2223334455667777776322110


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCC--CCeEEEEEe-------CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR-------GSHLFSAS-GGKISIFSLETFQTLATFANPPP  416 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s-------~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~  416 (660)
                                    ...|...+......|.  .....++.-       .++|..-+ ||.+.+|+-+.....+.+.. .-
T Consensus       111 --------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l  175 (418)
T PF14727_consen  111 --------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL  175 (418)
T ss_pred             --------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence                          0011100000000121  222233322       13566666 99999999776554444432 11


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEeC
Q 006126          417 IATYFILLPQD-LFAFGFDDSSILVHCP  443 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~  443 (660)
                      --..+.+.+.. .|++++.+..+..|..
T Consensus       176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  176 LPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CCcCeEEeecCCEEEEecCceeEEEecH
Confidence            11245677766 8888888888887764

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=87.36  E-value=35  Score=34.41  Aligned_cols=232  Identities=12%  Similarity=-0.042  Sum_probs=113.4

Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCc--E
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGK--I  397 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~--I  397 (660)
                      ++++|+.|+.+|...+. +...                   .+...+.    .+...|+++...  -+.|++-+|+.  +
T Consensus        12 ~~~~lL~GTe~Gly~~~-~~~~-------------------~~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L   67 (302)
T smart00036       12 DGKWLLVGTEEGLYVLN-ISDQ-------------------PGTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQL   67 (302)
T ss_pred             CCcEEEEEeCCceEEEE-cccC-------------------CCCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceE
Confidence            34689999998877654 2211                   0112221    366789999988  56666666554  9


Q ss_pred             EEEECCCCeE---------------EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC----ceeeEe---e
Q 006126          398 SIFSLETFQT---------------LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKL---K  453 (660)
Q Consensus       398 ~iwd~~~~~~---------------~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~----~~~~~~---~  453 (660)
                      +.+++..-..               ....-.+..+..-+......  .++++....+|.++.....    ...+.+   .
T Consensus        68 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~  147 (302)
T smart00036       68 YSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFP  147 (302)
T ss_pred             EEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccccc
Confidence            9999843221               01111344434333333322  4455555666666533211    111110   0


Q ss_pred             -ccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCC--CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecC
Q 006126          454 -GHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG  528 (660)
Q Consensus       454 -~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~  528 (660)
                       ....++..+..+++  ...+..|+..+...++++..  ... ....+........   ....++..-+++.++ .+.|.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~-~d~sl~~~~~~~~---~~p~~i~~l~~~e~L-lc~~~  222 (302)
T smart00036      148 LISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSK-EDLSLPFLSEETS---LKPISVVQVPRDEFL-LCYDE  222 (302)
T ss_pred             CCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccc-ccccccccccccc---cCceEEEEECCCeEE-EEECc
Confidence             01223333333332  45677777653444555533  110 0011110000000   023334444455444 44455


Q ss_pred             cEEEEeCCCC-ceee--eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          529 QIDVYEAPTL-NHTS--QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       529 ~i~iwd~~~~-~~~~--~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      ...+.|.. | +..+  .+.   -.....++++.  ..+|+.-.. ..|.|+++.+++.++.+.
T Consensus       223 ~~v~Vn~~-G~~~~r~~~l~---w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      223 FGVFVNLY-GKRRSRNPILH---WEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELA  279 (302)
T ss_pred             EEEEEeCC-CCccccceEEE---cCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEe
Confidence            55555653 3 2211  221   24556677776  466766654 559999999999888876

Unpublished observations.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.25  E-value=3  Score=27.80  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=25.3

Q ss_pred             CCeEEEEEccCC---CEEEEEecCCeEEEEECCC
Q 006126          551 LPITYATYSCDG---KCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       551 ~~v~~~~~s~dg---~~l~sg~~dg~I~iwd~~~  581 (660)
                      +.|.++.|||+.   ++|+..-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999754   4787777779999999995

It contains a characteristic DLL sequence motif.

>PRK13684 Ycf48-like protein; Provisional

Probab=87.18  E-value=38  Score=34.70  Aligned_cols=155  Identities=6%  Similarity=-0.029  Sum_probs=86.4

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEE-EeCCCCceeeEe-eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  491 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~i-wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~  491 (660)
                      ...+.++.+.|++ .++++ ..|.+.. +| ..++.-... ..-...++++.+.++++.++++ ..|.+++=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            4567889999988 55544 4554443 22 222222222 2344678899999998876654 4676653223332210


Q ss_pred             eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEec
Q 006126          492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                        ..+. ......  ...+.++.+.|++..++++.+|.+.. ....++.-..... ..-....+.+.|..+++.+++| .
T Consensus       249 --~~~~-~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~  321 (334)
T PRK13684        249 --SKPI-IPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q  321 (334)
T ss_pred             --cccc-CCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence              1111 110100  03578899999988888888886653 3444443333321 1113467788887776666554 6


Q ss_pred             CCeEEEEEC
Q 006126          571 SGHVKVFDT  579 (660)
Q Consensus       571 dg~I~iwd~  579 (660)
                      .|.|--|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            687776653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.01  E-value=16  Score=37.84  Aligned_cols=140  Identities=12%  Similarity=0.017  Sum_probs=75.3

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126          461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN  539 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~  539 (660)
                      .+-|. |.+..+.+...|.+.=|-++....  ..++. ......   ++|.++.||+|.+.+++ -.+++|.+++..-.+
T Consensus        27 gvFfD-DaNkqlfavrSggatgvvvkgpnd--DVpiS-fdm~d~---G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   27 GVFFD-DANKQLFAVRSGGATGVVVKGPND--DVPIS-FDMDDK---GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             ceeec-cCcceEEEEecCCeeEEEEeCCCC--CCCce-eeecCC---CceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence            34344 333333344455555666554221  12222 111222   68999999999999999 689999999974322


Q ss_pred             eeee--ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126          540 HTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR  617 (660)
Q Consensus       540 ~~~~--~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~  617 (660)
                      ....  .........|...+|+.+ .-+|.....| +-+|.....+..-.+..         ...+++.-..|.| +.+.
T Consensus       100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk---------s~~~nvnWy~yc~-et~v  167 (657)
T KOG2377|consen  100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK---------SHNLNVNWYMYCP-ETAV  167 (657)
T ss_pred             hhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh---------hcccCccEEEEcc-ccce
Confidence            2111  111112556889999866 4555554444 66666544321111110         1223344788888 5565


Q ss_pred             EE
Q 006126          618 IA  619 (660)
Q Consensus       618 l~  619 (660)
                      +.
T Consensus       168 ~L  169 (657)
T KOG2377|consen  168 IL  169 (657)
T ss_pred             Ee
Confidence            43

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=86.88  E-value=33  Score=33.67  Aligned_cols=265  Identities=11%  Similarity=0.051  Sum_probs=135.9

Q ss_pred             CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126          274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      +++...+..+.-++|.|+.+...+.+.-.+.+     .+--.++  .-.|++...+.-|.-..+.|+....         
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-----~gyaygv--~vsGn~aYVadlddgfLivdvsdps---------  159 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-----DGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPS---------  159 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccC-----CceEEEE--EecCCEEEEeeccCcEEEEECCCCC---------
Confidence            56777777888899999998655555544321     1223333  3457888777755444456654432         


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeE---EEEEcCCCCCeEEEEEcCCC-e
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFILLPQD-L  428 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~sp~~-~  428 (660)
                               +..+.....  .....-..++.+|++-..+. |+-+.+-|+.....   +... .....+.++..+++- +
T Consensus       160 ---------sP~lagrya--~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y  227 (370)
T COG5276         160 ---------SPQLAGRYA--LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAY  227 (370)
T ss_pred             ---------Cceeeeeec--cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeE
Confidence                     222222111  23344467788888777776 99999999875432   2222 222367777777765 4


Q ss_pred             EEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEE-EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126          429 FAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCL-AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       429 l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l-~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                      ++..  +--+.+-|..+.+....+-. ....+.++ .+.-.+++......+.-+.+-|+.+..      -. +..++-+.
T Consensus       228 ~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~------sp-fl~ss~~t  298 (370)
T COG5276         228 LVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP------SP-FLSSSLDT  298 (370)
T ss_pred             EEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC------CC-chhccccC
Confidence            4433  33456667665543333322 12222222 233346677667777777777776621      11 11111100


Q ss_pred             CC-CeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          507 TT-IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       507 ~~-~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      .+ .-..+..+  +.++.........+-|....+......+  ....+.+.+.+-+.+.+.+...++-+.||+.
T Consensus       299 ~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         299 AGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             CCccccceEEe--cCeeEeccCCceEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            00 11222222  3333333222334444432222111111  1222334444555667888888888888875

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.42  E-value=18  Score=40.14  Aligned_cols=134  Identities=9%  Similarity=0.037  Sum_probs=70.9

Q ss_pred             EEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCe
Q 006126          420 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWK  489 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~  489 (660)
                      -+.|..|. +.+++...    ..+++|.- .|+.-..-....+.-..+.|-|.|..+++-..||     .|.++..+. -
T Consensus       206 ~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-L  283 (1243)
T COG5290         206 IIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-L  283 (1243)
T ss_pred             EEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC-c
Confidence            35565555 55554432    24666652 3432222222333445678999999999877665     355554332 1


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK  563 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~  563 (660)
                      ......+.   .+..   ..+..++|+-....++++..+.+.+|-..+....-....  .-..+.-+.|+|..+
T Consensus       284 rHGef~lr---~~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~--~ip~~s~vkwhpe~~  349 (1243)
T COG5290         284 RHGEFDLR---VGCD---EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVER--QIPGISYVKWHPEEK  349 (1243)
T ss_pred             ccCCcccc---CCch---hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEee--cCCCcceeeeccccC
Confidence            10011111   1111   345567787777777777788899998765443222111  133455567777543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.83  E-value=21  Score=38.04  Aligned_cols=109  Identities=12%  Similarity=-0.014  Sum_probs=61.8

Q ss_pred             CeEEEEEecCCcEEEEEe-cCcEEEEeCCCCce--eeeec---CCCCCCCeEEEEEccCC------CEEEEEe-------
Q 006126          509 IVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH--TSQLV---PDKMDLPITYATYSCDG------KCIYVSC-------  569 (660)
Q Consensus       509 ~v~~~~~sp~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~s~dg------~~l~sg~-------  569 (660)
                      ....|+|.|||+.+++-. .|.|++++..++..  +..+.   ..........++++|+-      .+|+...       
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~  110 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK  110 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence            577899999999888866 69999998655432  22121   11125678899999874      3455432       


Q ss_pred             ---cCCeEEEEECCCC--ee---EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          570 ---KSGHVKVFDTSTL--EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       570 ---~dg~I~iwd~~~~--~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                         ....|.-|.+...  .+   ...+..   .+.+ ..+.-.  .++|.| ||.+.++.++.
T Consensus       111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~---lP~~-~~H~Gg--rI~FgP-DG~LYVs~GD~  166 (454)
T TIGR03606       111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAG---LPAG-NDHNGG--RLVFGP-DGKIYYTIGEQ  166 (454)
T ss_pred             CccCCcEEEEEEecCCCCccccceEEEec---CCCC-CCcCCc--eEEECC-CCcEEEEECCC
Confidence               1234544554321  11   111211   1111 012222  788999 88877766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=85.51  E-value=0.8  Score=35.39  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHhhhcccccc
Q 006126           66 EELIYLIHQFLNEEEFKETLHKLEQETRVFFD   97 (660)
Q Consensus        66 ~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~   97 (660)
                      .=++-||..||+=+||+.|+..|+-|+|.+-.
T Consensus        19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~   50 (81)
T PF09398_consen   19 RLINELIREYLEFNNLDYTLSVFQPESGQPEE   50 (81)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred             HHHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence            34788999999999999999999999998653

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.94  E-value=21  Score=33.41  Aligned_cols=58  Identities=29%  Similarity=0.317  Sum_probs=39.2

Q ss_pred             EecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC
Q 006126          269 TSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT  332 (660)
Q Consensus       269 ~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d  332 (660)
                      .+.+-| +.|..+...+.|.+|++.+.. -.....  ++   .-+.|..+.++..|+||+|--.+
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~-~~~~~~--F~---Tv~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEE-CPLLCT--FS---TVGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCC-CceeEE--Ec---chhheeEEEeccccceEEEEEee
Confidence            344445 566555777889999998311 112222  33   35899999999999999997653

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.82  E-value=12  Score=41.36  Aligned_cols=94  Identities=9%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC---CceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          315 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS---KLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       315 ~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      ..+.|-|+|..+++-+.||.-.                +..+..+..++   |.+-.   ..+-...+..++|+  ...+
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~----------------S~~ViFfErNGLrHGef~l---r~~~dEk~~~~~wn~~s~vl  310 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCST----------------SESVIFFERNGLRHGEFDL---RVGCDEKAFLENWNLLSTVL  310 (1243)
T ss_pred             hccccccCCceeeeeccCCCCC----------------cceEEEEccCCcccCCccc---cCCchhhhhhhhhhHHHHHH
Confidence            3488999999999988664210                11112222211   11100   00334456677787  4455


Q ss_pred             EEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 006126          390 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD  427 (660)
Q Consensus       390 ~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~  427 (660)
                      +.+..+.+++|-...........-.-..+.-+.|+|..
T Consensus       311 av~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         311 AVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             HHhhcceEEEEEccceEEEEEEeecCCCcceeeecccc
Confidence            55558899999877655443333344567788999976

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.74  E-value=11  Score=34.51  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             eEEEEEecC-----CCCEEEEEeCCCeEEEEeCCCC-ceeccCCC
Q 006126          605 PLVIAAHPL-----EPNRIALGLTNGRVHVIEPLES-EVEWGKLP  643 (660)
Q Consensus       605 ~~~v~~sp~-----d~~~l~s~s~Dg~v~iw~~~~~-~~~w~~~~  643 (660)
                      +..++|||.     .+.+||+.+.+|.|.||..... ...|....
T Consensus        88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~  132 (173)
T PF12657_consen   88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVA  132 (173)
T ss_pred             EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeee
Confidence            558999993     1347999999999999998876 66775443

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=83.64  E-value=1.4  Score=38.95  Aligned_cols=50  Identities=18%  Similarity=0.162  Sum_probs=35.7

Q ss_pred             HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHHhhhc
Q 006126           98 INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQ  148 (660)
Q Consensus        98 ~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lell~~~  148 (660)
                      ...++++|++|++++|++.+....+.-...-+.. .+.|+.|+|+|++..+
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L-~f~L~~q~fiell~~~   54 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSL-EFELRCQQFIELLREG   54 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCch-hHHHHHHHHHHHHHHH
Confidence            5678999999999999999865411111111233 3449999999999976

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.47  E-value=1e+02  Score=36.77  Aligned_cols=75  Identities=11%  Similarity=0.056  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEEcCCCeEEEEeCCCeEEE--EeCCCC---c-e----------------eeEee-ccCCCeEEEEEeCCCC
Q 006126          413 NPPPIATYFILLPQDLFAFGFDDSSILV--HCPCTK---K-T----------------KAKLK-GHQNRITCLAYSLSLN  469 (660)
Q Consensus       413 ~~~~~v~~v~~sp~~~l~s~~~d~~I~i--wd~~~~---~-~----------------~~~~~-~~~~~v~~l~~sp~~~  469 (660)
                      .....|+|+....+|.++.+|.||.|+-  |....|   + +                +-.+. .+..+|..++....-.
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            3456788998777886666666774432  222211   1 1                11223 4667888998887777


Q ss_pred             EEEEEeCCCcEEEEEcCC
Q 006126          470 VLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       470 ~l~s~s~dg~i~vwd~~~  487 (660)
                      .+.+-+..|+|.+||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            888888899999999876

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.33  E-value=24  Score=37.16  Aligned_cols=142  Identities=12%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-------EEEEEeCCCcEEEEEcCCCe-eeeceeeeee
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-------VLVSSGADAQLCVWDAVGWK-KLCSKFLHSF  499 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-------~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~  499 (660)
                      .+..|+....++-.|++.|+.+..+..|...  -+.|.|+.+       .-++|-.+..|.-.|.+-.. .+...... -
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK-d  558 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK-D  558 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh-h
Confidence            4556666678888999999999999877654  456777532       22345556666666665421 11111111 0


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      ..+.    ....+..-..+| ++++ +..|.|++||-- |...++..+ .-...|..+..+.+|+++++.+. ..+.+-|
T Consensus       559 Y~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRi-g~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d  630 (776)
T COG5167         559 YKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRI-GKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTD  630 (776)
T ss_pred             cccc----ccccccccccCc-eEEEecCCCceeeehhh-cchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence            0111    123333333344 5555 788999999953 333333333 23778999999999999888765 4566666


Q ss_pred             CC
Q 006126          579 TS  580 (660)
Q Consensus       579 ~~  580 (660)
                      +.
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            54

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.23  E-value=82  Score=35.10  Aligned_cols=166  Identities=10%  Similarity=0.143  Sum_probs=89.9

Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec------CCcEEEE-Ee-
Q 006126          455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLS-IH-  526 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~~-~~-  526 (660)
                      -...|-.+.|.++++.+++...+|.|.+||...+.......   ....+..  .-+.+ .|-+      ...++++ +. 
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~---l~~~~~~--~v~ys-~fv~~~~~~~~~~~ll~v~~~  201 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ---LKLKSSI--NVSYS-KFVNDFELENGKDLLLTVSQL  201 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccc---ccccccc--ceehh-hhhcccccccCCceEEEEEEc
Confidence            35688899999999999999999999999994322111111   1112210  01111 2222      2334444 43 


Q ss_pred             c---CcEEEEeCC-CCceeeeecC-CCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          527 E---GQIDVYEAP-TLNHTSQLVP-DKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       527 d---~~i~iwd~~-~~~~~~~~~~-~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      +   -+.+++.+. +...+..+.. ..+........|.. +|....-  .++.|.+|++.+.+....+.......... .
T Consensus       202 ~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~  278 (670)
T PF10395_consen  202 SNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-D  278 (670)
T ss_pred             CCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-c
Confidence            2   257777771 1222222210 01123333444443 4543333  67899999999998888887654433221 1


Q ss_pred             cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                         .  .+++.|-..++++-+ .+++|++.|+.-.
T Consensus       279 ---~--~vSl~~~s~nRvLLs-~~nkIyLld~~~~  307 (670)
T PF10395_consen  279 ---D--LVSLKPPSPNRVLLS-VNNKIYLLDLKFE  307 (670)
T ss_pred             ---c--ceEeecCCCCeEEEE-cCCEEEEEeehhh
Confidence               1  233333344555544 4678999998654

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=82.89  E-value=18  Score=37.53  Aligned_cols=161  Identities=11%  Similarity=0.116  Sum_probs=85.7

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeE-EEEEecCCcEEEE-EecCcEEEE-
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLLS-IHEGQIDVY-  533 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~-~~d~~i~iw-  533 (660)
                      ..|..+-..|||+.+..-+. ..+.++++.+......+.+. ...+...  ..|+ .+..-..|.-+++ ..||.|.-| 
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~-dspg~~~--~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVD-DSPGDSR--HQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhh-cCCCchH--HHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            44566778899998887665 78889988774433222222 1111000  1122 1222223444444 577877666 


Q ss_pred             eCCCCce-----eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126          534 EAPTLNH-----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       534 d~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      |++.+..     ++.+..  ...++..+.-..+.+-+++-..+|.+.++.....+.+-.-..         -....  -+
T Consensus       297 dvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---------~~~~~--~~  363 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---------YQAPQ--LV  363 (733)
T ss_pred             eeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---------hcCcc--ee
Confidence            5543221     111111  012222222223345566777778888776555443322111         11122  68


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          609 AAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ++|| ++.++++- +.|.++++.+++..
T Consensus       364 ~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         364 AMSP-NQAYLLSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             eeCc-ccchheee-cCCceEEEEecCCC
Confidence            9999 88998875 56789999988764

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.75  E-value=18  Score=42.73  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=88.2

Q ss_pred             eCCCeEEEEeCCCCceeeEeeccCCCeEEEEE--------eCCCCEEEEEeCCCcEEEEEcCCCeeeecee-e-eeeeec
Q 006126          433 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKF-L-HSFQTG  502 (660)
Q Consensus       433 ~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~--------sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~-~~~~~~  502 (660)
                      +.|+.+.+|+.+++.....+.+....|..+..        -|.=++++..+.--.|.++-+.-.+...... . ....-+
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45889999999998777777776666665543        2222344444444455555443211100000 0 000001


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEEecCcEEEEe--CCCC---c-ee----------------eeecCCCCCCCeEEEEEcc
Q 006126          503 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE--APTL---N-HT----------------SQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd--~~~~---~-~~----------------~~~~~~~~~~~v~~~~~s~  560 (660)
                      -++  ..|.++....+|+.+++|.||.|+=.-  ..++   + +-                ..+. ..+..+|..++++.
T Consensus       176 ~dg--~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDG--VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITIDN  252 (1311)
T ss_pred             cCC--ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEecc
Confidence            111  568899989999999999888543221  1111   1 10                0111 13467899999998


Q ss_pred             CCCEEEEEecCCeEEEEECCC
Q 006126          561 DGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       561 dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      ..+.+++-++.|+|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            889999999999999999986

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.65  E-value=1e+02  Score=35.76  Aligned_cols=122  Identities=20%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             CCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee---ccC---C-CCCCeEEEEEecCCcEEEEEecC
Q 006126          457 NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLV---P-ETTIVNHIQFHPDQIHLLSIHEG  528 (660)
Q Consensus       457 ~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~---~-~~~~v~~~~~sp~~~~l~~~~d~  528 (660)
                      .+...++|+| +.+.||+....|...|||+..........+. ...   |+-   + ..+.-..+.|.++...|+++...
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence            4567899998 5568999999999999999322221111111 111   110   0 00234478899998999998889


Q ss_pred             cEEEEeCCCCceeeeecCCCCCCCeEEEEEccC--CCEEEEEecCCeEEEEECCC
Q 006126          529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~sg~~dg~I~iwd~~~  581 (660)
                      .+.++|+++......+........|..+.-+|+  +..++..  ...|...++..
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            999999987765332222223567888888876  3333222  25677777776

These proteins are found in fungi.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=81.99  E-value=58  Score=32.53  Aligned_cols=106  Identities=11%  Similarity=-0.060  Sum_probs=59.3

Q ss_pred             EEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC
Q 006126          440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  519 (660)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  519 (660)
                      ++|+.+++.+..  +. ....+..|+ +|++.++-+..|.+.-+|.++|+......+.          +....+.|.  |
T Consensus       189 vidv~s~evl~~--GL-smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vp----------G~~rGL~f~--G  252 (335)
T TIGR03032       189 VIDIPSGEVVAS--GL-SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP----------GFTRGLAFA--G  252 (335)
T ss_pred             EEEeCCCCEEEc--Cc-cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECC----------CCCccccee--C
Confidence            467666655421  10 111223354 6788888888999999999876532221111          456788888  7


Q ss_pred             cEEEEEe-----c----------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126          520 IHLLSIH-----E----------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       520 ~~l~~~~-----d----------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      .++++|.     +                ..|.+.|+++|..+..+.....-..+.++++-|.
T Consensus       253 ~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       253 DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence            7777641     1                1255666666665555544322334445554443

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=81.74  E-value=26  Score=33.84  Aligned_cols=144  Identities=17%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-C--CeEEEEeCCCCceeeEee------ccCCCeEEEEEeCC
Q 006126          398 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D--SSILVHCPCTKKTKAKLK------GHQNRITCLAYSLS  467 (660)
Q Consensus       398 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d--~~I~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~  467 (660)
                      .+||+.+++....-......+.+-.+-+|| ++.+|+. +  ..+++++..+...-..+.      .....-.+...-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            478888876533222233333445677899 7777764 2  368888865410000111      12223334556789


Q ss_pred             CCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeee---ccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeee
Q 006126          468 LNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQT---GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       468 ~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~  543 (660)
                      |+.|+.|+.+. +..+|.-+.... ....+. +..   ...+ ...-.-+...|+|+.++.+..+ -.|||..+.+.++.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~-~~~~~~-~l~~~~~~~~-~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~  204 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGP-GPVTLP-FLSQTSDTLP-NNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRT  204 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCC-Cceeee-cchhhhccCc-cccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEee
Confidence            99999988774 344554422100 001111 000   0000 0122356778999999887554 45779888877666


Q ss_pred             ec
Q 006126          544 LV  545 (660)
Q Consensus       544 ~~  545 (660)
                      +.
T Consensus       205 lP  206 (243)
T PF07250_consen  205 LP  206 (243)
T ss_pred             CC
Confidence            64

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=81.42  E-value=84  Score=33.97  Aligned_cols=272  Identities=14%  Similarity=0.119  Sum_probs=128.7

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL  389 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l  389 (660)
                      ..+|..+.+...|. +-.|+.||..+ |                     |..+++.++.... ....+|..+..+ +..+
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dGL~~-f---------------------d~~~gkalql~s~-~~dk~I~al~~d~qg~L  219 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDGLSY-F---------------------DAGRGKALQLASP-PLDKAINALIADVQGRL  219 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCcceE-E---------------------ccccceEEEcCCC-cchhhHHHHHHHhcCcE
Confidence            56888898988886 56666676543 3                     3333333332211 122456666666 7788


Q ss_pred             EEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeC
Q 006126          390 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL  466 (660)
Q Consensus       390 ~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp  466 (660)
                      ..|+|.-|.+.+.+..+...... -....|..+.-..+|.+-.|+..|..+.--.+.+-.....+.|  -+.|.++....
T Consensus       220 WVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~  299 (671)
T COG3292         220 WVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT  299 (671)
T ss_pred             EEEeccceEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc
Confidence            88888778888776522221111 1223344333333446667777765543333322222222222  23456665555


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEE-EecCcEEEEeCCCCceeee
Q 006126          467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~-~~d~~i~iwd~~~~~~~~~  543 (660)
                      +|. |-+++.+|.+++-+-. +..  ...+. ...|     ..+...+..|  .+..+-. -+.|.+.+-+-.+|..+..
T Consensus       300 dGs-LWv~t~~giv~~~~a~-w~~--ma~in-~~dG-----~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~s  369 (671)
T COG3292         300 DGS-LWVGTYGGIVRYLTAD-WKR--MAVIN-DSDG-----GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRS  369 (671)
T ss_pred             CCC-EeeeccCceEEEecch-hhh--eeeee-cCCC-----chhhhhccCchhcccceeeccccceEEEecCCCCcEEEE
Confidence            664 4455656555443221 110  00011 0001     1111222222  1111111 1223344444455655555


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      ...- ....|+.+++..+|..-+..-.+| +..|+.++ +-......       |--..++.  .+.=.| +++ |-.|+
T Consensus       370 v~q~-Rg~nit~~~~d~~g~lWlgs~q~G-Lsrl~n~n~~avlde~a-------gl~ss~V~--aived~-dns-LWIGT  436 (671)
T COG3292         370 VHQL-RGMNITTTLEDSRGRLWLGSMQNG-LSRLDNKNEWAVLDEDA-------GLPSSEVS--AIVEDP-DNS-LWIGT  436 (671)
T ss_pred             eeec-cccccchhhhccCCcEEEEecccc-hhhhccCCccccccccc-------CCccccee--eeeecC-CCC-EEEec
Confidence            4321 256677788877666554444445 55566655 32222221       11122333  566667 455 67777


Q ss_pred             CCCeEEE
Q 006126          623 TNGRVHV  629 (660)
Q Consensus       623 ~Dg~v~i  629 (660)
                      .+|.++.
T Consensus       437 s~Glvk~  443 (671)
T COG3292         437 SGGLVKR  443 (671)
T ss_pred             cCCeEec
Confidence            7776554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=81.39  E-value=5.6  Score=25.99  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=24.3

Q ss_pred             cCCcEEEEE--ecCcEEEEeCCCCceeeeecC
Q 006126          517 PDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       517 p~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~  546 (660)
                      |++++|+++  .+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            577877774  578999999999888888765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	660
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.58
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.48
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.37
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.33
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.3
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.24
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.23
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.05
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.96
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.96
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.94
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.93
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.93
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.87
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.86
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.84
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.81
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.77
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.74
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.73
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.72
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.62
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	98.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.51
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.43
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.43
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.39
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.36
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.36
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.28
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.24
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.19
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.13
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.12
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.08
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.04
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.93
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.92
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.85
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.77
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.72
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.64
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.63
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.57
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.53
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.41
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.34
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.32
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.19
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.18
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.15
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.12
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	97.11
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.05
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.03
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.99
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.97
3ott_A	758	Two-component system sensor histidine kinase; beta	96.95
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.64
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.52
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.5
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.38
3ott_A	758	Two-component system sensor histidine kinase; beta	96.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.29
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.28
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.07
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.78
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.58
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.55
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.16
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.09
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.91
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.72
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.76
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.38
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.09
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.54
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.52
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.57
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	86.38
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	84.86
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.74

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-48  Score=412.01  Aligned_cols=280  Identities=18%  Similarity=0.214  Sum_probs=250.5

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.++|.+++|+|++++|++|+.||+|++||+.++..                     ...+  .+|...|.+++|+  +
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------~~~l--~~h~~~V~~v~~~~~~  162 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------ERTL--KGHTDSVQDISFDHSG  162 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------CEEE--CCCSSCEEEEEECTTS
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------EEEE--eccCCcEEEEEEcCCC
Confidence            3999999999999999999999999999999876653                     1111  1799999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      ++|++|+ |++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|++|++||++++.++..+.+|...|.++.|
T Consensus       163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  242 (410)
T 1vyh_C          163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  242 (410)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence            8999999 9999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--------------------CcEEEE
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QIHLLS  524 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------------------~~~l~~  524 (660)
                      +|++.++++++.|++|++||+++++.     .. ...+|.   ..|.+++|+|+                    |.++++
T Consensus       243 ~~~g~~l~s~s~D~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          243 NQDGTLIASCSNDQTVRVWVVATKEC-----KA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCce-----ee-EecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence            99999999999999999999998543     22 345666   68999999996                    667888


Q ss_pred             -EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126          525 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL  603 (660)
Q Consensus       525 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v  603 (660)
                       +.|+.|++||++++.++..+.+  |...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.       +| ...+
T Consensus       314 gs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-------~h-~~~v  383 (410)
T 1vyh_C          314 GSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------AH-EHFV  383 (410)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------CC-SSCE
T ss_pred             EeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-------CC-CCcE
Confidence             5899999999999999988865  68899999999999999999999999999999999888876       44 4445


Q ss_pred             ceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .  +++|+| ++.+|++|+.||+|+||++.
T Consensus       384 ~--~l~~~~-~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          384 T--SLDFHK-TAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             E--EEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred             E--EEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence            4  999999 89999999999999999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.2e-44  Score=402.45  Aligned_cols=365  Identities=13%  Similarity=0.114  Sum_probs=285.0

Q ss_pred             CCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126          241 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY  319 (660)
Q Consensus       241 ~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~  319 (660)
                      ++.....|.||.. |..           +.|||||++||+|+.||+|+|||+...   .......+..  |.++|.+++|
T Consensus        48 ~~~~~~~~~~h~~~v~~-----------~~~spdg~~lasg~~d~~v~lWd~~~~---~~~~~~~~~~--~~~~v~~v~f  111 (611)
T 1nr0_A           48 SLTDTEIYTEHSHQTTV-----------AKTSPSGYYCASGDVHGNVRIWDTTQT---THILKTTIPV--FSGPVKDISW  111 (611)
T ss_dssp             CSSCCEEECCCSSCEEE-----------EEECTTSSEEEEEETTSEEEEEESSST---TCCEEEEEEC--SSSCEEEEEE
T ss_pred             CcccCeEecCCCCceEE-----------EEECCCCcEEEEEeCCCCEEEeECCCC---cceeeEeecc--cCCceEEEEE
Confidence            3445556666665 444           499999999999999999999998632   1222223433  8999999999


Q ss_pred             ecCCCEEEEEECC----CcEEEEeccCCce--------------------eeeeeccceeEEEecCCCCceeeecccCCC
Q 006126          320 SHSGDFLVALTQT----ATHKLWKWQSNKQ--------------------SLEEENVNMESQLYQPSSKLVMTNDIAADP  375 (660)
Q Consensus       320 spdg~~l~s~s~d----g~i~vw~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  375 (660)
                      +|+|++|++++.+    +.|++||......                    .+...+.+..+++|+..++.+...+.  +|
T Consensus       112 s~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H  189 (611)
T 1nr0_A          112 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EH  189 (611)
T ss_dssp             CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CC
T ss_pred             CCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cc
Confidence            9999999999875    4788887432111                    12234556678999988877665443  79


Q ss_pred             CCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-------CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC
Q 006126          376 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~  444 (660)
                      ...|.+++|+  +++|++++ |++|++||+.++++...+.       +|...|.+++|+|++ +|++++.|++|++||+.
T Consensus       190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999  88999999 9999999999999988884       799999999999999 99999999999999998


Q ss_pred             CCceee-------------------------------------------EeeccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126          445 TKKTKA-------------------------------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLC  481 (660)
Q Consensus       445 ~~~~~~-------------------------------------------~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  481 (660)
                      +++++.                                           .+.+|...|++++|+|+|++|++++.|++|+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~  349 (611)
T 1nr0_A          270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN  349 (611)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence            876543                                           3357899999999999999999999999999


Q ss_pred             EEEcCCCeeeecee------eee-------------------e-------------------------------------
Q 006126          482 VWDAVGWKKLCSKF------LHS-------------------F-------------------------------------  499 (660)
Q Consensus       482 vwd~~~~~~~~~~~------~~~-------------------~-------------------------------------  499 (660)
                      +||+.++.......      +..                   +                                     
T Consensus       350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~  429 (611)
T 1nr0_A          350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA  429 (611)
T ss_dssp             EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred             EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence            99998764321100      000                   0                                     


Q ss_pred             --------------eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCE
Q 006126          500 --------------QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC  564 (660)
Q Consensus       500 --------------~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~  564 (660)
                                    ...|.   ..+.+++|+|||++|++ +.|++|++||+.++....... ..|...|++++|+|||++
T Consensus       430 ~~~~v~~~~~~~~~~~~~~---~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~  505 (611)
T 1nr0_A          430 CYKHIAIYSHGKLTEVPIS---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAF  505 (611)
T ss_dssp             ESSEEEEEETTEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSE
T ss_pred             eCceEEEEeCCceeeeecC---CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCE
Confidence                          00011   35789999999999999 589999999997765422111 247899999999999999


Q ss_pred             EEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          565 IYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       565 l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      |++++.|+.|++|++.+ +++.....     ..+| ...|+  +++|+| |+++||+|+.|++|+||++.+++
T Consensus       506 las~s~d~~v~~w~~~~~~~~~~~~~-----~~~H-~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          506 LVATDQSRKVIPYSVANNFELAHTNS-----WTFH-TAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             EEEEETTSCEEEEEGGGTTEESCCCC-----CCCC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTT
T ss_pred             EEEEcCCCCEEEEEcCCCCceeeeee-----eeec-cccee--EEEECC-CCCEEEEEECCCcEEEEECCCcc
Confidence            99999999999999987 55433211     1124 44455  999999 89999999999999999998765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.2e-43  Score=390.21  Aligned_cols=339  Identities=13%  Similarity=0.083  Sum_probs=273.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC-----CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-----DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~-----~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~  342 (660)
                      +.|+|||++|++++.|++|++||...    +..... +.     ..+|.+.|.+++|+|+|++|++++.|++|++||+.+
T Consensus       196 v~fspdg~~las~s~D~~i~lwd~~~----g~~~~~-~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          196 VRYNPDGSLFASTGGDGTIVLYNGVD----GTKTGV-FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEECCCcEEEEECCC----CcEeee-eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            49999999999999999999999874    333221 21     125999999999999999999999999999999987


Q ss_pred             Cceeee----------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcE
Q 006126          343 NKQSLE----------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI  397 (660)
Q Consensus       343 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I  397 (660)
                      ++....                      ....+..+++|+..++.......  +|...|.+++|+  +++|++++ |++|
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~--gh~~~v~~l~~spdg~~l~s~s~D~~v  348 (611)
T 1nr0_A          271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY--GHNKAITALSSSADGKTLFSADAEGHI  348 (611)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc--CCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence            654321                      22344567899988887655433  799999999999  88999999 9999


Q ss_pred             EEEECCCCeEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee---------------------------
Q 006126          398 SIFSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---------------------------  449 (660)
Q Consensus       398 ~iwd~~~~~~~~~~-~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~---------------------------  449 (660)
                      ++||+.+++....+ ..|...|.+++|++++.+++++.|+.+++|++.++...                           
T Consensus       349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~  428 (611)
T 1nr0_A          349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA  428 (611)
T ss_dssp             EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred             EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence            99999999887766 57899999999998778889999999999997653211                           


Q ss_pred             --------------eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126          450 --------------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  515 (660)
Q Consensus       450 --------------~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  515 (660)
                                    ..+ .|...+.+++|+|||++|++|+.|++|++||+.++...   .+. . .+|.   ..|.+++|
T Consensus       429 ~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---~~~-~-~~h~---~~v~~v~f  499 (611)
T 1nr0_A          429 ACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---EVK-T-IVHP---AEITSVAF  499 (611)
T ss_dssp             EESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---EEE-E-EECS---SCEEEEEE
T ss_pred             EeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---eee-c-cCCC---CceEEEEE
Confidence                          111 14567899999999999999999999999999875321   122 2 4666   68999999


Q ss_pred             ecCCcEEEE-EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee-E-EEeecc
Q 006126          516 HPDQIHLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-R-CQINLT  591 (660)
Q Consensus       516 sp~~~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~-~-~~~~~~  591 (660)
                      +|||++|++ +.|++|++||+.+ ++.........|...|.+++|+|||++|++|+.|+.|++||+.++.. . ..+   
T Consensus       500 spdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---  576 (611)
T 1nr0_A          500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---  576 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---
T ss_pred             CCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---
Confidence            999999999 5899999999987 55544312223789999999999999999999999999999988652 2 222   


Q ss_pred             cccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          592 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       592 ~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                          .||....+.  +++|+| ++. |++++.|++|++|++.
T Consensus       577 ----~~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          577 ----GAHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             ----TSSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred             ----ccCcccCee--EEEEcC-CCE-EEEecCCCCEEEEecc
Confidence                255334455  999999 787 9999999999999973

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=348.42  Aligned_cols=282  Identities=17%  Similarity=0.224  Sum_probs=249.2

Q ss_pred             CCCCCeEEEEEecC----CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126          309 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       309 ~h~~~V~~~~~spd----g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      +|.+.|++++|+|+    +.+|++|+.|++|+||++......          ..|.           ..+|...|.+++|
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~----------~~~~-----------l~gh~~~v~~~~~   88 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD----------LQWS-----------LEGHQLGVVSVDI   88 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------EEEE-----------ECCCSSCEEEEEE
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------eeee-----------eccCCCCEEEEEE
Confidence            49999999999985    679999999999999998765431          1111           1279999999999


Q ss_pred             e--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126          385 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT  460 (660)
Q Consensus       385 s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~  460 (660)
                      +  +.++++++ |++|++||+.+++.+..+..+...+.+++|+|++ .|++|+.|+.|++||+++++....+..|...|.
T Consensus        89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~  168 (321)
T 3ow8_A           89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL  168 (321)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE
Confidence            9  78999999 9999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc
Q 006126          461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  539 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~  539 (660)
                      +++|+|++++|++++.||.|++||+++++.     +. ...+|.   ..|.+++|+|++++|+++ .|+.|++||+++++
T Consensus       169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~-----~~-~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          169 SIAYSPDGKYLASGAIDGIINIFDIATGKL-----LH-TLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEE-----EE-EECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcE-----EE-EEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            999999999999999999999999998643     33 345676   689999999999999995 89999999999999


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~  619 (660)
                      ....+.+  |...|.+++|+|++++|++|+.|+.|++||+.+++++..+.       +| ...++  +++|+| ++.+|+
T Consensus       240 ~~~~~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~h-~~~v~--~v~~s~-~g~~l~  306 (321)
T 3ow8_A          240 LAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-------DH-QDQVW--GVKYNG-NGSKIV  306 (321)
T ss_dssp             EEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CC-SSCEE--EEEECT-TSSEEE
T ss_pred             eeEEEcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-------CC-CCcEE--EEEECC-CCCEEE
Confidence            8888865  68999999999999999999999999999999999988876       34 44455  999999 899999


Q ss_pred             EEeCCCeEEEEeCC
Q 006126          620 LGLTNGRVHVIEPL  633 (660)
Q Consensus       620 s~s~Dg~v~iw~~~  633 (660)
                      +++.||+|+|||+.
T Consensus       307 s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          307 SVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTCCEEEEECC
T ss_pred             EEeCCCeEEEEeCC
Confidence            99999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.2e-41  Score=372.82  Aligned_cols=327  Identities=18%  Similarity=0.241  Sum_probs=278.9

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .+.|+|||++|++++.|+.|++||...    .....  +.  +|...|.+++|+|+|+++++++.|+.+++|+.......
T Consensus       226 ~~~~s~dg~~l~~~~~d~~i~~w~~~~----~~~~~--~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~  297 (577)
T 2ymu_A          226 GVAFSPDGQTIASASDDKTVKLWNRNG----QLLQT--LT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ  297 (577)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEECTTS----CEEEE--EC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCC----CEEEE--Ee--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEE
Confidence            358999999999999999999999752    33332  43  38999999999999999999999999999997543221


Q ss_pred             ee--------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC
Q 006126          347 LE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE  403 (660)
Q Consensus       347 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~  403 (660)
                      ..                    ..+.+..+++|+..+..+....   +|...|.+++|+  +.+|++++ |+.|++||. 
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-  373 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT---GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-  373 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe---CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-
Confidence            10                    2334456789998766554332   799999999999  88999999 999999995 


Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126          404 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV  482 (660)
Q Consensus       404 ~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v  482 (660)
                      +++.+..+.+|...|.+++|+|++ .|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++
T Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~  452 (577)
T 2ymu_A          374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL  452 (577)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence            578888999999999999999999 9999999999999995 57888999999999999999999999999999999999


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      ||...      ..+. ...+|.   ..|.+++|+|++++|++ +.|+.|++||. +++++..+..  |...|++++|+||
T Consensus       453 w~~~~------~~~~-~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~d  519 (577)
T 2ymu_A          453 WNRNG------QLLQ-TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD  519 (577)
T ss_dssp             EETTS------CEEE-EEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred             EECCC------CEEE-EEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC--CCCCEEEEEEcCC
Confidence            99754      2333 455677   68999999999999999 58999999996 7888888865  6899999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          562 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       562 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      |++|++++.||.|++||. +++.+..+.       || ...|.  +++|+| |+++|+|++.|++|++||
T Consensus       520 g~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h-~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNR-NGQLLQTLT-------GH-SSSVW--GVAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEETTSEEEEECT-TSCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEECcCEEEEEeC-CCCEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence            999999999999999996 577777776       55 44455  999999 899999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.8e-41  Score=348.15  Aligned_cols=280  Identities=14%  Similarity=0.180  Sum_probs=247.1

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.+.|++++|+|+|++|++|+.||+|++||..++..                     +....  .|...|.+++|+  +
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------~~~~~--~~~~~v~~~~~s~~~  109 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------VHAIP--LRSSWVMTCAYAPSG  109 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------EEEEE--CSSSCEEEEEECTTS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------ceEee--cCCccEEEEEECCCC
Confidence            3999999999999999999999999999999876653                     11111  588899999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          387 SHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      ++|++++ |+.|++|++.++    .....+.+|...|.++.|++++.+++++.|+.|++||+.+++.+..+.+|.+.|.+
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~  189 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS  189 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEE
Confidence            8999999 999999999875    45667889999999999999888899999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH  540 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~  540 (660)
                      ++|+|+++++++|+.|++|++||++++..     .. ...+|.   ..|.+++|+|++++|++ +.|+.|++||+++++.
T Consensus       190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          190 LSLAPDTRLFVSGACDASAKLWDVREGMC-----RQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCee-----EE-EEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            99999999999999999999999998543     33 455677   68999999999999999 5899999999999888


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      +..+....+...|.+++|+|+|++|++|+.||.|++||+.+++....+.       || ...+.  +++|+| ++.+|++
T Consensus       261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~s~-dg~~l~s  329 (340)
T 1got_B          261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-------GH-DNRVS--CLGVTD-DGMAVAT  329 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEE
T ss_pred             EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-------cC-CCcEE--EEEEcC-CCCEEEE
Confidence            8777544445689999999999999999999999999999999888776       44 44555  999999 8999999


Q ss_pred             EeCCCeEEEEe
Q 006126          621 GLTNGRVHVIE  631 (660)
Q Consensus       621 ~s~Dg~v~iw~  631 (660)
                      |+.||+|+|||
T Consensus       330 ~s~D~~i~iWd  340 (340)
T 1got_B          330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             EcCCccEEecC
Confidence            99999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-40  Score=344.34  Aligned_cols=290  Identities=16%  Similarity=0.201  Sum_probs=247.6

Q ss_pred             CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126          243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  321 (660)
Q Consensus       243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp  321 (660)
                      .....+.||.. |..+           .|+|||++|++|+.||+|++||..+   ......  ++.  |...|.+++|+|
T Consensus        46 ~~~~~l~gH~~~v~~~-----------~~s~d~~~l~s~s~Dg~v~iWd~~~---~~~~~~--~~~--~~~~v~~~~~s~  107 (340)
T 1got_B           46 RTRRTLRGHLAKIYAM-----------HWGTDSRLLLSASQDGKLIIWDSYT---TNKVHA--IPL--RSSWVMTCAYAP  107 (340)
T ss_dssp             CEEEEECCCSSCEEEE-----------EECTTSSEEEEEETTTEEEEEETTT---CCEEEE--EEC--SSSCEEEEEECT
T ss_pred             hhheeecCCCCceEEE-----------EECCCCCEEEEEeCCCcEEEEECCC---CCcceE--eec--CCccEEEEEECC
Confidence            34556777776 5554           9999999999999999999999875   223333  333  899999999999


Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISI  399 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~i  399 (660)
                      +|++|++|+.|+.+++|++.+.....                 ......  .+|...|.++.|+ +..+++++ |+.|++
T Consensus       108 ~~~~l~s~~~d~~v~iw~~~~~~~~~-----------------~~~~~~--~~h~~~v~~~~~~~~~~l~s~s~d~~i~~  168 (340)
T 1got_B          108 SGNYVACGGLDNICSIYNLKTREGNV-----------------RVSREL--AGHTGYLSCCRFLDDNQIVTSSGDTTCAL  168 (340)
T ss_dssp             TSSEEEEEETTCEEEEEETTTCSBSC-----------------EEEEEE--ECCSSCEEEEEEEETTEEEEEETTSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECccCCCcc-----------------eeEEEe--cCCCccEEEEEECCCCcEEEEECCCcEEE
Confidence            99999999999999999987653200                 011111  1799999999999 77888888 999999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA  478 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  478 (660)
                      ||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++++.||
T Consensus       169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence            9999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT  557 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  557 (660)
                      +|++||+++++......    ...+.   ..|.+++|+|+|+++++ +.|+.|++||+.+++.+..+.+  |...|.+++
T Consensus       249 ~v~iwd~~~~~~~~~~~----~~~~~---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~  319 (340)
T 1got_B          249 TCRLFDLRADQELMTYS----HDNII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLG  319 (340)
T ss_dssp             CEEEEETTTTEEEEEEC----CTTCC---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEE
T ss_pred             cEEEEECCCCcEEEEEc----cCCcc---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec--CCCcEEEEE
Confidence            99999999865322111    11122   47999999999999999 5899999999999998888865  789999999


Q ss_pred             EccCCCEEEEEecCCeEEEEE
Q 006126          558 YSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       558 ~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      |+|+|.+|++|+.||.|+|||
T Consensus       320 ~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-41  Score=354.52  Aligned_cols=321  Identities=13%  Similarity=0.138  Sum_probs=227.7

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .+.+++.++ .++.+.....|++..    ...       ..|...|.+++|||||++|++++.|.. ++||         
T Consensus        12 d~g~~~~~~-~~~g~~~~~~w~~p~----~~p-------~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd---------   69 (357)
T 4g56_B           12 DLGTENLYF-QSNGSSKGSAWGRPV----TAP-------ACMEVQIGAVRYRRDGALLLAASSLSS-RTWG---------   69 (357)
T ss_dssp             ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCC---------
T ss_pred             CCCccceEE-ecCCCccccccCCCC----CCc-------ccccCCEEEEEECCCCCEEEEEcCCCC-cccc---------
Confidence            444445443 344467778898752    111       138999999999999999999998532 3332         


Q ss_pred             eeccceeEEEecCCCCceeeecc--cCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEE----EEcCCCCCeEE
Q 006126          349 EENVNMESQLYQPSSKLVMTNDI--AADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATY  420 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~----~~~~~~~~v~~  420 (660)
                           ..+.+|+..++.......  ..+|...|.+++|+ ...+++++ ||+|++||+.+++...    ...+|...|++
T Consensus        70 -----~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~  144 (357)
T 4g56_B           70 -----GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT  144 (357)
T ss_dssp             -----EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred             -----CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence                 112334433332111110  01588899999999 66666777 9999999999876543    33478999999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126          421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  498 (660)
                      ++|+|++ .|++|+.|+.|++||+++++.+..+.+|...|++++|+|++. ++++++.|++|++||+++++......   
T Consensus       145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---  221 (357)
T 4g56_B          145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---  221 (357)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---
Confidence            9999999 999999999999999999999999999999999999999875 78999999999999999865432211   


Q ss_pred             eeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVK  575 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~  575 (660)
                       ...+.   ..+.+++|+|++ .++++ +.|+.|++||+++++++..+..  |...|++++|+|++ ++|++|+.|+.|+
T Consensus       222 -~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          222 -FCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             -CTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             -ecccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence             12333   579999999985 56777 4889999999999999888865  68899999999987 6899999999999


Q ss_pred             EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      |||+++++++..+        +| ...|+  +++|+|.++.+|+|||.||+|++|++.+..
T Consensus       296 iwd~~~~~~~~~~--------~H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          296 VLDADFSEVFRDL--------SH-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EECTTSCEEEEEC--------CC-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEECCCCcEeEEC--------CC-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            9999999877654        45 44455  999999779999999999999999997643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.3e-41  Score=346.78  Aligned_cols=289  Identities=14%  Similarity=0.151  Sum_probs=231.3

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC-----CceeeecccCCCCCCeEEEEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS-----KLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      |...|.+++|+|||++|++++ |+++++||..              +.+|+...     +......   .|...|.+++|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~   90 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGS--------------LWLFKDPCAAPNEGFCSAGV---QTEAGVADLTW   90 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEE--------------EEEESSGGGTTCGGGCSEEE---EESSCEEEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeece--------------eeeeccccccCCcceeeeee---ccCCCEEEEEE
Confidence            678899999999999988887 7788888732              12232111     1111111   36678999999


Q ss_pred             e-CCEEEEEe-CCcEEEEECCCCeEEEE----EcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126          385 R-GSHLFSAS-GGKISIFSLETFQTLAT----FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN  457 (660)
Q Consensus       385 s-~~~l~s~~-dg~I~iwd~~~~~~~~~----~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~  457 (660)
                      + ++.|++|+ ||+|++||+.+++....    ..+|...|++++|+|+| +|++|+.|++|++||+++++++..+.+|..
T Consensus        91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            9 88899999 99999999998875543    34899999999999999 999999999999999999999999999999


Q ss_pred             CeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-CcEEEE-EecCcEEEEe
Q 006126          458 RITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYE  534 (660)
Q Consensus       458 ~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~-~~d~~i~iwd  534 (660)
                      .|++++|+|++ .+|++++.|++|++||+++++......    ...+.   ..+.+++|+|+ +.++++ +.|+.|++||
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd  243 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----CSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD  243 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeee----cceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence            99999999987 478999999999999999865432211    12233   46899999995 566777 4899999999


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      +++++++.++..  |...|++++|+|++ ++|++|+.|+.|+|||+.++++... .       || ...|+  +++|+|+
T Consensus       244 ~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~-------~H-~~~V~--~v~~sp~  310 (344)
T 4gqb_B          244 TKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-Q-------AH-RDFVR--DATWSPL  310 (344)
T ss_dssp             SCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-C-------CC-SSCEE--EEEECSS
T ss_pred             CCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-c-------CC-CCCEE--EEEEeCC
Confidence            999999988875  68999999999998 5899999999999999999986542 2       55 44455  9999994


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCc
Q 006126          614 EPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       614 d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      +..+|++||.||+|++|++.+..
T Consensus       311 ~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          311 NHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             STTEEEEEETTSCEEEEECCC--
T ss_pred             CCeEEEEEcCCCeEEEEECCCCC
Confidence            44578899999999999997653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4e-40  Score=334.83  Aligned_cols=281  Identities=17%  Similarity=0.270  Sum_probs=240.7

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.+.|.+++|+|+|++|++++.||.|++||+.++..                     +....  +|..+|.+++|+  ++
T Consensus        12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~~   68 (304)
T 2ynn_A           12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------VRSIQ--VTETPVRAGKFIARKN   68 (304)
T ss_dssp             ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEEEGGGT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------eEEee--ccCCcEEEEEEeCCCC
Confidence            899999999999999999999999999999876643                     11111  688999999999  88


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEE
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~  464 (660)
                      +|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++++ .....+.+|...|.+++|
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence            999999 9999999999999999999999999999999999 9999999999999999887 455778899999999999


Q ss_pred             eC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEE-EecCcEEEEeCCCCce
Q 006126          465 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNH  540 (660)
Q Consensus       465 sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~-~~d~~i~iwd~~~~~~  540 (660)
                      +| ++..|++|+.|++|++||++++..     ......+|.   ..+..+.|+|  ++.+|++ +.|++|++||++++++
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~  220 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCT---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCc---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence            99 678999999999999999987432     222334554   5788999987  7788988 5899999999999999


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEE
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIA  619 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~  619 (660)
                      +.++.+  |...|.+++|+|++++|++|+.||.|++||+.++++...+..+        ...++  +++|+|+++. +++
T Consensus       221 ~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~a  288 (304)
T 2ynn_A          221 VATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSW--CIATHPTGRKNYIA  288 (304)
T ss_dssp             EEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--------SSSEE--EEEECTTCGGGCEE
T ss_pred             ceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--------CccEE--EEEECCCCCceEEE
Confidence            998875  6899999999999999999999999999999999998888632        34455  9999994333 577


Q ss_pred             EEeCCCeEEEEeCCC
Q 006126          620 LGLTNGRVHVIEPLE  634 (660)
Q Consensus       620 s~s~Dg~v~iw~~~~  634 (660)
                      +|++| .+.+|++..
T Consensus       289 sg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          289 SGFDN-GFTVLSLGN  302 (304)
T ss_dssp             EEETT-EEEEEECC-
T ss_pred             EecCC-ceEEEEecc
Confidence            77655 578888765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-40  Score=336.72  Aligned_cols=286  Identities=18%  Similarity=0.179  Sum_probs=245.6

Q ss_pred             cccccCCCC-CCceeecCCCCceeeEecCC----CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126          245 LDASSGDDS-NDSSCFNDNNQSRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY  319 (660)
Q Consensus       245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spd----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~  319 (660)
                      ++...+|.. |.++           .|+|+    +++|++|+.|++|++|++..   ........+.  +|...|.+++|
T Consensus        25 ~~~~~~H~~~V~~v-----------~~~~~~~~~~~~l~tgs~D~~v~vW~~~~---~~~~~~~~l~--gh~~~v~~~~~   88 (321)
T 3ow8_A           25 FKQEQAHDDAIWSV-----------AWGTNKKENSETVVTGSLDDLVKVWKWRD---ERLDLQWSLE--GHQLGVVSVDI   88 (321)
T ss_dssp             EEETTSSSSCEEEE-----------EEC-------CEEEEEETTSCEEEEEEET---TEEEEEEEEC--CCSSCEEEEEE
T ss_pred             eeecccCCCcEEEE-----------EEecCCCCCCCEEEEEcCCCCEEEEECCC---CCeeeeeeec--cCCCCEEEEEE
Confidence            344456665 5554           77764    67999999999999999974   1222233454  49999999999


Q ss_pred             ecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCc
Q 006126          320 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK  396 (660)
Q Consensus       320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~  396 (660)
                      +|++.++++++.|++|++||+.+++..                     ....  .|...+.+++|+  +++|++++ ||.
T Consensus        89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~---------------------~~~~--~~~~~~~~~~~spdg~~l~~g~~dg~  145 (321)
T 3ow8_A           89 SHTLPIAASSSLDAHIRLWDLENGKQI---------------------KSID--AGPVDAWTLAFSPDSQYLATGTHVGK  145 (321)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEE--CCTTCCCCEEECTTSSEEEEECTTSE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCEE---------------------EEEe--CCCccEEEEEECCCCCEEEEEcCCCc
Confidence            999999999999999999998776541                     1111  577788899999  88999999 999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126          397 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       397 I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      |++||+.+++....+..+...|.+++|+|++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++
T Consensus       146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s  225 (321)
T 3ow8_A          146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS  225 (321)
T ss_dssp             EEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred             EEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT  554 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  554 (660)
                      .|++|++||++++..     .. ...+|.   ..|.+++|+|++++|++ +.|++|++||+.+++++.++..  |...|.
T Consensus       226 ~dg~i~iwd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h~~~v~  294 (321)
T 3ow8_A          226 DDGYIKIYDVQHANL-----AG-TLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVW  294 (321)
T ss_dssp             TTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEE
T ss_pred             CCCeEEEEECCCcce-----eE-EEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--CCCcEE
Confidence            999999999998543     23 456777   68999999999999999 5899999999999999988865  689999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEECC
Q 006126          555 YATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      +++|+|+|++|++++.||.|+|||..
T Consensus       295 ~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          295 GVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999999999964

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-40  Score=341.74  Aligned_cols=295  Identities=15%  Similarity=0.166  Sum_probs=238.1

Q ss_pred             CCC-CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGG-RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~-~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      |.. .|++++|+|+|++||+|+.|++|+||++.++....                    ......+|...|.+++|+  +
T Consensus        14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~sp~g   73 (345)
T 3fm0_A           14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------KSVLSEGHQRTVRKVAWSPCG   73 (345)
T ss_dssp             STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------EEEECSSCSSCEEEEEECTTS
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------eeeeccccCCcEEEEEECCCC
Confidence            777 99999999999999999999999999987654210                    011112799999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCe
Q 006126          387 SHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRI  459 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v  459 (660)
                      ++|++++ |++|++||+.++  +++..+.+|...|.+++|+|++ +|++|+.|+.|++||+.++.   ++..+.+|...|
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence            8999999 999999999876  4677889999999999999999 99999999999999998763   456778899999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL  538 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~  538 (660)
                      .+++|+|++++|++++.|++|++||.+++...   ... ...+|.   ..|.+++|+|+|++|++ +.|++|++||....
T Consensus       154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~-~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          154 KHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCA-TLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEE-EecCCC---CceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence            99999999999999999999999999875422   222 456777   79999999999999999 59999999996322


Q ss_pred             ---------------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee----EEEeecccccCCCCc
Q 006126          539 ---------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----RCQINLTAYAQPGTI  599 (660)
Q Consensus       539 ---------------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~----~~~~~~~~~~~~gh~  599 (660)
                                     +++.++.+ .|...|.+++|+|++..|++++.|+.|++|+...+..    ...+..  ....+| 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~h-  302 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA--HLHQAH-  302 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE--EETTSS-
T ss_pred             CCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe--eecccc-
Confidence                           22333433 3688999999999999999999999999999876531    111111  112255 


Q ss_pred             CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ...|+  +++|+|+++.+||+|+.||+|++|++.+++.
T Consensus       303 ~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          303 SQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             SSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             cCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            44455  9999994336999999999999999988765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-40  Score=350.46  Aligned_cols=380  Identities=18%  Similarity=0.263  Sum_probs=248.3

Q ss_pred             cccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc--HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHH
Q 006126           60 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQ  137 (660)
Q Consensus        60 ~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~--~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~  137 (660)
                      +...+++|++|+|+|||+|+||.+++.+|++|+++.++  ...+...++++.|+.++++-+.+..++             
T Consensus         3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~-------------   69 (410)
T 1vyh_C            3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELE-------------   69 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHH-------------
Confidence            45678999999999999999999999999999998875  556677788889988877543330000             


Q ss_pred             HHHHHHHhhhccCCCCchhhhhchhhhhhhhhccCcccccccCCCccchhHHHHHHhhhcceeeeeeeecCCCCCccccc
Q 006126          138 RQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETIS  217 (660)
Q Consensus       138 ~q~~lell~~~e~~p~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s  217 (660)
                       .+.-+.                               .+.+.. ..|. +..   .+...|        .+.       
T Consensus        70 -~~~~~~-------------------------------~~~~~~-~~~~-~~~---~~~~~~--------~~~-------   97 (410)
T 1vyh_C           70 -SKLNEA-------------------------------KEEFTS-GGPL-GQK---RDPKEW--------IPR-------   97 (410)
T ss_dssp             -----------------------------------------------------------CCC--------CCC-------
T ss_pred             -HHHHHH-------------------------------HHHHhc-cCCc-ccc---CCcccc--------ccC-------
Confidence             000000                               000000 0000 000   000000        000       


Q ss_pred             ccCccccchhhhccccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCC
Q 006126          218 LKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINE  296 (660)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~  296 (660)
                                              ......+.||.. |.++           .|+|+++++++|+.||+|++||+.+   
T Consensus        98 ------------------------~~~~~~l~gh~~~V~~~-----------~~~p~~~~l~s~s~Dg~i~vwd~~~---  139 (410)
T 1vyh_C           98 ------------------------PPEKYALSGHRSPVTRV-----------IFHPVFSVMVSASEDATIKVWDYET---  139 (410)
T ss_dssp             ------------------------SSCSCEEECCSSCEEEE-----------EECSSSSEEEEEESSSCEEEEETTT---
T ss_pred             ------------------------CCceEeecccCCcEEEE-----------EEcCCCCEEEEEeCCCeEEEEECCC---
Confidence                                    111223456655 4444           8999999999999999999999985   


Q ss_pred             CcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC
Q 006126          297 PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK  376 (660)
Q Consensus       297 ~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  376 (660)
                       +.+.. .+.  +|.+.|.+++|+|+|++|++|+.||+|++||+.+...                     +..+  .+|.
T Consensus       140 -~~~~~-~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~---------------------~~~~--~~h~  192 (410)
T 1vyh_C          140 -GDFER-TLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC---------------------IRTM--HGHD  192 (410)
T ss_dssp             -CCCCE-EEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---------------------EECC--CCCS
T ss_pred             -CcEEE-EEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------------eEEE--cCCC
Confidence             33332 243  3999999999999999999999999999999866543                     2211  1799


Q ss_pred             CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      ..|.+++|+  +++|++|+ |++|++||+.++.++.++.+|...|.++.++|++ .|++|+.|+.|++||+.++++...+
T Consensus       193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  272 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence            999999999  88999999 9999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             eccCCCeEEEEEeCC--------------------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE
Q 006126          453 KGHQNRITCLAYSLS--------------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH  512 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~--------------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  512 (660)
                      .+|...|.+++|+|+                    |.+|++|+.|++|++||++++..     +. ...+|.   ..|.+
T Consensus       273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-----~~-~~~~h~---~~v~~  343 (410)
T 1vyh_C          273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-----LM-TLVGHD---NWVRG  343 (410)
T ss_dssp             CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-----EE-EEECCS---SCEEE
T ss_pred             cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce-----EE-EEECCC---CcEEE
Confidence            999999999999996                    67899999999999999998643     33 455777   68999


Q ss_pred             EEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          513 IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       513 ~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      ++|+|+|++|++ +.|+.|++||+.+++++..+..  |...|++++|+|++.+|++|+.||.|+||+++
T Consensus       344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999 5899999999999999888865  68899999999999999999999999999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.6e-40  Score=340.22  Aligned_cols=280  Identities=14%  Similarity=0.188  Sum_probs=243.9

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.+.|++++|+|++++|++|+.||+|++||..+.....                     ...  .|...|.+++|+  +
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---------------------~~~--~~~~~v~~~~~sp~g  118 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---------------------AVT--MPCTWVMACAYAPSG  118 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---------------------EEE--CSSSCCCEEEECTTS
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---------------------EEe--cCCCCEEEEEECCCC
Confidence            399999999999999999999999999999976654311                     111  477889999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126          387 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  458 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~  458 (660)
                      .+|++++ |+.+++|++...      .....+..|...|.+++|+|++ .|++++.|++|++||+++++.+..+.+|...
T Consensus       119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD  198 (354)
T ss_dssp             SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence            9999999 999999998643      3455677899999999999999 9999999999999999999999999999999


Q ss_pred             eEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 006126          459 ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA  535 (660)
Q Consensus       459 v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~  535 (660)
                      |.++.|+|  ++++|++|+.||+|++||+++++.     +. ...+|.   ..|.+++|+|++.++++ +.|++|++||+
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~  269 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-----VQ-AFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDL  269 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-----EE-EecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            99999987  578999999999999999998643     33 355677   68999999999999999 58999999999


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP  615 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~  615 (660)
                      ++++.+..+....+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.       || ...+.  +++|+| ++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-------~h-~~~v~--~l~~sp-dg  338 (354)
T 2pbi_B          270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-------GH-ENRVS--TLRVSP-DG  338 (354)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-------CC-SSCEE--EEEECT-TS
T ss_pred             CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-------CC-CCcEE--EEEECC-CC
Confidence            998887777654445689999999999999999999999999999998887765       44 44455  999999 89


Q ss_pred             CEEEEEeCCCeEEEEe
Q 006126          616 NRIALGLTNGRVHVIE  631 (660)
Q Consensus       616 ~~l~s~s~Dg~v~iw~  631 (660)
                      .+|++|+.||+|+||+
T Consensus       339 ~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          339 TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEcCCCCEEecC
Confidence            9999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9e-40  Score=334.62  Aligned_cols=292  Identities=16%  Similarity=0.182  Sum_probs=244.2

Q ss_pred             CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      +|.+.|.+++|+|++ ++|++|+.|++|++|++......                .+..+..+.  +|...|.+++|+  
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~--~h~~~v~~~~~s~d   76 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFK--GHSHIVQDCTLTAD   76 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEE--CCSSCEEEEEECTT
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEe--CCcccEEEEEECCC
Confidence            499999999999965 89999999999999998643220                011111111  799999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      +.+|++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++ ++++..+.+|...|.++.
T Consensus        77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEE
Confidence            88999999 9999999999999999999999999999999999 99999999999999986 567888899999999999


Q ss_pred             EeCC------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC
Q 006126          464 YSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP  536 (660)
Q Consensus       464 ~sp~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~  536 (660)
                      |+|.      +..+++++.|+.|++||+++++.     .. ...+|.   ..|.+++|+|+|++|++ +.|+.|++||+.
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-----EA-DFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETTTTEE-----EE-EECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECCcchh-----he-eecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            9985      45899999999999999998542     22 355777   79999999999999999 589999999999


Q ss_pred             CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      +++.+..+..   ...|.+++|+|++.++++++.+ .+++|++..+.....+.........  .....+.+++|+| ||+
T Consensus       227 ~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp-dg~  299 (319)
T 3frx_A          227 AKKAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSA-DGQ  299 (319)
T ss_dssp             TTEEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG--GGCCCEEEEEECT-TSS
T ss_pred             CCcEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc--CcCcceeEEEECC-CCC
Confidence            9999888854   5689999999999999988754 5999999998877766532111001  1112345999999 899


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q 006126          617 RIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~  635 (660)
                      +|++|+.||+|+||++.++
T Consensus       300 ~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          300 TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEETTSCEEEEEEEEC
T ss_pred             EEEEeecCceEEEEEEeec
Confidence            9999999999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-39  Score=337.05  Aligned_cols=291  Identities=14%  Similarity=0.123  Sum_probs=244.0

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      ....+.||.. |.++           .|+||+++|++|+.||+|++||...   ......+.  .  |...|.+++|+|+
T Consensus        56 ~~~~l~gH~~~V~~~-----------~~s~d~~~l~s~s~Dg~v~vWd~~~---~~~~~~~~--~--~~~~v~~~~~sp~  117 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCM-----------DWCKDKRRIVSSSQDGKVIVWDSFT---TNKEHAVT--M--PCTWVMACAYAPS  117 (354)
T ss_dssp             EEEEEECCSSCEEEE-----------EECTTSSEEEEEETTSEEEEEETTT---CCEEEEEE--C--SSSCCCEEEECTT
T ss_pred             EEEEecCCCCeEEEE-----------EECCCCCEEEEEeCCCeEEEEECCC---CCcceEEe--c--CCCCEEEEEECCC
Confidence            4456777876 5555           9999999999999999999999874   22223322  2  7889999999999


Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI  399 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~i  399 (660)
                      |.++++++.|+.+++|++.......               ........  .+|...|.+++|+  +..|++++ |++|++
T Consensus       118 g~~lasg~~d~~i~v~~~~~~~~~~---------------~~~~~~~~--~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l  180 (354)
T 2pbi_B          118 GCAIACGGLDNKCSVYPLTFDKNEN---------------MAAKKKSV--AMHTNYLSACSFTNSDMQILTASGDGTCAL  180 (354)
T ss_dssp             SSEEEEESTTSEEEEEECCCCTTCC---------------SGGGCEEE--EECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             CCEEEEeeCCCCEEEEEEecccccc---------------ccccceee--eccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence            9999999999999999976442100               00011111  1599999999999  77999999 999999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC
Q 006126          400 FSLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA  476 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  476 (660)
                      ||+.+++++..+.+|...|.+++|+|  ++ .|++|+.|+.|++||+++++++..+.+|...|++++|+|++.+|++++.
T Consensus       181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence            99999999999999999999999987  46 9999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 006126          477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITY  555 (660)
Q Consensus       477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  555 (660)
                      |++|++||++++.......    ...+.   ..+.+++|+|+|+++++ +.|+.|++||+.+++.+..+.+  |...|++
T Consensus       261 D~~v~lwd~~~~~~~~~~~----~~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~--h~~~v~~  331 (354)
T 2pbi_B          261 DATCRLYDLRADREVAIYS----KESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG--HENRVST  331 (354)
T ss_dssp             TSCEEEEETTTTEEEEEEC----CTTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC--CSSCEEE
T ss_pred             CCeEEEEECCCCcEEEEEc----CCCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC--CCCcEEE
Confidence            9999999999854321110    11122   46889999999999999 4899999999999998888764  7899999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEE
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      ++|+|||++|++|+.||.|+||+
T Consensus       332 l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          332 LRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-38  Score=352.08  Aligned_cols=345  Identities=18%  Similarity=0.233  Sum_probs=285.1

Q ss_pred             CCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126          241 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY  319 (660)
Q Consensus       241 ~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~  319 (660)
                      ++..++.+.||.. |..+           .|+|||++||+++.|++|+|||..+    .....  +.  +|...|.+++|
T Consensus        46 ~~~~~~~l~gh~~~V~~l-----------~fspdg~~las~~~d~~i~vWd~~~----~~~~~--~~--~~~~~v~~~~~  106 (577)
T 2ymu_A           46 NGQLLQTLTGHSSSVWGV-----------AFSPDGQTIASASDDKTVKLWNRNG----QLLQT--LT--GHSSSVRGVAF  106 (577)
T ss_dssp             TSCEEEEEECCSSCEEEE-----------EECTTSSEEEEEETTSCEEEEETTS----CEEEE--EC--CCSSCEEEEEE
T ss_pred             CCCEEEEEeCCCCCEEEE-----------EECCCCCEEEEEeCCCEEEEEECCC----CEEEE--EE--CCCCCEEEEEE
Confidence            4667777888876 5554           9999999999999999999999752    33333  43  38999999999


Q ss_pred             ecCCCEEEEEECCCcEEEEeccCCceeee---------------------------------------------------
Q 006126          320 SHSGDFLVALTQTATHKLWKWQSNKQSLE---------------------------------------------------  348 (660)
Q Consensus       320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~---------------------------------------------------  348 (660)
                      +|+|++|++++.|+.+++|+.........                                                   
T Consensus       107 s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (577)
T 2ymu_A          107 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV  186 (577)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEE
T ss_pred             CCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeee
Confidence            99999999999999999999643321100                                                   


Q ss_pred             ----------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC
Q 006126          349 ----------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP  415 (660)
Q Consensus       349 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~  415 (660)
                                ..+.+..+++|+... ..+....  +|...|.+++|+  +.+|++++ |+.|++||. +++.+..+.+|.
T Consensus       187 ~~~~~~~~l~~~~~d~~v~~w~~~~-~~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~  262 (577)
T 2ymu_A          187 AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS  262 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTTS-CEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS
T ss_pred             eecCCCCEEEEEcCCCEEEEEeCCC-cEEEEEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC
Confidence                      122234567888543 4433332  799999999999  78999999 999999996 477888999999


Q ss_pred             CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126          416 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~  494 (660)
                      ..|.+++|+|++ .+++++.|+.|++||. +++.+..+.+|...|.+++|+|+++.+++++.|+.|++||+...      
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~------  335 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------  335 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC------
Confidence            999999999999 9999999999999996 46788889999999999999999999999999999999998763      


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH  573 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~  573 (660)
                      .+. ...+|.   ..+.+++|+|+++++++ +.|+.|++||. +++.+..+..  |...|.+++|+|||++|++++.|+.
T Consensus       336 ~~~-~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~  408 (577)
T 2ymu_A          336 HLQ-TLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKT  408 (577)
T ss_dssp             EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             eeE-EEeCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC--CCCCeEEEEECCCCCEEEEEeCCCE
Confidence            233 345666   68999999999999999 58899999996 6777777764  6889999999999999999999999


Q ss_pred             EEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          574 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       574 I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      |++||. +++.+..+.       +| ...+.  +++|+| |+.+|++++.|++|++|+...
T Consensus       409 v~~~~~-~~~~~~~~~-------~~-~~~v~--~~~~s~-d~~~l~~~~~d~~v~~w~~~~  457 (577)
T 2ymu_A          409 VKLWNR-NGQLLQTLT-------GH-SSSVW--GVAFSP-DDQTIASASDDKTVKLWNRNG  457 (577)
T ss_dssp             EEEECT-TCCEEEEEE-------CC-SSCEE--EEEECT-TSSEEEEEETTSEEEEEETTS
T ss_pred             EEEEeC-CCCEEEEec-------CC-CCCeE--EEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence            999996 466666665       33 44455  999999 899999999999999999754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-40  Score=347.20  Aligned_cols=305  Identities=13%  Similarity=0.103  Sum_probs=247.7

Q ss_pred             CCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe
Q 006126          242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS  320 (660)
Q Consensus       242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s  320 (660)
                      ....+.+.||.. |.++           .|+|+|++|++|+.||+|+|||..+    +.... .+..  |...|.+++|+
T Consensus        56 ~~~~~~l~gH~~~V~~~-----------~~sp~~~~l~s~s~D~~v~iWd~~~----~~~~~-~~~~--h~~~v~~~~~s  117 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSL-----------DWTPEKNWIVSASQDGRLIVWNALT----SQKTH-AIKL--HCPWVMECAFA  117 (380)
T ss_dssp             CEEEEEECCCSSCEEEE-----------EECTTSSCEEEEETTSEEEEEETTT----TEEEE-EEEC--CCTTCCCCEEC
T ss_pred             eEEeecccccccEEEEE-----------EEcCCCCEEEEEeCCCeEEEEECCC----Cccce-EEec--CCCCEEEEEEC
Confidence            345567788877 5555           9999999999999999999999974    33222 2333  89999999999


Q ss_pred             cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCc
Q 006126          321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGK  396 (660)
Q Consensus       321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~  396 (660)
                      |+|++|++|+.|+.+++|++.......              .......  ...+|...|.++.|.   +..|++|+ |++
T Consensus       118 ~~g~~las~~~d~~v~iw~~~~~~~~~--------------~~~~~~~--~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~  181 (380)
T 3iz6_a          118 PNGQSVACGGLDSACSIFNLSSQADRD--------------GNMPVSR--VLTGHKGYASSCQYVPDQETRLITGSGDQT  181 (380)
T ss_dssp             TTSSEEEECCSSSCCEEEECCCCSSCC--------------CSSTTCC--BCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred             CCCCEEEEeeCCCcEEEEECCCCcccc--------------CCcccee--eccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence            999999999999999999986543200              0000111  112799999999998   45799999 999


Q ss_pred             EEEEECCCCeEEEEE-----cCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCC-CCceeeEeeccCCCeEEEEEeCCC
Q 006126          397 ISIFSLETFQTLATF-----ANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSL  468 (660)
Q Consensus       397 I~iwd~~~~~~~~~~-----~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~  468 (660)
                      |++||+.+++.+..+     .+|...|.+++|++ ++ .|++|+.|+.|++||++ .++.+..+.+|.+.|++++|+|++
T Consensus       182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~  261 (380)
T 3iz6_a          182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG  261 (380)
T ss_dssp             EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred             EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence            999999999998887     57889999999987 66 99999999999999998 457788999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecC
Q 006126          469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~  546 (660)
                      ++|++++.||+|++||++++........... ...+.   ..|.+++|+|+|++++++ .||.|++||+.+++.+..+..
T Consensus       262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~  338 (380)
T 3iz6_a          262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL---PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT  338 (380)
T ss_dssp             SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS---CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc---CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence            9999999999999999999764432211100 01111   358999999999999995 899999999999888766632


Q ss_pred             --CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          547 --DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       547 --~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                        ..|...|.+++|+|+|++|++|+.||.|+||++...+
T Consensus       339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence              3478999999999999999999999999999998654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.3e-39  Score=330.40  Aligned_cols=290  Identities=16%  Similarity=0.228  Sum_probs=241.4

Q ss_pred             ccccCCCC-CCceeecCCCCceeeEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126          246 DASSGDDS-NDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG  323 (660)
Q Consensus       246 ~~~~g~~~-v~~~~~~~~~~~~~~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg  323 (660)
                      ..+.||.. |.++           .|+|++ ++|++|+.|++|++|++.+...........+.  +|...|.+++|+|+|
T Consensus        11 ~~l~gH~~~V~~l-----------~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~dg   77 (319)
T 3frx_A           11 GTLEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLTADG   77 (319)
T ss_dssp             EEECCCSSCEEEE-----------EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEECTTS
T ss_pred             EEEccccceEEEE-----------EccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEECCCC
Confidence            34667776 5554           889865 89999999999999998742111111122343  499999999999999


Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF  400 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw  400 (660)
                      ++|++|+.|++|++||+.+++.                     +..+.  +|...|.+++|+  +.+|++++ |++|++|
T Consensus        78 ~~l~s~s~D~~v~~wd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           78 AYALSASWDKTLRLWDVATGET---------------------YQRFV--GHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             SEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCe---------------------eEEEc--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999876653                     11111  799999999999  88999999 9999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCC------C-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQ------D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  473 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~------~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  473 (660)
                      |+. ++++..+.+|...|.++.|+|.      + .+++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++
T Consensus       135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS  213 (319)
T ss_dssp             ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred             ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE
Confidence            996 5678888999999999999984      4 7999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC------
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD------  547 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~------  547 (660)
                      ++.||+|++||+++++..     . ....+    ..|.+++|+|++.+++++.++.+++|++..+..+..+...      
T Consensus       214 ~~~dg~i~iwd~~~~~~~-----~-~~~~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~  283 (319)
T 3frx_A          214 AGKDGEIMLWNLAAKKAM-----Y-TLSAQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK  283 (319)
T ss_dssp             EETTCEEEEEETTTTEEE-----E-EEECC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCG
T ss_pred             EeCCCeEEEEECCCCcEE-----E-EecCC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcccccccc
Confidence            999999999999986533     2 22233    4799999999999999987888999999887766665432      


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      .+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            23567999999999999999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-39  Score=341.72  Aligned_cols=320  Identities=17%  Similarity=0.188  Sum_probs=263.4

Q ss_pred             eEecCCCC-EEEEEeCCCcEEEEec----cCcCCCc---ceeeeecCCC------CCCCCeEEEEEecCCCEEEEEECCC
Q 006126          268 STSLPDAD-SAVCAKSLEKSVNLKL----QLINEPS---ECRTLLLPDN------SFGGRVVRLIYSHSGDFLVALTQTA  333 (660)
Q Consensus       268 ~~~spdg~-~l~s~~~dg~i~iwd~----~~~~~~~---~~~~~~l~~~------~h~~~V~~~~~spdg~~l~s~s~dg  333 (660)
                      +.|+|+|+ +|++++.||.|++|++    .++...-   ....+..+..      +|.+.|.+++|+|+|++|++++.||
T Consensus        51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  130 (425)
T 1r5m_A           51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENG  130 (425)
T ss_dssp             EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTS
T ss_pred             EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCC
Confidence            49999999 9999999999999999    6422000   1122111111      2577999999999999999999999


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT  410 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~  410 (660)
                      .|++|+.... .                     +....  +|...|.+++|+  +.+|++++ |+.|++||+.+++.+..
T Consensus       131 ~i~i~~~~~~-~---------------------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          131 ELRLWNKTGA-L---------------------LNVLN--FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             CEEEEETTSC-E---------------------EEEEC--CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             eEEEEeCCCC-e---------------------eeecc--CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            9999983222 1                     11111  689999999999  88999999 99999999999999999


Q ss_pred             EcCCCCC---------------eEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126          411 FANPPPI---------------ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       411 ~~~~~~~---------------v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      +..+...               +.+++|+|++.+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence            9877776               8999999988888999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT  554 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  554 (660)
                      .|+.|++||+++++.     +. ...+|.   ..|.+++|+|++ ++++ +.|+.|++||+++++.+..+..  |...|.
T Consensus       267 ~d~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~  334 (425)
T 1r5m_A          267 DDGTLRIWHGGNGNS-----QN-CFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIF  334 (425)
T ss_dssp             TTSCEEEECSSSBSC-----SE-EECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEE
T ss_pred             CCCEEEEEECCCCcc-----ce-EecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEE
Confidence            999999999998532     23 344565   689999999999 7776 6899999999999998888865  588999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEECCCCe--------------------eEEEeecccccCCCCcCc-ccceEEEEEecC
Q 006126          555 YATYSCDGKCIYVSCKSGHVKVFDTSTLE--------------------LRCQINLTAYAQPGTISL-ELYPLVIAAHPL  613 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--------------------~~~~~~~~~~~~~gh~~~-~v~~~~v~~sp~  613 (660)
                      +++|+|++++|++++.||.|++||+.+++                    .+..+.       +|... .+.  +++|+| 
T Consensus       335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~--~~~~s~-  404 (425)
T 1r5m_A          335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-------SSQDNDYIF--DLSWNC-  404 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-------CTTCCCCEE--EEEECT-
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-------CcccCCceE--EEEccC-
Confidence            99999999999999999999999999887                    566655       33222 444  999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCC
Q 006126          614 EPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       614 d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ++.+|++++.||.|++|++.
T Consensus       405 ~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          405 AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TSSEEEEEESSSCCEEEECC
T ss_pred             CCceEEEEecCceEEEEeec
Confidence            89999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-38  Score=324.68  Aligned_cols=283  Identities=19%  Similarity=0.248  Sum_probs=243.9

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|...|.+++|+|+|++|++++.||.|++|+..+++.                     ....  .+|...|.+++|+  +
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------~~~~--~~h~~~v~~~~~~~~~   77 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------EKTI--SGHKLGISDVAWSSDS   77 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------EEEE--CCCSSCEEEEEECTTS
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------chhh--ccCCCceEEEEEcCCC
Confidence            4999999999999999999999999999998766543                     1111  1699999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      ++|++++ |+.|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|+.|++||+++++.+..+..|...|.++.|
T Consensus        78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A           78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            8999999 9999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~  543 (660)
                      +|+++++++++.||.|++||+++++..     ......+.   ..+..++|+|+++++++ +.|+.|++||+++++.+..
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  229 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQCL-----KTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT  229 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEE-----EEECCSSC---CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcee-----eEEeccCC---CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            999999999999999999999985432     22333444   57999999999999999 5899999999999999888


Q ss_pred             ecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          544 LVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      +..+..........++ +++.+|++|+.||.|++||+.+++.+..+.       || ...+.  +++|+| ++.++++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~l~s~~  298 (312)
T 4ery_A          230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-------GH-TDVVI--STACHP-TENIIASAA  298 (312)
T ss_dssp             ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECS-SSSEEEEEE
T ss_pred             EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-------cc-CCcEE--EEeecC-cCCceEEEE
Confidence            8664322222333444 788999999999999999999999888876       44 44444  999999 899999997


Q ss_pred             --CCCeEEEEeCC
Q 006126          623 --TNGRVHVIEPL  633 (660)
Q Consensus       623 --~Dg~v~iw~~~  633 (660)
                        .|++|++|+..
T Consensus       299 ~~~d~~i~~W~~d  311 (312)
T 4ery_A          299 LENDKTIKLWKSD  311 (312)
T ss_dssp             CTTTCCEEEEECC
T ss_pred             ccCCccEEEecCC
Confidence              69999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.1e-39  Score=328.66  Aligned_cols=314  Identities=14%  Similarity=0.167  Sum_probs=261.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|||++++++..++.+..|+...     ........  +|...|.+++|+|++++|++++ ||.|++|++.+.....
T Consensus        15 ~~~s~dg~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A           15 FHVTADGQMQPVPFPPDALIGPGIPR-----HARQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEECSSSCEEECCCCTTSSSSTTCCS-----EEEEEEEE--CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             EEECCCCCEEEeecCCCcEeccccCC-----ccccceec--cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            49999999999998888777775542     22222222  3899999999999999999998 9999999987664311


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFI  422 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~  422 (660)
                                        .+......+|...|.+++|+  +++|++++ ||.|++||+.+++  ....+..|...+.+++
T Consensus        87 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  148 (337)
T 1gxr_A           87 ------------------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA  148 (337)
T ss_dssp             ------------------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred             ------------------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence                              00000111588999999999  88999999 9999999999887  5667788999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      |+|++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++.....       
T Consensus       149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------  221 (337)
T 1gxr_A          149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------  221 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-------
Confidence            99999 9999999999999999999999999999999999999999999999999999999999986543221       


Q ss_pred             ccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          502 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       502 ~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      .+.   ..+.+++|+|+++++++ +.++.|++||+++++.. .+.  .|...|.+++|+|++++|++++.||.|++||+.
T Consensus       222 ~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          222 DFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             ECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            233   58999999999999999 47899999999887754 332  468999999999999999999999999999999


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      +++......        | ...+.  +++|+| ++++|++++.||.|++|++
T Consensus       296 ~~~~~~~~~--------~-~~~v~--~~~~s~-~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          296 YGASIFQSK--------E-SSSVL--SCDISV-DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEec--------C-CCcEE--EEEECC-CCCEEEEecCCCeEEEEEE
Confidence            998775542        1 33344  999999 8999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-39  Score=342.88  Aligned_cols=290  Identities=14%  Similarity=0.215  Sum_probs=245.0

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.+.|++++|+|+|++|++|+.||+|+|||..++...                     ....  +|...|.+++|+  +
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---------------------~~~~--~h~~~v~~~~~s~~g  120 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT---------------------HAIK--LHCPWVMECAFAPNG  120 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE---------------------EEEE--CCCTTCCCCEECTTS
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------------------eEEe--cCCCCEEEEEECCCC
Confidence            49999999999999999999999999999998766531                     1111  688999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCCe-------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe----
Q 006126          387 SHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL----  452 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~-------~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~----  452 (660)
                      ++|++|+ |+.|++||+.+..       ....+.+|...|.++.|+|++  .|++|+.|++|++||+.+++.+..+    
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence            8999999 9999999987532       345577899999999999986  8999999999999999999988877    


Q ss_pred             -eccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc
Q 006126          453 -KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ  529 (660)
Q Consensus       453 -~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~  529 (660)
                       .+|...|.++.|++ ++.++++|+.|++|++||++...    ..+. ...+|.   +.|.+++|+|++++|++ +.|++
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVR-TYHGHE---GDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCE-EECCCS---SCCCEEEECTTSSEEEEECSSSC
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceE-EECCcC---CCeEEEEEecCCCeEEEEcCCCe
Confidence             67999999999987 88999999999999999998522    2333 456787   79999999999999999 49999


Q ss_pred             EEEEeCCCCceeeeecCCC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126          530 IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                      |++||+++++.+..+....     +...|++++|+|+|++|++|+.||.|++||+.+++....+..   ...+| ...|.
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~h-~~~v~  348 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT---LQNSH-EGRIS  348 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC---SCSSC-CCCCC
T ss_pred             EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec---ccCCC-CCceE
Confidence            9999999999887775421     123589999999999999999999999999999987776532   11244 44555


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                        +++|+| ++.+|++|+.||+|+||++...+
T Consensus       349 --~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          349 --CLGLSS-DGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             --EEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred             --EEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence              999999 89999999999999999997653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=329.23  Aligned_cols=293  Identities=13%  Similarity=0.127  Sum_probs=231.3

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .++|+|||++||+|+.|++|+|||..+    ...........+|...|.+++|+|+|++|++|+.|+++++|+.......
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~----~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~   96 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEG----DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE   96 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEET----TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCC----CcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE
Confidence            359999999999999999999999974    3222111112359999999999999999999999999999997655321


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC---eEEEEEcCCCCCeEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATY  420 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~---~~~~~~~~~~~~v~~  420 (660)
                                         .+..+  .+|...|.+++|+  +++|++++ |+.|++||+.++   .++..+.+|...|.+
T Consensus        97 -------------------~~~~~--~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  155 (345)
T 3fm0_A           97 -------------------CVTTL--EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH  155 (345)
T ss_dssp             -------------------EEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred             -------------------EEEEc--cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence                               11111  1799999999999  88999999 999999999875   456678899999999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEeCCCCc--eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee------
Q 006126          421 FILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL------  491 (660)
Q Consensus       421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~------  491 (660)
                      ++|+|++ +|++|+.|+.|++||.++++  +...+.+|...|++++|+|+|++|++++.|++|++||.......      
T Consensus       156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence            9999999 99999999999999998775  45778899999999999999999999999999999997432110      


Q ss_pred             ----eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce----eee---ecCCCCCCCeEEEEEc
Q 006126          492 ----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH----TSQ---LVPDKMDLPITYATYS  559 (660)
Q Consensus       492 ----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~----~~~---~~~~~~~~~v~~~~~s  559 (660)
                          ....+.+....|.   ..|.+++|+|++..+++ +.|+.|++|+...+..    ...   .....|...|++++|+
T Consensus       236 ~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  312 (345)
T 3fm0_A          236 GSDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN  312 (345)
T ss_dssp             ---CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred             ccCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence                0112222222355   68999999999999998 6999999999875431    111   1112478999999999


Q ss_pred             cCC-CEEEEEecCCeEEEEECCCCeeEEE
Q 006126          560 CDG-KCIYVSCKSGHVKVFDTSTLELRCQ  587 (660)
Q Consensus       560 ~dg-~~l~sg~~dg~I~iwd~~~~~~~~~  587 (660)
                      |++ .+|++|+.||.|++|++.+++....
T Consensus       313 p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          313 PKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             SSSTTEEEEEETTSCEEEEEECC------
T ss_pred             CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            998 5999999999999999998875543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-40  Score=348.26  Aligned_cols=331  Identities=11%  Similarity=0.061  Sum_probs=263.9

Q ss_pred             eEecCCCC-EEEEE----------eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 006126          268 STSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  336 (660)
Q Consensus       268 ~~~spdg~-~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~  336 (660)
                      +.|+|+|+ +++++          +.|+.|++||+...........     ..|...|.+++|+|++++|++++.||.|+
T Consensus        18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-----LQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-----CCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-----EecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            38999997 99999          8899999999985221111111     23889999999999999999999999999


Q ss_pred             EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe------
Q 006126          337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ------  406 (660)
Q Consensus       337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~------  406 (660)
                      +|++.....                 ....+....  +|...|.+++|+   +.+|++++ ||.|++||+.+++      
T Consensus        93 vw~~~~~~~-----------------~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           93 LYSTNEANN-----------------AINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             EECCSSTTS-----------------CCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             Eeecccccc-----------------cccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence            999876211                 001111111  699999999999   57899999 9999999999876      


Q ss_pred             EEEE---EcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceeeEeecc------CCCeEEEEEeCCC-CEEEEE
Q 006126          407 TLAT---FANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------QNRITCLAYSLSL-NVLVSS  474 (660)
Q Consensus       407 ~~~~---~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~-~~l~s~  474 (660)
                      ....   +..|...|.+++|+|+ + .|++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .+++++
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence            3332   3578899999999999 5 9999999999999999999999888776      7899999999997 689999


Q ss_pred             eCCC---cEEEEEcCCCeeeeceeeeeeee-ccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCceeeeecCCC
Q 006126          475 GADA---QLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK  548 (660)
Q Consensus       475 s~dg---~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~  548 (660)
                      +.|+   .|++||++++.    ..+. ... +|.   ..|.+++|+| ++.+|++ +.|+.|++||+++++.+..+..  
T Consensus       234 ~~d~~~~~i~~~d~~~~~----~~~~-~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--  303 (416)
T 2pm9_A          234 TGSDNDPSILIWDLRNAN----TPLQ-TLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--  303 (416)
T ss_dssp             ECCSSSCCCCEEETTSTT----SCSB-CCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--
T ss_pred             ECCCCCceEEEEeCCCCC----CCcE-EeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--
Confidence            9998   99999999842    2333 344 666   6899999999 8999998 5899999999999999888865  


Q ss_pred             CCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeec---------ccccCCCC------------------cC
Q 006126          549 MDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL---------TAYAQPGT------------------IS  600 (660)
Q Consensus       549 ~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~---------~~~~~~gh------------------~~  600 (660)
                      |...|.+++|+|++ .+|++++.||.|++||+.++........         ..+...+.                  +.
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG  383 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence            68899999999999 8999999999999999987654322110         00000000                  13


Q ss_pred             cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ..+.  +++|+| +|++|++++.||+|+||++.+.
T Consensus       384 ~~~~--~~~~s~-dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          384 EPSP--AAHWAF-GGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCSC--CCEEET-TTEEECBCTTSSCBCCBCCCCC
T ss_pred             CCcc--ceEEee-CCeEEEEeCCCCeEEEEEeccC
Confidence            3333  899999 8999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=326.74  Aligned_cols=279  Identities=15%  Similarity=0.100  Sum_probs=224.3

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccC--------cCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEe
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQL--------INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK  339 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~  339 (660)
                      +.|+|||++|++++ |+++++||...        ......+...    ..|...|.+++|+|++ .|++|+.||+|+|||
T Consensus        36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd  109 (344)
T 4gqb_B           36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG----VQTEAGVADLTWVGER-GILVASDSGAVELWE  109 (344)
T ss_dssp             EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE----EEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred             EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee----eccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence            49999999999887 77888887421        0000111110    1157789999999986 588999999999999


Q ss_pred             ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC
Q 006126          340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP  416 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~  416 (660)
                      +.+++....                  .. ....+|...|++++|+  +++|++|+ |++|++||+.+++++..+.+|..
T Consensus       110 ~~~~~~~~~------------------~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B          110 LDENETLIV------------------SK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             ECTTSSCEE------------------EE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             ccCCCceeE------------------ee-ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            887654111                  00 0111799999999999  88999999 99999999999999999999999


Q ss_pred             CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeee
Q 006126          417 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL  491 (660)
Q Consensus       417 ~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~  491 (660)
                      .|.+++|+|++  .|++|+.|++|++||+++++....+.  .|...+.+++|+| ++++|++|+.||+|++||+++++  
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--  248 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--  248 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--
Confidence            99999999998  78999999999999999999888774  3566799999999 46788999999999999999854  


Q ss_pred             eceeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEEEE
Q 006126          492 CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVS  568 (660)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg  568 (660)
                         .+. .+.+|.   ..|++++|+|++ ++|++ +.|++|++||+.+++++. +.  .|...|++++|+|+++ +|++|
T Consensus       249 ---~~~-~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~  318 (344)
T 4gqb_B          249 ---CVL-SSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTV  318 (344)
T ss_dssp             ---CCE-EEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEE
T ss_pred             ---EEE-EEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEE
Confidence               333 456777   699999999998 46777 589999999999887654 33  4799999999999986 57799


Q ss_pred             ecCCeEEEEECCCCe
Q 006126          569 CKSGHVKVFDTSTLE  583 (660)
Q Consensus       569 ~~dg~I~iwd~~~~~  583 (660)
                      +.||.|++|++.+..
T Consensus       319 s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          319 GWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ETTSCEEEEECCC--
T ss_pred             cCCCeEEEEECCCCC
Confidence            999999999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.7e-38  Score=324.24  Aligned_cols=292  Identities=16%  Similarity=0.187  Sum_probs=232.7

Q ss_pred             CCCCCeEEEEE-----ec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE
Q 006126          309 SFGGRVVRLIY-----SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF  382 (660)
Q Consensus       309 ~h~~~V~~~~~-----sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  382 (660)
                      +|.+.|++++|     ++ ++++|++|+.|++|++|++.......              ..+.....+  .+|...|.++
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------~~~~~~~~l--~~h~~~V~~~   82 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------YFGIPHKAL--TGHNHFVSDL   82 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--------------BSEEEEEEE--CCCSSCEEEE
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--------------ccccccchh--ccCCCceEEE
Confidence            49999999999     77 99999999999999999987543200              011111111  2799999999


Q ss_pred             EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee---cc
Q 006126          383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GH  455 (660)
Q Consensus       383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~---~~  455 (660)
                      +|+  +.++++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+.. .......   +|
T Consensus        83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~  161 (343)
T 2xzm_R           83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENH  161 (343)
T ss_dssp             EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCC
Confidence            999  88999999 9999999999999999999999999999999999 999999999999999984 3333333   68


Q ss_pred             CCCeEEEEEeCCC----------CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126          456 QNRITCLAYSLSL----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-  524 (660)
Q Consensus       456 ~~~v~~l~~sp~~----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-  524 (660)
                      ...|.++.|+|++          .++++++.|+.|++||...      .... ...+|.   ..|.+++|+|+|++|++ 
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~~h~---~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRY-TFKAHE---SNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEE-EEECCS---SCEEEEEECTTSSEEEEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeE-EEcCcc---ccceEEEECCCCCEEEEE
Confidence            8999999999987          7899999999999999543      2222 455777   68999999999999999 


Q ss_pred             EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE--Eeecccc----cCCC
Q 006126          525 IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAY----AQPG  597 (660)
Q Consensus       525 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~~----~~~g  597 (660)
                      +.|+.|++||+.+ ......+.   +...|.+++|+|++.++++| .|+.|++||+.+++...  .+.....    ...|
T Consensus       232 s~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          232 GKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             ETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred             cCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence            5899999999954 44444442   35679999999999988755 57889999998876544  3321110    1123


Q ss_pred             CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      | ...  +.+++|+| ++++|++|+.||+|++|++.++
T Consensus       308 ~-~~~--v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          308 K-NPQ--CTSLAWNA-LGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             S-CCC--EEEEEECS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred             C-CCc--eEEEEECC-CCCeEEEecCCceEEEEEEEcc
Confidence            3 333  44999999 8999999999999999998765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-38  Score=322.71  Aligned_cols=290  Identities=16%  Similarity=0.130  Sum_probs=224.2

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.++|++++|+|+  +|++|+.|++|++|++..+...                   ........+|...|.+++|+  +
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~   70 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-------------------LIDVLDETAHKKAIRSVAWRPHT   70 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-------------------EEEEECTTCCCSCEEEEEECTTS
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-------------------EEEEEecCCccCCEEEEEECCCC
Confidence            39999999999998  9999999999999998764320                   11111011499999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC----CceeeEee
Q 006126          387 SHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLK  453 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~-------~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~----~~~~~~~~  453 (660)
                      .+|++++ |++|++||+..       .+....+.+|...|.+++|+|++ +|++|+.|++|++||++.    .+++..+.
T Consensus        71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~  150 (330)
T 2hes_X           71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ  150 (330)
T ss_dssp             SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred             CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence            8999999 99999999853       45677888999999999999999 999999999999999943    25677888


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEE-EecCcE
Q 006126          454 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQI  530 (660)
Q Consensus       454 ~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~-~~d~~i  530 (660)
                      +|...|.+++|+|++.+|++++.|++|++||..++..   ..+. ...+|.   ..|.+++|+|+  +.+|++ +.|++|
T Consensus       151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~-~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVA-VLNGHE---GTVWSSDFDKTEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEE-EccCCC---CcEEEEEecCCCCeeEEEEEeCCCeE
Confidence            9999999999999999999999999999999877431   2333 456787   79999999998  678888 589999


Q ss_pred             EEEeCCCC--------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcc
Q 006126          531 DVYEAPTL--------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE  602 (660)
Q Consensus       531 ~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~  602 (660)
                      ++||+..+        .+...+.. .|...|.+++|++++ +|++++.||.|+|||..+++.......    ..+|....
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~h~~~~  297 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR----ALCHGVYE  297 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE----SCTTTTSC
T ss_pred             EEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc----ccccccce
Confidence            99998754        23333332 378899999999765 899999999999999988742211110    11443324


Q ss_pred             cceEEEEEecC-CCCEEEEEeCCCeEEEEeCCC
Q 006126          603 LYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       603 v~~~~v~~sp~-d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ++  +++|+|. ++.+||+|+.||+|+||++..
T Consensus       298 v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          298 IN--VVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            55  9999994 478999999999999999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-38  Score=330.73  Aligned_cols=281  Identities=11%  Similarity=0.054  Sum_probs=224.6

Q ss_pred             eEecCCCCEEEEEeC------CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc
Q 006126          268 STSLPDADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ  341 (660)
Q Consensus       268 ~~~spdg~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~  341 (660)
                      +.|||||++||+|+.      |+.+++|+...+......... .  .+|...|.+++|+|++. +++++.||+|+|||+.
T Consensus        48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~--~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~  123 (357)
T 4g56_B           48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-G--VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEIL  123 (357)
T ss_dssp             EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-E--EECSSCEEEEEEETTTE-EEEEETTSCEEEC---
T ss_pred             EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-c--CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecc
Confidence            499999999999997      678999988653222222111 1  23889999999999986 5678889999999987


Q ss_pred             CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe
Q 006126          342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA  418 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v  418 (660)
                      +++....                   ......+|...|++++|+  +++|++++ |+.|++||+.+++++..+.+|...|
T Consensus       124 ~~~~~~~-------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          124 EKESLLV-------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             -----CC-------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ccceeEE-------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            6643110                   000111699999999999  88999999 9999999999999999999999999


Q ss_pred             EEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126          419 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCS  493 (660)
Q Consensus       419 ~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~  493 (660)
                      ++++|+|++  .+++++.|+.|++||+++++....+.  .|...+.+++|+|+ +.+|++|+.|+.|++||+++++    
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~----  260 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD----  260 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----
Confidence            999999988  89999999999999999988776554  46778999999997 5689999999999999999854    


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc-CCCEEEEEec
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCK  570 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~  570 (660)
                       .+. ...+|.   ..|.+++|+|++ ++|++ +.|++|+|||+++++++..+   .|...|++++|+| |+++|++|+.
T Consensus       261 -~~~-~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~  332 (357)
T 4g56_B          261 -SAQ-TSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGW  332 (357)
T ss_dssp             -GCE-EECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEET
T ss_pred             -EeE-EEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcC
Confidence             333 455676   689999999987 46777 58999999999999887665   4799999999998 8999999999


Q ss_pred             CCeEEEEECCCCe
Q 006126          571 SGHVKVFDTSTLE  583 (660)
Q Consensus       571 dg~I~iwd~~~~~  583 (660)
                      ||.|++|++.+..
T Consensus       333 Dg~v~iW~~~~~~  345 (357)
T 4g56_B          333 DHKVLHHHLPSEG  345 (357)
T ss_dssp             TSCEEEEECC---
T ss_pred             CCeEEEEECCCCC
Confidence            9999999997643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-37  Score=316.92  Aligned_cols=272  Identities=14%  Similarity=0.177  Sum_probs=229.4

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|||++|++++.||+|++||+.+   ......  +..  |..+|.+++|+|++++|++|+.|++|++||+.+++.  
T Consensus        19 ~~fsp~~~~l~s~~~dg~v~lWd~~~---~~~~~~--~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~--   89 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSGRVELWNYET---QVEVRS--IQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--   89 (304)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTT---TEEEEE--EEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCC---CceeEE--eec--cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE--
Confidence            39999999999999999999999984   222333  333  899999999999999999999999999999876654  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL  423 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~  423 (660)
                                         +..+.  +|...|.+++|+  +.+|++|+ |++|++||+.++ .....+.+|...|.+++|
T Consensus        90 -------------------~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           90 -------------------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred             -------------------EEEEe--CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence                               11111  799999999999  88999999 999999999887 556778899999999999


Q ss_pred             cC-CC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126          424 LP-QD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       424 sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  498 (660)
                      +| ++ .|++|+.|++|++||+.++.....+. +|...+..+.|+|  ++.+|++++.|++|++||+++++     .+. 
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~-  222 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA-  222 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-----EEE-
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-----cce-
Confidence            99 45 99999999999999998887666554 4668899999987  77899999999999999999854     333 


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC--EEEEEecCCeEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVK  575 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~sg~~dg~I~  575 (660)
                      ...+|.   ..|.+++|+|++.+|++ +.|++|++||+.+++.+.++..  |...+.+++|+|++.  ++++|+.|| +.
T Consensus       223 ~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~asg~~~g-~~  296 (304)
T 2ynn_A          223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNG-FT  296 (304)
T ss_dssp             EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--SSSSEEEEEECTTCGGGCEEEEETTE-EE
T ss_pred             eeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC--CCccEEEEEECCCCCceEEEEecCCc-eE
Confidence            456787   68999999999999999 5899999999999999988865  578899999999875  577776555 77


Q ss_pred             EEECCC
Q 006126          576 VFDTST  581 (660)
Q Consensus       576 iwd~~~  581 (660)
                      +|++..
T Consensus       297 ~~~~~~  302 (304)
T 2ynn_A          297 VLSLGN  302 (304)
T ss_dssp             EEECC-
T ss_pred             EEEecc
Confidence            888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-37  Score=328.46  Aligned_cols=304  Identities=13%  Similarity=0.132  Sum_probs=238.7

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.+.|.+++|+|||++|++|+ ++.+++|++.++...........  ...++.   .........+...|.+++|+  ++
T Consensus        63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~--~~~~~~---~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA--ANKDPE---NLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEECTTSS
T ss_pred             CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc--cccccc---cccccccCCCceeEEEEEECCCCC
Confidence            899999999999999999876 78999999987765322000000  000000   00000001244569999999  88


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                      +|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++++++...+. +...+.+++|+
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~  215 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS  215 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence            999999 9999999999999999999999999999999999 99999999999999999998887776 56789999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEEcCCCeeeeceeee-eeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc---
Q 006126          466 L-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---  539 (660)
Q Consensus       466 p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~---  539 (660)
                      | +++++++++.|+.|++||++++......... ....+|.   ..|.+++|+|+|++|++ +.|+.|++||+++..   
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~  292 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS  292 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence            9 8999999999999999999986543322111 0124666   68999999999999999 589999999997632   


Q ss_pred             ---------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126          540 ---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA  610 (660)
Q Consensus       540 ---------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~  610 (660)
                               +...+.  .|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+.       || ...+.  +++|
T Consensus       293 ~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-------~h-~~~v~--~v~~  360 (393)
T 1erj_A          293 DSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-------GH-RNSVI--SVAV  360 (393)
T ss_dssp             --------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEE
T ss_pred             cccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-------CC-CCCEE--EEEe
Confidence                     333443  368899999999999999999999999999999999888776       44 44455  8888


Q ss_pred             ecC-----CCCEEEEEeCCCeEEEEeCCCC
Q 006126          611 HPL-----EPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       611 sp~-----d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      +|.     ++++||+|+.||+|+||++...
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            752     5789999999999999998643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.6e-37  Score=321.34  Aligned_cols=293  Identities=15%  Similarity=0.181  Sum_probs=233.6

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEe-----cC-CCCEEEEEeCCCcEEEEeccCcCCCcc--eeeeecCCCCCCCCe
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTS-----LP-DADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRV  314 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~-----sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~l~~~~h~~~V  314 (660)
                      ....+.||.. |.++           .|     ++ |+++|++|+.|++|++||+........  .....+.  +|...|
T Consensus        13 ~~~~l~gH~~~V~~~-----------~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V   79 (343)
T 2xzm_R           13 KRGILEGHSDWVTSI-----------VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFV   79 (343)
T ss_dssp             EEEEEECCSSCEEEE-----------EECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCE
T ss_pred             eeeeeccchhhhhhe-----------eeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCce
Confidence            3456777776 5554           55     55 999999999999999999974321111  1122243  499999


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE
Q 006126          315 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA  392 (660)
Q Consensus       315 ~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~  392 (660)
                      .+++|+|++.++++++.|++|++||+.++..                     +..+.  +|...|.+++|+  +++|+++
T Consensus        80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------~~~~~--~h~~~v~~v~~sp~~~~l~s~  136 (343)
T 2xzm_R           80 SDLALSQENCFAISSSWDKTLRLWDLRTGTT---------------------YKRFV--GHQSEVYSVAFSPDNRQILSA  136 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSEEEEEETTSSCE---------------------EEEEE--CCCSCEEEEEECSSTTEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcE---------------------EEEEc--CCCCcEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999876643                     11111  799999999999  8899999


Q ss_pred             e-CCcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCC-----------eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126          393 S-GGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQN  457 (660)
Q Consensus       393 ~-dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~-----------~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~  457 (660)
                      + |+.|++||+.. .......   .|...|.+++|+|++           .|++++.|+.|++|| ..++....+.+|..
T Consensus       137 ~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~  214 (343)
T 2xzm_R          137 GAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES  214 (343)
T ss_dssp             ETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS
T ss_pred             cCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc
Confidence            9 99999999984 3333333   688899999999874           699999999999999 45677788899999


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC
Q 006126          458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT  537 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~  537 (660)
                      .|.+++|+|+|++|++|+.||.|++||+....    .... .. .+.   ..|.+++|+|++.+++++.|+.|++||+.+
T Consensus       215 ~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~----~~~~-~~-~~~---~~v~~v~~sp~~~~la~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          215 NVNHLSISPNGKYIATGGKDKKLLIWDILNLT----YPQR-EF-DAG---STINQIAFNPKLQWVAVGTDQGVKIFNLMT  285 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEESSCCS----SCSE-EE-ECS---SCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred             cceEEEECCCCCEEEEEcCCCeEEEEECCCCc----ccce-ee-cCC---CcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            99999999999999999999999999995422    1222 11 122   469999999999999888999999999987


Q ss_pred             Cceee--eecC---------CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          538 LNHTS--QLVP---------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       538 ~~~~~--~~~~---------~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      ++...  .+..         ..|...|.+++|+|+|++|++|+.||.|++|++.++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            76544  3321         1367889999999999999999999999999987653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.9e-37  Score=317.22  Aligned_cols=292  Identities=16%  Similarity=0.197  Sum_probs=241.0

Q ss_pred             ccccCCCC-CCceeecCCCCceeeEecCC-CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126          246 DASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG  323 (660)
Q Consensus       246 ~~~~g~~~-v~~~~~~~~~~~~~~~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg  323 (660)
                      ..++||.. |.++           +|+|+ +++|++|+.||+|+|||+.............+.  +|...|.+++|+|+|
T Consensus        32 ~tL~GH~~~V~~v-----------~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg   98 (340)
T 4aow_A           32 GTLKGHNGWVTQI-----------ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDG   98 (340)
T ss_dssp             EEECCCSSCEEEE-----------EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECTTS
T ss_pred             EEECCccCCEEEE-----------EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECCCC
Confidence            35788887 6665           89998 689999999999999999853322222233354  489999999999999


Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF  400 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw  400 (660)
                      ++|++++.|+.|++|+.........                     ..  .+...+..+.++  +.+|++++ |+.+++|
T Consensus        99 ~~l~s~~~d~~i~~~~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~  155 (340)
T 4aow_A           99 QFALSGSWDGTLRLWDLTTGTTTRR---------------------FV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLW  155 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEE---------------------EE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEcccccceEEeecccceeee---------------------ec--CCCCceeEEEEeecCccceeecCCCeEEEE
Confidence            9999999999999999876654111                     01  466677788888  88899999 9999999


Q ss_pred             ECCCCeEEE-EEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC
Q 006126          401 SLETFQTLA-TFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA  476 (660)
Q Consensus       401 d~~~~~~~~-~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  476 (660)
                      |+....... ...+|...+.+++|++++   .+++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.
T Consensus       156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence            998765443 345889999999999876   7889999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-------CCC
Q 006126          477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-------DKM  549 (660)
Q Consensus       477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~  549 (660)
                      |+.|++||+++++..     . ...++    ..+.+++|+|++.+++++.|+.|++||++++..+..+..       ..|
T Consensus       236 Dg~i~iwd~~~~~~~-----~-~~~~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h  305 (340)
T 4aow_A          236 DGQAMLWDLNEGKHL-----Y-TLDGG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE  305 (340)
T ss_dssp             TCEEEEEETTTTEEE-----E-EEECS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred             CCeEEEEEeccCcee-----e-eecCC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence            999999999985433     3 22333    479999999999888888999999999998877666543       246


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      ...|++++|+|||++|++|+.||.|+|||+.+|+
T Consensus       306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            8899999999999999999999999999999885

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-37  Score=318.37  Aligned_cols=301  Identities=12%  Similarity=0.100  Sum_probs=224.5

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      .+..+.+|.. |.++           .|+|+  +|++|+.|++|++||+....  ..... .+...+|...|.+++|+|+
T Consensus         6 ~~~~~~~h~~~v~~~-----------~~s~~--~las~~~D~~i~lw~~~~~~--~~~~~-~~~~~~h~~~v~~v~~sp~   69 (330)
T 2hes_X            6 LIKSLKLYKEKIWSF-----------DFSQG--ILATGSTDRKIKLVSVKYDD--FTLID-VLDETAHKKAIRSVAWRPH   69 (330)
T ss_dssp             EEEEEECCSSCEEEE-----------EEETT--EEEEEESSSCEEEEECSSSC--CEEEE-EECTTCCCSCEEEEEECTT
T ss_pred             cceeeccCCCceeee-----------ccCCC--EEEEEcCCCEEEEEEecCCC--eEEEE-EEecCCccCCEEEEEECCC
Confidence            3455667766 4444           78887  99999999999999997411  12222 2322238999999999999


Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI  399 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~i  399 (660)
                      |++|++++.|++|++|++.....              .......+..+  .+|...|.+++|+  +++|++|+ |++|++
T Consensus        70 ~~~las~s~D~~v~iw~~~~~~~--------------~~~~~~~~~~~--~~h~~~V~~v~~sp~g~~las~s~D~~v~i  133 (330)
T 2hes_X           70 TSLLAAGSFDSTVSIWAKEESAD--------------RTFEMDLLAII--EGHENEVKGVAWSNDGYYLATCSRDKSVWI  133 (330)
T ss_dssp             SSEEEEEETTSCEEEEEC---------------------CCCEEEEEE--C----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCEEEEEeCCCcEEEEEcccCcC--------------ccccceeEEEE--cCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence            99999999999999999854321              00011122211  2799999999999  88999999 999999


Q ss_pred             EECCC----CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC--ceeeEeeccCCCeEEEEEeCC--CCE
Q 006126          400 FSLET----FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LNV  470 (660)
Q Consensus       400 wd~~~----~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~--~~~  470 (660)
                      ||+..    .+++..+.+|...|.+++|+|++ .|++|+.|++|++||..++  +++..+.+|...|.+++|+|+  +.+
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence            99943    35678889999999999999999 9999999999999998776  678889999999999999998  778


Q ss_pred             EEEEeCCCcEEEEEcCCCeeee---ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc--eeeee
Q 006126          471 LVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQL  544 (660)
Q Consensus       471 l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~  544 (660)
                      |++++.|++|++||++++....   ......+...|.   ..|.+++|++++ +|++ +.|+.|++||..++.  .....
T Consensus       214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~  289 (330)
T 2hes_X          214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR  289 (330)
T ss_dssp             EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence            9999999999999997632100   012221222366   689999999877 5555 799999999998774  23232


Q ss_pred             cCCCCCC-CeEEEEEcc--CCCEEEEEecCCeEEEEECCC
Q 006126          545 VPDKMDL-PITYATYSC--DGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       545 ~~~~~~~-~v~~~~~s~--dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      . ..|.. .|.+++|+|  ++++|++|+.||.|+|||+++
T Consensus       290 ~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          290 A-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             S-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             c-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            2 23565 899999999  789999999999999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-36  Score=340.16  Aligned_cols=341  Identities=11%  Similarity=0.103  Sum_probs=276.8

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCC-cceeeeecCCCCCCCC-eEEEEEec--CCCEEEEEECCCcEEEEeccCC
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGR-VVRLIYSH--SGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~-V~~~~~sp--dg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      +.|+|||++|++++ ++.|++||+.++..+ .....  +.  +|... |.+++|+|  +|++|++++.||.|++|++.++
T Consensus        24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--~~--~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~   98 (615)
T 1pgu_A           24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ--FT--GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   98 (615)
T ss_dssp             CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE--EC--TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             EEECCCCCEEEEec-CCeEEEEECCCCCCccccceE--Ee--cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence            39999999999998 889999999852111 23333  43  38999 99999999  9999999999999999999644


Q ss_pred             --------ceeee--e-------------------eccc----eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC-
Q 006126          344 --------KQSLE--E-------------------ENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-  387 (660)
Q Consensus       344 --------~~~~~--~-------------------~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~-  387 (660)
                              .....  .                   ...+    ..+.+|+  .+..+....  +|...|.+++|+  +. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~  174 (615)
T 1pgu_A           99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS--GHSQRINACHLKQSRPM  174 (615)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC--SCSSCEEEEEECSSSSC
T ss_pred             cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee--cCCccEEEEEECCCCCc
Confidence                    11110  0                   0111    4566777  334443332  799999999999  54 


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCC---CeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceeeEe-e---ccCC
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPP---IATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKL-K---GHQN  457 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~---~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~~~-~---~~~~  457 (660)
                      .+++++ |+.|++||+.+++.+..+..|..   .|.+++|+|+ + .|++++.|+.|++||+.+++.+..+ .   +|..
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  254 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  254 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence            799999 99999999999999999999999   9999999999 8 9999999999999999999999998 6   8999


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee----------------------------------------
Q 006126          458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH----------------------------------------  497 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------------------------------------  497 (660)
                      .|.++.|+ +++++++++.|+.|++||+++++........                                        
T Consensus       255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  333 (615)
T 1pgu_A          255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK  333 (615)
T ss_dssp             CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred             ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence            99999999 9999999999999999999865432110000                                        


Q ss_pred             --------------------------------------------------------------------------------
Q 006126          498 --------------------------------------------------------------------------------  497 (660)
Q Consensus       498 --------------------------------------------------------------------------------  497 (660)
                                                                                                      
T Consensus       334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~  413 (615)
T 1pgu_A          334 TISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS  413 (615)
T ss_dssp             EECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred             EEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------eeeeccCCCCCC
Q 006126          498 --------------------------------------------------------------------SFQTGLVPETTI  509 (660)
Q Consensus       498 --------------------------------------------------------------------~~~~~~~~~~~~  509 (660)
                                                                                          ....+|.   ..
T Consensus       414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---~~  490 (615)
T 1pgu_A          414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR---AK  490 (615)
T ss_dssp             ECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS---SC
T ss_pred             EcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCcc---Cc
Confidence                                                                                0011222   57


Q ss_pred             eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc----------CCCEEEEEecCCeEEEEE
Q 006126          510 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----------DGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       510 v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~----------dg~~l~sg~~dg~I~iwd  578 (660)
                      |.+++|+|++++|++ +.|+.|++||+.+++.+..+.. .|...|++++|+|          ++++|++|+.||.|++||
T Consensus       491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~  569 (615)
T 1pgu_A          491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  569 (615)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence            899999999999999 5899999999999999887754 2689999999999          999999999999999999


Q ss_pred             CCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          579 TSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       579 ~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +.++ +.+..+.       +| ...+.  +++|+| ++. |++++.||+|++|++..
T Consensus       570 ~~~~~~~~~~~~-------~h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          570 VKRPMKIIKALN-------AH-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SSCTTCCEEETT-------SS-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred             CCCCceechhhh-------cC-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence            9997 6666654       44 44455  999999 788 99999999999999865

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.6e-38  Score=333.91  Aligned_cols=322  Identities=10%  Similarity=0.029  Sum_probs=254.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+|++|++++.||.+++||...    ...... +..  | ..+....|+|+|++|++++.||.|++|++.++..  
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~----~~~~~~-~~~--~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--  131 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTII----RDGSKM-LKR--A-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ--  131 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCS----EETTTT-SCS--C-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE--
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecc----cceeeE-Eec--C-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce--
Confidence            38999999999999999999999974    222211 211  3 4455567899999999999999999998765543  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                         ....  .+|...|.+++|+  +++|++++ |+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       132 -------------------~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          132 -------------------REID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             -------------------EEET--TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             -------------------eeec--ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence                               1111  1699999999999  88999999 9999999999999999999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeec---cCCCeEEE---------------------EEeCCCCEEEEEeCCCc
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCL---------------------AYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~---~~~~v~~l---------------------~~sp~~~~l~s~s~dg~  479 (660)
                      |++ .|++++.|+.|++||+++++.+..+..   |...|.++                     +|+|+++++++++.||.
T Consensus       191 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  270 (420)
T 3vl1_A          191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV  270 (420)
T ss_dssp             TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC
T ss_pred             CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe
Confidence            999 999999999999999999999888875   34445554                     45788999999999999


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc-EEEE-EecCcEEEEeCCCCce-eeeecCCCCCCCeEEE
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYA  556 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~  556 (660)
                      |++||+++++.     +.....+|.   ..|.+++|+|++. ++++ +.||.|++||+++++. +..+.. .|...|.++
T Consensus       271 i~i~d~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~  341 (420)
T 3vl1_A          271 ITVHNVFSKEQ-----TIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-NEGTPINNV  341 (420)
T ss_dssp             EEEEETTTCCE-----EEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-STTSCEEEE
T ss_pred             EEEEECCCCce-----eEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-cCCCCceEE
Confidence            99999998543     222444566   6899999999999 8888 5889999999998754 566654 357788888


Q ss_pred             EEccCCCEEEEEecCCeEEEEECCCCeeEEEee--cccccCCCCcCcccceEEEEEecCCCC---EEEEEeCCCeEEEEe
Q 006126          557 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN--LTAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVIE  631 (660)
Q Consensus       557 ~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~~~gh~~~~v~~~~v~~sp~d~~---~l~s~s~Dg~v~iw~  631 (660)
                      .+ +++++|++++.||.|++|++........+.  .......+| ...+.  +++|+| ++.   .+++++.+|.+.+|+
T Consensus       342 ~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~~~s~-~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          342 YF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDAVS--QFCYVS-DDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCCCC--EEEEEC-CSSSSCEEEEEETTTEEEEEE
T ss_pred             Ee-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-CcceE--EEEEcc-CCCCcceEEEEcCCceEEEEe
Confidence            55 688899999999999999988742221111  000011133 34455  999999 788   778888899999999


Q ss_pred             CCC
Q 006126          632 PLE  634 (660)
Q Consensus       632 ~~~  634 (660)
                      +..
T Consensus       417 ~~~  419 (420)
T 3vl1_A          417 LSN  419 (420)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            865

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-37  Score=357.56  Aligned_cols=349  Identities=11%  Similarity=0.064  Sum_probs=254.0

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      ..+.|+| |++|++++.|++|++||+.+   ...+..+.     |...|++++|+|++++|++|+.||.|++||+.+...
T Consensus        62 ~~l~fsp-g~~L~S~s~D~~v~lWd~~~---~~~~~~~~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           62 KEMRFVK-GIYLVVINAKDTVYVLSLYS---QKVLTTVF-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             EEEEEET-TTEEEEEETTCEEEEEETTT---CSEEEEEE-----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEEcC-CCEEEEEECcCeEEEEECCC---CcEEEEEc-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            3459999 88999999999999999985   22233332     678999999999999999999999999999987653


Q ss_pred             e---------------------------------eeeeccceeEEEecCCCCceeeeccc----------------CCCC
Q 006126          346 S---------------------------------LEEENVNMESQLYQPSSKLVMTNDIA----------------ADPK  376 (660)
Q Consensus       346 ~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~h~  376 (660)
                      .                                 ......+..+ +||..++..+..+..                .+|.
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence            1                                 0123344567 999998886654321                1245


Q ss_pred             CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE--Ec---C-------------CCCCeEEEEEc----CCC--eE
Q 006126          377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFILL----PQD--LF  429 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~--~~---~-------------~~~~v~~v~~s----p~~--~l  429 (660)
                      ..|.+++|+  |.+|++++ ||.|++||+.+++++..  +.   .             +...|++++|+    |++  .+
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll  291 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL  291 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence            789999999  88999999 99999999999887654  21   1             23468899994    554  56


Q ss_pred             EEEeCC--------------------------------------------------------------------------
Q 006126          430 AFGFDD--------------------------------------------------------------------------  435 (660)
Q Consensus       430 ~s~~~d--------------------------------------------------------------------------  435 (660)
                      ++|+.|                                                                          
T Consensus       292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s  371 (902)
T 2oaj_A          292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL  371 (902)
T ss_dssp             EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred             EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence            666443                                                                          


Q ss_pred             --CeEEEEeCCCCceeeE-----------------------------------------eeccCCCeEEEEEeCCCCEEE
Q 006126          436 --SSILVHCPCTKKTKAK-----------------------------------------LKGHQNRITCLAYSLSLNVLV  472 (660)
Q Consensus       436 --~~I~iwd~~~~~~~~~-----------------------------------------~~~~~~~v~~l~~sp~~~~l~  472 (660)
                        +.|++||+.+|.....                                         +.+|...+.+++|+|++++|+
T Consensus       372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la  451 (902)
T 2oaj_A          372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI  451 (902)
T ss_dssp             TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred             CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence              3344444433321111                                         112223333445578899999


Q ss_pred             EEeCCCcEEEEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc-------
Q 006126          473 SSGADAQLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-------  539 (660)
Q Consensus       473 s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~-------  539 (660)
                      +|+.|++|++||+.++.......+..     +..+|.   ..|.+++|+|||++|++ +.|++|+|||+.+++       
T Consensus       452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~  528 (902)
T 2oaj_A          452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE---LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR  528 (902)
T ss_dssp             EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------
T ss_pred             EecCCCcEEEEECCCccccCCceEEeechhhcCCCCC---CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcccc
Confidence            99999999999999864211111110     012666   68999999999999999 599999999997652       


Q ss_pred             --------------------------------------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          540 --------------------------------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       540 --------------------------------------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                                                            ++..+.  .|...|++++||||| +||+|+.|+.|+|||+++
T Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          529 PESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             ---------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred             CCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence                                                  244443  378999999999999 999999999999999998


Q ss_pred             CeeEEEeecccccC-CCCcCcccceEEEEEe-----cCCC---CEEEEEeCCCeEEEEeC---CCCc
Q 006126          582 LELRCQINLTAYAQ-PGTISLELYPLVIAAH-----PLEP---NRIALGLTNGRVHVIEP---LESE  636 (660)
Q Consensus       582 ~~~~~~~~~~~~~~-~gh~~~~v~~~~v~~s-----p~d~---~~l~s~s~Dg~v~iw~~---~~~~  636 (660)
                      +..+......  .. .|| ...|+  +++|+     | ||   .+|++|+.||+|++||+   .+|+
T Consensus       606 ~~~~~~~~~~--~~~~gh-~~~V~--sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          606 PAIIYMENIR--EISGAQ-SACVT--CIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             TEEEEEEEGG--GTCSSC-CCCEE--EEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             CeEEEEeehh--Hhcccc-ccceE--EEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            8776432211  11 144 34444  99999     8 64   89999999999999999   5554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.1e-36  Score=311.65  Aligned_cols=296  Identities=16%  Similarity=0.198  Sum_probs=243.1

Q ss_pred             ecCCCCCCCCeEEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE
Q 006126          304 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF  382 (660)
Q Consensus       304 ~l~~~~h~~~V~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v  382 (660)
                      +|.+  |.+.|++++|+|+ +++|+|||.||+|+|||+......                .+.....+  .+|...|.++
T Consensus        33 tL~G--H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l--~~h~~~V~~~   92 (340)
T 4aow_A           33 TLKG--HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRAL--RGHSHFVSDV   92 (340)
T ss_dssp             EECC--CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEE--CCCSSCEEEE
T ss_pred             EECC--ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEE--eCCCCCEEEE
Confidence            4654  9999999999997 689999999999999998765431                11112111  2799999999


Q ss_pred             EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee-eEeeccCC
Q 006126          383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQN  457 (660)
Q Consensus       383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~-~~~~~~~~  457 (660)
                      +|+  +.+|++++ |+.|++|+............+...+..+.+++++ .|++|+.|+.+++||+...... ....+|..
T Consensus        93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~  172 (340)
T 4aow_A           93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE  172 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred             EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence            999  88999999 9999999999999998888899999999999999 9999999999999998765443 44567999


Q ss_pred             CeEEEEEeCCC--CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEe
Q 006126          458 RITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE  534 (660)
Q Consensus       458 ~v~~l~~sp~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd  534 (660)
                      .+.+++|++++  .++++++.|+.|++||+++++.     +. ...+|.   ..|.+++|+|++++|++ +.|+.|++||
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-----~~-~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd  243 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-----KT-NHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWD  243 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-----ee-EecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            99999998864  5788999999999999998543     23 455677   68999999999999999 5899999999


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc--cCCCCcCcccceEEEEEec
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~~gh~~~~v~~~~v~~sp  612 (660)
                      +++.+.+..+..   ...|.+++|+|++.++ +++.|+.|++||++++..+..+.....  ...+| ...  +++++|+|
T Consensus       244 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~--v~~l~~s~  316 (340)
T 4aow_A          244 LNEGKHLYTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQ--CTSLAWSA  316 (340)
T ss_dssp             TTTTEEEEEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CCC--EEEEEECT
T ss_pred             eccCceeeeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCC--EEEEEECC
Confidence            999999888854   6789999999988655 556799999999999988877654321  12233 333  45999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          613 LEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       613 ~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                       ++++|++|+.||+|+|||+.+|+
T Consensus       317 -dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          317 -DGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             -TSSEEEEEETTSCEEEEEEEC--
T ss_pred             -CCCEEEEEeCCCEEEEEeCCCcC
Confidence             89999999999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-37  Score=358.24  Aligned_cols=346  Identities=12%  Similarity=0.081  Sum_probs=255.6

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .++|+|||++||+|+.||+|+||+..+    .++.. .+   .|...|.+++|+| |++|++++.|++|++||+.+++..
T Consensus        22 ~lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~-~~---~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           22 AAAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVI-KL---EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEECSTT----CEEEE-EC---SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCC----cEEEE-Ec---CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence            359999999999999999999999863    33322 22   2788999999999 889999999999999999876542


Q ss_pred             ee--------------------eeccceeEEEecCCCCceeee---------cccCCCCCCeEEEEEe---CCEEEEEe-
Q 006126          347 LE--------------------EENVNMESQLYQPSSKLVMTN---------DIAADPKDSISCFALR---GSHLFSAS-  393 (660)
Q Consensus       347 ~~--------------------~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~v~~v~~s---~~~l~s~~-  393 (660)
                      ..                    ....+..+++||..++.+...         ....+|...|.+++|+   +..+++|+ 
T Consensus        93 ~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~  172 (902)
T 2oaj_A           93 TTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE  172 (902)
T ss_dssp             EEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred             EEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence            11                    234456789999988875311         1223799999999999   35788888 


Q ss_pred             CCcEEEEECCCCeEEEEEcCC------------------CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE--e
Q 006126          394 GGKISIFSLETFQTLATFANP------------------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--L  452 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~------------------~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~--~  452 (660)
                      ||.| +||+.++++++.+..|                  ...|.+++|+|+| +|++|+.|+.|++||+++++++..  +
T Consensus       173 dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l  251 (902)
T 2oaj_A          173 YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTV  251 (902)
T ss_dssp             SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred             CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence            8999 9999999999888765                  4679999999999 999999999999999999887653  2


Q ss_pred             ---ec-------------cCCCeEEEEEe----CCC-CEEEEEeCC-----CcEEEEEc---------------------
Q 006126          453 ---KG-------------HQNRITCLAYS----LSL-NVLVSSGAD-----AQLCVWDA---------------------  485 (660)
Q Consensus       453 ---~~-------------~~~~v~~l~~s----p~~-~~l~s~s~d-----g~i~vwd~---------------------  485 (660)
                         ..             |...|++++|+    |++ ..+++|+.|     ..+.+|++                     
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~  331 (902)
T 2oaj_A          252 FETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP  331 (902)
T ss_dssp             SCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred             cccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCc
Confidence               11             34579999995    433 456666554     25666652                     


Q ss_pred             --------------------------------------------------CCCeeeece-eeee----------------
Q 006126          486 --------------------------------------------------VGWKKLCSK-FLHS----------------  498 (660)
Q Consensus       486 --------------------------------------------------~~~~~~~~~-~~~~----------------  498 (660)
                                                                        .++...... ....                
T Consensus       332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~  411 (902)
T 2oaj_A          332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS  411 (902)
T ss_dssp             SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred             cceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEE
Confidence                                                              221100000 0000                


Q ss_pred             ------------------eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee--eeec-------CCCCC
Q 006126          499 ------------------FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT--SQLV-------PDKMD  550 (660)
Q Consensus       499 ------------------~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~--~~~~-------~~~~~  550 (660)
                                        ...+|.   ..+.+++|+|++++|++ +.|++|++||+.++...  ..+.       ...|.
T Consensus       412 ~~~~~w~~~~~~~~~~~~~l~G~~---~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~  488 (902)
T 2oaj_A          412 VPNKLWLGALSAAQNKDYLLKGGV---RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE  488 (902)
T ss_dssp             EEHHHHHHHHHTTBCCCCSCCCSB---CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred             cCHHHHHHHHhcccCCCCcccCCc---CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence                              011122   23444566789999999 59999999999877431  1111       11468


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEECCCCee---------------------------------------------E
Q 006126          551 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL---------------------------------------------R  585 (660)
Q Consensus       551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~---------------------------------------------~  585 (660)
                      ..|.+++|+|||++||+|+.||+|+|||+.+++.                                             +
T Consensus       489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  568 (902)
T 2oaj_A          489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS  568 (902)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred             CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence            8999999999999999999999999999987631                                             2


Q ss_pred             EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ..+       .+| ...|+  +++|+| || +||+|+.|++|+|||+.++..
T Consensus       569 ~~l-------~~h-~~~V~--svafSp-dG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          569 TAV-------HAN-KGKTS--AINNSN-IG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             EEE-------CCC-SCSEE--EEEECB-TS-EEEEEETTSEEEEEETTTTEE
T ss_pred             EEE-------EcC-CCcEE--EEEecC-Cc-EEEEEeCCCcEEEEECCCCeE
Confidence            222       244 44555  999999 89 999999999999999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.6e-36  Score=319.93  Aligned_cols=312  Identities=18%  Similarity=0.225  Sum_probs=262.8

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .++++|+++++|+.||+|++||+.+    +.... .+.  +|...|++++|+  ++++++|+.||.|++||+.+++.   
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~-~~~--~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~---  191 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVT----GKCLR-TLV--GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC---  191 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTT----CCEEE-ECC--CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE---
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCC----CcEEE-EEc--CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE---
Confidence            6778899999999999999999984    33332 244  499999999998  56999999999999999876643   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD  427 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~  427 (660)
                                        +....  +|...|.++.|+++.+++++ ||.|++||+.+++.+..+.+|...|.+++|  ++
T Consensus       192 ------------------~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          192 ------------------IHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             ------------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             ------------------EEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence                              11111  69999999999988899999 999999999999999999999999999999  67


Q ss_pred             -eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126          428 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       428 -~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                       .+++|+.|+.|++||+++++.+..+.+|...|.++.|  ++.++++++.|+.|++||+++++.     +. ...+|.  
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-----~~-~~~~~~--  319 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-----IH-TLTGHQ--  319 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCC--
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE-----EE-EEcCCc--
Confidence             9999999999999999999999999999999999999  789999999999999999998653     23 344565  


Q ss_pred             CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126          507 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL  584 (660)
Q Consensus       507 ~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~  584 (660)
                       ..+.++.++  +.++++ +.||.|++||+++++.+..+... .|...|++++|+  ++++++|+.||.|++||+.+++.
T Consensus       320 -~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          320 -SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             -SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             -ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence             577777764  668888 58999999999999998888653 268899999995  68999999999999999999998


Q ss_pred             EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe----EEEEeCCCC
Q 006126          585 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHVIEPLES  635 (660)
Q Consensus       585 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~----v~iw~~~~~  635 (660)
                      +..+....  ..+| ...++  +++|+| ++.++++|+.||+    |.|||+...
T Consensus       395 ~~~~~~~~--~~~~-~~~v~--~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          395 IRNLVTLE--SGGS-GGVVW--RIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEECT--TGGG-TCEEE--EEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             eeeeeccc--cCCC-CceEE--EEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence            88774211  0122 44455  999999 8999999999998    999999753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.3e-36  Score=304.45  Aligned_cols=275  Identities=12%  Similarity=0.119  Sum_probs=232.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+|++|++++.||.|++|+..+    +.+... +.  +|...|.+++|+|++++|++++.||.|++||+.+++.  
T Consensus        29 ~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~-~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--   99 (312)
T 4ery_A           29 VKFSPNGEWLASSSADKLIKIWGAYD----GKFEKT-IS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--   99 (312)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred             EEECCCCCEEEEeeCCCeEEEEeCCC----cccchh-hc--cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--
Confidence            39999999999999999999999974    333332 43  3899999999999999999999999999999876653  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                         +....  +|...|.+++|+  +++|++++ |+.|++||+.+++.+..+..|...|.+++|+
T Consensus       100 -------------------~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
T 4ery_A          100 -------------------LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN  158 (312)
T ss_dssp             -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             -------------------EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence                               11111  699999999999  88999999 9999999999999999999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      |++ .+++|+.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|++||+++++..     . ...+
T Consensus       159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~-~~~~  232 (312)
T 4ery_A          159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-----K-TYTG  232 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-----E-EECS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----E-EEEe
Confidence            999 99999999999999999998887764 46678999999999999999999999999999986532     2 2334


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEEC
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDT  579 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~--~dg~I~iwd~  579 (660)
                      |......+......+++.++++ +.|+.|++||+.+++.+..+.+  |...|.+++|+|+++++++++  .|+.|++|+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC--CSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc--cCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            4321112333334467888888 5899999999999999888865  689999999999999999987  6999999986


Q ss_pred             C
Q 006126          580 S  580 (660)
Q Consensus       580 ~  580 (660)
                      +
T Consensus       311 d  311 (312)
T 4ery_A          311 D  311 (312)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-36  Score=368.33  Aligned_cols=343  Identities=13%  Similarity=0.125  Sum_probs=287.7

Q ss_pred             eEecC--CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          268 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       268 ~~~sp--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      +.|+|  ++.++++|+.||.|++||+.+    +.+... +.  +|.+.|.+++|+|+|+++++++.||.|++||+.++..
T Consensus       705 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~----~~~~~~-~~--~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~  777 (1249)
T 3sfz_A          705 CHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECRNT-MF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE  777 (1249)
T ss_dssp             EEECSSSSCCEEEEEETTSCEEEEETTS----SSEEEE-EC--CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred             EEEecCCCceEEEEEeCCCeEEEEECCC----cchhhe-ec--CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence            58888  556899999999999999984    443332 43  3899999999999999999999999999999977643


Q ss_pred             eee---------------------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126          346 SLE---------------------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF  390 (660)
Q Consensus       346 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~  390 (660)
                      ...                                 .......+.+|+..++........ +|...|.+++|+  +.+++
T Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~  856 (1249)
T 3sfz_A          778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAV  856 (1249)
T ss_dssp             EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEE
T ss_pred             cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEE
Confidence            211                                 111234568899888876654432 689999999999  88999


Q ss_pred             EEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC------------------------
Q 006126          391 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC------------------------  444 (660)
Q Consensus       391 s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~------------------------  444 (660)
                      +++ ||.|++||+.++..+..+.+|...|.+++|+|++ .+++++.|+.|++||+.                        
T Consensus       857 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  936 (1249)
T 3sfz_A          857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM  936 (1249)
T ss_dssp             EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred             EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence            999 9999999999999999999999999999999999 99999999998888743                        


Q ss_pred             -------------------------------------------------------CCceeeEeeccCCCeEEEEEeCCCC
Q 006126          445 -------------------------------------------------------TKKTKAKLKGHQNRITCLAYSLSLN  469 (660)
Q Consensus       445 -------------------------------------------------------~~~~~~~~~~~~~~v~~l~~sp~~~  469 (660)
                                                                             +++....+.+|...|.+++|+|+|+
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A          937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp             EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS
T ss_pred             EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC
Confidence                                                                   2333445567889999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC
Q 006126          470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM  549 (660)
Q Consensus       470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~  549 (660)
                      ++++++.||.|++||+.+++..     .  ..+|.   ..|.+++|+|++.+++.+.|+.|++||+.+++....+..  |
T Consensus      1017 ~l~s~~~dg~i~vwd~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~ 1084 (1249)
T 3sfz_A         1017 TLISSSEDSVIQVWNWQTGDYV-----F--LQAHQ---ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC--H 1084 (1249)
T ss_dssp             CEEEECSSSBEEEEETTTTEEE-----C--CBCCS---SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--C
T ss_pred             EEEEEcCCCEEEEEECCCCceE-----E--EecCC---CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--c
Confidence            9999999999999999996532     1  23555   689999999988777668999999999999999888865  6


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV  629 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i  629 (660)
                      ...|.+++|+|+++++++++.||.|++||+.+++....+.       +| ...+.  +++|+| ++.+|++++.||+|++
T Consensus      1085 ~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~-------~h-~~~v~--~~~~s~-dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A         1085 QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-------GH-NGCVR--CSAFSL-DGILLATGDDNGEIRI 1153 (1249)
T ss_dssp             SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC-------CC-SSCEE--EEEECS-SSSEEEEEETTSCCCE
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec-------cC-CCcEE--EEEECC-CCCEEEEEeCCCEEEE
Confidence            8899999999999999999999999999999998776665       44 44454  999999 8999999999999999


Q ss_pred             EeCCCCceeccC
Q 006126          630 IEPLESEVEWGK  641 (660)
Q Consensus       630 w~~~~~~~~w~~  641 (660)
                      ||+.+++.....
T Consensus      1154 wd~~~~~~~~~~ 1165 (1249)
T 3sfz_A         1154 WNVSDGQLLHSC 1165 (1249)
T ss_dssp             EESSSSCCCCCC
T ss_pred             EECCCCceEEEe
Confidence            999998875543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.6e-36  Score=363.03  Aligned_cols=323  Identities=12%  Similarity=0.154  Sum_probs=268.5

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .+.|+|||+++++|+.||+|++||..+    +.... .+.  +|.+.|.+++|+|+|++|++++.||.|++||+.+++. 
T Consensus       620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~-~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-  691 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGADKTLQVFKAET----GEKLL-DIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-  691 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTT----CCEEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCC----CCEEE-Eec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-
Confidence            359999999999999999999999985    33322 243  4999999999999999999999999999999876654 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF  421 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v  421 (660)
                                          +....  +|...|.+++|+    +.++++++ |+.|++||+.++++...+.+|...|.++
T Consensus       692 --------------------~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~  749 (1249)
T 3sfz_A          692 --------------------VHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC  749 (1249)
T ss_dssp             --------------------EEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred             --------------------EEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence                                11111  699999999998    34788888 9999999999999999999999999999


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe------------------------------------------------
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL------------------------------------------------  452 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~------------------------------------------------  452 (660)
                      +|+|++ .+++|+.||.|++||+.+++....+                                                
T Consensus       750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS  829 (1249)
T ss_dssp             EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred             EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence            999999 9999999999999998776543322                                                


Q ss_pred             -------eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126          453 -------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-  524 (660)
Q Consensus       453 -------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-  524 (660)
                             .+|...|.+++|+|+++++++++.||.|++||+.++..     +. ...+|.   ..|.+++|+|+|+++++ 
T Consensus       830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-----~~-~~~~h~---~~v~~v~~spdg~~l~s~  900 (1249)
T 3sfz_A          830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-----VA-DCRGHL---SWVHGVMFSPDGSSFLTA  900 (1249)
T ss_dssp             CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-----EE-EECCCS---SCEEEEEECTTSSEEEEE
T ss_pred             CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-----ee-ecCCCc---cceEEEEECCCCCEEEEE
Confidence                   16778899999999999999999999999999998543     33 455777   78999999999999999 


Q ss_pred             EecCcEEEEeCCCCcee-----------------------------eeecCC------CCCCCeEEEEEccCCCEEEEEe
Q 006126          525 IHEGQIDVYEAPTLNHT-----------------------------SQLVPD------KMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       525 ~~d~~i~iwd~~~~~~~-----------------------------~~~~~~------~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                      +.|+.|++||+.+....                             ......      .+...+.+++|+|+++++++|+
T Consensus       901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~  980 (1249)
T 3sfz_A          901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD  980 (1249)
T ss_dssp             ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE
T ss_pred             eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc
Confidence            58999999996532100                             000000      1256799999999999999999


Q ss_pred             cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126          570 KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW  639 (660)
Q Consensus       570 ~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w  639 (660)
                      .||.|++||+.+++....+.       +| ...+.  +++|+| ++++|++++.||+|++|++.+++...
T Consensus       981 ~~g~i~i~d~~~~~~~~~~~-------~h-~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A          981 EDGAIKIIELPNNRVFSSGV-------GH-KKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             TTSCCEEEETTTTSCEEECC-------CC-SSCCC--CEEECS-SSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred             CCCCEEEEEcCCCceeeecc-------cC-CCceE--EEEECC-CCCEEEEEcCCCEEEEEECCCCceEE
Confidence            99999999999998877765       44 44455  899999 89999999999999999999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.9e-36  Score=341.14  Aligned_cols=293  Identities=15%  Similarity=0.192  Sum_probs=240.2

Q ss_pred             CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      +|.+.|++++|+|++ ++|++|+.|++|++|++......                .+.....+.  +|...|.+++|+  
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~--~h~~~v~~v~~s~~  441 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLT--GHSHFVEDVVLSSD  441 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEE--CCSSCEEEEEECTT
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceec--CCCCcEEEEEECCC
Confidence            499999999999875 79999999999999998765320                111111111  799999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe---eccCCCeE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRIT  460 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~---~~~~~~v~  460 (660)
                      +++|++|+ ||+|++||+.+++..+.+.+|...|.+++|+|++ .|++|+.|++|++||..........   .+|...|.
T Consensus       442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence            88999999 9999999999999999999999999999999999 9999999999999998754333222   46889999


Q ss_pred             EEEEeCCC--CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 006126          461 CLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT  537 (660)
Q Consensus       461 ~l~~sp~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~  537 (660)
                      +++|+|++  ..+++++.|++|++||+++++.     .. ...+|.   +.|.+++|+|++++|++ +.|+.|++||+++
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-----RS-TLAGHT---GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE-----EE-EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            99999986  6899999999999999998532     22 456777   79999999999999999 5899999999999


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccccc---------CCCCcCcccceEEE
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------QPGTISLELYPLVI  608 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~---------~~gh~~~~v~~~~v  608 (660)
                      ++.+..+..   ...|.+++|+|++.++++++ |+.|+|||+.+++.+..+..+...         +..+....+++.++
T Consensus       593 ~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  668 (694)
T 3dm0_A          593 GKKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL  668 (694)
T ss_dssp             TEEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred             CceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence            998877743   67899999999999888775 566999999999988777532111         00111223456799


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          609 AAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       609 ~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +|+| ++.+|++|+.||+|+||++.
T Consensus       669 ~~sp-dg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          669 NWSA-DGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             EEcC-CCCEEEEEcCCCeEEEEecc
Confidence            9999 89999999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.6e-36  Score=315.31  Aligned_cols=279  Identities=14%  Similarity=0.144  Sum_probs=229.2

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCC----------------CCCCCeEEEEEecCCCEEEEEEC
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN----------------SFGGRVVRLIYSHSGDFLVALTQ  331 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~----------------~h~~~V~~~~~spdg~~l~s~s~  331 (660)
                      +.|+|||++||+|+ ++++++|++.+    +..... +..+                .+...|.+++|+|+|++|++|+.
T Consensus        70 v~fspdg~~la~g~-~~~v~i~~~~~----g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           70 VKFSNDGEYLATGC-NKTTQVYRVSD----GSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  143 (393)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTT----CCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCCEEEEEc-CCcEEEEEecC----CCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence            49999999999976 78999999975    322221 2210                12335999999999999999999


Q ss_pred             CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE
Q 006126          332 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL  408 (660)
Q Consensus       332 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~  408 (660)
                      |+.|++||+.+++.                     +..+  .+|...|.+++|+  +.+|++++ |++|++||+.++++.
T Consensus       144 d~~i~iwd~~~~~~---------------------~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          144 DRLIRIWDIENRKI---------------------VMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             TSCEEEEETTTTEE---------------------EEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCeEEEEECCCCcE---------------------EEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence            99999999876643                     1111  1799999999999  88999999 999999999999988


Q ss_pred             EEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEe-------eccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          409 ATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       409 ~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      ..+. +...+.+++|+| ++ +|++|+.|+.|++||+++++.+..+       .+|...|.+++|+|+|++|++++.|++
T Consensus       201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            8775 456799999999 77 9999999999999999999888776       579999999999999999999999999


Q ss_pred             EEEEEcCCCeeee-------ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 006126          480 LCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL  551 (660)
Q Consensus       480 i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  551 (660)
                      |++||+++.....       ..... ...+|.   ..|.+++|+|++.+|++ +.|+.|++||+.+++++..+.+  |..
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~--h~~  353 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG--HRN  353 (393)
T ss_dssp             EEEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--CSS
T ss_pred             EEEEECCCCCCcccccCCCCCcceE-EEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC--CCC
Confidence            9999998743211       11122 345777   68999999999999999 5899999999999999888865  689


Q ss_pred             CeEEEEEcc------CCCEEEEEecCCeEEEEECCCC
Q 006126          552 PITYATYSC------DGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       552 ~v~~~~~s~------dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      .|.+++|++      ++++|++|+.||.|+||++...
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999999986      6889999999999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-35  Score=305.77  Aligned_cols=290  Identities=15%  Similarity=0.184  Sum_probs=247.7

Q ss_pred             eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126          300 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI  379 (660)
Q Consensus       300 ~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  379 (660)
                      .....+.+  |.+.|.+++|+|+|++|++++.||.|++|++.+++.                     +..+.  +|...|
T Consensus        23 ~~~~~l~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v   77 (369)
T 3zwl_B           23 MKAIKLTG--HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------LGTLD--GHTGTI   77 (369)
T ss_dssp             EEEEEEEC--CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------EEEEC--CCSSCE
T ss_pred             cccEEEEE--eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------hhhhh--hcCCcE
Confidence            33344544  999999999999999999999999999999876653                     11111  699999


Q ss_pred             EEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCc---
Q 006126          380 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---  447 (660)
Q Consensus       380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~---  447 (660)
                      .+++|+  +++|++++ ||.|++||+.+++.+..+. +...+.+++|+|++ .+++++.+     +.|++||+.++.   
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence            999999  88999999 9999999999999999887 88899999999999 99999998     999999987653   


Q ss_pred             --------eeeEeeccCC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126          448 --------TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       448 --------~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                              ....+..|..  .+.+++|+|+++++++++.||.|++||+++..    ..+. ....|.   ..|.+++|+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~~~~~---~~v~~~~~~~  228 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVD-SIDLHE---KSISDMQFSP  228 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEE-EEECCS---SCEEEEEECT
T ss_pred             eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEE-EEecCC---CceeEEEECC
Confidence                    3344555666  99999999999999999999999999998831    2222 344565   6899999999


Q ss_pred             CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC--------------eEEEEECCCC
Q 006126          518 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--------------HVKVFDTSTL  582 (660)
Q Consensus       518 ~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg--------------~I~iwd~~~~  582 (660)
                      ++++|++ +.|+.|++||+++++.+..+.   +...+.+++|+|+++++++++.++              .+++||..++
T Consensus       229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  305 (369)
T 3zwl_B          229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE  305 (369)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred             CCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence            9999999 589999999999999988885   478899999999999999999988              8999999999


Q ss_pred             eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +.+..+.       +| ...+.  +++|+| ++++|++++.||.|+||++..+..
T Consensus       306 ~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          306 EEIGRVQ-------GH-FGPLN--TVAISP-QGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             CEEEEEE-------CC-SSCEE--EEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred             cchhhee-------cc-cCcEE--EEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence            9888876       33 44444  999999 899999999999999999987654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.6e-35  Score=336.09  Aligned_cols=289  Identities=17%  Similarity=0.216  Sum_probs=235.2

Q ss_pred             cccCCCC-CCceeecCCCCceeeEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCC
Q 006126          247 ASSGDDS-NDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD  324 (660)
Q Consensus       247 ~~~g~~~-v~~~~~~~~~~~~~~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~  324 (660)
                      .+++|.. |.++           .|+|++ ++|++|+.|++|++|++.............+.  +|...|.+++|+|+|+
T Consensus       377 ~l~~H~~~V~~v-----------~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~g~  443 (694)
T 3dm0_A          377 TMRAHTDMVTAI-----------ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLSSDGQ  443 (694)
T ss_dssp             EEECCSSCEEEE-----------ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEECTTSS
T ss_pred             hcccCCceeEEE-----------EecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEECCCCC
Confidence            3566666 4444           788775 79999999999999999753222112222343  4999999999999999


Q ss_pred             EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEE
Q 006126          325 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS  401 (660)
Q Consensus       325 ~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd  401 (660)
                      +|++|+.||+|+|||+.++..                     ...+.  +|...|.+++|+  +.+|++++ |++|++||
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVS---------------------TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEeCCCcEEEEECCCCcc---------------------eeEEe--CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            999999999999999876643                     11111  799999999999  88999999 99999999


Q ss_pred             CCCCeEEEEE---cCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126          402 LETFQTLATF---ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       402 ~~~~~~~~~~---~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      ..........   .+|...|.+++|+|++   .+++|+.|++|++||+++++....+.+|.+.|++++|+|++++|++++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            8755443332   3688899999999986   799999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC-------
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-------  548 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-------  548 (660)
                      .||+|++||+++++....      ...+    ..|.+++|+|++.+++++.++.|++||+++++.+..+....       
T Consensus       581 ~Dg~i~iwd~~~~~~~~~------~~~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~  650 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYS------LEAN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA  650 (694)
T ss_dssp             TTSBCEEEETTTTEEEEC------CBCS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC------
T ss_pred             CCCeEEEEECCCCceEEE------ecCC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccc
Confidence            999999999999654322      1222    57999999999999999888889999999998877664321       


Q ss_pred             ----------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          549 ----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       549 ----------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                                +...+++++|+|+|++|++|+.||.|+||++..
T Consensus       651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                      112478999999999999999999999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=324.80  Aligned_cols=320  Identities=10%  Similarity=0.085  Sum_probs=246.0

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      .|+|+++.+++++      .|+..+    ..+..+ ..+  |.+.|.+++|+| +|++|++|+.||+|++||+.+.... 
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g----~~~~~~-~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-   99 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRG----KLIATL-MEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-   99 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCC----CEEEEE-CTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-
T ss_pred             hcCCccccccccc------cccccc----eEEeee-ccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-
Confidence            6788888888776      377642    233332 133  899999999999 9999999999999999998652110 


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC---CCeEEEEEc---------
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLATFA---------  412 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~---~~~~~~~~~---------  412 (660)
                                    ........ .  +|...|.+++|+  +++|++++ ||.|++||+.   +++....+.         
T Consensus       100 --------------~~~~~~~~-~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~  162 (437)
T 3gre_A          100 --------------EVYSSSLT-Y--DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL  162 (437)
T ss_dssp             --------------CCCSCSEE-E--ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred             --------------cccceeee-c--cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEc
Confidence                          00000000 1  489999999999  78999999 9999999994   554444332         


Q ss_pred             -C--CCCCeEEEE--EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126          413 -N--PPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWD  484 (660)
Q Consensus       413 -~--~~~~v~~v~--~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd  484 (660)
                       .  +...+.++.  +++++ .+++|+.|+.|++||+++++.+..+.+  |...|++++|+|++++|++|+.||.|++||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  242 (437)
T 3gre_A          163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD  242 (437)
T ss_dssp             GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence             1  456677777  56888 999999999999999999999999988  899999999999999999999999999999


Q ss_pred             cCCCeeeeceeeeeeeeccCCCCCCeEEEEEe----cCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC-----------
Q 006126          485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH----PDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-----------  548 (660)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~-----------  548 (660)
                      +++++.     +.++..+|.   ..|.+++|+    |++.+++++ .|+.|++||+++++++..+..+.           
T Consensus       243 ~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  314 (437)
T 3gre_A          243 IRFNVL-----IRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI  314 (437)
T ss_dssp             TTTTEE-----EEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred             cCCccE-----EEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence            998543     332222444   579999665    467788885 88999999999998887776431           


Q ss_pred             -------------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc----------------------
Q 006126          549 -------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY----------------------  593 (660)
Q Consensus       549 -------------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~----------------------  593 (660)
                                   |...|++++|+ ++++|++|+.||.|++||+.+++....+..+..                      
T Consensus       315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (437)
T 3gre_A          315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK  393 (437)
T ss_dssp             CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred             ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence                         55668999999 889999999999999999999987776653210                      


Q ss_pred             --------cCCCCcCcccceEEEEEecC-CCCEEEEEeCCCeEEEEe
Q 006126          594 --------AQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       594 --------~~~gh~~~~v~~~~v~~sp~-d~~~l~s~s~Dg~v~iw~  631 (660)
                              ...+| ...|+  +++|++. ++.+|++|+.||.|+||+
T Consensus       394 ~~~~~~~~~~~~h-~~~I~--~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          394 RTSTHSVDDSLYH-HDIIN--SISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             --------------CCCEE--EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccccCccccc-cccee--eEeeeccCCceEEEEEcCCceEEEeC
Confidence                    01113 34444  8999993 277999999999999995

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-37  Score=332.01  Aligned_cols=326  Identities=10%  Similarity=0.010  Sum_probs=225.4

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC------CCEEEEEECCCcEEEEeccCC
Q 006126          270 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       270 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd------g~~l~s~s~dg~i~vw~~~~~  343 (660)
                      .+|+++.+++++.|++|+|||+.+...... ....+..  |.+.|++++|+|+      +.+||+++.||+|++|++..+
T Consensus       169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~  245 (524)
T 2j04_B          169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN  245 (524)
T ss_dssp             -------------CEEEEEEEEETTTCCEE-EEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred             cchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence            357777888899999999999975221110 0111222  7889999999997      579999999999999999765


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCe-EEEEEcCCCCCeEE
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY  420 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~-~~~~~~~~~~~v~~  420 (660)
                      .....        .......  ....  ..+|...|++++|+ +..|++|+ ||+|++||+.++. +...+.+|...|.+
T Consensus       246 ~~~~~--------~~~~~~~--p~~~--l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s  313 (524)
T 2j04_B          246 ATDVH--------VFKMCEK--PSLT--LSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS  313 (524)
T ss_dssp             SSSSS--------EEECCCS--CSEE--ECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred             ccccc--------cceeecC--ceEE--EEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence            42100        0000000  0001  11699999999999 77999999 9999999999764 45668899999999


Q ss_pred             E--EEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126          421 F--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       421 v--~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~  494 (660)
                      +  +|+|++  +|++|+.|++|++||++++++...+.+|..  .|.+++|+|++..+++++.|++|++||++++.     
T Consensus       314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-----  388 (524)
T 2j04_B          314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-----  388 (524)
T ss_dssp             EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----
T ss_pred             EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----
Confidence            9  578886  789999999999999999888878877753  58899999999999999999999999999853     


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC---CCCCCeEEEEEccCCCEEEEEec
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      .+. ...+|.   +.|++++|+|+|++|++ +.|++|++||+..+ .+......   .+...+.+++|+|+|+.+. . .
T Consensus       389 ~~~-~l~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~-~  461 (524)
T 2j04_B          389 AVH-PLVSRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-I-D  461 (524)
T ss_dssp             CCE-EEEECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-E-C
T ss_pred             cce-eeecCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-c-c
Confidence            223 345787   79999999999999999 58999999998643 32222110   1122578999999998552 2 2


Q ss_pred             CCeEEEEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecCCC---CEEEEEeCCCeEEEEeCCC
Q 006126          571 SGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       571 dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~---~~l~s~s~Dg~v~iw~~~~  634 (660)
                      | .+++|+.. ++.....+.       || ...|+  +|+|+| ++   .++|+|+.||+|+||++.-
T Consensus       462 ~-~~~~~~~~~~g~~~~~l~-------gh-~~~V~--~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          462 S-SYEVYPLTVNDVSKAKID-------AH-GINIT--CTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             C-CCCCCC--------------------C-CCSCC--CEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred             C-CceecccccCCcceeeec-------CC-CceEE--EEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence            2 23344433 344455544       44 44566  999999 64   4999999999999999853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-34  Score=296.05  Aligned_cols=274  Identities=12%  Similarity=0.065  Sum_probs=235.7

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+++++++++ ||.|++||+...........+..  .+|...|.+++|+|++++|++++.||.|++|++.+.....
T Consensus        57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  133 (337)
T 1gxr_A           57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC--SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccc--cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce
Confidence            49999999999999 99999999986443334443322  2489999999999999999999999999999987664210


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                         ....  .+|...|.+++|+  ++++++++ ||.|++||+.+++....+..|...+.+++|+
T Consensus       134 -------------------~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          134 -------------------KAEL--TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             -------------------EEEE--ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             -------------------eeec--ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence                               1101  1688899999999  78999999 9999999999999999999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      |++ .|++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.|+.|++||+++++..       ....|
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~  264 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-------QLHLH  264 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-------EECCC
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-------EEcCC
Confidence            999 99999999999999999998887775 7889999999999999999999999999999985421       23455


Q ss_pred             CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          504 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      .   ..|.+++|+|+++++++ +.|+.|++||+.+++.+...   .|...+.+++|+|++++|++++.||.|++|++
T Consensus       265 ~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          265 E---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             S---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             c---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            5   68999999999999999 58999999999999887554   35889999999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.4e-35  Score=308.62  Aligned_cols=285  Identities=16%  Similarity=0.219  Sum_probs=230.6

Q ss_pred             CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      +|...|.+++|+|+| ++|++|+.||.|++|++.+.....                     .....+|...|.+++|+  
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~~~~h~~~v~~~~~~~~  129 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS---------------------FIQGMGPGDAITGMKFNQF  129 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE---------------------EECCCSTTCBEEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce---------------------eeecCCcCCceeEEEeCCC
Confidence            389999999999999 999999999999999987665411                     11111699999999998  


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCeEEEEEcCC---CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~---~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                       +.+|++++ |+.|++||+.+ .....+..+   ...|.+++|+|++ .|++|+.|+.|++||+ +++.+..+.+|...|
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v  207 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV  207 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred             CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence             47899999 99999999985 555555543   4789999999999 9999999999999999 578889999999999


Q ss_pred             EEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCC
Q 006126          460 TCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAP  536 (660)
Q Consensus       460 ~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~  536 (660)
                      .+++|+|+++ ++++++.|+.|++||+++++... ..+. .. +|.   ..|.+++|+| ++.+|++ +.|+.|++||++
T Consensus       208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~-~~-~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-SYIA-EM-PHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-CEEE-EE-ECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-ceEE-Ee-cCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            9999999999 99999999999999998743211 2222 22 465   6899999999 9999999 589999999999


Q ss_pred             CCceeeeecCCC-----CC----------CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126          537 TLNHTSQLVPDK-----MD----------LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL  601 (660)
Q Consensus       537 ~~~~~~~~~~~~-----~~----------~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~  601 (660)
                      +++....+..+.     |.          ..+..++|+|+|++  +|+.||.|++||+.+++.+..+..+     +| ..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~-----~~-~~  353 (383)
T 3ei3_B          282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP-----NA-AG  353 (383)
T ss_dssp             BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT-----TB-CS
T ss_pred             CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC-----CC-Cc
Confidence            888766665321     11          34445666777766  7778999999999999998887632     11 33


Q ss_pred             ccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      .+.  +++|+| ++.+|++|+ ||.|+|||+.+
T Consensus       354 ~~~--~~~~s~-~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          354 IIS--LNKFSP-TGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCC--EEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred             eEE--EEEEec-CccEEEEec-CCcEEEEecCC
Confidence            344  779999 899999997 99999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-35  Score=311.05  Aligned_cols=295  Identities=9%  Similarity=0.053  Sum_probs=239.9

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C-
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G-  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~-  386 (660)
                      +|.+.|.+++|+|  ++|++++.||.|++|++.+.....               .........  +|...|.+++|+ . 
T Consensus        14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~--~h~~~v~~~~~~~~~   74 (397)
T 1sq9_A           14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN---------------PKDKSYSHF--VHKSGLHHVDVLQAI   74 (397)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC---------------GGGGEEEEE--CCTTCEEEEEEEEEE
T ss_pred             hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc---------------CCCcceEEe--cCCCcEEEEEEeccc
Confidence            4999999999999  799999999999999987765100               000111111  699999999999 6 


Q ss_pred             -------CEEEEEe-CCcEEEEECCCCeE-----EEEEcCC-----CCCeEEEEEc----CCC-e-EEEEeCCCeEEEEe
Q 006126          387 -------SHLFSAS-GGKISIFSLETFQT-----LATFANP-----PPIATYFILL----PQD-L-FAFGFDDSSILVHC  442 (660)
Q Consensus       387 -------~~l~s~~-dg~I~iwd~~~~~~-----~~~~~~~-----~~~v~~v~~s----p~~-~-l~s~~~d~~I~iwd  442 (660)
                             .+|++++ ||.|++||+.+++.     ...+..|     ...|.+++|+    |++ . |++++.|+.|++||
T Consensus        75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  154 (397)
T 1sq9_A           75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  154 (397)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence                   6889998 99999999998887     8888888     5899999999    999 8 99999999999999


Q ss_pred             CCC------Cceee-----Eee-------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec--
Q 006126          443 PCT------KKTKA-----KLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG--  502 (660)
Q Consensus       443 ~~~------~~~~~-----~~~-------~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--  502 (660)
                      +.+      ++.+.     .+.       .|...|.+++|+|++ ++++++.||.|++||+++++..     . ....  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-----~-~~~~~~  227 (397)
T 1sq9_A          155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL-----Y-NFESQH  227 (397)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE-----E-EEECCC
T ss_pred             CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee-----E-EEeccc
Confidence            998      77666     774       488999999999999 9999999999999999985432     2 2333  


Q ss_pred             -c---CCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCC-----------CCCCeEEEEEccCCC
Q 006126          503 -L---VPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGK  563 (660)
Q Consensus       503 -~---~~~~~~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~dg~  563 (660)
                       |   .   ..|.+++|+|++++|++ +.|   +.|++||+++++.+..+....           |...|.+++|+|+++
T Consensus       228 ~h~~~~---~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  304 (397)
T 1sq9_A          228 SMINNS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE  304 (397)
T ss_dssp             ---CCC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred             cccccC---CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC
Confidence             5   4   68999999999999999 588   999999999999988886411           688999999999999


Q ss_pred             EEEEEecCCeEEEEECCCCeeEEEeecccccCCCC--------------cCcccceEEEEEecCCC----------CEEE
Q 006126          564 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT--------------ISLELYPLVIAAHPLEP----------NRIA  619 (660)
Q Consensus       564 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh--------------~~~~v~~~~v~~sp~d~----------~~l~  619 (660)
                      +|++|+.||.|++||+.+++.+..+...... .+|              +...+  .+++|+| ++          ++|+
T Consensus       305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v--~~~~~~~-~g~~~~~~~~~~~~l~  380 (397)
T 1sq9_A          305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPGV--FDVKFLK-KGWRSGMGADLNESLC  380 (397)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCCE--EEEEEEC-TTTSBSTTCTTSCEEE
T ss_pred             EEEEEeCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCce--eEEEecc-ccccccccccccceEE
Confidence            9999999999999999999998888721100 011              03334  4999999 77          7999


Q ss_pred             EEeCCCeEEEEeCCCCc
Q 006126          620 LGLTNGRVHVIEPLESE  636 (660)
Q Consensus       620 s~s~Dg~v~iw~~~~~~  636 (660)
                      +++.||.|++|++.+|+
T Consensus       381 s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          381 CVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEETTTEEEEEEEEC--
T ss_pred             EecCCCcEEEEEcCCCC
Confidence            99999999999998763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.9e-34  Score=309.72  Aligned_cols=304  Identities=13%  Similarity=0.168  Sum_probs=249.2

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .+.++++++++|+.||+|++||+.+    +.... .+.  +|.+.|++++|+|++ ++++|+.||+|++||+.++..   
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~----~~~~~-~~~--~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~---  195 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSIN----KKFLL-QLS--GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC---  195 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTT----TEEEE-EEC--CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE---
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCC----CcEEE-EEe--CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE---
Confidence            5566789999999999999999974    33332 243  499999999999998 899999999999999876643   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEECCCCeE----------------
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT----------------  407 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~~~~~~----------------  407 (660)
                                        +....  +|...|.+++|+    +.++++++ ||.|++||+.++..                
T Consensus       196 ------------------~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  255 (464)
T 3v7d_B          196 ------------------THVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  255 (464)
T ss_dssp             ------------------EEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred             ------------------EEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence                              11111  699999999998    47899999 99999999987652                


Q ss_pred             -------EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          408 -------LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       408 -------~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                             ...+.+|...+.++  ++++ .+++|+.|+.|++||+.+++.+..+.+|...|.++.|+|+++++++|+.||.
T Consensus       256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~  333 (464)
T 3v7d_B          256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT  333 (464)
T ss_dssp             GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence                   45677888888876  5677 9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY  558 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  558 (660)
                      |++||+++++.     +. ...+|.   ..|.+++|+  +.++++ +.||.|++||+.++.......   +...+..++|
T Consensus       334 i~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~  399 (464)
T 3v7d_B          334 IRIWDLENGEL-----MY-TLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTF  399 (464)
T ss_dssp             EEEEETTTTEE-----EE-EECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEE
T ss_pred             EEEEECCCCcE-----EE-EEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEE
Confidence            99999998643     33 345676   689999998  567887 689999999999888766653   4677888999


Q ss_pred             ccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          559 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       559 s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      +++++++++|+ ||.|++||+.+++.+..+..      +| ...+.  +++|++  ..++++++.||.+.+|-
T Consensus       400 ~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~------~~-~~~v~--~v~~~~--~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          400 YVSDNILVSGS-ENQFNIYNLRSGKLVHANIL------KD-ADQIW--SVNFKG--KTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EECSSEEEEEE-TTEEEEEETTTCCEEESCTT------TT-CSEEE--EEEEET--TEEEEEEEETTEEEEEE
T ss_pred             EeCCCEEEEec-CCeEEEEECCCCcEEehhhc------cC-CCcEE--EEEecC--CEEEEEEEeCCeEEEEE
Confidence            99999999998 89999999999998875332      22 44444  899975  45666777788766654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.5e-35  Score=307.81  Aligned_cols=325  Identities=10%  Similarity=0.067  Sum_probs=225.5

Q ss_pred             eEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeec------CCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEe
Q 006126          268 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLL------PDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK  339 (660)
Q Consensus       268 ~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l------~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~  339 (660)
                      +.|+| ++++|++++.||.|++||+.+............      ...+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus        49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  128 (408)
T 4a11_B           49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD  128 (408)
T ss_dssp             EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence            39999 999999999999999999986433222221000      0024899999999999 778999999999999999


Q ss_pred             ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEECCCCeEEEEEcC
Q 006126          340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFAN  413 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~l~s~~-dg~I~iwd~~~~~~~~~~~~  413 (660)
                      +.++..                     ....   .+...+.++.+.     +.++++++ +|.|++||+.+++.+..+..
T Consensus       129 ~~~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          129 TNTLQT---------------------ADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             TTTTEE---------------------EEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             CCCCcc---------------------ceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence            876653                     1111   266778888888     33888888 99999999999999999999


Q ss_pred             CCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-eeeEe---------------eccCCCeEEEEEeCCCCEEEEEe
Q 006126          414 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       414 ~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      |...|.+++|+|++  .+++|+.||.|++||++++. .+..+               .+|...|.+++|+|++++|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            99999999999999  58999999999999998765 33333               56889999999999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY  555 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  555 (660)
                      .||.|++||+++++........ .......  .........+.+.+++++.++.|++||+.+++.+..+..  |...|++
T Consensus       265 ~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~  339 (408)
T 4a11_B          265 TDNRMRLWNSSNGENTLVNYGK-VCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDC  339 (408)
T ss_dssp             TTSCEEEEETTTCCBCCCCCCC-CCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             CCCeEEEEECCCCccceecccc-ccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEE
Confidence            9999999999986543221111 0011110  122223333445555557999999999999999988865  6899999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ++|+|++++|++|+.||.|++||+.+++.+......           ..  ...+.|.....+.+++.|+.+++|+...
T Consensus       340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT--KSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred             EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--ccccccccceeecccCccCceeecCCcc
Confidence            999999999999999999999999999877654321           11  2344443455677888899999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.1e-35  Score=306.10  Aligned_cols=298  Identities=10%  Similarity=0.090  Sum_probs=239.1

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.++|.+++|+|+|++|++++.|+.|++|++.+++..                   .+..+.  +|...|.+++|+  ++
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-------------------~~~~~~--~h~~~v~~~~~~~~~~   65 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------------------QVHELK--EHNGQVTGVDWAPDSN   65 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-------------------EEEEEE--CCSSCEEEEEEETTTT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------eeeeec--CCCCcccEEEEeCCCC
Confidence            8999999999999999999999999999998766410                   111111  699999999999  88


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce---eeE-eeccCCCe
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAK-LKGHQNRI  459 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~---~~~-~~~~~~~v  459 (660)
                      +|++++ ||.|++||+.+++....+  ..|...|.+++|+|++ .|++++.|+.|++||++.+..   ... ..+|...|
T Consensus        66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i  145 (372)
T 1k8k_C           66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  145 (372)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence            999999 999999999988765544  5788999999999999 999999999999999988763   333 35689999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-------------eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I  525 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~  525 (660)
                      .+++|+|+++++++++.||.|++||++....             .....+. ...+|.   ..|.+++|+|++++|++ +
T Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~  221 (372)
T 1k8k_C          146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSC---GWVHGVCFSANGSRVAWVS  221 (372)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCS---SCEEEEEECSSSSEEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-ecCCCC---CeEEEEEECCCCCEEEEEe
Confidence            9999999999999999999999999752110             0012233 334566   68999999999999999 5


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC--CeeEE--Eeec-----------
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRC--QINL-----------  590 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~--~~~~~--~~~~-----------  590 (660)
                      .|+.|++||+++++++..+..  |...|.+++|+|+++++++| .|+.|++|++.+  ++...  .+..           
T Consensus       222 ~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          222 HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            899999999999999888865  57899999999999999888 899999999988  53211  1100           


Q ss_pred             -----------c--------cccCCCCcCcccceEEEEEecCCC---CEEEEEeCCCeEEEEeCCCCcee
Q 006126          591 -----------T--------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       591 -----------~--------~~~~~gh~~~~v~~~~v~~sp~d~---~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                                 .        .....|| ...|.  +++|+|.+|   .+|+||+.||+|++|++.+++..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLH-KNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSS-SSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             hhhhhhcccccccccCccccccccccc-cCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence                       0        1111355 44455  999886577   99999999999999999876653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.6e-36  Score=318.92  Aligned_cols=290  Identities=16%  Similarity=0.210  Sum_probs=225.4

Q ss_pred             CCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          310 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       310 h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      |...|++++|+| ++++||+|+.||.|+|||+.......                  .+   ...+|.+.|++++|+   
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~------------------~~---~~~gH~~~V~~l~f~p~~  176 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT------------------FI---KGIGAGGSITGLKFNPLN  176 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE------------------EE---CCCSSSCCCCEEEECSSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee------------------EE---EccCCCCCEEEEEEeCCC
Confidence            788999999999 56789999999999999987654310                  11   111799999999998   


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      +++|++++ ||+|++||++++........  +...+.+++|+|++ +|++|+.||.|++||++ ++.+..+.+|...|.+
T Consensus       177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~  255 (435)
T 4e54_B          177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH  255 (435)
T ss_dssp             TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred             CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence            67999999 99999999987655443333  34467899999999 99999999999999986 5667788999999999


Q ss_pred             EEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126          462 LAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN  539 (660)
Q Consensus       462 l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~  539 (660)
                      ++|+|++. ++++++.|+.|++||+++.+...  .+. ...+|.   ..|.+++|+|+|.+|++ +.|+.|++||+.++.
T Consensus       256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~-~~~~h~---~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFL-YSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             EEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCS-BCCBCS---SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             eeecCCCceEEEEecCcceeeEEecccccccc--eEE-Eeeecc---ccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            99999876 78899999999999998854322  111 234676   68999999999999999 599999999999988


Q ss_pred             eeeeecCCCC----CCCeEEEEEccCCCEEEEEe------------cCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126          540 HTSQLVPDKM----DLPITYATYSCDGKCIYVSC------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL  603 (660)
Q Consensus       540 ~~~~~~~~~~----~~~v~~~~~s~dg~~l~sg~------------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v  603 (660)
                      ....+..+.+    ...+....|+|++.++++++            .++.|++||..+++.+..+..      +| ...+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~------~~-~~~v  402 (435)
T 4e54_B          330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD------PE-SSGI  402 (435)
T ss_dssp             SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC------SS-CCCC
T ss_pred             cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC------CC-CCcE
Confidence            7776654321    12344567788877777664            235799999999998877652      23 4444


Q ss_pred             ceEEE-EEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          604 YPLVI-AAHPLEPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       604 ~~~~v-~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                      .  ++ +|+| +|.+||+|+ |++|+||++.+++.+
T Consensus       403 ~--s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          403 S--SLNEFNP-MGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             C--CEEEECT-TSSCEEEEC-SSEEEECCCC-----
T ss_pred             E--EEEEECC-CCCEEEEEc-CCcEEEEECCcCeee
Confidence            4  55 7999 899999876 789999999988653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.5e-35  Score=303.34  Aligned_cols=293  Identities=12%  Similarity=0.120  Sum_probs=219.7

Q ss_pred             CCCeEEEEEecCCCEEEEEECCC-------cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTA-------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA  383 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg-------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  383 (660)
                      .-||++++|+|||++|++||.+.       .|++|++.........   ..          .........+|...|.+++
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~----------~~~~~~~l~~~~~~v~s~~   80 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QF----------HILSEFALEDNDDSPTAID   80 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HE----------EEEEEEECCTTSCCCCEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---ee----------eeeeEEEccCCCCceEEEE
Confidence            55899999999999999998643       5999998765431110   00          0000011126888899999


Q ss_pred             EeCCEEEEEe------------CCcEEEEECCCCeE----EEEEc-----CCCCCeEEEEEcCCC-eEEE--EeCCCeEE
Q 006126          384 LRGSHLFSAS------------GGKISIFSLETFQT----LATFA-----NPPPIATYFILLPQD-LFAF--GFDDSSIL  439 (660)
Q Consensus       384 ~s~~~l~s~~------------dg~I~iwd~~~~~~----~~~~~-----~~~~~v~~v~~sp~~-~l~s--~~~d~~I~  439 (660)
                      ++++.+++|.            |+.+++|++.+...    .....     .+...+.+++|+||| ++++  ++.|++|+
T Consensus        81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~  160 (365)
T 4h5i_A           81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR  160 (365)
T ss_dssp             EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred             eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence            9877777763            56799999865432    11211     234568899999999 6654  44789999


Q ss_pred             EEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC
Q 006126          440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  519 (660)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  519 (660)
                      +||+.+++.+..+. |...|.+++|+|||+++++++ ++.+.+|+..++....    .....+|.   ..|.+++|+|++
T Consensus       161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~----~~~~~~~~---~~v~~v~fspdg  231 (365)
T 4h5i_A          161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIA----RKTDFDKN---WSLSKINFIADD  231 (365)
T ss_dssp             EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEE----EECCCCTT---EEEEEEEEEETT
T ss_pred             EeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCccee----eeecCCCC---CCEEEEEEcCCC
Confidence            99999999988886 778899999999999999988 4566777777654322    11334565   689999999999


Q ss_pred             cEEEE-EecC----cEEEEeCCCCcee--eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc
Q 006126          520 IHLLS-IHEG----QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA  592 (660)
Q Consensus       520 ~~l~~-~~d~----~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~  592 (660)
                      +++++ +.|+    .+++||+......  .......|...|++++|+|||++||+|+.|+.|+|||+.+++++..+..  
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~--  309 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ--  309 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--
T ss_pred             CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--
Confidence            99998 5565    5888998765432  1222234688999999999999999999999999999999998876532  


Q ss_pred             ccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          593 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       593 ~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                          || ...|+  +++|+| |+++|||||.|++|+||++...
T Consensus       310 ----gH-~~~V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          310 ----AH-SFAIT--EVTISP-DSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ----SS-SSCEE--EEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred             ----cc-cCCEE--EEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence                55 44455  999999 8999999999999999999644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-34  Score=333.61  Aligned_cols=323  Identities=13%  Similarity=0.160  Sum_probs=259.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|||++|++++.||.|+|||+.+   ......  +.  +|..+|.+++|+|+|++|++++.||.|++|++.+++.  
T Consensus        19 i~~sp~~~~la~~~~~g~v~iwd~~~---~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--   89 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSGRVEIWNYET---QVEVRS--IQ--VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--   89 (814)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTT---TEEEEE--EE--CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCC---CceEEE--Ee--cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence            49999999999999999999999974   222333  33  3899999999999999999999999999999876653  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL  423 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~  423 (660)
                                         +....  +|...|++++|+  +.+|++++ ||.|++||+.++ .....+.+|...|.+++|
T Consensus        90 -------------------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           90 -------------------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred             -------------------EEEEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence                               11111  699999999999  88999999 899999999987 777888899999999999


Q ss_pred             cC-CC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126          424 LP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       424 sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  498 (660)
                      +| ++ .+++++.||.|++||+.++.....+..+. ..+.+++|+|  ++.++++++.||.|++||+++++.     +. 
T Consensus       149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~-  222 (814)
T 3mkq_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-----VA-  222 (814)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE-----EE-
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-----EE-
Confidence            99 77 99999999999999999888887777654 8999999999  999999999999999999998543     33 


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCE-EEEEecCCeEEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKV  576 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~sg~~dg~I~i  576 (660)
                      ...+|.   ..|.+++|+|++.++++ +.||.|++||+.+++.+..+..  +...+.+++|+|+|.. +++++.++.+.+
T Consensus       223 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  297 (814)
T 3mkq_A          223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNGFTV  297 (814)
T ss_dssp             EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--SSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred             EEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--CCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence            345666   68999999999999999 5899999999999999888865  5789999999999873 244445777889


Q ss_pred             EECCCCeeEEEeecccc-c-----------------------C-----------CCCcCcccceEEEEEecCCCCEEEEE
Q 006126          577 FDTSTLELRCQINLTAY-A-----------------------Q-----------PGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       577 wd~~~~~~~~~~~~~~~-~-----------------------~-----------~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      |++..+.....+.+... .                       .           .++..  ..+.+++|+| +|++++++
T Consensus       298 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sp-dg~~la~~  374 (814)
T 3mkq_A          298 LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD--VFPQSLAHSP-NGRFVTVV  374 (814)
T ss_dssp             EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS--SCCSEEEECT-TSSEEEEE
T ss_pred             EEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc--cCCceeEECC-CCCEEEEe
Confidence            99875443322221000 0                       0           01111  1234889999 78888888


Q ss_pred             eCCCeEEEEeCCCC
Q 006126          622 LTNGRVHVIEPLES  635 (660)
Q Consensus       622 s~Dg~v~iw~~~~~  635 (660)
                      + ||.+.+|++...
T Consensus       375 ~-~~~~~i~~~~~~  387 (814)
T 3mkq_A          375 G-DGEYVIYTALAW  387 (814)
T ss_dssp             E-TTEEEEEETTTT
T ss_pred             c-CCEEEEEECccc
Confidence            7 888999987543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-35  Score=309.23  Aligned_cols=296  Identities=11%  Similarity=0.143  Sum_probs=239.6

Q ss_pred             CCCCCeEEEEEecCCC-EEEEEECCCcEEEEec----cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126          309 SFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW----QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA  383 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  383 (660)
                      .|.+.|.+++|+|+|+ +|++++.||.|++|++    .++.....   ......+-.+..+..    ...+|...|.+++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~v~~~~  115 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK---LTIIAELRHPFALSA----SSGKTTNQVTCLA  115 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE---EEEEEEEECCCCCC----------CBCEEEEE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc---ccccccccccccccc----cccCCCCceEEEE
Confidence            3789999999999999 9999999999999999    66552000   000000001100000    0013788999999


Q ss_pred             Ee--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-
Q 006126          384 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-  458 (660)
Q Consensus       384 ~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-  458 (660)
                      |+  +++|++++ ||.|++|| .+++.+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+..+... 
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            99  88999999 99999999 6788899999999999999999999 9999999999999999999999988887776 


Q ss_pred             --------------eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          459 --------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       459 --------------v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                                    +.++.|+|++ .+++++.||.|++||+++++.     +. ...+|.   ..|.+++|+|++++|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP-----TG-KLIGHH---GPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             -----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC-----SE-EECCCS---SCEEEEEEETTTTEEEE
T ss_pred             cceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce-----ee-eeccCC---CceEEEEECCCCCEEEE
Confidence                          9999999975 588899999999999998532     22 344566   68999999999999999


Q ss_pred             -EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126          525 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL  603 (660)
Q Consensus       525 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v  603 (660)
                       +.|+.|++||+++++.+..+..  |...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+        ...+
T Consensus       265 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~i  333 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--------GVPI  333 (425)
T ss_dssp             EETTSCEEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--------TCCE
T ss_pred             EcCCCEEEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--------CccE
Confidence             5899999999999988888854  68899999999999 9999999999999999999988887632        3344


Q ss_pred             ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .  +++|+| ++++|++++.||.|++|++.+++
T Consensus       334 ~--~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          334 F--AGRISQ-DGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             E--EEEECT-TSSEEEEEETTSCEEEEECHHHH
T ss_pred             E--EEEEcC-CCCEEEEEECCCeEEEEECCCCc
Confidence            4  999999 89999999999999999998876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.8e-35  Score=305.25  Aligned_cols=290  Identities=14%  Similarity=0.158  Sum_probs=234.3

Q ss_pred             CCCCCeEEEEEecC----CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126          309 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       309 ~h~~~V~~~~~spd----g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      +|..+|.+++|+|+    ...+++++.++.|++|++.++.....                  +.......|...|.+++|
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~   77 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL------------------LQSYVDADADENFYTCAW   77 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE------------------EEEEECSCTTCCEEEEEE
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe------------------eeeccccCCCCcEEEEEe
Confidence            49999999999984    45677777788999999886654111                  110111147789999999


Q ss_pred             e-C-----CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEe---
Q 006126          385 R-G-----SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL---  452 (660)
Q Consensus       385 s-~-----~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~---  452 (660)
                      + .     .+|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .|++|+.|+.|++||+++++.+..+   
T Consensus        78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred             ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence            9 3     4788888 99999999999999999999999999999999 77 9999999999999999999998888   


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee----------------------eeeeeccCCCCCCe
Q 006126          453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL----------------------HSFQTGLVPETTIV  510 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----------------------~~~~~~~~~~~~~v  510 (660)
                      .+|...|.+++|+|++++|++++.||.|++||+++++.......                      .....+|.   ..|
T Consensus       158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v  234 (366)
T 3k26_A          158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYV  234 (366)
T ss_dssp             TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SCC
T ss_pred             ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ceE
Confidence            67999999999999999999999999999999998543211100                      00122355   689


Q ss_pred             EEEEEecCCcEEEE-EecCcEEEEeCCCCce--------------eeeecCCCCCCCeEEEEEccC--CCEEEEEecCCe
Q 006126          511 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH--------------TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGH  573 (660)
Q Consensus       511 ~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d--g~~l~sg~~dg~  573 (660)
                      .+++|+  +.++++ +.|+.|++||+.++..              +..+..  |...|.+++|+|+  +++|++|+.||.
T Consensus       235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~  310 (366)
T 3k26_A          235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGK  310 (366)
T ss_dssp             CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred             EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence            999999  668888 4899999999987654              444543  5788999999999  999999999999


Q ss_pred             EEEEECCCCeeEE----EeecccccCCCCc-CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          574 VKVFDTSTLELRC----QINLTAYAQPGTI-SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       574 I~iwd~~~~~~~~----~~~~~~~~~~gh~-~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      |++||+.+++...    .+.       +|. ...  +.+++|+| ++++|++++.||.|+|||+.
T Consensus       311 i~vwd~~~~~~~~~~~~~~~-------~~~~~~~--v~~~~~s~-~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          311 LYVWDLEVEDPHKAKCTTLT-------HHKCGAA--IRQTSFSR-DSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEEECCSSSGGGCEEEEEC-------CTTCCSC--EEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEECCCCCCccccceEEc-------ccccCCc--eEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence            9999999886432    333       221 334  44999999 89999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=304.86  Aligned_cols=284  Identities=14%  Similarity=0.155  Sum_probs=229.7

Q ss_pred             CCCCeEEEEEecCCCEEE-EEEC---CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe
Q 006126          310 FGGRVVRLIYSHSGDFLV-ALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~-s~s~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  385 (660)
                      |...|.+++|+|++..++ +++.   ||.|++|++.+++...                   ... .  +|...|.+++|+
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-------------------~~~-~--~~~~~v~~~~~~   74 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-------------------LRE-I--EKAKPIKCGTFG   74 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-------------------EEE-E--EESSCEEEEECT
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-------------------eee-e--cccCcEEEEEEc
Confidence            899999999999997655 5554   8999999987665311                   000 1  588999999999


Q ss_pred             -C----CEEEEEe-CCcEEEEECCCCe-EEEEEcCCCCCeEEEEE------cCCC-eEEEEeCCCeEEEEeCCCCc-eee
Q 006126          386 -G----SHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFIL------LPQD-LFAFGFDDSSILVHCPCTKK-TKA  450 (660)
Q Consensus       386 -~----~~l~s~~-dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~------sp~~-~l~s~~~d~~I~iwd~~~~~-~~~  450 (660)
                       .    .+|++++ ||.|++||+.+++ .+..+.+|...|.++.|      +|++ .|++++.|+.|++||+++++ .+.
T Consensus        75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence             4    7899999 9999999999988 88899999999999955      6788 99999999999999999887 677


Q ss_pred             EeeccCC----CeEEEE----EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec---CC
Q 006126          451 KLKGHQN----RITCLA----YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQ  519 (660)
Q Consensus       451 ~~~~~~~----~v~~l~----~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~  519 (660)
                      .+..|.+    .+.++.    |+|+++++++++.||.|++||+++++..     .  ...|.   ..|.+++|+|   ++
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~~~  224 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-----W--ETNIK---NGVCSLEFDRKDISM  224 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-----E--EEECS---SCEEEEEESCSSSSC
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-----e--ecCCC---CceEEEEcCCCCCCC
Confidence            7766554    889998    6889999999999999999999996532     1  23444   6899999999   89


Q ss_pred             cEEEE-EecCcEEEEeCCCCceeeeec---CCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCee----------
Q 006126          520 IHLLS-IHEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL----------  584 (660)
Q Consensus       520 ~~l~~-~~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~----------  584 (660)
                      .++++ +.|+.|++||+++++....+.   ...|...|++++|+|+++ ++++|+.||.|++||+.++..          
T Consensus       225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~  304 (357)
T 3i2n_A          225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE  304 (357)
T ss_dssp             CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred             CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence            99998 589999999998877655543   113689999999999998 899999999999999986532          


Q ss_pred             ---------EEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EEeCCCeEEEEeCCCCc
Q 006126          585 ---------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPLESE  636 (660)
Q Consensus       585 ---------~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s~Dg~v~iw~~~~~~  636 (660)
                               +..+.       +| ...+.  +++|+| ++.+|+ +++.||.|+||++.+.+
T Consensus       305 ~~~~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          305 MGVAGSVSLLQNVT-------LS-TQPIS--SLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CCCCCEEEEEEEEE-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred             cccccccceeeccc-------cC-CCCee--EEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence                     33333       33 44455  999999 788887 89999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-34  Score=297.48  Aligned_cols=278  Identities=12%  Similarity=0.088  Sum_probs=235.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+|++|++++.||.|++||+.+    +.... .+..  |...|.+++|+|++++|++++.||.|++||+.+++.  
T Consensus        38 ~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~-~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--  108 (369)
T 3zwl_B           38 VKYNKEGDLLFSCSKDSSASVWYSLN----GERLG-TLDG--HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC--  108 (369)
T ss_dssp             EEECTTSCEEEEEESSSCEEEEETTT----CCEEE-EECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEeCCC----chhhh-hhhh--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence            39999999999999999999999974    33332 2433  899999999999999999999999999999876654  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C-----CcEEEEECCCCe-----------EE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ-----------TL  408 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d-----g~I~iwd~~~~~-----------~~  408 (660)
                                         +...   .+...|.+++|+  +.++++++ +     +.|.+||+.++.           ..
T Consensus       109 -------------------~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B          109 -------------------VATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             -------------------EEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             -------------------EEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence                               1111   267789999999  88999888 7     999999987653           33


Q ss_pred             EEEcCCCC--CeEEEEEcCCC-eEEEEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126          409 ATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  484 (660)
Q Consensus       409 ~~~~~~~~--~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd  484 (660)
                      ..+..+..  .+.+++|+|++ .|++++.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d  246 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD  246 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence            44455555  89999999999 999999999999999998 788889999999999999999999999999999999999


Q ss_pred             cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--------------cEEEEeCCCCceeeeecCCCC
Q 006126          485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLNHTSQLVPDKM  549 (660)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--------------~i~iwd~~~~~~~~~~~~~~~  549 (660)
                      +++++....      .. +.   ..+.+++|+|++++++++ .++              .+++||..+++.+..+..  |
T Consensus       247 ~~~~~~~~~------~~-~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~  314 (369)
T 3zwl_B          247 VSTLQVLKK------YE-TD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG--H  314 (369)
T ss_dssp             TTTCCEEEE------EE-CS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC--C
T ss_pred             CCCCceeee------ec-CC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec--c
Confidence            998654322      11 22   589999999999999994 565              799999999999988865  6


Q ss_pred             CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126          550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~  588 (660)
                      ...|.+++|+|++++|++++.||.|++|+++++.....+
T Consensus       315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  353 (369)
T 3zwl_B          315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY  353 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence            899999999999999999999999999999887654443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-34  Score=291.20  Aligned_cols=291  Identities=11%  Similarity=0.073  Sum_probs=238.7

Q ss_pred             CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126          243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  321 (660)
Q Consensus       243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp  321 (660)
                      .....+.+|.. +..+           .| |++++|++++.||.|++||+.+    ...... +.  .|...|.+++|+|
T Consensus         9 ~~~~~l~~h~~~v~~~-----------~~-~~~~~l~s~~~dg~v~vw~~~~----~~~~~~-~~--~~~~~v~~~~~~~   69 (313)
T 3odt_A            9 QLSATLKGHDQDVRDV-----------VA-VDDSKVASVSRDGTVRLWSKDD----QWLGTV-VY--TGQGFLNSVCYDS   69 (313)
T ss_dssp             EEEEEECCCSSCEEEE-----------EE-EETTEEEEEETTSEEEEEEESS----SEEEEE-EE--ECSSCEEEEEEET
T ss_pred             HHHHHhhCCCCCcEEE-----------Ee-cCCCEEEEEEcCCcEEEEECCC----CEEEEE-ee--cCCccEEEEEECC
Confidence            34455666665 4443           77 9999999999999999999974    333322 22  2899999999999


Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF  400 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iw  400 (660)
                      ++++|++++.||.+++|++....                  .+..+...  .+|...|.+++|.++++++++ ||.|++|
T Consensus        70 ~~~~l~~~~~dg~i~~~~~~~~~------------------~~~~~~~~--~~~~~~i~~~~~~~~~l~~~~~d~~i~~~  129 (313)
T 3odt_A           70 EKELLLFGGKDTMINGVPLFATS------------------GEDPLYTL--IGHQGNVCSLSFQDGVVISGSWDKTAKVW  129 (313)
T ss_dssp             TTTEEEEEETTSCEEEEETTCCT------------------TSCC-CEE--CCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CCCEEEEecCCCeEEEEEeeecC------------------CCCcccch--hhcccCEEEEEecCCEEEEEeCCCCEEEE
Confidence            99999999999999999875442                  12222221  169999999999988999999 9999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCC
Q 006126          401 SLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGAD  477 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d  477 (660)
                      |  .++....+..|...+.++.|+| ++ .+++++.|+.|++||  .++....+.. |...+.+++|+|++. +++++.|
T Consensus       130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred             c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence            9  7788888999999999999998 77 999999999999999  4567777777 999999999999998 9999999


Q ss_pred             CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126          478 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT  557 (660)
Q Consensus       478 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  557 (660)
                      |.|++||+++++.     +. ...+|.   ..|.+++|+|++.+++++.|+.|++||+++++.+..+..  |...|.+++
T Consensus       205 g~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~  273 (313)
T 3odt_A          205 GLIKLVDMHTGDV-----LR-TYEGHE---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--PAISIWSVD  273 (313)
T ss_dssp             SEEEEEETTTCCE-----EE-EEECCS---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--SSSCEEEEE
T ss_pred             CeEEEEECCchhh-----hh-hhhcCC---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--cCceEEEEE
Confidence            9999999998543     33 345666   689999999999644447999999999999999888865  578999999


Q ss_pred             EccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          558 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       558 ~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      |+|+++ +++++.||.|++||+.+++......
T Consensus       274 ~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          274 CMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             ECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             EccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            999998 5678999999999999987665543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.9e-34  Score=300.55  Aligned_cols=284  Identities=12%  Similarity=0.135  Sum_probs=225.8

Q ss_pred             eEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCce
Q 006126          268 STSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       268 ~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      +.|+|++ ++|++|+.||.|++||+.+    ...... +...+|...|.+++|+| ++++|++++.|+.|++||+.+...
T Consensus        79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (383)
T 3ei3_B           79 LEWHPTHPTTVAVGSKGGDIILWDYDV----QNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI  153 (383)
T ss_dssp             EEECSSCTTEEEEEEBTSCEEEEETTS----TTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred             EEECCCCCCEEEEEcCCCeEEEEeCCC----ccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence            3999999 9999999999999999985    222221 33235999999999999 789999999999999999875332


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                                 ..+.          ...+|...|.+++|+  +.+|++++ |+.|++||+ +++.+..+..|...|.+++
T Consensus       154 -----------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          154 -----------QVFA----------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             -----------EEEE----------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred             -----------EEEe----------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence                       1111          111466889999999  88999999 999999999 5888899999999999999


Q ss_pred             EcCCC--eEEEEeCCCeEEEEeCCC----CceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126          423 LLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       423 ~sp~~--~l~s~~~d~~I~iwd~~~----~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  495 (660)
                      |+|++  .+++|+.|+.|++||+++    +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++......
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            99999  799999999999999997    5666666 6999999999999 99999999999999999999865432211


Q ss_pred             eee-eeeccCC-------CCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126          496 LHS-FQTGLVP-------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       496 ~~~-~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  567 (660)
                      ... ....|..       +...+..++|+|++++ ..+.|+.|++||+.+++.+..+....|...+..++|+|++++|++
T Consensus       291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s  369 (383)
T 3ei3_B          291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS  369 (383)
T ss_dssp             ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred             cccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence            110 0011110       0023444666666666 224799999999999999999977555778888899999999999


Q ss_pred             EecCCeEEEEECCC
Q 006126          568 SCKSGHVKVFDTST  581 (660)
Q Consensus       568 g~~dg~I~iwd~~~  581 (660)
                      |+ ||.|+|||+++
T Consensus       370 ~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          370 GM-GFNILIWNRED  382 (383)
T ss_dssp             EE-TTEEEEEECC-
T ss_pred             ec-CCcEEEEecCC
Confidence            97 99999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-35  Score=313.33  Aligned_cols=291  Identities=15%  Similarity=0.208  Sum_probs=238.2

Q ss_pred             CCCeEEEEEecCCC-EEEEE----------ECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126          311 GGRVVRLIYSHSGD-FLVAL----------TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI  379 (660)
Q Consensus       311 ~~~V~~~~~spdg~-~l~s~----------s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  379 (660)
                      ...|.+++|+|+|+ +|+++          +.|+.|++|++.++...                  ..+...   .|...|
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------~~~~~~---~~~~~v   70 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------KPIASL---QVDSKF   70 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------SCSCCC---CCSSCE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------cEEEEE---ecCCce
Confidence            45788999999997 89999          88999999998766420                  011111   588999


Q ss_pred             EEEEEe--CCEEEEEe-CCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCc---
Q 006126          380 SCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK---  447 (660)
Q Consensus       380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~---  447 (660)
                      .+++|+  +.+|++++ ||.|++||+.+    .+....+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++   
T Consensus        71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP  150 (416)
T ss_dssp             EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred             EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            999999  88999998 99999999987    4588888999999999999998 6 99999999999999999876   


Q ss_pred             ---eee---EeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-
Q 006126          448 ---TKA---KLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-  519 (660)
Q Consensus       448 ---~~~---~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-  519 (660)
                         ...   .+.+|...|.+++|+|+ +.++++++.|+.|++||+++++............+|.   ..|.+++|+|++ 
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~  227 (416)
T 2pm9_A          151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK---QQLSVVEWHPKNS  227 (416)
T ss_dssp             TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC---CCEEEEEECSSCT
T ss_pred             ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC---CceEEEEECCCCC
Confidence               332   34679999999999998 7899999999999999999965433222211111224   689999999997 


Q ss_pred             cEEEE-EecC---cEEEEeCCCC-ceeeeecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccc
Q 006126          520 IHLLS-IHEG---QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY  593 (660)
Q Consensus       520 ~~l~~-~~d~---~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~  593 (660)
                      .++++ +.|+   .|++||++++ .++..+.. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..   
T Consensus       228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~---  303 (416)
T 2pm9_A          228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA---  303 (416)
T ss_dssp             TEEEEEECCSSSCCCCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC---
T ss_pred             CEEEEEECCCCCceEEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC---
Confidence            57777 4777   9999999986 55555541 3689999999999 999999999999999999999998888773   


Q ss_pred             cCCCCcCcccceEEEEEecCCC-CEEEEEeCCCeEEEEeCCCCce
Q 006126          594 AQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       594 ~~~gh~~~~v~~~~v~~sp~d~-~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                          | ...+.  +++|+| ++ .+|++++.||.|+||++.+++.
T Consensus       304 ----~-~~~v~--~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          304 ----R-GNWCF--KTKFAP-EAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             ----S-SSCCC--CEEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             ----C-CCceE--EEEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence                3 44455  899999 66 8999999999999999988764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-34  Score=300.50  Aligned_cols=279  Identities=10%  Similarity=0.053  Sum_probs=230.7

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcce-eeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +.|+|||++|++++.|+.|++||..+    ... ....+.  +|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus        14 ~~~s~~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   87 (372)
T 1k8k_C           14 HAWNKDRTQIAICPNNHEVHIYEKSG----NKWVQVHELK--EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   87 (372)
T ss_dssp             EEECTTSSEEEEECSSSEEEEEEEET----TEEEEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCC----CcEEeeeeec--CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence            49999999999999999999999984    321 111243  38999999999999999999999999999998666421


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeE---EEEE-cCCCCCeE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---LATF-ANPPPIAT  419 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~---~~~~-~~~~~~v~  419 (660)
                      .                     .....+|...|.+++|+  +++|++++ |+.|++||+..+..   ...+ ..|...|.
T Consensus        88 ~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~  146 (372)
T 1k8k_C           88 P---------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  146 (372)
T ss_dssp             E---------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             e---------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence            1                     01111588999999999  88999999 99999999988762   3333 57889999


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEeC------------------CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          420 YFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d~~I~iwd~------------------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                      +++|+|++ .|++++.|+.|++||+                  ..++.+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  226 (372)
T 1k8k_C          147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV  226 (372)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence            99999999 9999999999999995                  4678888898999999999999999999999999999


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC--Cce--e---------------
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT--LNH--T---------------  541 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~--~~~--~---------------  541 (660)
                      ++||+++++.     +. ....|.   ..|.+++|+|++.+++++.|+.|++||+.+  ++.  +               
T Consensus       227 ~i~d~~~~~~-----~~-~~~~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (372)
T 1k8k_C          227 CLADADKKMA-----VA-TLASET---LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT  297 (372)
T ss_dssp             EEEEGGGTTE-----EE-EEECSS---CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred             EEEECCCCce-----eE-EEccCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence            9999998543     33 334555   689999999999999999999999999987  421  0               


Q ss_pred             ---------------------eeecCCCCCCCeEEEEEc-cCC---CEEEEEecCCeEEEEECCCCe
Q 006126          542 ---------------------SQLVPDKMDLPITYATYS-CDG---KCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       542 ---------------------~~~~~~~~~~~v~~~~~s-~dg---~~l~sg~~dg~I~iwd~~~~~  583 (660)
                                           ..+. ..|...|++++|. ++|   ++|++|+.||.|++||+.+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          298 ARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             HHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             hhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                                 1121 2578999999976 677   999999999999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=286.00  Aligned_cols=276  Identities=14%  Similarity=0.157  Sum_probs=234.1

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.+.|.+++| |++++|++++.||.|++|++.+...                     .....  .|...|.+++|+  +
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~   71 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------GTVVY--TGQGFLNSVCYDSEK   71 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------EEEEE--ECSSCEEEEEEETTT
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------EEEee--cCCccEEEEEECCCC
Confidence            39999999999 9999999999999999999866543                     11111  588999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          387 SHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      .+|++++ ||.|++|++...   +....+..|...|.+++|  ++ .+++++.|+.|++||  .++....+..|...+.+
T Consensus        72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~  147 (313)
T 3odt_A           72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD  147 (313)
T ss_dssp             TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred             CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence            8999999 999999998654   667788899999999999  45 999999999999999  67888889999999999


Q ss_pred             EEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126          462 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN  539 (660)
Q Consensus       462 l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~  539 (660)
                      +.|+| ++..+++++.||.|++||...       ........|.   ..+.+++|+|++. +++ +.|+.|++||+++++
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~  216 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD  216 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred             EEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence            99998 999999999999999999433       2221222255   6899999999999 555 699999999999999


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~  619 (660)
                      .+..+..  |...|.+++|+|++ .+++++.||.|++||+.+++....+..+        ...+.  +++|+| ++. ++
T Consensus       217 ~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------~~~i~--~~~~~~-~~~-~~  281 (313)
T 3odt_A          217 VLRTYEG--HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--------AISIW--SVDCMS-NGD-II  281 (313)
T ss_dssp             EEEEEEC--CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--------SSCEE--EEEECT-TSC-EE
T ss_pred             hhhhhhc--CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--------CceEE--EEEEcc-CCC-EE
Confidence            9988865  68999999999999 5889999999999999999988888632        33444  999999 777 66


Q ss_pred             EEeCCCeEEEEeCCCCcee
Q 006126          620 LGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       620 s~s~Dg~v~iw~~~~~~~~  638 (660)
                      +++.||.|++|++.+++..
T Consensus       282 ~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          282 VGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             EEETTSCEEEEESCGGGCC
T ss_pred             EEeCCCcEEEEeCCCCcee
Confidence            7899999999999887653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-34  Score=301.08  Aligned_cols=280  Identities=14%  Similarity=0.173  Sum_probs=230.1

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeee
Q 006126          270 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE  349 (660)
Q Consensus       270 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~  349 (660)
                      +++++..+++++.||.|++||..+    +.......  ..|...|.+++|+|+|++|++|+.||.|++|++.+++.    
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~----  168 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNADS----GSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK----  168 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETTT----CCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----
T ss_pred             EeecCCCEEEEECCCeEEEeeCCC----CcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE----
Confidence            334456788999999999999985    44433221  12789999999999999999999999999999876643    


Q ss_pred             eccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCC
Q 006126          350 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD  427 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~sp~~  427 (660)
                                       +....  +|...|.+++|++++|++++ ||.|++||+. .+.....+.+|...|.+++|+|++
T Consensus       169 -----------------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (401)
T 4aez_A          169 -----------------LRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG  229 (401)
T ss_dssp             -----------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             -----------------EEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence                             11111  69999999999988999999 9999999998 567788889999999999999999


Q ss_pred             -eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEe--CCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          428 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       428 -~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                       .|++|+.|+.|++||+++++.+..+..|...|.+++|+|++. ++++++  .|+.|++||+++++....      .. +
T Consensus       230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~------~~-~  302 (401)
T 4aez_A          230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT------VD-A  302 (401)
T ss_dssp             SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE------EE-C
T ss_pred             CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE------Ee-C
Confidence             999999999999999999999999999999999999999764 555654  799999999998654322      22 2


Q ss_pred             CCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          504 VPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      .   ..|.+++|+|+++++++  + .|+.|++||+.++..........|...|.+++|+|+|++|++++.||.|++|++.
T Consensus       303 ~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          303 G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            2   57999999999999998  3 6899999999987766554434578999999999999999999999999999999


Q ss_pred             CCeeEEEe
Q 006126          581 TLELRCQI  588 (660)
Q Consensus       581 ~~~~~~~~  588 (660)
                      +++.+...
T Consensus       380 ~~~~~~~~  387 (401)
T 4aez_A          380 DGDHVKRP  387 (401)
T ss_dssp             C-------
T ss_pred             CCcccccc
Confidence            98876654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-35  Score=315.44  Aligned_cols=286  Identities=12%  Similarity=0.136  Sum_probs=216.9

Q ss_pred             eEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCce
Q 006126          268 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       268 ~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      ++|+| ++++||+|+.||+|+|||+...   .....  +...+|.+.|.+++|+| ++++|++++.||+|++||+++...
T Consensus       125 l~~~P~~~~~lasGs~dg~i~lWd~~~~---~~~~~--~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~  199 (435)
T 4e54_B          125 LAWHPTHPSTVAVGSKGGDIMLWNFGIK---DKPTF--IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL  199 (435)
T ss_dssp             EEECSSCTTCEEEEETTSCEEEECSSCC---SCCEE--ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEEECCCC---CceeE--EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence            49999 5679999999999999999752   22222  22345999999999998 789999999999999999876543


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                      .           ...          ....+...+.+++|+  +.+|++|+ ||.|++||+. ++.+..+.+|...|.+++
T Consensus       200 ~-----------~~~----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~  257 (435)
T 4e54_B          200 R-----------VFA----------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA  257 (435)
T ss_dssp             E-----------EEE----------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEE
T ss_pred             e-----------EEe----------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeee
Confidence            1           110          111345567889999  88999999 9999999986 566777889999999999


Q ss_pred             EcCCC--eEEEEeCCCeEEEEeCCCCceeeE---eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126          423 LLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH  497 (660)
Q Consensus       423 ~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~---~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  497 (660)
                      |+|++  .+++|+.|+.|++||+++++....   ..+|...|++++|+|+|++|++++.||.|++||++++........+
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~  337 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH  337 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence            99998  788999999999999988765433   3569999999999999999999999999999999987543222111


Q ss_pred             eeeeccCCCCCCeEEEEEecCCcEEEEE-------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEE-EEccCCC
Q 006126          498 SFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA-TYSCDGK  563 (660)
Q Consensus       498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~dg~  563 (660)
                      .......   ..+....|+|++..++++             .++.|++||..+++.+..+.. .|...|.++ +|+|+|+
T Consensus       338 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~  413 (435)
T 4e54_B          338 PHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGD  413 (435)
T ss_dssp             CCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSS
T ss_pred             ccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCC
Confidence            0000000   123345566666655553             235799999999999888765 367788887 6999999


Q ss_pred             EEEEEecCCeEEEEECCCCeeE
Q 006126          564 CIYVSCKSGHVKVFDTSTLELR  585 (660)
Q Consensus       564 ~l~sg~~dg~I~iwd~~~~~~~  585 (660)
                      +|++|+ |+.|+||++++++..
T Consensus       414 ~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          414 TLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CEEEEC-SSEEEECCCC-----
T ss_pred             EEEEEc-CCcEEEEECCcCeee
Confidence            999886 889999999988753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-35  Score=311.12  Aligned_cols=291  Identities=13%  Similarity=0.099  Sum_probs=220.3

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.++|.+++|+|+|++|++++.|+.|++|++.++..                   ..+..+  .+|...|.+++|+  ++
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------~~~~~~--~~h~~~v~~~~~s~~~~   68 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------KHARTF--SDHDKIVTCVDWAPKSN   68 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------EECCCB--CCCSSCEEEEEECTTTC
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------EEEEEE--ecCCceEEEEEEeCCCC
Confidence            678999999999999999999999999999876521                   011111  1699999999999  78


Q ss_pred             EEEEEe-CCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc---eeeEeec-cCCC
Q 006126          388 HLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG-HQNR  458 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~---~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~-~~~~  458 (660)
                      +|++++ |+.|++||+.+++   ....+..|...|.+++|+|++ .|++|+.|+.|++||+++++   ....+.+ |...
T Consensus        69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred             EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence            999999 9999999999877   677778999999999999999 99999999999999999887   4677877 9999


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee-------------eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-------------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-  524 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-  524 (660)
                      |.+++|+|++++|++++.|+.|++||++.....             ....+. .. +|.   ..|.+++|+|++++|++ 
T Consensus       149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~v~~~~~sp~~~~l~~~  223 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA-EY-PSG---GWVHAVGFSPSGNALAYA  223 (377)
T ss_dssp             EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-CC-CCS---SSEEEEEECTTSSCEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh-cc-cCC---ceEEEEEECCCCCEEEEE
Confidence            999999999999999999999999999643211             112333 22 666   78999999999999998 


Q ss_pred             EecCcEEEEeCCCCce----eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe--eEEEee---------
Q 006126          525 IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LRCQIN---------  589 (660)
Q Consensus       525 ~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--~~~~~~---------  589 (660)
                      +.|+.|++||+.+++.    +..+..  |...|.+++|+|+|++|++|+.|+.+ +|+.....  ....+.         
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T 3dwl_C          224 GHDSSVTIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT  300 (377)
T ss_dssp             ETTTEEC-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred             eCCCcEEEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence            5899999999999887    666654  68899999999999999999877766 66655221  000000         


Q ss_pred             -------------------------c---------ccccCCCCcCcccceEEEEEecCCCC---EEEEEeCCCeEEEEeC
Q 006126          590 -------------------------L---------TAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVIEP  632 (660)
Q Consensus       590 -------------------------~---------~~~~~~gh~~~~v~~~~v~~sp~d~~---~l~s~s~Dg~v~iw~~  632 (660)
                                               .         ......+| ...+.  ++.+.+.++.   .|+|||.||+|+|||+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~--~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIA--TLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSSSBCCCCCC-------------------------CCCSSSC-SSCEE--EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccccchhhccccccccccCccc-cceeE--EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                     0         00011124 44444  8887763444   7999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-34  Score=303.27  Aligned_cols=285  Identities=18%  Similarity=0.201  Sum_probs=232.5

Q ss_pred             CCCC--eEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          310 FGGR--VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       310 h~~~--V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      |...  +.+++|+  +..+++++.||.|++|++.++...                     .... ..|...|.+++|+  
T Consensus        90 ~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~---------------------~~~~-~~~~~~v~~v~~s~~  145 (401)
T 4aez_A           90 IIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVS---------------------ALAE-TDESTYVASVKWSHD  145 (401)
T ss_dssp             CCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEE---------------------EEEE-CCTTCCEEEEEECTT
T ss_pred             CcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEe---------------------Eeee-cCCCCCEEEEEECCC
Confidence            5554  4445555  456889999999999998776541                     1111 1488999999999  


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCC-CCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~-~~~~~~~~~~~~~~v~~l~  463 (660)
                      +.+|++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.|+.|++||++ .+..+..+.+|...|.+++
T Consensus       146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA  224 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence            88999999 999999999999999999999999999999432 99999999999999998 5667888899999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCc
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLN  539 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~  539 (660)
                      |+|++++|++++.|+.|++||++++..     +. ...+|.   ..|.+++|+|++..+++ +   .|+.|++||+.+++
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~-~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~  295 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARSSIP-----KF-TKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA  295 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCSSE-----EE-EECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCCCCc-----cE-EecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence            999999999999999999999998543     22 344565   68999999998765554 4   48999999999999


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEE--ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVS--CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR  617 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~  617 (660)
                      .+..+.   +...|.+++|+|++++++++  +.||.|++||+.+++........     +| ...+.  +++|+| ++.+
T Consensus       296 ~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~h-~~~v~--~~~~s~-dg~~  363 (401)
T 4aez_A          296 RVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----AH-DTRVL--YSALSP-DGRI  363 (401)
T ss_dssp             EEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----CC-SSCCC--EEEECT-TSSE
T ss_pred             EEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----CC-CCCEE--EEEECC-CCCE
Confidence            988884   46789999999999999994  48999999999998766654432     44 44455  999999 8999


Q ss_pred             EEEEeCCCeEEEEeCCCCceecc
Q 006126          618 IALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       618 l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      |++++.||.|++|++.+++....
T Consensus       364 l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          364 LSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEEECTTSEEEEEECCC------
T ss_pred             EEEEeCCCcEEEEECCCCccccc
Confidence            99999999999999999887544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-34  Score=306.80  Aligned_cols=285  Identities=12%  Similarity=0.064  Sum_probs=230.9

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      ..+.+++|+|+|++|++++.||.+++|++.+...                     ... + ..| ..+....|+  +++|
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~---------------------~~~-~-~~~-~~~~~~~~~~~~~~l  112 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG---------------------SKM-L-KRA-DYTAVDTAKLQMRRF  112 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET---------------------TTT-S-CSC-CEEEEEEECSSSCEE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccce---------------------eeE-E-ecC-CceEEEEEecCCCEE
Confidence            3455799999999999999999999999765543                     110 0 023 333344556  8899


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      ++++ ||.|++||+.+++....+.+|...|.+++|+|++ .|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus       113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  192 (420)
T 3vl1_A          113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR  192 (420)
T ss_dssp             EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred             EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence            9999 9999999999999998889999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCC------------------CCCCeEEEEEecCCcEEEE-EecC
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP------------------ETTIVNHIQFHPDQIHLLS-IHEG  528 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~sp~~~~l~~-~~d~  528 (660)
                      +++|++++.|+.|++||+++++........   ..+..                  ....+.+++|+|+++++++ +.||
T Consensus       193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          193 GRNVLSASLDGTIRLWECGTGTTIHTFNRK---ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECBT---TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             CCEEEEEcCCCcEEEeECCCCceeEEeecC---CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            999999999999999999987644322111   11110                  0034455556789999999 5899


Q ss_pred             cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceE
Q 006126          529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                      .|++||+++++.+..+.. .|...|.+++|+|+++ +|++|+.||.|++||+.+++. +..+.       +|+...+.  
T Consensus       270 ~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~v~--  339 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-------INEGTPIN--  339 (420)
T ss_dssp             CEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-------ESTTSCEE--
T ss_pred             eEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-------ccCCCCce--
Confidence            999999999988877754 4688999999999999 999999999999999998753 55555       33355454  


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          607 VIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ++ +.| ++.+|++++.||+|++|++..+
T Consensus       340 ~~-~~~-~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          340 NV-YFA-AGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EE-EEE-TTEEEEEETTTEEEEEEEECCT
T ss_pred             EE-EeC-CCCEEEEecCCccEEEEeccCC
Confidence            66 455 5789999999999999998874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-34  Score=299.35  Aligned_cols=283  Identities=11%  Similarity=0.088  Sum_probs=228.5

Q ss_pred             eEecCC----CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC----CCEEEEEECCCcEEEEe
Q 006126          268 STSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWK  339 (660)
Q Consensus       268 ~~~spd----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd----g~~l~s~s~dg~i~vw~  339 (660)
                      +.|+|+    ...+++++.++.|++||.........+.....  ..|...|.+++|+|+    |++|++|+.||.|++||
T Consensus        24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d  101 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD--ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN  101 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC--SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred             EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc--cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence            388884    45677777778999999985332223332222  227789999999999    67999999999999998


Q ss_pred             ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEE---c
Q 006126          340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF---A  412 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~---~  412 (660)
                      +.+++.                     +....  +|...|.+++|+   +.+|++++ ||.|++||+.+++....+   .
T Consensus       102 ~~~~~~---------------------~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  158 (366)
T 3k26_A          102 PITMQC---------------------IKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE  158 (366)
T ss_dssp             TTTCCE---------------------EEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred             chhceE---------------------eeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence            876543                     11111  699999999998   67999999 999999999999999988   6


Q ss_pred             CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec----------------------------cCCCeEEEE
Q 006126          413 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----------------------------HQNRITCLA  463 (660)
Q Consensus       413 ~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~----------------------------~~~~v~~l~  463 (660)
                      .|...|.+++|+|++ .|++++.|+.|++||+++++....+..                            |...|.++.
T Consensus       159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            899999999999999 999999999999999998765544433                            999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeee---------ceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEE-ecCcEE
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQID  531 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~-~d~~i~  531 (660)
                      |+  ++++++++.|+.|++||++++....         ...+. ...+|.   ..|.+++|+|+  +++|+++ .||.|+
T Consensus       239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~~~l~~~~~dg~i~  312 (366)
T 3k26_A          239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-RFDYSQ---CDIWYMRFSMDFWQKMLALGNQVGKLY  312 (366)
T ss_dssp             EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-EEECSS---CCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred             Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec-cccccC---CcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence            98  7799999999999999998854310         01222 345566   68999999999  9999995 889999


Q ss_pred             EEeCCCCcee----eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          532 VYEAPTLNHT----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       532 iwd~~~~~~~----~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      +||+.+++..    ..+..+.|...|++++|+|++++|++|+.||.|++||+.+
T Consensus       313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            9999987644    3565544479999999999999999999999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-33  Score=299.21  Aligned_cols=280  Identities=17%  Similarity=0.206  Sum_probs=230.7

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .++||++ +.||+|. |++|+|||..+    +.+... +..++|...|++++|+|+|++|++|+.||.|++||+.+++. 
T Consensus       110 ~l~wS~~-n~lAvgl-d~tV~lWd~~t----g~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-  181 (420)
T 4gga_A          110 LVDWSSG-NVLAVAL-DNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-  181 (420)
T ss_dssp             CEEECTT-SEEEEEE-TTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred             eEEECCC-CEEEEEe-CCEEEEEECCC----CCEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-
Confidence            4589976 4777665 99999999984    554432 33345889999999999999999999999999999877654 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEc
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILL  424 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~s  424 (660)
                                          +....  +|...+.++++++..|++|+ |+.+++||... ...+..+.+|...+..+.|+
T Consensus       182 --------------------~~~~~--~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          182 --------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             --------------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             --------------------EEEEe--CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence                                11111  79999999999999999999 99999999876 45567788999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCc----eeeEeeccCCCeEEEEEeCCCC-EEEE--EeCCCcEEEEEcCCCeeeeceee
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLN-VLVS--SGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~-~l~s--~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      |++ .+++++.|+.|++||..+++    .+.....|...|.+++|+|++. .+++  |+.|++|++||+.++.....   
T Consensus       240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~---  316 (420)
T 4gga_A          240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---  316 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE---
T ss_pred             CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee---
Confidence            999 99999999999999998765    3456677999999999999654 5554  45799999999999654322   


Q ss_pred             eeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126          497 HSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH  573 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~  573 (660)
                         ...+    ..+.++.|+|++..++++   .|+.|++||+.+++++.++.+  |...|++++|+|||++|++|+.|++
T Consensus       317 ---~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          317 ---VDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             ---EECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             ---eccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCe
Confidence               2233    479999999999999873   589999999999999999865  7899999999999999999999999


Q ss_pred             EEEEECCCCeeEEEe
Q 006126          574 VKVFDTSTLELRCQI  588 (660)
Q Consensus       574 I~iwd~~~~~~~~~~  588 (660)
                      |+|||+.........
T Consensus       388 vriWdv~~~~~~~~~  402 (420)
T 4gga_A          388 LRLWRCFELDPARRR  402 (420)
T ss_dssp             EEEECCSCSSCC---
T ss_pred             EEEEECCCCCccchh
Confidence            999999876554443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.9e-33  Score=294.50  Aligned_cols=284  Identities=14%  Similarity=0.160  Sum_probs=235.1

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      .-.+..++||++ +.|++| .|++|+|||..+++.                     .......+|...|++++|+  |++
T Consensus       105 d~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~---------------------~~~~~~~~~~~~V~sv~fspdg~~  161 (420)
T 4gga_A          105 DYYLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNY  161 (420)
T ss_dssp             CTTCBCEEECTT-SEEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSE
T ss_pred             cccceeEEECCC-CEEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCcEEEEEECCCCCE
Confidence            345778999986 466665 599999998776653                     2211222688899999999  899


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeC
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp  466 (660)
                      |++|+ ||.|++||+.++++++.+.+|...+.++++++. .+++|+.|+.+++||.... ..+..+.+|...+..+.|+|
T Consensus       162 lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            99999 999999999999999999999999998887533 9999999999999998864 45678899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE-EE-E--ecCcEEEEeCCCCceee
Q 006126          467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-I--HEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~-~--~d~~i~iwd~~~~~~~~  542 (660)
                      +++++++++.|+.+++||..+++... ..+. ....|.   ..|.+++|+|++..+ ++ +  .|++|++||+.++++..
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~~~-~~~~-~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEGGW-VPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSSCS-CCSE-EECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred             CCCeeeeeeccccceEEeeccccccc-eeee-eecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence            99999999999999999998865322 1222 344565   689999999976544 44 2  68999999999999988


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      .+..   ...+.++.|+|+++.+++++  .|+.|+|||+.+++++..+.       || ...|.  +++|+| ||.+|||
T Consensus       316 ~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH-~~~V~--~l~~sp-dg~~l~S  381 (420)
T 4gga_A          316 AVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVAS  381 (420)
T ss_dssp             EEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEE
T ss_pred             eecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEE
Confidence            8854   67899999999999998765  68999999999999998886       55 44455  999999 8999999


Q ss_pred             EeCCCeEEEEeCCCCce
Q 006126          621 GLTNGRVHVIEPLESEV  637 (660)
Q Consensus       621 ~s~Dg~v~iw~~~~~~~  637 (660)
                      |+.||+|+|||+.+.++
T Consensus       382 ~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          382 AAADETLRLWRCFELDP  398 (420)
T ss_dssp             EETTTEEEEECCSCSSC
T ss_pred             EecCCeEEEEECCCCCc
Confidence            99999999999977544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-34  Score=305.41  Aligned_cols=309  Identities=12%  Similarity=0.081  Sum_probs=236.2

Q ss_pred             CCCccccc-cCCCC-CCceeecCCCCceeeEecC-CCCEEEEEeCCCcEEEEeccCcCCCccee-eeecCCCCCCCCeEE
Q 006126          241 EGRPLDAS-SGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVR  316 (660)
Q Consensus       241 ~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~  316 (660)
                      ++..+..+ .+|.. |.++           .|+| ++++|++|+.||+|++||+.......... ...+   +|...|.+
T Consensus        51 ~g~~~~~~~~~h~~~V~~~-----------~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~  116 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSS-----------AVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQ  116 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEE-----------EEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEE
T ss_pred             cceEEeeeccCCCCceEEE-----------EECCCCCCEEEEecCCceEEEeECcccccCcccceeeec---cCCCCEEE
Confidence            34555555 66654 4444           9999 99999999999999999997411111010 1111   28999999


Q ss_pred             EEEecCCCEEEEEECCCcEEEEecc---CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEE
Q 006126          317 LIYSHSGDFLVALTQTATHKLWKWQ---SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHL  389 (660)
Q Consensus       317 ~~~spdg~~l~s~s~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l  389 (660)
                      ++|+|++++|++++.||.|++||+.   .++..............+++           .++...+.++.+.    +.+|
T Consensus       117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN-----------FGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG-----------GSSCCCEEEEEEEECSSCEEE
T ss_pred             EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC-----------cccccCceEEEEEEcCCCCEE
Confidence            9999999999999999999999985   33321110000000011110           0266778888855    7789


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEE
Q 006126          390 FSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAY  464 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~  464 (660)
                      ++++ ||.|++||+.+++++..+..  |...|++++|+|++ .|++|+.||.|++||+++++++..+. .|...|.+++|
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  265 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV  265 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence            9999 99999999999999999987  88999999999999 99999999999999999999998886 68889999966


Q ss_pred             eC----CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee------------------eeec--cCCCCCCeEEEEEecCCc
Q 006126          465 SL----SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS------------------FQTG--LVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       465 sp----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~--~~~~~~~v~~~~~sp~~~  520 (660)
                      +|    ++.+|++++.||.|++||+++++......-..                  ...+  |.   ..|.+++|+ +++
T Consensus       266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~v~~l~~~-~~~  341 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL---NALSTISVS-NDK  341 (437)
T ss_dssp             CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG---GGGCCEEEE-TTE
T ss_pred             ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccC---CceEEEEEC-Cce
Confidence            54    67899999999999999999876443221100                  0011  44   579999999 778


Q ss_pred             EEEEE-ecCcEEEEeCCCCceeeeecCC-----------------------------------CCCCCeEEEEEccC--C
Q 006126          521 HLLSI-HEGQIDVYEAPTLNHTSQLVPD-----------------------------------KMDLPITYATYSCD--G  562 (660)
Q Consensus       521 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~v~~~~~s~d--g  562 (660)
                      +|+++ .|+.|++||+.+++....+..+                                   .|...|++++|+++  +
T Consensus       342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~  421 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET  421 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred             EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence            88885 8999999999998887776542                                   17889999999988  7


Q ss_pred             CEEEEEecCCeEEEEE
Q 006126          563 KCIYVSCKSGHVKVFD  578 (660)
Q Consensus       563 ~~l~sg~~dg~I~iwd  578 (660)
                      .+|++|+.||.|+||+
T Consensus       422 ~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          422 PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEETTSCEEEEC
T ss_pred             eEEEEEcCCceEEEeC
Confidence            8999999999999995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.3e-34  Score=297.29  Aligned_cols=282  Identities=12%  Similarity=0.120  Sum_probs=223.3

Q ss_pred             eEecCCCCEE-EEEeC---CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC---CCEEEEEECCCcEEEEec
Q 006126          268 STSLPDADSA-VCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKW  340 (660)
Q Consensus       268 ~~~spdg~~l-~s~~~---dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd---g~~l~s~s~dg~i~vw~~  340 (660)
                      +.|+|++..+ ++++.   ||.|++||+.+    +........  +|...|.+++|+|+   |++|++++.||.|++|++
T Consensus        24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             EEECTTSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             EEEcCCCceEEEecCccCCCcEEEEEeCCC----Ccccceeee--cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            4999999755 45655   89999999985    333322111  38999999999998   799999999999999998


Q ss_pred             cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE------e--CCEEEEEe-CCcEEEEECCCCe-EEEE
Q 006126          341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIFSLETFQ-TLAT  410 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~------s--~~~l~s~~-dg~I~iwd~~~~~-~~~~  410 (660)
                      .++..                    .+...  .+|...|.++.|      +  +++|++++ ||.|++||+.+++ ....
T Consensus        98 ~~~~~--------------------~~~~~--~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           98 EAPEM--------------------PVYSV--KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             TSCSS--------------------CSEEE--CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             CCCCc--------------------cEEEE--EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence            76641                    11111  169999999965      4  77999999 9999999999887 6777


Q ss_pred             EcCCCC----CeEEEE----EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC---CCCEEEEEeCCC
Q 006126          411 FANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADA  478 (660)
Q Consensus       411 ~~~~~~----~v~~v~----~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~s~s~dg  478 (660)
                      +..+..    .+.+++    |+|++ .+++++.|+.|++||+++++.... ..|...|.+++|+|   ++.++++++.||
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            765544    788888    67899 999999999999999999887544 55889999999999   999999999999


Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc-EEEE-EecCcEEEEeCCCCc-----------------
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN-----------------  539 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~-~~d~~i~iwd~~~~~-----------------  539 (660)
                      .|++||+++++........ ...+|.   ..|.+++|+|+++ ++++ +.||.|++||++++.                 
T Consensus       235 ~i~i~d~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~  310 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASV-SEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS  310 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEE-EEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred             eEEEEeCcCCCcccceeee-ccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence            9999999885443322222 234676   7999999999998 6777 589999999997543                 


Q ss_pred             --eeeeecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCee
Q 006126          540 --HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLEL  584 (660)
Q Consensus       540 --~~~~~~~~~~~~~v~~~~~s~dg~~l~-sg~~dg~I~iwd~~~~~~  584 (660)
                        .+..+.  .|...|++++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus       311 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          311 VSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence              344444  3688999999999999998 899999999999987653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-33  Score=298.25  Aligned_cols=282  Identities=12%  Similarity=0.148  Sum_probs=231.6

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCc---ceeeeecCCCCCCCCeEEEEEecC----C---CEEEEEECCCcEEEE
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHS----G---DFLVALTQTATHKLW  338 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~l~~~~h~~~V~~~~~spd----g---~~l~s~s~dg~i~vw  338 (660)
                      .|+|  ++|++++.||.|++||+.......   ....  +.  +|...|.+++|+|+    |   ++|++++.||.|++|
T Consensus        23 ~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw   96 (397)
T 1sq9_A           23 SACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY   96 (397)
T ss_dssp             EECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred             EecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE--Ee--cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence            8888  899999999999999998532100   1333  32  38999999999999    9   999999999999999


Q ss_pred             eccCCceeeeeeccceeEEEecCCCCceeeecccCCC-----CCCeEEEEEe------CCE-EEEEe-CCcEEEEECCC-
Q 006126          339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR------GSH-LFSAS-GGKISIFSLET-  404 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~s------~~~-l~s~~-dg~I~iwd~~~-  404 (660)
                      ++.+.....                ........  +|     ...|.+++|+      +.+ |++++ ||.|++||+.+ 
T Consensus        97 ~~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           97 RITREDETK----------------KVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEECTTTC----------------CEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             EccCCcccc----------------cccceeec--ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence            987654200                00011111  45     5889999998      678 99998 99999999998 


Q ss_pred             -----CeEEE-----EE-------cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec---c---CCCeEE
Q 006126          405 -----FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---H---QNRITC  461 (660)
Q Consensus       405 -----~~~~~-----~~-------~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~---~---~~~v~~  461 (660)
                           ++.+.     .+       ..|...|.+++|+|++.+++++.|+.|++||+++++.+..+..   |   ...|.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence                 66665     66       4588899999999988888999999999999999999999998   9   999999


Q ss_pred             EEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeeceeeeeeeec-------------cCCCCCCeEEEEEecCCcEEEE-
Q 006126          462 LAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG-------------LVPETTIVNHIQFHPDQIHLLS-  524 (660)
Q Consensus       462 l~~sp~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~sp~~~~l~~-  524 (660)
                      ++|+|++++|++++.|   +.|++||+++++..     . ...+             |.   ..|.+++|+|++++|++ 
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-----G-SLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-----E-EECBC--------CCBSBS---SCEEEEEECSSSSEEEEE
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCccc-----c-eeccCcccccccccccccC---CcEEEEEECCCCCEEEEE
Confidence            9999999999999999   99999999986433     2 2233             55   68999999999999999 


Q ss_pred             EecCcEEEEeCCCCceeeeecCC----CC---------------CCCeEEEEEccCC----------CEEEEEecCCeEE
Q 006126          525 IHEGQIDVYEAPTLNHTSQLVPD----KM---------------DLPITYATYSCDG----------KCIYVSCKSGHVK  575 (660)
Q Consensus       525 ~~d~~i~iwd~~~~~~~~~~~~~----~~---------------~~~v~~~~~s~dg----------~~l~sg~~dg~I~  575 (660)
                      +.|+.|++||+++++.+..+...    .|               ...|.+++|+|+|          ++|++|+.||.|+
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence            58999999999999998888711    24               8899999999998          7999999999999


Q ss_pred             EEECCCCe
Q 006126          576 VFDTSTLE  583 (660)
Q Consensus       576 iwd~~~~~  583 (660)
                      +|++.+|+
T Consensus       390 iw~~~~g~  397 (397)
T 1sq9_A          390 WFREAGGK  397 (397)
T ss_dssp             EEEEEC--
T ss_pred             EEEcCCCC
Confidence            99998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.8e-34  Score=299.24  Aligned_cols=324  Identities=15%  Similarity=0.150  Sum_probs=245.0

Q ss_pred             CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecC
Q 006126          283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP  361 (660)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  361 (660)
                      ++.+++|++..    ...... +.  +|.+.|.+++|+| +|++|++++.||.|++|++.+..........    ...  
T Consensus        22 ~~~~~v~~~~~----~~~~~~-~~--~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~--   88 (408)
T 4a11_B           22 ESTRRVLGLEL----NKDRDV-ER--IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVC--   88 (408)
T ss_dssp             HHHHHHHTEEE----CTTEEE-CC--CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEE--
T ss_pred             cCcceeecccc----Ccceee-ee--ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccc--
Confidence            45577788763    333322 33  3999999999999 9999999999999999999876542210000    000  


Q ss_pred             CCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC---C-eEEEEe
Q 006126          362 SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D-LFAFGF  433 (660)
Q Consensus       362 ~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~---~-~l~s~~  433 (660)
                          ........+|...|.+++|+   +.+|++++ ||.|++||+.+++....+. +...+.++.|+|.   + .+++++
T Consensus        89 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  163 (408)
T 4a11_B           89 ----SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT  163 (408)
T ss_dssp             ----EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE
T ss_pred             ----cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc
Confidence                00000112599999999998   56899999 9999999999999888876 6778899999884   4 899999


Q ss_pred             CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeece----------eeeeeeec
Q 006126          434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSK----------FLHSFQTG  502 (660)
Q Consensus       434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~----------~~~~~~~~  502 (660)
                      .|+.|++||+++++.+..+.+|...|.+++|+|+++ .+++++.||.|++||++++......          .......+
T Consensus       164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
T 4a11_B          164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA  243 (408)
T ss_dssp             SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred             CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence            999999999999999999999999999999999998 5899999999999999875411000          00111235


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC---CCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      |.   ..|.+++|+|++++|++ +.|+.|++||+.+++....+.....   ...+........+..+++++.|+.|++||
T Consensus       244 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d  320 (408)
T 4a11_B          244 HN---GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT  320 (408)
T ss_dssp             CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred             cc---CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence            55   68999999999999999 5899999999998887655433211   11222222234456677778899999999


Q ss_pred             CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          579 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                      +.+++.+..+.       +| ...+.  +++|+| ++.+|++++.||.|++|++.+++..
T Consensus       321 ~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          321 VYSGEQITMLK-------GH-YKTVD--CCVFQS-NFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             TTTCCEEEEEC-------CC-SSCEE--EEEEET-TTTEEEEEETTSCEEEEEECC----
T ss_pred             CcCCcceeeec-------cC-CCeEE--EEEEcC-CCCEEEEECCCCeEEEEeCCCCCcc
Confidence            99999998886       33 44455  999999 8999999999999999999988763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-32  Score=296.24  Aligned_cols=278  Identities=13%  Similarity=0.162  Sum_probs=235.6

Q ss_pred             CCCCe-EEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC
Q 006126          310 FGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS  387 (660)
Q Consensus       310 h~~~V-~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~  387 (660)
                      |...| .++.|  ++++|++|+.||.|++||+.+++.                     +..+.  +|...|.+++|+ +.
T Consensus       120 h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~V~~l~~~~~~  174 (464)
T 3v7d_B          120 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF---------------------LLQLS--GHDGGVWALKYAHGG  174 (464)
T ss_dssp             CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE---------------------EEEEC--CCSSCEEEEEECSTT
T ss_pred             CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE---------------------EEEEe--CCCcCEEEEEEcCCC
Confidence            77775 55555  578999999999999999876653                     11111  799999999999 66


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc--CCC-eEEEEeCCCeEEEEeCCCCce---------------
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL--PQD-LFAFGFDDSSILVHCPCTKKT---------------  448 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s--p~~-~l~s~~~d~~I~iwd~~~~~~---------------  448 (660)
                      +|++|+ ||+|++||+.+++.+..+.+|...|.+++|+  +++ .+++|+.|+.|++||+.++..               
T Consensus       175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence            999999 9999999999999999999999999999998  577 999999999999999987653               


Q ss_pred             --------eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          449 --------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       449 --------~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                              +..+.+|...|.++  +++++++++++.||.|++||+++++.     +. ...+|.   ..|.+++|+|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-----~~-~~~~~~---~~v~~~~~~~~~~  323 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-----LY-ILSGHT---DRIYSTIYDHERK  323 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE-----EE-EECCCS---SCEEEEEEETTTT
T ss_pred             ccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE-----EE-EecCCC---CCEEEEEEcCCCC
Confidence                    45677888888886  67789999999999999999998543     33 345676   6899999999999


Q ss_pred             EEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126          521 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI  599 (660)
Q Consensus       521 ~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~  599 (660)
                      ++++ +.|+.|++||+++++++..+..  |...|.+++|+  ++++++|+.||.|++||+.+++.......         
T Consensus       324 ~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---------  390 (464)
T 3v7d_B          324 RCISASMDTTIRIWDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH---------  390 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC---------
T ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC---------
Confidence            9999 5899999999999999988865  68999999997  68999999999999999999876655431         


Q ss_pred             CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126          600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      ...+.  .++|+| ++.++++++ ||.|++||+.+++....
T Consensus       391 ~~~~~--~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          391 TNLSA--ITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             TTCCC--EEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             CCCcc--EEEEEe-CCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            33344  789999 899999998 89999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.5e-33  Score=320.64  Aligned_cols=311  Identities=16%  Similarity=0.183  Sum_probs=245.4

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+|++|++++.||.|++||+.+    +.... .+.  +|.+.|.+++|+|+|++|++++.||.|++|++.++..  
T Consensus        61 ~~~s~~~~~l~~~~~dg~i~vw~~~~----~~~~~-~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--  131 (814)
T 3mkq_A           61 GKFIARKNWIIVGSDDFRIRVFNYNT----GEKVV-DFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--  131 (814)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEETTT----CCEEE-EEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE--
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCC----CcEEE-EEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce--
Confidence            49999999999999999999999985    33322 233  3899999999999999999999999999999876532  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFI  422 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~  422 (660)
                                        ......  +|...|.+++|+   +..|++++ ||.|++||+.++.....+..+. ..+.+++
T Consensus       132 ------------------~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~  191 (814)
T 3mkq_A          132 ------------------LEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD  191 (814)
T ss_dssp             ------------------EEEEEE--CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred             ------------------EEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence                              111111  689999999998   56899999 9999999999888877777554 8899999


Q ss_pred             EcC--CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          423 LLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       423 ~sp--~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      |+|  ++ .+++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.++++++.||.|++||+.+++..     . .
T Consensus       192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-----~-~  265 (814)
T 3mkq_A          192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-----K-T  265 (814)
T ss_dssp             ECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE-----E-E
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----E-E
Confidence            999  88 9999999999999999999999999999999999999999999999999999999999985432     2 2


Q ss_pred             eeccCCCCCCeEEEEEecCCc--EEEEEecCcEEEEeCCCCceeeeecC-------------------------------
Q 006126          500 QTGLVPETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQLVP-------------------------------  546 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~-------------------------------  546 (660)
                      ...|.   ..+.+++|+|++.  +++++.++.+.+|++..+.....+..                               
T Consensus       266 ~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (814)
T 3mkq_A          266 LNVGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD  342 (814)
T ss_dssp             ECCSS---SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred             eecCC---CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence            33444   5899999999997  56668889999999765432221110                               


Q ss_pred             ----------CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          547 ----------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       547 ----------~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                                ..+...+.+++|+|+|+++++++ ||.+.+|++........             ..+.  +++|+| +++
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~-------------~~i~--~~~~sp-dg~  405 (814)
T 3mkq_A          343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAF-------------GKCQ--DFVWGP-DSN  405 (814)
T ss_dssp             SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEE-------------EECS--EEEECT-TSS
T ss_pred             ccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCC-------------CceE--EEEEeC-CCC
Confidence                      11344678999999999999998 89999999876543221             1122  566666 566


Q ss_pred             EEEEEeCCCeEEEEeCC
Q 006126          617 RIALGLTNGRVHVIEPL  633 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~  633 (660)
                      ++++++.||+|++|+..
T Consensus       406 ~la~~~~~g~v~l~~~~  422 (814)
T 3mkq_A          406 SYALIDETGQIKYYKNF  422 (814)
T ss_dssp             CEEEECTTCCEEEEETT
T ss_pred             eEEEEeCCCcEEEEECC
Confidence            66666666666666543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-33  Score=282.17  Aligned_cols=247  Identities=14%  Similarity=0.173  Sum_probs=203.4

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|.+++|+|+|++||+|+.|++|+||++.....                   ..+..+  .+|...|.+++|+   
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l--~gH~~~V~~v~~s~~~   65 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK   65 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEE--CCCSSCEEEEEECCGG
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEE--ccccCCeEEEEecCCC
Confidence            4999999999999999999999999999999864321                   111111  1799999999996   


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCce--eeEeeccC
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQ  456 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~--~~~~~~~~  456 (660)
                       +++|++|+ |++|++||+.+++  .+..+..|...|.+++|+|+  + .|++|+.|+.|++||++++..  ...+.+|.
T Consensus        66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence             67999999 9999999999874  56677889999999999998  7 999999999999999987632  45678899


Q ss_pred             CCeEEEEEeCC-------------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC---c
Q 006126          457 NRITCLAYSLS-------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---I  520 (660)
Q Consensus       457 ~~v~~l~~sp~-------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~  520 (660)
                      ..|.+++|+|+             +++|++|+.|++|++||++++.... .... ...+|.   ..|.+++|+|++   .
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~-~l~~H~---~~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS  220 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEE-EecCCC---CceEEEEECCCCCCce
Confidence            99999999997             5799999999999999998754211 1222 456787   799999999985   7


Q ss_pred             EEEE-EecCcEEEEeCCCCc---eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          521 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       521 ~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      +|++ +.|++|++||+++..   ....+....|...|.+++|+|+|++|++++.||.|+||+...
T Consensus       221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            8888 589999999997643   112232234678999999999999999999999999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=302.96  Aligned_cols=303  Identities=11%  Similarity=0.093  Sum_probs=223.3

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCc--eeeecccCCCC-----------
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPK-----------  376 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~-----------  376 (660)
                      |.+.|.+++|+|+|++||+|+.||.|+||++.+......            ...+.  +...+.  +|.           
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~------------~~~~~~~~~~~~~--~h~~~~~~~~~~~~   92 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS------------HSRGEYNVYSTFQ--SHEPEFDYLKSLEI   92 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C------------CCCCCEEEEEEEE--CCCCEEEGGGTEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc------------ccccceeEecccc--cccccccccccccc
Confidence            688999999999999999999999999999887652100            00000  111111  576           


Q ss_pred             -CCeEEEEEe--C--CEEEEEe-CCcEEEEECCCCeEE---------------------------------------EE-
Q 006126          377 -DSISCFALR--G--SHLFSAS-GGKISIFSLETFQTL---------------------------------------AT-  410 (660)
Q Consensus       377 -~~v~~v~~s--~--~~l~s~~-dg~I~iwd~~~~~~~---------------------------------------~~-  410 (660)
                       ..|.+++|+  +  .+|++++ |+.|++||+.++...                                       +. 
T Consensus        93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B           93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence             889999999  4  6899999 999999999765432                                       12 


Q ss_pred             EcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC-Cceee-------EeeccCCCeEEEEEeCCC-CEEEEEeCCCcE
Q 006126          411 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKA-------KLKGHQNRITCLAYSLSL-NVLVSSGADAQL  480 (660)
Q Consensus       411 ~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~-~~~~~-------~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i  480 (660)
                      ..+|...|.+++|+|++ .|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++ ++|++++.||.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            35799999999999999 99998 799999999984 44444       356799999999999998 999999999999


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCC---------CCCCeEEEEEecCCcEEEEEecCcEEEEeCCC-CceeeeecCCCCC
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDKMD  550 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~~~  550 (660)
                      ++||+++++.... .+. ...+|..         ....|.+++|+|+|++|+++.++.|++||+++ ++++..+..+...
T Consensus       252 ~iwd~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          252 RLCDMRASALCDR-HSK-LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             EEEETTTCSSSCT-TCE-EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred             EEEECcCCccccc-eee-EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence            9999998653110 122 2334430         00279999999999999996559999999997 8888887653210


Q ss_pred             C-------------CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccccc-------------CCC-------
Q 006126          551 L-------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------QPG-------  597 (660)
Q Consensus       551 ~-------------~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-------------~~g-------  597 (660)
                      .             .+..++|+|++++|++|+.||.|++||+.+++.+.. ..+...             ..+       
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRKKDEI  408 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcccccc
Confidence            1             134599999999999999999999999999887642 211000             000       


Q ss_pred             ---CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          598 ---TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       598 ---h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                         ..+..-.+..++||| ++++||+++.++ +++|.-
T Consensus       409 ~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          409 SVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred             cccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence               001111245899999 899999998776 888864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=279.58  Aligned_cols=280  Identities=14%  Similarity=0.180  Sum_probs=229.3

Q ss_pred             CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126          313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF  390 (660)
Q Consensus       313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~  390 (660)
                      ...+|+||+++ .||+| .|++|+|||+.+++.                     +......+|...|.+++|+  +++|+
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~---------------------~~~~~~~~~~~~V~~v~~~~~~~~l~   83 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYLA   83 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCeEEEEEECCCCCEEE
Confidence            35789999986 56655 599999998776653                     2222222688899999999  89999


Q ss_pred             EEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCC
Q 006126          391 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       391 s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      +|+ ||+|++||+.+++++..+.+|...+.++.+  ++ .+++|+.++.+++|+...+ ..+..+.+|...+.++.++++
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence            999 999999999999999999999988876655  45 8999999999999998875 456778899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE---E-ecCcEEEEeCCCCceeee
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I-HEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~---~-~d~~i~iwd~~~~~~~~~  543 (660)
                      ++++++++.|+.|++||+++++...... . ....+.   +.|.+++++|++..++.   + .++.|++||.........
T Consensus       162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~  236 (318)
T 4ggc_A          162 GRHLASGGNDNLVNVWPSAPGEGGWVPL-Q-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  236 (318)
T ss_dssp             SSEEEEEETTSCEEEEESSCBTTBSCCS-E-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEecCcceeEEECCCCcccccce-e-eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence            9999999999999999999865332211 1 233444   68999999998765543   2 678999999998887666


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      ..   +...+..++|+|+++.+++++  .|+.|+|||+.+++++..+.       || ...|+  +++|+| ++++||||
T Consensus       237 ~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH-~~~V~--~l~~sp-dg~~l~S~  302 (318)
T 4ggc_A          237 VD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVASA  302 (318)
T ss_dssp             EE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEEE
T ss_pred             cc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEE
Confidence            53   477899999999999888765  78999999999999998886       55 44555  999999 89999999


Q ss_pred             eCCCeEEEEeCCCCc
Q 006126          622 LTNGRVHVIEPLESE  636 (660)
Q Consensus       622 s~Dg~v~iw~~~~~~  636 (660)
                      |.||+|+|||+.+.+
T Consensus       303 s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          303 AADETLRLWRCFELD  317 (318)
T ss_dssp             ETTTEEEEECCSCCC
T ss_pred             ecCCeEEEEECCCCC
Confidence            999999999997654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=279.28  Aligned_cols=274  Identities=16%  Similarity=0.204  Sum_probs=225.5

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++||+++ .||+| .|++|+|||..+    +++... +..++|...|.+++|+|+|++|++|+.||+|++|++.+++.  
T Consensus        31 l~WS~~~-~lAvg-~D~tV~iWd~~t----g~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~--  101 (318)
T 4ggc_A           31 VDWSSGN-VLAVA-LDNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--  101 (318)
T ss_dssp             EEECTTS-EEEEE-ETTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred             EEECCCC-EEEEE-eCCEEEEEECCC----CCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence            5899987 66665 599999999984    444432 33345899999999999999999999999999999877654  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcC
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP  425 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp  425 (660)
                                         +....  +|...+.++.+.+..+++++ ++.+++|+...+ ..+..+.+|...+.++.+++
T Consensus       102 -------------------~~~~~--~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A          102 -------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             -------------------EEEEE--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             -------------------EEEec--CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence                               11111  68888888877799999999 899999998875 45677889999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEeCCCCce----eeEeeccCCCeEEEEEeCCCCEE---EEEeCCCcEEEEEcCCCeeeeceeee
Q 006126          426 QD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVL---VSSGADAQLCVWDAVGWKKLCSKFLH  497 (660)
Q Consensus       426 ~~-~l~s~~~d~~I~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l---~s~s~dg~i~vwd~~~~~~~~~~~~~  497 (660)
                      ++ .+++++.|+.|++||+++++.    ......+.+.|.++.++|++..+   ++++.+++|++||.+.....     .
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~  235 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S  235 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----E
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----c
Confidence            99 999999999999999998754    34455688899999999976533   35677899999999885432     1


Q ss_pred             eeeeccCCCCCCeEEEEEecCCcEEEE-E--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          498 SFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                        ...+.   ..+..+.|+|++..+++ +  .|+.|++||+++++++.++.+  |...|++++|+|||++|++|+.||.|
T Consensus       236 --~~~~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v  308 (318)
T 4ggc_A          236 --AVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETL  308 (318)
T ss_dssp             --EEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred             --cccce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeE
Confidence              12222   57999999999999887 3  689999999999999999865  78999999999999999999999999


Q ss_pred             EEEECCCCe
Q 006126          575 KVFDTSTLE  583 (660)
Q Consensus       575 ~iwd~~~~~  583 (660)
                      +|||+....
T Consensus       309 ~iWd~~~~d  317 (318)
T 4ggc_A          309 RLWRCFELD  317 (318)
T ss_dssp             EEECCSCCC
T ss_pred             EEEECCCCC
Confidence            999997643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-34  Score=300.28  Aligned_cols=280  Identities=10%  Similarity=0.018  Sum_probs=214.3

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcc-eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +.|+|||++|++++.|+.|++||+.+    .. .....+.  +|...|.+++|+|+|++|++++.||.|++||+.++...
T Consensus        17 ~~~s~~g~~l~~~~~d~~i~iw~~~~----~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           17 HAFNSQRTEFVTTTATNQVELYEQDG----NGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             CEECSSSSEEECCCSSSCBCEEEEET----TEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred             EEECCCCCEEEEecCCCEEEEEEccC----CceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence            39999999999999999999999984    31 1112243  38999999999999999999999999999998765410


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe---EEEEEcC-CCCCeE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN-PPPIAT  419 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~---~~~~~~~-~~~~v~  419 (660)
                                        ....  ...+|...|.+++|+  +++|++++ |+.|++||+.+++   ....+.. |...|.
T Consensus        91 ------------------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C           91 ------------------KQTL--VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             ------------------CCEE--ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred             ------------------eeee--EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence                              0011  111699999999999  88999999 9999999999887   4677777 999999


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEeCC------------------CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          420 YFILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d~~I~iwd~~------------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                      +++|+|++ +|++|+.|+.|++||+.                  .++++..+ +|...|.+++|+|++++|++++.||.|
T Consensus       151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i  229 (377)
T 3dwl_C          151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV  229 (377)
T ss_dssp             EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence            99999999 99999999999999985                  35566667 899999999999999999999999999


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce--eee---------------
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH--TSQ---------------  543 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~--~~~---------------  543 (660)
                      ++||+++++... ..+. ...+|.   ..|.+++|+|++++|+++.++.+.+|+......  ...               
T Consensus       230 ~iwd~~~~~~~~-~~~~-~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T 3dwl_C          230 TIAYPSAPEQPP-RALI-TVKLSQ---LPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGN  304 (377)
T ss_dssp             C-CEECSTTSCE-EECC-CEECSS---SCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSS
T ss_pred             EEEECCCCCCcc-eeeE-eecCCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccc
Confidence            999999865311 1133 455676   689999999999999998777777888752210  000               


Q ss_pred             -------------------ec--------------CCCCCCCeEEEEEccCC-C---EEEEEecCCeEEEEEC
Q 006126          544 -------------------LV--------------PDKMDLPITYATYSCDG-K---CIYVSCKSGHVKVFDT  579 (660)
Q Consensus       544 -------------------~~--------------~~~~~~~v~~~~~s~dg-~---~l~sg~~dg~I~iwd~  579 (660)
                                         +.              ...|...|+++++.+.+ .   .+++|+.||.|+|||+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          305 TGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             BCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                               00              01278899999976543 3   6999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.2e-33  Score=282.02  Aligned_cols=248  Identities=11%  Similarity=0.077  Sum_probs=204.6

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT  445 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~  445 (660)
                      +|...|++++|+  |++|++|+ |++|++||+.+  ++.+.++.+|...|.+++|+|+  + .|++|+.|++|++||+++
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            799999999999  89999999 99999999974  4678899999999999999864  7 999999999999999998


Q ss_pred             Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---
Q 006126          446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---  518 (660)
Q Consensus       446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---  518 (660)
                      ++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||++++...   ... ...+|.   ..|.+++|+|+   
T Consensus        87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---~~~-~~~~h~---~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---SPI-IIDAHA---IGVNSASWAPATIE  159 (297)
T ss_dssp             SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---CCE-EEECCS---SCEEEEEECCCC--
T ss_pred             CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---eee-eeeccc---CccceEeecCCccc
Confidence            74  56677889999999999997  899999999999999999875321   112 456777   68999999997   


Q ss_pred             ----------CcEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccCC---CEEEEEecCCeEEEEECC
Q 006126          519 ----------QIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       519 ----------~~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~dg---~~l~sg~~dg~I~iwd~~  580 (660)
                                +++|++ +.|+.|++||++++.    ....+.  .|...|.+++|+|++   .+|++|+.|+.|+|||+.
T Consensus       160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                      468888 589999999998766    445554  478999999999985   899999999999999998


Q ss_pred             CCee--E-EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126          581 TLEL--R-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       581 ~~~~--~-~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      ++..  . ..+.     ..+| ...++  +++|+| ++++||+++.||+|+||+.... +.|.
T Consensus       238 ~~~~~~~~~~~~-----~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~  290 (297)
T 2pm7_B          238 NEQGPWKKTLLK-----EEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWE  290 (297)
T ss_dssp             STTSCCEEEESS-----SSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred             CCCCccceeeee-----cccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEE
Confidence            7531  1 1211     1133 33444  999999 8999999999999999998643 3454

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.1e-33  Score=292.74  Aligned_cols=289  Identities=11%  Similarity=0.061  Sum_probs=215.9

Q ss_pred             eEecCCCCEEEEEeCCC-------cEEEEeccCcCCCc-----ceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----
Q 006126          268 STSLPDADSAVCAKSLE-------KSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----  331 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg-------~i~iwd~~~~~~~~-----~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----  331 (660)
                      ++|+|||++|++|+.+.       .|++|++.......     ....+.|..  |.+.|.+++++  ++.+++|..    
T Consensus        20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~--~~~~v~s~~~~--~~~~~~g~~~~~~   95 (365)
T 4h5i_A           20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED--NDDSPTAIDAS--KGIILVGCNENST   95 (365)
T ss_dssp             EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT--TSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred             EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC--CCCceEEEEeC--CCEEEEEECCCcc
Confidence            39999999999998653       59999987532221     112234543  78888887664  567777654    


Q ss_pred             -------CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEE
Q 006126          332 -------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISI  399 (660)
Q Consensus       332 -------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~i  399 (660)
                             |+.+++|++........         .+..     ........+...+.+++|+  |+++++++   |++|++
T Consensus        96 ~l~s~~~d~~~r~~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i  161 (365)
T 4h5i_A           96 KITQGKGNKHLRKFKYDKVNDQLE---------FLTS-----VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI  161 (365)
T ss_dssp             HHHHTSCCCCEEEEEEETTTTEEE---------EEEE-----ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred             EEEEecCCCcEEEEEecCCCceEE---------Eeee-----eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence                   55667776654432111         1110     0001111456779999999  78776544   799999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEeC
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGA  476 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s~  476 (660)
                      ||+.+++++..+. |...|.+++|+||| ++++++.+ .+.+|+..+++.+.  ...+|...|.+++|+|+++++++++.
T Consensus       162 wd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~  239 (365)
T 4h5i_A          162 IDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL  239 (365)
T ss_dssp             EETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred             eECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence            9999999998886 66789999999999 88888855 55666666666553  34568889999999999999999998


Q ss_pred             CC----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 006126          477 DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL  551 (660)
Q Consensus       477 dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  551 (660)
                      |+    .+++||+..+..... ... ...+|.   ..|++++|+|||++|++ +.|++|+|||+++++++.++.. .|..
T Consensus       240 d~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~~  313 (365)
T 4h5i_A          240 KKGKGIVLTKISIKSGNTSVL-RSK-QVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHSF  313 (365)
T ss_dssp             SSSCCEEEEEEEEETTEEEEE-EEE-EEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSSS
T ss_pred             CCcceeEEeecccccceecce-eee-eecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-cccC
Confidence            87    688899887543211 112 345666   68999999999999999 5899999999999999888743 4799


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      .|++++|+|||++|++|+.|++|+|||+...
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999999653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.1e-33  Score=285.21  Aligned_cols=279  Identities=13%  Similarity=0.118  Sum_probs=230.8

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +|.+.|.+++|+|++++|++++.||.|++|++........                 ... ..  +|...|.+++|+  +
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-----------------~~~-~~--~~~~~v~~~~~~~~~   68 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-----------------LLQ-SL--RYKHPLLCCNFIDNT   68 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-----------------EEE-EE--ECSSCEEEEEEEESS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-----------------cee-ee--ecCCceEEEEECCCC
Confidence            4999999999999999999999999999999876642000                 111 11  588999999999  8


Q ss_pred             C-EEEEEe-CCcEEEEEC-CCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC---------CceeeE
Q 006126          387 S-HLFSAS-GGKISIFSL-ETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAK  451 (660)
Q Consensus       387 ~-~l~s~~-dg~I~iwd~-~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~---------~~~~~~  451 (660)
                      . +|++++ ||.|++||+ .+++. ..+..  |...|.+++|+| + .+++++.|+.|++||+++         ++++..
T Consensus        69 ~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           69 DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence            8 899999 999999999 87765 66778  999999999999 8 999999999999999988         777777


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-EecC
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEG  528 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~  528 (660)
                      +. |...|.+++|+|++  +++++.|+.|++||+++ +...    .......|.   ..+.+++|+| +++++++ +.||
T Consensus       147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLK---YQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC----CEEEECSCS---SCEEEEEECSGGGCEEEEEETTS
T ss_pred             Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc----ceeeecCCC---CceeEEEECCCCCCEEEEEecCC
Confidence            76 88999999999987  99999999999999987 4321    111233444   6899999999 9999999 5899


Q ss_pred             cEEEEeCCCC------ceeeeecCCC-------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126          529 QIDVYEAPTL------NHTSQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ  595 (660)
Q Consensus       529 ~i~iwd~~~~------~~~~~~~~~~-------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~  595 (660)
                      .|++||+...      +....+..+.       |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.      
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------  290 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------  290 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------
T ss_pred             cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh------
Confidence            9999999876      6666665531       23499999999999999999999999999999999888765      


Q ss_pred             CCCcCcccceEEEEEecCCCCEEEEEeCCCe-EEEEe
Q 006126          596 PGTISLELYPLVIAAHPLEPNRIALGLTNGR-VHVIE  631 (660)
Q Consensus       596 ~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~-v~iw~  631 (660)
                       +|+...+.  +++  | ++.+|++++.||+ .+.|.
T Consensus       291 -~~h~~~v~--~~~--~-~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          291 -KFNEDSVV--KIA--C-SDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             -CCSSSEEE--EEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred             -cccCCCce--Eec--C-CCCeEEEEecCCccccccc
Confidence             44344455  777  8 8999999999998 55544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-32  Score=293.82  Aligned_cols=280  Identities=15%  Similarity=0.180  Sum_probs=227.0

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL  389 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l  389 (660)
                      |...|.+++|  +|+++++|+.||.|++||..+++.                     .....  +|...|.+++|.+++|
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------~~~~~--~h~~~v~~l~~~~~~l  186 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------KRILT--GHTGSVLCLQYDERVI  186 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------EEEEC--CCSSCEEEEECCSSEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------EEEEc--CCCCcEEEEEECCCEE
Confidence            6788998877  899999999999999999876543                     11111  7999999999998999


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee---eEeeccCCCeEEEEEe
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYS  465 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~---~~~~~~~~~v~~l~~s  465 (660)
                      ++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.++...   ..+.+|...|.++.| 
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            9999 999999999999999999999999999999743 9999999999999999988765   677889999999999 


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~  544 (660)
                       +++++++|+.||.|++||+++++.     +. ...+|.   ..|.++.++  +.++++ +.|+.|++||+++++++..+
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~~~-----~~-~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTCEF-----VR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCE-----EE-EEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             -CCCEEEEEeCCCeEEEEECCcCcE-----EE-EEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence             688999999999999999998643     33 345666   689999885  678888 58999999999999999888


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe---------eEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEP  615 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~---------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~  615 (660)
                      ..  |...|.+++|  ++++|++|+.||.|++||+.+++         .+..+.       +| ...+.  +++|   ++
T Consensus       333 ~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~l~~---~~  395 (435)
T 1p22_A          333 EG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EH-SGRVF--RLQF---DE  395 (435)
T ss_dssp             CC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-------CC-SSCCC--CEEE---CS
T ss_pred             eC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-------CC-CCCeE--EEEe---CC
Confidence            65  6889999998  78999999999999999997765         555554       44 44555  7888   46


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          616 NRIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       616 ~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                      .+|++++.||+|++||+.++.......++.
T Consensus       396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  425 (435)
T 1p22_A          396 FQIVSSSHDDTILIWDFLNDPAAQAEPPRS  425 (435)
T ss_dssp             SCEEECCSSSEEEEEC--------------
T ss_pred             CEEEEEeCCCEEEEEECCCCCCcccCCCCC
Confidence            789999999999999998877654444433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-31  Score=286.60  Aligned_cols=278  Identities=19%  Similarity=0.216  Sum_probs=234.9

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL  389 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l  389 (660)
                      |.+.|.. +++++|++|++|+.||.|++||+.+++.                     +..+.  +|...|.+++|+++++
T Consensus       117 h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~l  172 (445)
T 2ovr_B          117 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------LRTLV--GHTGGVWSSQMRDNII  172 (445)
T ss_dssp             STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE---------------------EEECC--CCSSCEEEEEEETTEE
T ss_pred             cCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE---------------------EEEEc--CCCCCEEEEEecCCEE
Confidence            7877643 3566799999999999999999876653                     11111  7999999999998899


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL  468 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  468 (660)
                      ++|+ ||.|++||+.+++.+..+.+|...|.++.|+++ .+++|+.|+.|++||+.+++.+..+.+|...|.++.|  ++
T Consensus       173 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             EEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence            9999 999999999999999999999999999999533 8999999999999999999999999999999999999  78


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC
Q 006126          469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD  547 (660)
Q Consensus       469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~  547 (660)
                      +++++++.||.|++||+++++.     +. ...+|.   ..|.++.|  ++.++++ +.|+.|++||+++++.+..+.. 
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~-----~~-~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-  317 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETC-----LH-TLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG-  317 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEE-----EE-EECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred             CEEEEEcCCCEEEEEECCCCcE-----eE-EecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-
Confidence            8999999999999999998543     33 344666   68999999  7888888 5899999999999999888865 


Q ss_pred             CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeE
Q 006126          548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV  627 (660)
Q Consensus       548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v  627 (660)
                       |...+.++.+  +++++++|+.||.|++||+.+++.+..+..+.    +| ...+  .+++|+   ++++++|+.||.|
T Consensus       318 -~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~-~~~v--~~~~~~---~~~l~s~~~dg~v  384 (445)
T 2ovr_B          318 -HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN----KH-QSAV--TCLQFN---KNFVITSSDDGTV  384 (445)
T ss_dssp             -CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTT----SC-SSCE--EEEEEC---SSEEEEEETTSEE
T ss_pred             -CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCC----CC-CCCE--EEEEEC---CCEEEEEeCCCeE
Confidence             5788887776  57799999999999999999999888876321    12 3334  488885   4799999999999


Q ss_pred             EEEeCCCCceec
Q 006126          628 HVIEPLESEVEW  639 (660)
Q Consensus       628 ~iw~~~~~~~~w  639 (660)
                      ++||+.+++...
T Consensus       385 ~iwd~~~~~~~~  396 (445)
T 2ovr_B          385 KLWDLKTGEFIR  396 (445)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEECCCCceee
Confidence            999999987643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.5e-33  Score=286.34  Aligned_cols=256  Identities=11%  Similarity=0.108  Sum_probs=202.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeCCC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCT  445 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~~~  445 (660)
                      +|...|++++|+  +++|++|+ |++|++||+.++.  .+..+.+|...|.+++|+|  ++ .|++|+.|++|++||+++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            799999999999  89999999 9999999998875  4677889999999999986  37 999999999999999998


Q ss_pred             Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---
Q 006126          446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---  518 (660)
Q Consensus       446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---  518 (660)
                      ++  ....+.+|...|.+++|+|+  +.+|++++.|++|++||++.+..   ........+|.   ..|.+++|+|+   
T Consensus        91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHT---IGCNAVSWAPAVVP  164 (316)
T ss_dssp             SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSS---SCBCCCEECCCCCC
T ss_pred             CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeecccc---CCcceEEEccccCC
Confidence            73  56678889999999999997  78999999999999999987421   11112345676   68999999997   


Q ss_pred             --------------CcEEEE-EecCcEEEEeCCCC---ceeeeecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEE
Q 006126          519 --------------QIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKV  576 (660)
Q Consensus       519 --------------~~~l~~-~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~dg----~~l~sg~~dg~I~i  576 (660)
                                    +++|++ +.|+.|++||++..   +++..+.  .|...|.+++|+|++    ++|++|+.||.|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                          367887 58999999999755   3455554  478999999999987    89999999999999


Q ss_pred             EECCCCe----eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCccccc
Q 006126          577 FDTSTLE----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSRE  649 (660)
Q Consensus       577 wd~~~~~----~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~~~~  649 (660)
                      |++.+..    ....+.       +| ...++  +++|+| ++++||+++.||+|+||+.... ..|......+.++
T Consensus       243 w~~~~~~~~~~~~~~~~-------~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~~-g~~~~~~~~~~~~  307 (316)
T 3bg1_A          243 WTCDDASSNTWSPKLLH-------KF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESVD-GQWVCISDVNKGQ  307 (316)
T ss_dssp             EECSSTTCCCCBCCEEE-------EC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECTT-SCEEEEEECC---
T ss_pred             EEccCccccchhhhhhh-------cC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECCC-CcEEEeeeccCCC
Confidence            9997631    111222       23 34455  999999 8999999999999999998643 3454443333333

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=290.58  Aligned_cols=292  Identities=10%  Similarity=0.059  Sum_probs=221.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++|||||+++|+++.|++|+  |...    ..  .  +.  +|...|++++|+|+|       .++.+.+|+.+...   
T Consensus        21 v~~SpDG~~iASas~D~TV~--d~~~----~~--~--l~--gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---   78 (588)
T 2j04_A           21 LTWARDGTLYLTTFPDISIG--QPKY----AK--D--IN--CNSKNLFHVKEFPLE-------FENKLDFELAQQNG---   78 (588)
T ss_dssp             EEECTTSCEEEECSSSEEEE--EECC----CS--C--CS--SBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred             EEECCCCCEEEEEcCCceee--cccc----cc--e--ec--CCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence            39999999999999999999  6442    22  2  22  499999999999999       45665555432221   


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC-----CeE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP-----IAT  419 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~-----~v~  419 (660)
                                        ...  .  .|...|.+++|+  |.+||+++ ||.|++||.+.  ++..+. |..     .+.
T Consensus        79 ------------------~~~--~--~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~  133 (588)
T 2j04_A           79 ------------------LLN--S--QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYH  133 (588)
T ss_dssp             ------------------SST--T--SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEE
T ss_pred             ------------------Eee--c--CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEE
Confidence                              111  1  468889999999  89999999 99999999654  666666 554     599


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEeCCCCce-------eeEe----eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126          420 YFILLPQD-LFAFGFDDSSILVHCPCTKKT-------KAKL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-------~~~~----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~  487 (660)
                      +++||||| .|++|+.||+|++||+.++..       +.++    .+|...|.+++|+|+|  +++++.|++|++||+.+
T Consensus       134 svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          134 CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence            99999999 999999999999999998853       5666    5678899999999999  88899999999999988


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE--ccCCCEE
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCDGKCI  565 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~dg~~l  565 (660)
                      +...  ...+++..+|.   ..|.+++|+  |..++++.+++|++||+.+++......  +|...|..++|  +||+..+
T Consensus       212 ~~~~--~~~~tL~~~h~---~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~L  282 (588)
T 2j04_A          212 SSHQ--PVSRMIQNASR---RKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTIL  282 (588)
T ss_dssp             SSSC--CCEEEEECCCS---SCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEE
T ss_pred             Cccc--cceeeeccccc---CcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEE
Confidence            5421  11222334666   689999999  688888778999999998777633332  37999999999  9999999


Q ss_pred             EEEecCCeEEEEECCCCeeEEEeeccc------------ccCCCC----cCcccceEEEEEecCCCCEEEEEeC
Q 006126          566 YVSCKSGHVKVFDTSTLELRCQINLTA------------YAQPGT----ISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       566 ~sg~~dg~I~iwd~~~~~~~~~~~~~~------------~~~~gh----~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                      +++++||. ++|..+.   +. +.+..            +...|.    -.+...+.+++|+| ||+.+|+++.
T Consensus       283 a~a~edG~-klw~~d~---~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SP-dG~~lA~~~~  350 (588)
T 2j04_A          283 LMSNKTSY-KVLLEDE---LH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSP-DGYSIAIVYD  350 (588)
T ss_dssp             EECSSCEE-EEEESSS---EE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECT-TSSEEEEEEE
T ss_pred             EEEcCCCC-EEEeecc---EE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECC-CCCEEEEEEe
Confidence            99999999 9999862   11 21110            001010    01122245999999 8999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-32  Score=280.09  Aligned_cols=243  Identities=15%  Similarity=0.169  Sum_probs=198.4

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|.+++|+|+|++|++|+.|++|+|||+.++...                   .+..+  .+|...|.+++|+   
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-------------------~~~~l--~gH~~~V~~v~~~~~~   69 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-------------------LIADL--RGHEGPVWQVAWAHPM   69 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-------------------EEEEE--ECCSSCEEEEEECCGG
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-------------------EEEEE--cCCCccEEEEEeCCCC
Confidence            49999999999999999999999999999998765320                   11111  1799999999996   


Q ss_pred             -CCEEEEEe-CCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCce---eeEeecc
Q 006126          386 -GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT---KAKLKGH  455 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~---~~~~~~~  455 (660)
                       +++|++|+ |++|++||+.++  .....+.+|...|.+++|+|+  + .|++|+.|+.|++||++++..   ...+.+|
T Consensus        70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence             67999999 999999999987  466778899999999999998  7 999999999999999987632   3556779


Q ss_pred             CCCeEEEEEeCC-----------------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126          456 QNRITCLAYSLS-----------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  518 (660)
Q Consensus       456 ~~~v~~l~~sp~-----------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  518 (660)
                      ...|.++.|+|+                 +++|++|+.|++|++||++....  ...+. .+.+|.   ..|.+++|+|+
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~l~~h~---~~V~~v~~sp~  223 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQ-KLEAHS---DWVRDVAWAPS  223 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEE-CCBCCS---SCEEEEECCCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceee-ecccCC---CceEEEEecCC
Confidence            999999999997                 47899999999999999975321  01233 456787   68999999998


Q ss_pred             C----cEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          519 Q----IHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       519 ~----~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      +    .+|++ +.|++|++||+.+..    ....+.  .|...|.+++|+|+|++|++|+.||.|+||+..
T Consensus       224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            6    78888 589999999997631    112232  368899999999999999999999999999976

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.8e-32  Score=286.02  Aligned_cols=289  Identities=12%  Similarity=0.078  Sum_probs=230.8

Q ss_pred             eEecCCCCEEE-EEeCCCcEEEEeccCcCCC-cceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCc
Q 006126          268 STSLPDADSAV-CAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNK  344 (660)
Q Consensus       268 ~~~spdg~~l~-s~~~dg~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~  344 (660)
                      +.++|+...++ +++.||.|+||++...... .....  +  .+|.+.|.+++|+| ++++|++|+.||.|++|++..+.
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~--~--~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL--V--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCC--B--CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCce--E--ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            47788776544 5788999999998641110 11111  3  34999999999999 99999999999999999988764


Q ss_pred             eeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C-CEEEEEe-CCcEEEEECCCCeEEEEE--cCCCCCe
Q 006126          345 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPPIA  418 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~-~~l~s~~-dg~I~iwd~~~~~~~~~~--~~~~~~v  418 (660)
                      ....              ....+..+.  +|...|.+++|+  + .+|++++ ||.|++||+.+++.+..+  ..|...|
T Consensus       116 ~~~~--------------~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          116 LVLP--------------LREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             CSSC--------------BCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             Cccc--------------cCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            2100              001111111  799999999999  4 6899999 999999999999999999  7899999


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe-eccCCC-eEEEEEeCCCCEEEEE---eCCCcEEEEEcCCCeeee
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~~~-v~~l~~sp~~~~l~s~---s~dg~i~vwd~~~~~~~~  492 (660)
                      .+++|+|++ .|++++.|+.|++||+++++.+..+ .+|.+. +.++.|+|+++++++|   +.|+.|++||++++..  
T Consensus       180 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--  257 (402)
T 2aq5_A          180 YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--  257 (402)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS--
T ss_pred             EEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC--
Confidence            999999999 9999999999999999999999888 678776 8999999999999999   7899999999988542  


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                        ++......+.   ..+.+++|+|+++++++ + .|+.|++||+.+++. +..+....|...|.+++|+|++.++++  
T Consensus       258 --~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--  330 (402)
T 2aq5_A          258 --PLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--  330 (402)
T ss_dssp             --CSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--
T ss_pred             --CceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--
Confidence              1221222344   57999999999999976 6 699999999998874 445444345789999999999998875  


Q ss_pred             cCCeEEEEECCCCeeE
Q 006126          570 KSGHVKVFDTSTLELR  585 (660)
Q Consensus       570 ~dg~I~iwd~~~~~~~  585 (660)
                      .++.+++|++.+++..
T Consensus       331 ~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          331 KCEIARFYKLHERKCE  346 (402)
T ss_dssp             GTEEEEEEEEETTEEE
T ss_pred             cceeEEEEEcCCCcEE
Confidence            5679999999987654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-31  Score=285.72  Aligned_cols=269  Identities=17%  Similarity=0.254  Sum_probs=221.2

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .+++|++++++|+.||.|++||..+    +..... +.  +|...|.+++|  ++++|++|+.||.|++||+.+++.   
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~----~~~~~~-~~--~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~---  205 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNT----LECKRI-LT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM---  205 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSS----CCEEEE-EC--CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE---
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCC----CeEEEE-Ec--CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE---
Confidence            5667999999999999999999974    443332 43  38999999999  789999999999999999876653   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEE---EEEcCCCCCeEEEEEc
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTL---ATFANPPPIATYFILL  424 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~---~~~~~~~~~v~~v~~s  424 (660)
                                        +....  +|...|.+++|+++.+++|+ ||.|++||+.++...   ..+.+|...|.+++| 
T Consensus       206 ------------------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          206 ------------------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             ------------------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             ------------------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence                              11111  68999999999988999999 999999999987655   667799999999999 


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                       ++ .+++|+.||.|++||+++++.+..+.+|...|.++.|+  +.++++|+.||.|++||+++++.     +. ...+|
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~-----~~-~~~~h  335 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC-----LR-VLEGH  335 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-----EE-EECCC
T ss_pred             -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCE-----EE-EEeCC
Confidence             66 99999999999999999999999999999999999994  68999999999999999998543     33 34567


Q ss_pred             CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc---------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126          504 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH  573 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~  573 (660)
                      .   ..|.+++|  ++.++++ +.||.|++||+.++.         ++..+..  |...|.+++|  ++++|++|+.||.
T Consensus       336 ~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          336 E---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             S---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             c---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC--CCCCeEEEEe--CCCEEEEEeCCCE
Confidence            6   68999998  6888888 589999999997665         6666654  6889999999  7889999999999


Q ss_pred             EEEEECCCCeeEEEe
Q 006126          574 VKVFDTSTLELRCQI  588 (660)
Q Consensus       574 I~iwd~~~~~~~~~~  588 (660)
                      |++||+.++......
T Consensus       407 i~iwd~~~~~~~~~~  421 (435)
T 1p22_A          407 ILIWDFLNDPAAQAE  421 (435)
T ss_dssp             EEEEC----------
T ss_pred             EEEEECCCCCCcccC
Confidence            999999887655443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=287.94  Aligned_cols=302  Identities=11%  Similarity=0.080  Sum_probs=220.7

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCC-----Ccce-eeeecCCCCCC------------CCeEEEEEecCC--CEE
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSEC-RTLLLPDNSFG------------GRVVRLIYSHSG--DFL  326 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~-----~~~~-~~~~l~~~~h~------------~~V~~~~~spdg--~~l  326 (660)
                      .+.|+|+|++||+|+.||.|+|||+.....     .... ....+.  +|.            ..|.+++|+|++  .+|
T Consensus        33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l  110 (447)
T 3dw8_B           33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--SHEPEFDYLKSLEIEEKINKIRWLPQKNAAQF  110 (447)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--CCCCEEEGGGTEEECCCCCEEEECCCCSSSEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--cccccccccccccccCceEEEEEcCCCCcceE
Confidence            359999999999999999999999985321     0111 112243  377            889999999998  899


Q ss_pred             EEEECCCcEEEEeccCCceeeeeec---c----------------ceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          327 VALTQTATHKLWKWQSNKQSLEEEN---V----------------NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       327 ~s~s~dg~i~vw~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      ++++.||.|++|++...........   .                .....-|.... .... .+..+|...|.+++|+  
T Consensus       111 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~~~  188 (447)
T 3dw8_B          111 LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPRR-IFANAHTYHINSISINSD  188 (447)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEEE-EECSCCSSCCCEEEECTT
T ss_pred             EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cceE-EeccCCCcceEEEEEcCC
Confidence            9999999999999876543211000   0                00000000000 0011 1123799999999999  


Q ss_pred             CCEEEEEeCCcEEEEECCC-CeEEEE-------EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce----eeE
Q 006126          386 GSHLFSASGGKISIFSLET-FQTLAT-------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT----KAK  451 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~-~~~~~~-------~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~----~~~  451 (660)
                      +++|++|.|+.|++||+.+ ++....       +.+|...|.+++|+|++  .|++|+.|+.|++||+++++.    +..
T Consensus       189 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  268 (447)
T 3dw8_B          189 YETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL  268 (447)
T ss_dssp             SSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred             CCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence            8899988799999999984 444442       45889999999999997  999999999999999999887    788


Q ss_pred             eeccCC------------CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCC----------
Q 006126          452 LKGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT----------  508 (660)
Q Consensus       452 ~~~~~~------------~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~----------  508 (660)
                      +.+|..            .|.+++|+|+|++|++++. +.|++||+++ ++.     +. ...+|.....          
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~-----~~-~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP-----VE-TYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-----SC-CEESCGGGTTTHHHHHHTSG
T ss_pred             eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-----cc-eeeccccccccccccccccc
Confidence            888876            8999999999999999998 9999999987 432     22 2333331000          


Q ss_pred             --CeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec------------------------------CCCCCCCeEE
Q 006126          509 --IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV------------------------------PDKMDLPITY  555 (660)
Q Consensus       509 --~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~v~~  555 (660)
                        .+..++|+|++++|+++ .|+.|++||+.+++.+....                              ...+...|..
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  421 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH  421 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence              13349999999999985 89999999999887653110                              0023567899


Q ss_pred             EEEccCCCEEEEEecCCeEEEEECC
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      ++|+|++++||+++.++ +++|..+
T Consensus       422 ~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          422 TAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             EEECSSSSEEEEECSSC-EEEEECC
T ss_pred             EEECCCCCEEEEEecce-eeeeccc
Confidence            99999999999998876 8888754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.7e-31  Score=275.23  Aligned_cols=276  Identities=12%  Similarity=0.026  Sum_probs=223.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEEec-cCCce
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW-QSNKQ  345 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~-~~~~~  345 (660)
                      +.|+|++++|++++.||.|++|++.............    +|...|.+++|+|+++ +|++++.||.|++|++ .++..
T Consensus        17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~   92 (342)
T 1yfq_A           17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee----ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence            4999999999999999999999998522111133321    3899999999999999 9999999999999998 66542


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCC--CCCCeEEEEEe-CCEEEEEe-CCcEEEEECCC---------CeEEEEEc
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET---------FQTLATFA  412 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~---------~~~~~~~~  412 (660)
                                 ..+             .+  |...|.+++|+ +++|++++ |+.|++||+.+         ++++..+.
T Consensus        93 -----------~~~-------------~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           93 -----------QAL-------------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             -----------EEC-------------BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             -----------Eec-------------cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence                       111             15  99999999999 99999999 99999999987         76666665


Q ss_pred             CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC-Cce--eeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 006126          413 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKT--KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGW  488 (660)
Q Consensus       413 ~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~-~~~--~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~  488 (660)
                       |...+.+++|+|++ +++++.|+.|++||+++ +..  ......|...|.+++|+| +++++++++.||.|++||++..
T Consensus       149 -~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          149 -VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             -SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             -eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence             88899999999987 99999999999999998 543  334456888999999999 9999999999999999999874


Q ss_pred             --eeeeceeeeeeeeccCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126          489 --KKLCSKFLHSFQTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS  559 (660)
Q Consensus       489 --~~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  559 (660)
                        ... ..... ...+|..      ....|.+++|+|++++|++ +.||.|++||+.+++.+..+..+ |...|.+++  
T Consensus       227 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~--  301 (342)
T 1yfq_A          227 GDDYN-SSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA--  301 (342)
T ss_dssp             CCSTT-CTTCE-EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEE--
T ss_pred             Ccccc-cccce-eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cCCCceEec--
Confidence              100 01122 2333320      0148999999999999998 58999999999999998887642 288999999  


Q ss_pred             cCCCEEEEEecCCe-EEEEE
Q 006126          560 CDGKCIYVSCKSGH-VKVFD  578 (660)
Q Consensus       560 ~dg~~l~sg~~dg~-I~iwd  578 (660)
                      |++++|++|+.||. .+.|.
T Consensus       302 ~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          302 CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ECSSEEEEEEECTHHHHCSS
T ss_pred             CCCCeEEEEecCCccccccc
Confidence            99999999999998 55554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-31  Score=275.10  Aligned_cols=248  Identities=15%  Similarity=0.173  Sum_probs=208.2

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|.+++|+|+|++|++++.||.|++|++.....                   ..+..+  .+|...|++++|+   
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~--~~h~~~v~~~~~~~~~   67 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK   67 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------EEEEEE--CCCSSCEEEEEECCGG
T ss_pred             CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------eeeeEe--cCCCCcEEEEEeCCCC
Confidence            3999999999999999999999999999999864322                   111111  1699999999997   


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCc--eeeEeeccC
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ  456 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~  456 (660)
                       +.+|++++ ||.|++||+.+++  ....+..|...|.+++|+|+  + .|++++.|+.|++||+.++.  ....+.+|.
T Consensus        68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence             68999999 9999999999987  77778889999999999999  8 99999999999999999873  345667899


Q ss_pred             CCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---Cc
Q 006126          457 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI  520 (660)
Q Consensus       457 ~~v~~l~~sp-------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~  520 (660)
                      ..|.+++|+|             ++.++++++.||.|++||++++.... .... ...+|.   ..|.+++|+|+   +.
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~h~---~~v~~~~~sp~~~~~~  222 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS  222 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEE-EEeccc---CcEeEEEECCCCCCCC
Confidence            9999999999             69999999999999999998754321 1222 455677   68999999999   89


Q ss_pred             EEEE-EecCcEEEEeCCCCc---eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          521 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       521 ~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      +|++ +.|+.|++||++++.   ....+....|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus       223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            9998 589999999998864   2233333346889999999999999999999999999999854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4e-31  Score=274.88  Aligned_cols=280  Identities=13%  Similarity=0.103  Sum_probs=223.7

Q ss_pred             CCCCCeEEEEEecC---CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe
Q 006126          309 SFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR  385 (660)
Q Consensus       309 ~h~~~V~~~~~spd---g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  385 (660)
                      +|.+.|.+++|+|+   |++|++|+.||.|++|++.+....                   ......  +|...|.+++|+
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------~~~~~~--~h~~~v~~~~~~   95 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------IPKAQQ--MHTGPVLDVCWS   95 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------EEEEEE--ECSSCEEEEEEC
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------eEEEec--cccCCEEEEEEC
Confidence            49999999999999   699999999999999998763221                   101111  699999999999


Q ss_pred             --CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE--cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          386 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL--LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       386 --~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~--sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                        +++|++++ ||.|++||+.+++... +..|...|.+++|  +|++ .|++++.|+.|++||+++++.+..+..+. .+
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~  173 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC  173 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred             cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence              88999999 9999999999998776 4578999999999  8999 99999999999999999999998888664 56


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE----EEE-EecCcEEEEe
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS-IHEGQIDVYE  534 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~-~~d~~i~iwd  534 (660)
                      .++.+.+  ..+++++.++.+.+||++.....    .......+.   ..+.++.+.++...    +++ +.|+.|++||
T Consensus       174 ~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          174 YCADVIY--PMAVVATAERGLIVYQLENQPSE----FRRIESPLK---HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             EEEEEET--TEEEEEEGGGCEEEEECSSSCEE----EEECCCSCS---SCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             eEEEecC--CeeEEEeCCCcEEEEEeccccch----hhhcccccc---CCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence            6666664  58888999999999999885422    111112222   45667777665543    666 6999999999


Q ss_pred             CCCC---ceeeeecCCCCCC------------CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126          535 APTL---NHTSQLVPDKMDL------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI  599 (660)
Q Consensus       535 ~~~~---~~~~~~~~~~~~~------------~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~  599 (660)
                      ++..   ..+..+..  |..            .|++++|+|++++|++|+.||.|++||+.+++.+..+.       +| 
T Consensus       245 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~-  314 (368)
T 3mmy_A          245 INPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-------QL-  314 (368)
T ss_dssp             SSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------CC-
T ss_pred             cCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-------CC-
Confidence            9877   44555544  232            79999999999999999999999999999999888776       33 


Q ss_pred             CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ...+.  +++|+| ++.+|++++.|+..+.|++.
T Consensus       315 ~~~v~--~~~~s~-~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          315 DQPIS--ACCFNH-NGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             SSCEE--EEEECT-TSSCEEEEECCCSTTCGGGC
T ss_pred             CCCce--EEEECC-CCCeEEEEeccccccccccc
Confidence            44455  999999 89999999999866655543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.8e-31  Score=269.65  Aligned_cols=253  Identities=13%  Similarity=0.142  Sum_probs=210.8

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|.+++|+|+|++|++++.||.|++|++.++....                 .......  +|...|.+++|+   
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~~--~~~~~v~~~~~~~~~   69 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-----------------ELSDSWR--AHDSSIVAIDWASPE   69 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-----------------EEEEEEE--CCSSCEEEEEECCGG
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-----------------eecceec--cCCCcEEEEEEcCCC
Confidence            499999999999999999999999999999987653210                 0111111  699999999998   


Q ss_pred             -CCEEEEEe-CCcEEEEECCCC---------eEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCceeeE
Q 006126          386 -GSHLFSAS-GGKISIFSLETF---------QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAK  451 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~---------~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~~~~  451 (660)
                       +.+|++++ ||.|++||+.++         +....+..|...|.+++|+|+  + .+++++.|+.|++||+++++.+..
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence             57999999 999999999887         667888899999999999999  8 999999999999999998876544


Q ss_pred             ee-------------ccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126          452 LK-------------GHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  515 (660)
Q Consensus       452 ~~-------------~~~~~v~~l~~sp~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  515 (660)
                      +.             .|...+.++.|+|+   +..+++++.|+.+.+|+...+...   .+. ...+|.   ..|.+++|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-~~~~h~---~~i~~~~~  222 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH---VAA-KLPGHK---SLIRSISW  222 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE---EEE-ECCCCC---SCEEEEEE
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee---eee-ecCCCC---cceeEEEE
Confidence            43             57889999999997   999999999999988888775421   222 345676   69999999


Q ss_pred             ecCC----cEEEE-EecCcEEEEeCCCC----------------------------------------------ceeeee
Q 006126          516 HPDQ----IHLLS-IHEGQIDVYEAPTL----------------------------------------------NHTSQL  544 (660)
Q Consensus       516 sp~~----~~l~~-~~d~~i~iwd~~~~----------------------------------------------~~~~~~  544 (660)
                      +|++    .+|++ +.|+.|++||++++                                              +.+..+
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence            9998    78888 58999999999764                                              344444


Q ss_pred             cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      .  .|...|++++|+|++++|++|+.||.|+||++.+++....+.
T Consensus       303 ~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          303 D--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             C--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             e--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence            3  368899999999999999999999999999999887665543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.4e-31  Score=269.78  Aligned_cols=250  Identities=14%  Similarity=0.129  Sum_probs=206.7

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCP  443 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~  443 (660)
                      +|...|++++|+  +.+|++++ ||.|++||+.++    +....+.+|...|.+++|+|  ++ +|++|+.|+.|++||+
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~   88 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE   88 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence            799999999999  88999999 999999999876    46777889999999999999  58 9999999999999999


Q ss_pred             CCC---------ceeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------eeeccCC
Q 006126          444 CTK---------KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------FQTGLVP  505 (660)
Q Consensus       444 ~~~---------~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~  505 (660)
                      +++         +.+..+.+|...|.+++|+|+  +.++++++.||.|++||+++++.........       ...+|. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (351)
T 3f3f_A           89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL-  167 (351)
T ss_dssp             CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS-
T ss_pred             CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc-
Confidence            887         557788899999999999999  9999999999999999999865433222110       112344 


Q ss_pred             CCCCeEEEEEecC---CcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEEE
Q 006126          506 ETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVF  577 (660)
Q Consensus       506 ~~~~v~~~~~sp~---~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~sg~~dg~I~iw  577 (660)
                        ..+.+++|+|+   +.++++ +.++.+.+|+...++.........|...|++++|+|++    ++|++|+.||.|++|
T Consensus       168 --~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw  245 (351)
T 3f3f_A          168 --QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF  245 (351)
T ss_dssp             --CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred             --cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence              68999999997   888888 58888988888777653333333478999999999998    899999999999999


Q ss_pred             ECCCC----------------------------------------------eeEEEeecccccCCCCcCcccceEEEEEe
Q 006126          578 DTSTL----------------------------------------------ELRCQINLTAYAQPGTISLELYPLVIAAH  611 (660)
Q Consensus       578 d~~~~----------------------------------------------~~~~~~~~~~~~~~gh~~~~v~~~~v~~s  611 (660)
                      |+.++                                              +.+..+.       +| ...+.  +++|+
T Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~s  315 (351)
T 3f3f_A          246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DH-NGEVW--SVSWN  315 (351)
T ss_dssp             EEEECC---------------------------------------CCSEEEEEEEEEC-------TT-SSCEE--EEEEC
T ss_pred             eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-------cc-cccEE--EEEEc
Confidence            99875                                              2222222       44 34444  99999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          612 PLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       612 p~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      | ++++|++++.||.|+||++.+++.
T Consensus       316 ~-~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          316 L-TGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             S-SSCCEEEEETTSCEEEEEECTTSC
T ss_pred             C-CCCEEEEecCCCcEEEEecCcCcc
Confidence            9 899999999999999999988753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.1e-31  Score=281.76  Aligned_cols=288  Identities=11%  Similarity=0.026  Sum_probs=229.9

Q ss_pred             CCeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CC
Q 006126          312 GRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS  387 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~  387 (660)
                      .....++++|+...++ +++.||.|+||++.......                 ..+..  ..+|...|.+++|+   ++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----------------~~~~~--~~~h~~~V~~~~~~p~~~~   95 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-----------------KNVPL--VCGHTAPVLDIAWCPHNDN   95 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-----------------TTCCC--BCCCSSCEEEEEECTTCTT
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-----------------CCCce--EecCCCCEEEEEeCCCCCC
Confidence            3445688998876444 57889999999986543200                 01111  12799999999998   67


Q ss_pred             EEEEEe-CCcEEEEECCCC-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe--ecc
Q 006126          388 HLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGH  455 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~--~~~  455 (660)
                      +|++|+ ||.|++||+.++       +.+..+.+|...|.+++|+|++  .|++|+.|+.|++||+++++.+..+  .+|
T Consensus        96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A           96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence            999999 999999999987       6678889999999999999997  8999999999999999999999999  789


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE----ecCcEE
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQID  531 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~d~~i~  531 (660)
                      ...|.+++|+|++++|++++.||.|++||+++++.     +..+..+|..  ..+.+++|+|++.+++++    .|+.|+
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA  248 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence            99999999999999999999999999999998653     3322245552  348999999999999987    689999


Q ss_pred             EEeCCCCce-eeeecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceEEE
Q 006126          532 VYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVI  608 (660)
Q Consensus       532 iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~s-g~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v  608 (660)
                      +||+++++. +..... .+...+.+++|+|++++|++ |+.||.|++||+.+++. +..+..+     .| ...+.  ++
T Consensus       249 iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~-----~~-~~~v~--~~  319 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF-----SS-KESQR--GM  319 (402)
T ss_dssp             EEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-----CC-SSCCS--EE
T ss_pred             EEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-----cc-CCccc--ce
Confidence            999988765 333322 35778999999999999975 55799999999999874 4444422     11 34455  99


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          609 AAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +|+| ++.++++  .|+.+++|++.+++.
T Consensus       320 ~~sp-~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          320 GYMP-KRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EEec-cccccee--cceeEEEEEcCCCcE
Confidence            9999 7887765  577999999988754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-32  Score=296.59  Aligned_cols=279  Identities=12%  Similarity=0.047  Sum_probs=208.1

Q ss_pred             eeeEecCC------CCEEEEEeCCCcEEEEeccCcCCCc-ce-----eeeecCCCCCCCCeEEEEEecCCCEEEEEECCC
Q 006126          266 RESTSLPD------ADSAVCAKSLEKSVNLKLQLINEPS-EC-----RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA  333 (660)
Q Consensus       266 ~~~~~spd------g~~l~s~~~dg~i~iwd~~~~~~~~-~~-----~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg  333 (660)
                      ..+.|+|+      +.+||+++.||+|++||+....... ..     ....+.  +|...|.+++|+|++ .|++|+.||
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~--~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS--LADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC--CTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE--cCCCCEEEEEecCCC-eEEEEeCCC
Confidence            34688886      6799999999999999997532110 00     011233  489999999999865 799999999


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE--EEe--C-CEEEEEe-CCcEEEEECCCCeE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQT  407 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~s--~-~~l~s~~-dg~I~iwd~~~~~~  407 (660)
                      +|++||+.++..                    .....  .+|...|.++  +|+  + .+|++++ |++|++||+.++++
T Consensus       288 tV~lWD~~~~~~--------------------~~~~~--~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          288 FVAEFDLTDPEV--------------------PSFYD--QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEEEEETTBCSS--------------------CSEEE--ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             EEEEEECCCCCC--------------------ceEEe--ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            999999875432                    00000  1699999999  456  5 6899999 99999999999887


Q ss_pred             EEEEcCCCC--CeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126          408 LATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD  484 (660)
Q Consensus       408 ~~~~~~~~~--~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd  484 (660)
                      ...+.+|..  .|.+++|+|++ .+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            777766653  57899999999 999999999999999999998889999999999999999999999999999999999


Q ss_pred             cCCCeeeeceeeeeee---eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC-CCceeeeecCCCCCCCeEEEEEcc
Q 006126          485 AVGWKKLCSKFLHSFQ---TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       485 ~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                      +...      .+....   ..+..  ..+.+++|+|++..+....  .+.+|+.. ++.++.++.+  |...|.+++|+|
T Consensus       426 ~~~~------~~~~~~~~~~~~~~--~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp  493 (524)
T 2j04_B          426 AARR------LLHGIKNSSATQKS--LRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKIDA--HGINITCTKWNE  493 (524)
T ss_dssp             SCSS------TTTCC------CCC--CEEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECC
T ss_pred             chHh------hccccccCccceee--eEEEEeccCCCCCeEEccC--CceecccccCCcceeeecC--CCceEEEEECCC
Confidence            8662      122100   01110  2477999999998553322  23344432 4566666654  689999999999


Q ss_pred             CCC---EEEEEecCCeEEEEECCC
Q 006126          561 DGK---CIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       561 dg~---~l~sg~~dg~I~iwd~~~  581 (660)
                      ++.   ++++|+.||.|+||++.-
T Consensus       494 ~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          494 TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCccHHHHhhccCceEEEEEccc
Confidence            964   999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.5e-30  Score=288.82  Aligned_cols=291  Identities=12%  Similarity=0.108  Sum_probs=241.1

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCC-eEEEEEe--
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR--  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~s--  385 (660)
                      .|.+.|.+++|+|+|++|++++ ++.|.+|++.++....                 .....+  .+|... |.+++|+  
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~-----------------~~~~~~--~~h~~~~v~~~~~sp~   75 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV-----------------PPVVQF--TGHGSSVVTTVKFSPI   75 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS-----------------CSEEEE--CTTTTSCEEEEEECSS
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc-----------------ccceEE--ecCCCceEEEEEECcC
Confidence            4899999999999999999998 7899999987551000                 111111  179999 9999998  


Q ss_pred             --CCEEEEEe-CCcEEEEECCCC--------eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC----CeEEEEeCCCCcee
Q 006126          386 --GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTK  449 (660)
Q Consensus       386 --~~~l~s~~-dg~I~iwd~~~~--------~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~  449 (660)
                        +++|++++ ||.|++||+.++        +....+..|...|.+++|+|++ .+++++.+    +.|++||  .++.+
T Consensus        76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~  153 (615)
T 1pgu_A           76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL  153 (615)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred             CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence              47999999 999999999755        6777888999999999999999 99999987    6899998  56788


Q ss_pred             eEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC---CeEEEEEecC-CcEEEE
Q 006126          450 AKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT---IVNHIQFHPD-QIHLLS  524 (660)
Q Consensus       450 ~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l~~  524 (660)
                      ..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.     +. ...+|.   .   .|.+++|+|+ ++++++
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-----~~-~~~~~~---~~~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-----SA-SDRTHH---KQGSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-----EE-EECSSS---CTTCCEEEEEECSTTCCEEEE
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-----ee-eecccC---CCCceEEEEEECCCCCCEEEE
Confidence            89999999999999999998 899999999999999988543     23 344565   5   7999999999 999998


Q ss_pred             -EecCcEEEEeCCCCceeeeecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126          525 -IHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL  601 (660)
Q Consensus       525 -~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~  601 (660)
                       +.|+.|++||+++++.+..+...  .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+.      ...
T Consensus       225 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------~~~  297 (615)
T 1pgu_A          225 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQL  297 (615)
T ss_dssp             EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCG
T ss_pred             EeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC------Ccc
Confidence             58999999999999998887321  368999999999 99999999999999999999999888876431      011


Q ss_pred             ccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126          602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW  639 (660)
Q Consensus       602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w  639 (660)
                      ...+.++.|.  ++.++++++.||.|++||+.+++...
T Consensus       298 ~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~  333 (615)
T 1pgu_A          298 GNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLK  333 (615)
T ss_dssp             GGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred             cCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEE
Confidence            2234477774  68899999999999999999876543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-31  Score=273.87  Aligned_cols=247  Identities=12%  Similarity=0.066  Sum_probs=206.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT  445 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~  445 (660)
                      +|...|++++|+  +++|++++ ||.|++||+.  +++....+.+|...|++++|+|+  + .|++|+.|+.|++||+.+
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred             CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence            799999999999  88999999 9999999998  66778889999999999999987  7 999999999999999999


Q ss_pred             Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec----
Q 006126          446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----  517 (660)
Q Consensus       446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----  517 (660)
                      ++  .+..+..|...|.+++|+|+  +.++++++.|+.|++||++++....   .. ...+|.   ..|.+++|+|    
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~-~~~~~~---~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE  161 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC---EE-EEECCT---TCEEEEEECCCC--
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee---eE-EecCCC---CceEEEEEcCcccc
Confidence            87  67788889999999999999  9999999999999999999854221   11 344566   6899999999    


Q ss_pred             ---------CCcEEEE-EecCcEEEEeCCCCce----eeeecCCCCCCCeEEEEEccC---CCEEEEEecCCeEEEEECC
Q 006126          518 ---------DQIHLLS-IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       518 ---------~~~~l~~-~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~d---g~~l~sg~~dg~I~iwd~~  580 (660)
                               ++.++++ +.|+.|++||++++..    ...+.  .|...|.+++|+|+   +++|++++.||.|++||+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                     6899998 5899999999987653    33443  47899999999999   8999999999999999999


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ++.........  ...+| ...  +.+++|+| ++.+|++++.||.|++|++..+
T Consensus       240 ~~~~~~~~~~~--~~~~~-~~~--v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          240 NEQGPWKKTLL--KEEKF-PDV--LWRASWSL-SGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             STTSCCEEEES--SSSCC-SSC--EEEEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCccceeeee--ccccC-CCc--EEEEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence            87422111110  01122 333  44999999 8999999999999999999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=2e-29  Score=269.09  Aligned_cols=280  Identities=16%  Similarity=0.120  Sum_probs=227.0

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ...+.+++|+|++.++++++.++.|++||..+++....            ...+.      ..+|...|.+++|+  +.+
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~------~~~~~~~v~~~~~~~~~~~  183 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------SPPEK------YKKKLGFVETISIPEHNEL  183 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------CCCHH------HHTTCCEEEEEEEGGGTEE
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------cCccc------ccccCCceeEEEEcCCCEE
Confidence            45577999999777778888889999999877654110            00000      01688899999998  777


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                      +++++ |+.|++||+.+++.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+++++.+..+..+ ..+.+++|+
T Consensus       184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  262 (433)
T 3bws_A          184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS  262 (433)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc
Confidence            88888 8999999999999999999999999999999999 66 55668999999999999888887754 459999999


Q ss_pred             CCCCEEEEEe--------CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeC
Q 006126          466 LSLNVLVSSG--------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA  535 (660)
Q Consensus       466 p~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~  535 (660)
                      |+|+++++++        .|+.|++||+++++.....       .+.   ..+.+++|+|+++.+++ + .++.|++||+
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------GPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-------EEE---ECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-------cCC---CCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            9999999888        5889999999986543221       222   46889999999987655 4 7899999999


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec---------------CCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK---------------SGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      .+++.+..+.   +...+.+++|+|+|+++++++.               ||.|++||+.+++.+..+..         .
T Consensus       333 ~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~  400 (433)
T 3bws_A          333 KEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------G  400 (433)
T ss_dssp             TTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------S
T ss_pred             CCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------C
Confidence            9998887774   3677999999999999998876               57999999999998887753         2


Q ss_pred             cccceEEEEEecCCCCEEEEEeC-CCeEEEEeCCC
Q 006126          601 LELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE  634 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~s~s~-Dg~v~iw~~~~  634 (660)
                      ..  +.+++|+| ++++|++++. |++|++|++..
T Consensus       401 ~~--~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          401 NQ--PTGLDVSP-DNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SS--EEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred             CC--CceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence            22  44999999 8999988775 99999999863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.6e-30  Score=275.74  Aligned_cols=301  Identities=13%  Similarity=0.068  Sum_probs=229.0

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC--------------c-----------
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK--------------L-----------  365 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-----------  365 (660)
                      ..++.+++|+|+|++|+++ .++.|.+||+.+++....       +..|.....              .           
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEF-------AGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK   75 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEE-------EEEEECCC---------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCccee-------eeecCCccccccccccccchhhccccccccccccc
Confidence            4578999999999966655 578999999988872110       011110000              0           


Q ss_pred             ----------------eeeecccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEEEECC--CCeEEEEEc--CCCCCeEEE
Q 006126          366 ----------------VMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLE--TFQTLATFA--NPPPIATYF  421 (660)
Q Consensus       366 ----------------~~~~~~~~~h~~~v~~v~~s--~~~l-~s~~-dg~I~iwd~~--~~~~~~~~~--~~~~~v~~v  421 (660)
                                      ........+|...|.+++|+  +.+| ++++ ||.|++||+.  +++.+..+.  .+...|.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred             cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence                            00000001466789999999  7785 7887 9999999999  888888876  667899999


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCceee----EeeccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCS  493 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~----~~~~~~~~v~~l~~sp~---~~~l~s~s~dg~i~vwd~~~~~~~~~  493 (660)
                      +|+|++ .|++|+.|+.|++|++.+++...    .+.+|...|++++|+|+   +++|++++.|+.|++||++++.    
T Consensus       156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~----  231 (450)
T 2vdu_B          156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF----  231 (450)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----
T ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----
Confidence            999999 99999999999999998877554    77889999999999999   9999999999999999999854    


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-----------------------CC
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------------------KM  549 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------------------~~  549 (660)
                       .+.....+|.   ..|.+++|+ ++++|++ +.|+.|++||+++++++..+...                       ..
T Consensus       232 -~~~~~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          232 -IVDKWLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             -CEEEECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             -eeeeeecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence             3332355777   689999999 9999999 58999999999999988777531                       12


Q ss_pred             CCCeEEEEEccCCCEEEEEe-cCCeEEEEEC--CCC---eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          550 DLPITYATYSCDGKCIYVSC-KSGHVKVFDT--STL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       550 ~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~--~~~---~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                      ...|.+++|+|++++|++++ .|+.|+||++  .++   +.+..+.       +|  ..  +.+++|+| ++.++++++.
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-------~~--~~--v~~~~~~~-~~~~v~~~~~  374 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-------FP--YN--VISLSAHN-DEFQVTLDNK  374 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-------CS--SC--EEEEEEET-TEEEEEECCT
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-------cC--Cc--eEEEEecC-CcEEEEEecc
Confidence            46799999999999999999 8999999999  555   5555554       22  23  45999999 5544444333


Q ss_pred             ------CCeEEEEeCCCCceecc
Q 006126          624 ------NGRVHVIEPLESEVEWG  640 (660)
Q Consensus       624 ------Dg~v~iw~~~~~~~~w~  640 (660)
                            +..|.+|.+.....+|.
T Consensus       375 ~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          375 ESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             TCCSSCCCSEEEEEEETTTTEEE
T ss_pred             cCCCCCCcceEEEEEEcCCCeEE
Confidence                  45689998765544453

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=3.4e-30  Score=267.89  Aligned_cols=292  Identities=11%  Similarity=0.124  Sum_probs=225.4

Q ss_pred             CCccccccCCCC-CCceeecCCCCceeeEecCC---CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEE
Q 006126          242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL  317 (660)
Q Consensus       242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spd---g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~  317 (660)
                      ..++..+.+|.. |..+           .|+|+   |++|++|+.||.|++||+..   .+......+..  |...|.++
T Consensus        29 ~~~~~~~~~h~~~v~~~-----------~~~~~~~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~--h~~~v~~~   92 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCL-----------SFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPKAQQM--HTGPVLDV   92 (368)
T ss_dssp             TCCEECSSCCSSCEEEE-----------EECCTTSSSEEEEEEETTSEEEEEEECT---TSCEEEEEEEE--CSSCEEEE
T ss_pred             cceeEeccCCCCceEEE-----------EEcCCCCCceEEEEECCCCcEEEEEcCC---CCceeEEEecc--ccCCEEEE
Confidence            445666777766 5554           99999   69999999999999999984   13333223433  89999999


Q ss_pred             EEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE--e--CCEEEEEe
Q 006126          318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSAS  393 (660)
Q Consensus       318 ~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s--~~~l~s~~  393 (660)
                      +|+|++++|++++.||.|++||+.++..                     +...   +|...|.+++|  +  +.+|++++
T Consensus        93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~---------------------~~~~---~~~~~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           93 CWSDDGSKVFTASCDKTAKMWDLSSNQA---------------------IQIA---QHDAPVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEEE---ECSSCEEEEEEEECSSCEEEEEEE
T ss_pred             EECcCCCEEEEEcCCCcEEEEEcCCCCc---------------------eeec---cccCceEEEEEEeCCCCCEEEEcc
Confidence            9999999999999999999999876653                     1111   58999999999  6  67899999


Q ss_pred             -CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe--eccCCCeEEEEEeCCCCE
Q 006126          394 -GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       394 -dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~  470 (660)
                       ||.|++||+.+++.+..+..+. .+.++.+.++ .+++++.++.+++|+++........  ..+...+.++.+.+++..
T Consensus       149 ~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (368)
T 3mmy_A          149 WDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN  226 (368)
T ss_dssp             TTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred             CCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC
Confidence             9999999999999988888665 5556666544 7888899999999999876543322  224556677777665554


Q ss_pred             ----EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC---------CCCeEEEEEecCCcEEEE-EecCcEEEEeCC
Q 006126          471 ----LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE---------TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP  536 (660)
Q Consensus       471 ----l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~  536 (660)
                          +++++.||.|++||++.....  ..+. ...+|...         ...|.+++|+|++++|++ +.||.|++||+.
T Consensus       227 ~~~~~~~~~~dg~i~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          227 KPTGFALGSIEGRVAIHYINPPNPA--KDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             CEEEEEEEETTSEEEEEESSCSCHH--HHSE-EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCCeEEEecCCCcEEEEecCCCCcc--ccce-eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence                999999999999999885320  1112 22333300         026999999999999999 589999999999


Q ss_pred             CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126          537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      +++++..+..  |...|.+++|+|+|++|++|+.|+..+.|++.
T Consensus       304 ~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          304 ARTKLKTSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             TTEEEEECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             CCcEEEEecC--CCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            9999888864  68999999999999999999998765555443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.9e-31  Score=279.07  Aligned_cols=265  Identities=13%  Similarity=0.116  Sum_probs=206.8

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH  388 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~  388 (660)
                      -...|.+++|||||+++|+++.|++|+  |.+...                     .+     .+|...|++++|+ .. 
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---------------------~l-----~gh~~~v~~V~FsPdg-   64 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---------------------DI-----NCNSKNLFHVKEFPLE-   64 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---------------------CC-----SSBGGGTEEEEEECCC-
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccc---------------------ee-----cCCCccEEEEEECCCC-
Confidence            478999999999999999999999998  532221                     22     1799999999998 22 


Q ss_pred             EEEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC-----CeEE
Q 006126          389 LFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-----RITC  461 (660)
Q Consensus       389 l~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-----~v~~  461 (660)
                             .+..|++.+++....+. .|...|.+++|+|+| .|++++.||.|++||..+  ++..+. |..     .|.+
T Consensus        65 -------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s  134 (588)
T 2j04_A           65 -------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC  134 (588)
T ss_dssp             -------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred             -------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence                   44455555444333333 557889999999999 999999999999999543  666667 665     4999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec--eeeeee---eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF---QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  536 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~  536 (660)
                      ++|||||++|++|+.||+|++||+.++.....  ..+.++   ..+|.   ..|.+++|+||| .++++.|++|++||+.
T Consensus       135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg-Laass~D~tVrlWd~~  210 (588)
T 2j04_A          135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV-LVAALSNNSVFSMTVS  210 (588)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence            99999999999999999999999998532000  122322   35676   699999999999 5455799999999998


Q ss_pred             CCcee---eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE--e
Q 006126          537 TLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA--H  611 (660)
Q Consensus       537 ~~~~~---~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~--s  611 (660)
                      .+...   +++.. .|...|.+++|+  |+.||+++ ++.|++||+.+++......       || ...++  .++|  +
T Consensus       211 ~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-------gh-~~~V~--~va~~~s  276 (588)
T 2j04_A          211 ASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-------GS-LENFH--IIPLNHE  276 (588)
T ss_dssp             SSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------SC-CSCCC--EEEETTC
T ss_pred             CCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------CC-CceEE--EEEeeeC
Confidence            77732   34533 367899999999  68999997 6999999999987643322       44 55566  8999  9


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCC
Q 006126          612 PLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       612 p~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      | |+..+++++.||+ ++|...
T Consensus       277 ~-d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          277 K-ESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             S-SCEEEEECSSCEE-EEEESS
T ss_pred             C-CCCEEEEEcCCCC-EEEeec
Confidence            9 8999999999999 999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=5.3e-30  Score=266.12  Aligned_cols=285  Identities=10%  Similarity=0.021  Sum_probs=211.0

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |.+.|.+++|+|||++|++|+.++ +++|+..+......                         .+...+..+++.  ++
T Consensus        18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~   71 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-------------------------QEMRHLSKVRMLHRTN   71 (355)
T ss_dssp             -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-------------------------EECSCCCEEEECTTSS
T ss_pred             CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-------------------------eecCCeEEEEEcCCCC
Confidence            899999999999999999888775 77998765543110                         011235566666  66


Q ss_pred             EEE-EEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEE
Q 006126          388 HLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       388 ~l~-s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~  464 (660)
                      .++ +++ |++|++||+.+++++..+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+..   ....+++
T Consensus        72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~  145 (355)
T 3vu4_A           72 YVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF  145 (355)
T ss_dssp             EEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred             EEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence            664 455 7899999999999999886 56689999999886 2223 3789999999988 77766654   4445667


Q ss_pred             eCCCCEEEE--EeCCCcEEEEEcCCCeeee----------cee-eeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc-
Q 006126          465 SLSLNVLVS--SGADAQLCVWDAVGWKKLC----------SKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ-  529 (660)
Q Consensus       465 sp~~~~l~s--~s~dg~i~vwd~~~~~~~~----------~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~-  529 (660)
                      ++  .++++  |+.||.|++||++++....          ..+ +. ...+|.   ..|.+++|+|+|++|++ +.|++ 
T Consensus       146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHT---NPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             ET--TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCS---SCEEEEEECTTSSEEEEEETTCSE
T ss_pred             Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccC---CceEEEEECCCCCEEEEEeCCCCE
Confidence            77  56666  5789999999999753110          011 33 566887   79999999999999999 58998 


Q ss_pred             EEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc-----c-----------
Q 006126          530 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA-----Y-----------  593 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~-----------  593 (660)
                      |++||+++++++..+....|...|.+++|+|+|++|++|+.|+.|+|||+..+.....-....     +           
T Consensus       220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK  299 (355)
T ss_dssp             EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred             EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence            999999999999998743378999999999999999999999999999998653221111000     0           


Q ss_pred             cCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          594 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       594 ~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .+.++ ....  ..++|+| |++++++++.||.+++|++..++
T Consensus       300 ~~~~~-~~~~--~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          300 LSVDK-HVRG--CKIAWIS-ESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCCCT-TCCC--CEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred             eccCC-CCCc--eEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence            00110 1112  3789999 89999999999999999987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-30  Score=265.72  Aligned_cols=281  Identities=9%  Similarity=0.016  Sum_probs=213.5

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .+.+|+.++++|+.||+|++||+.++   .....+      ....|.++.|+|+   +++++.|+++++|+..       
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~---~~~~~~------~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~-------  103 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDS---KTITTI------TTPNPRTGGEHPA---IISRGPCNRLLLLYPG-------  103 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSS---SCEEEE------EEECCCTTCCCCS---EEEECSTTEEEEEETT-------
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCC---cEEEEE------ecCCceeeeeCCc---eEEecCCCeEEEEEcc-------
Confidence            55678899999999999999999852   222222      1456778888888   8999999999999753       


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcC--
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLP--  425 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp--  425 (660)
                                                                    +.+.+|++.+++.++.+. .|...|.+++|+|  
T Consensus       104 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  137 (343)
T 3lrv_A          104 ----------------------------------------------NQITILDSKTNKVLREIEVDSANEIIYMYGHNEV  137 (343)
T ss_dssp             ----------------------------------------------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC--
T ss_pred             ----------------------------------------------CceEEeecCCcceeEEeecCCCCCEEEEEcCCCC
Confidence                                                          234467777777666555 6778899999999  


Q ss_pred             CC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      ++ ++++|+.|+.|++||+++++....... |...|.+++|+|+|.+|++|+.||.|++||+++++..    ...+..+|
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~h  213 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA----SSRFPVDE  213 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC----CEECCCCT
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC----ccEEeccC
Confidence            99 999999999999999999988776644 5668999999999999999999999999999986432    02122237


Q ss_pred             CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-CCCCCe--EEEEEccCCCEEEEEec-CCeEEEEEC
Q 006126          504 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPI--TYATYSCDGKCIYVSCK-SGHVKVFDT  579 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v--~~~~~s~dg~~l~sg~~-dg~I~iwd~  579 (660)
                      .   +.|.+++|+|+|.+|+++.++.|++||+++++.+..+... .|...+  .+++|+|+|++|++++. |+.|+||++
T Consensus       214 ~---~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          214 E---AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             T---SCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             C---CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            7   7999999999999999976779999999998876555421 122333  46999999999999998 999999999


Q ss_pred             CCCeeEEEeecccccCCCCcCcccceEEEEEec--CCCCEEEEEeCCCeEEEEeCCCC
Q 006126          580 STLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp--~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      .+........            ++  ..+.|+|  .+...+++++.||.++++-....
T Consensus       291 ~~~~~~~~~~------------~~--~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          291 DKKTKNWTKD------------EE--SALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             CTTTCSEEEE------------EE--EECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             cccccceEec------------Cc--eeEecCccccccceeEEEecCCceEEEEecCC
Confidence            7665433321            12  2556665  24668888888998888765443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.9e-28  Score=257.75  Aligned_cols=316  Identities=11%  Similarity=0.079  Sum_probs=235.6

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEE-EEEECCCcEEEEeccCCceeeeeeccc
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      ..+++++.|+.|++||+.+    +++... +.   +...+.+++|+|+|+++ ++++.|+.|++||..+++.        
T Consensus         3 ~l~vs~~~d~~v~v~d~~~----~~~~~~-~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--------   66 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS----NKVTAT-IP---VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--------   66 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT----TEEEEE-EE---CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--------
T ss_pred             EEEEEcCCCCEEEEEECCC----CeEEEE-ee---cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--------
Confidence            4678889999999999984    444332 32   34569999999999987 5666899999998776643        


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L  428 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~  428 (660)
                                   +...   .+...+.+++|+  +++|+.++  ++.|++||+.+++.+..+..+ ..+.+++|+|++ .
T Consensus        67 -------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~  129 (391)
T 1l0q_A           67 -------------IATV---PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK  129 (391)
T ss_dssp             -------------EEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred             -------------EEEE---ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCE
Confidence                         1111   133389999999  77776555  699999999999998887754 468999999999 5


Q ss_pred             E-EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126          429 F-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       429 l-~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                      + ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+++++....      .. +.  
T Consensus       130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------~~-~~--  199 (391)
T 1l0q_A          130 LYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------VK-VE--  199 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------EE-CS--
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------Ee-cC--
Confidence            5 78888999999999999988888765 457999999999987 5677889999999998653321      11 22  


Q ss_pred             CCCeEEEEEecCCcEEEEE----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE-EEEecCCeEEEEECCC
Q 006126          507 TTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTST  581 (660)
Q Consensus       507 ~~~v~~~~~sp~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~sg~~dg~I~iwd~~~  581 (660)
                       ..+.+++|+|++++++++    .++.|++||+.+++.+..+..   ...+.+++|+|+|+++ ++++.|+.|++||+.+
T Consensus       200 -~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          200 -AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             -SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             -CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence             478999999999999884    478999999999998888765   3458899999999988 5668899999999999


Q ss_pred             CeeEEEeecccccCC-C------CcCcccceEEEEEecCC-----C--CEEEEEeCCCeEEEEeCCCCce
Q 006126          582 LELRCQINLTAYAQP-G------TISLELYPLVIAAHPLE-----P--NRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~-g------h~~~~v~~~~v~~sp~d-----~--~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ++.+..+..+..... |      +......+..+...+..     .  -.+...+.|.++++|++.++..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          276 NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence            999888764311100 0      00000111122222211     1  3466667789999999988764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.7e-29  Score=262.19  Aligned_cols=282  Identities=10%  Similarity=0.085  Sum_probs=207.6

Q ss_pred             ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126          244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS  322 (660)
Q Consensus       244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd  322 (660)
                      +++.+.+|.. |.++           .|+|||++|++|+.++ ++||+...    ...... .    +...+..+++.++
T Consensus        11 ~~~~~~~h~~~V~~v-----------~fs~dg~~la~g~~~~-~~iw~~~~----~~~~~~-~----~~~~~~~~~~~~~   69 (355)
T 3vu4_A           11 PIVPENHVSNPVTDY-----------EFNQDQSCLILSTLKS-FEIYNVHP----VAHIMS-Q----EMRHLSKVRMLHR   69 (355)
T ss_dssp             --------CCCCCEE-----------EECTTSSEEEEECSSE-EEEEEETT----EEEEEE-E----ECSCCCEEEECTT
T ss_pred             CccccccCCCceEEE-----------EECCCCCEEEEEcCCE-EEEEecCC----cceeee-e----ecCCeEEEEEcCC
Confidence            4444455555 5555           9999999999998776 78999873    333221 1    2335888999999


Q ss_pred             CCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEE
Q 006126          323 GDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFS  401 (660)
Q Consensus       323 g~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd  401 (660)
                      +++++ +++.|++|++||..+++.                     +...   .+...|.+++++.+.++++.++.|++||
T Consensus        70 ~~~~~~~~~~d~~v~iWd~~~~~~---------------------~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d  125 (355)
T 3vu4_A           70 TNYVAFVTGVKEVVHIWDDVKKQD---------------------VSRI---KVDAPVKDLFLSREFIVVSYGDVISVFK  125 (355)
T ss_dssp             SSEEEEECSSTTEEEEEETTTTEE---------------------EEEE---ECSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred             CCEEEEEECCccEEEEEECCCCcE---------------------EEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEE
Confidence            98884 566789999998776653                     2111   2566899999997777777899999999


Q ss_pred             CCCC-eEEEEEcCCCCCeEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCc----------------eeeEeeccCCCeEEE
Q 006126          402 LETF-QTLATFANPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCL  462 (660)
Q Consensus       402 ~~~~-~~~~~~~~~~~~v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~----------------~~~~~~~~~~~v~~l  462 (660)
                      +.++ +.+..+..   ....+++++ . ..++ |+.||.|++||+.++.                .+..+.+|...|+++
T Consensus       126 ~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~  201 (355)
T 3vu4_A          126 FGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV  201 (355)
T ss_dssp             SSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred             CCCCceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence            9988 66655544   444566777 5 3333 7899999999999865                267889999999999


Q ss_pred             EEeCCCCEEEEEeCCCc-EEEEEcCCCeeeeceeeeeeeec-cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126          463 AYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN  539 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~  539 (660)
                      +|+|+|++|++++.|++ |++||+++++.     +.++..+ |.   ..|.+++|+|+|++|++ +.|++|++||++.+.
T Consensus       202 ~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-----~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          202 RLNRKSDMVATCSQDGTIIRVFKTEDGVL-----VREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EECTTSSEEEEEETTCSEEEEEETTTCCE-----EEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCcE-----EEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            99999999999999998 99999998643     3323334 66   79999999999999999 589999999997653


Q ss_pred             eee--eec-------------------CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          540 HTS--QLV-------------------PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       540 ~~~--~~~-------------------~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      ...  .+.                   ..........++|++||++|++++.||.+++|++..+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          274 DNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             CcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            211  100                   0011233467999999999999999999999998654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.1e-29  Score=266.96  Aligned_cols=243  Identities=12%  Similarity=0.071  Sum_probs=192.8

Q ss_pred             CCCCeEEEEEecCCCEE-EEEECCCcEEEEecc--CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126          310 FGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-  385 (660)
                      |.+.|.+++|+|+|++| ++++.||.|++|++.  ++..                     +..+....|...|.+++|+ 
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------LKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------EEEEEEEECSSCEEEEEECT
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------eeeeecccCCCCceEEEEcC
Confidence            56689999999999996 888899999999987  4432                     1111001377889999999 


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCeEEE----EEcCCCCCeEEEEEcCC---C-eEEEEeCCCeEEEEeCCCCceeeE-eec
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKTKAK-LKG  454 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~~~~----~~~~~~~~v~~v~~sp~---~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~  454 (660)
                       +.+|++++ +|.|++|++.+++...    .+.+|...|.+++|+|+   + +|++|+.|+.|++||+.+++.+.. +.+
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence             88999999 8999999998877554    67789999999999999   8 999999999999999999988877 568


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-------------------eccCCCCCCeEEEEE
Q 006126          455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-------------------TGLVPETTIVNHIQF  515 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~v~~~~~  515 (660)
                      |...|.+++|+ ++++|++++.|+.|++||+++++...........                   ....   ..|.+++|
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~  315 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE---FAVSKIIK  315 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC---CCEEEEEE
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce---EEEEEEEE
Confidence            99999999999 9999999999999999999997654433221000                   0111   47899999


Q ss_pred             ecCCcEEEE-E-ecCcEEEEeC--CCC---ceeeeecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEECC
Q 006126          516 HPDQIHLLS-I-HEGQIDVYEA--PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTS  580 (660)
Q Consensus       516 sp~~~~l~~-~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~------dg~I~iwd~~  580 (660)
                      +|+++++++ + .++.|++||+  .++   ..+..+..  + ..|.+++|+|++.++++++.      +..|.+|.+.
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            999999998 4 6899999999  555   55666654  3 78999999996544444443      4557888654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=6.4e-29  Score=265.12  Aligned_cols=244  Identities=15%  Similarity=0.155  Sum_probs=201.1

Q ss_pred             CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCC----------CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCe
Q 006126          374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS  437 (660)
Q Consensus       374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~----------~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~  437 (660)
                      +|.+.|++++|+   +.+|++++ +|.|++||+.+          ......+.+|...|.+++|+|++  .|++|+.||.
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            699999999999   35788888 89999999986          67788888999999999999998  8999999999


Q ss_pred             EEEEeCCCCce-------eeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126          438 ILVHCPCTKKT-------KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI  509 (660)
Q Consensus       438 I~iwd~~~~~~-------~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  509 (660)
                      |++||+.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||++++..  ...+. ....|.   ..
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~---~~  279 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSH-TVDAHT---AE  279 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSE-EEECCS---SC
T ss_pred             EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--Cccee-EeecCC---CC
Confidence            99999987422       456678999999999999 788999999999999999998531  12233 334666   68


Q ss_pred             eEEEEEecCCc-EEEE-EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCC---
Q 006126          510 VNHIQFHPDQI-HLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL---  582 (660)
Q Consensus       510 v~~~~~sp~~~-~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~---  582 (660)
                      |++++|+|++. ++++ +.||.|++||+++ ..++..+..  |...|++++|+|+++ ++++++.||.|+|||+...   
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            99999999997 4666 5899999999998 456667654  689999999999995 7999999999999999872   


Q ss_pred             -----------eeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEeCCCeEEEEeCCCCc
Q 006126          583 -----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       583 -----------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s~Dg~v~iw~~~~~~  636 (660)
                                 +++..+.       || ...++  +++|+| ++. ++++++.||.|+||++....
T Consensus       358 ~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHG-------GH-TAKIS--DFSWNP-NEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             CCHHHHHHCCTTEEEECC-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECHHH
T ss_pred             cCccccccCCcceEEEcC-------CC-CCCce--EEEECC-CCCCEEEEEECCCCEEEeEccccc
Confidence                       3333332       44 33455  999999 677 99999999999999997653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.7e-28  Score=261.83  Aligned_cols=251  Identities=14%  Similarity=0.180  Sum_probs=201.7

Q ss_pred             CCCCeEEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~~V~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      |.+.|.+++|+|+ +.+|++++.||.|++|++........           ..........+.  +|...|.+++|+  +
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------~~~~~~~~~~~~--~h~~~v~~l~~~~~~  193 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------PSGECQPDLRLR--GHQKEGYGLSWNPNL  193 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------TTCCCCCSEEEE--CCSSCCCCEEECTTS
T ss_pred             CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------ccccCCCcEEec--CCCCCeEEEEeCCCC
Confidence            8999999999997 68999999999999999876321000           000011111111  699999999999  5


Q ss_pred             C-EEEEEe-CCcEEEEECCCCeE-------EEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCC---ceeeEe
Q 006126          387 S-HLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKL  452 (660)
Q Consensus       387 ~-~l~s~~-dg~I~iwd~~~~~~-------~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~---~~~~~~  452 (660)
                      . +|++|+ ||.|++||+.++..       ...+.+|...|.+++|+|+ + .|++++.|+.|++||++++   +.+..+
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~  273 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV  273 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence            5 899999 99999999987322       4567789999999999995 4 9999999999999999987   577788


Q ss_pred             eccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc-EEEE-EecCc
Q 006126          453 KGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ  529 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~-~~d~~  529 (660)
                      ..|...|++++|+|++. ++++|+.||.|++||+++..    .++. ...+|.   ..|.+++|+|+++ ++++ +.|+.
T Consensus       274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~-~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLH-SFESHK---DEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSE-EEECCS---SCEEEEEECSSCTTEEEEEETTSC
T ss_pred             ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeE-EeecCC---CCEEEEEECCCCCCEEEEEeCCCc
Confidence            88999999999999887 68899999999999999732    2333 445666   6899999999996 4666 58999


Q ss_pred             EEEEeCCCC--------------ceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCe
Q 006126          530 IDVYEAPTL--------------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       530 i~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~  583 (660)
                      |++||+...              ..+..+.  .|...|.+++|+|+++ ++++++.||.|+||++..+.
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            999999762              3444443  4688999999999999 89999999999999997643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.4e-29  Score=263.78  Aligned_cols=300  Identities=8%  Similarity=0.026  Sum_probs=197.1

Q ss_pred             CCCeEEEEE---ecCCCEEEEEECCCcEEEEeccCCceeee-----------eeccceeEEEecCCCCceeeecccCCCC
Q 006126          311 GGRVVRLIY---SHSGDFLVALTQTATHKLWKWQSNKQSLE-----------EENVNMESQLYQPSSKLVMTNDIAADPK  376 (660)
Q Consensus       311 ~~~V~~~~~---spdg~~l~s~s~dg~i~vw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~h~  376 (660)
                      .....++.|   +|++..+++++.|+.|.+|+.........           ..........|........     ..|.
T Consensus        15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   89 (393)
T 4gq1_A           15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE-----NLHD   89 (393)
T ss_dssp             TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC-----C---
T ss_pred             CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc-----cccC
Confidence            445666777   45555566666788999998654322111           1111112223332211111     1344


Q ss_pred             CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEE-----EEcCCCCCeEEEEEcC--------CC-eEEEEeCCCeEE
Q 006126          377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-----TFANPPPIATYFILLP--------QD-LFAFGFDDSSIL  439 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~-----~~~~~~~~v~~v~~sp--------~~-~l~s~~~d~~I~  439 (660)
                      ..+....+.  +.+|++++ |++|++||+.++....     .+.+|...|++++|+|        |+ +|++|+.|++|+
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~  169 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI  169 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence            444444455  67899999 9999999999886543     3568999999999998        77 999999999999


Q ss_pred             EEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeee-------------------ee
Q 006126          440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLH-------------------SF  499 (660)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------------~~  499 (660)
                      +||+.++..+..+.+|...|.+++|+|++. +|++++.|++|++||+++++........                   ..
T Consensus       170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence            999998888888888999999999999874 7999999999999999986532211000                   01


Q ss_pred             eeccCCCCCCeEEEEEe-cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe------------------EEEEEc
Q 006126          500 QTGLVPETTIVNHIQFH-PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI------------------TYATYS  559 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~s-p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v------------------~~~~~s  559 (660)
                      ..+|.   ..+.++.|+ |+++.+++ +.|+++++||+..++....+..  |...+                  ....|+
T Consensus       250 ~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          250 SSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             --CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             ccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEc
Confidence            13454   578899987 79999999 5899999999987765554432  12222                  223344


Q ss_pred             c--CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          560 C--DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       560 ~--dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      |  ++.++++|+.||.|++||+.+++....+.       +| ..+|.  +++||| ||++||++++|| +.+|++
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-------~~-~~~V~--svafsp-dG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-------QL-GMPIV--DFCWHQ-DGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-------EC-SSCEE--EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEEEEec-------CC-CCcEE--EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence            3  44577788899999999999998776655       23 34455  999999 899999998776 666654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-29  Score=287.69  Aligned_cols=248  Identities=13%  Similarity=0.077  Sum_probs=207.2

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCC
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT  445 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~  445 (660)
                      +|.+.|++++|+  +++|++|+ ||.|++||+.  +++....+.+|...|++++|+|+  + .|++|+.||.|++||+.+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            799999999999  88999999 9999999998  56778889999999999999988  8 999999999999999998


Q ss_pred             Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec----
Q 006126          446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----  517 (660)
Q Consensus       446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----  517 (660)
                      ++  .+..+.+|...|++++|+|+  ++.+++|+.||.|++||++++....   .. ...+|.   ..|.+++|+|    
T Consensus        87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~---~~-~~~~~~---~~v~~l~~~p~~~~  159 (753)
T 3jro_A           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE  159 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---CE-EEECCS---SCEEEEEECCCC--
T ss_pred             CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---ee-EeecCC---CceEEEEecCcccc
Confidence            86  67788889999999999999  9999999999999999999853221   11 344666   6899999999    


Q ss_pred             ---------CCcEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccC---CCEEEEEecCCeEEEEECC
Q 006126          518 ---------DQIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       518 ---------~~~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~d---g~~l~sg~~dg~I~iwd~~  580 (660)
                               ++.++++ +.||.|++||++++.    ....+.  .|...|++++|+|+   ++++++|+.||.|++||+.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                     5888888 589999999998773    344444  47899999999999   9999999999999999999


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      +++.......  ....+| ...+.  +++|+| ++.++++++.||.|++|++..+.
T Consensus       238 ~~~~~~~~~~--~~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          238 NEQGPWKKTL--LKEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSSCCBCCB--SSSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCCcceeEE--eccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence            8743221111  111122 44455  999999 89999999999999999998653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.9e-29  Score=284.70  Aligned_cols=248  Identities=15%  Similarity=0.171  Sum_probs=207.0

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|.+++|+|+|++|++|+.||.|+||++.++..                   ......  .+|...|++++|+   
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------~~~~~l--~~h~~~V~~l~~s~~~   65 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK   65 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-------------------EEEEEE--CCCSSCEEEEEECCTT
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-------------------ccceec--cCCcCceEEEEecCCC
Confidence            4999999999999999999999999999999864322                   111111  1799999999997   


Q ss_pred             -CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCc--eeeEeeccC
Q 006126          386 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ  456 (660)
Q Consensus       386 -~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~  456 (660)
                       +++|++|+ ||.|++||+.+++  ....+..|...|.+++|+|+  + .+++|+.||.|++||++++.  ....+.+|.
T Consensus        66 ~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~  145 (753)
T 3jro_A           66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (753)
T ss_dssp             SCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence             57999999 9999999999987  67778899999999999999  8 99999999999999998873  345667899


Q ss_pred             CCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---Cc
Q 006126          457 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI  520 (660)
Q Consensus       457 ~~v~~l~~sp-------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~  520 (660)
                      ..|.++.|+|             ++.++++|+.||.|++||++++.... .... ...+|.   ..|.+++|+|+   +.
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~~h~---~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred             CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeee-eecCCC---CcEEEEEeccCCCCCC
Confidence            9999999999             58999999999999999998864221 1222 455777   79999999999   89


Q ss_pred             EEEE-EecCcEEEEeCCCCcee---eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          521 HLLS-IHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       521 ~l~~-~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      ++++ +.||.|++||+.++...   .......|...|++++|+|+|+++++|+.||.|++|++.++
T Consensus       221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9998 58999999999886421   12222346889999999999999999999999999999853

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5.5e-27  Score=246.53  Aligned_cols=265  Identities=16%  Similarity=0.138  Sum_probs=212.6

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI  399 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l-~s~~-dg~I~i  399 (660)
                      ..+++++.|+.|++||+.+++.                     +...   .+...+.+++|+  ++++ ++++ |+.|++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~---------------------~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v   58 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV---------------------TATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSI   58 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE---------------------EEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeE---------------------EEEe---ecCCCcceEEECCCCCEEEEECCCCCeEEE
Confidence            3567888899999998876643                     1111   133458999999  7766 5665 899999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE-EEEeC
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGA  476 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~  476 (660)
                      ||+.+++.+..+..+. .+.+++|+|++ .+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.
T Consensus        59 ~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           59 IDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCC
Confidence            9999999998887665 89999999999 66 45557799999999999988887754 578999999999987 67888


Q ss_pred             CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126          477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT  554 (660)
Q Consensus       477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  554 (660)
                      |+.|++||+.+++..     . ....+    ..+.+++|+|+++++++ + .++.|++||+++++.+..+..   ...+.
T Consensus       137 ~~~v~~~d~~~~~~~-----~-~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~  203 (391)
T 1l0q_A          137 DKTVSVINTVTKAVI-----N-TVSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPS  203 (391)
T ss_dssp             TTEEEEEETTTTEEE-----E-EEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEE
T ss_pred             CCEEEEEECCCCcEE-----E-EEecC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCcc
Confidence            999999999986543     2 22223    36789999999998865 4 678999999999988777743   56789


Q ss_pred             EEEEccCCCEEEEEe---cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE-EEEeCCCeEEEE
Q 006126          555 YATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVI  630 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~---~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l-~s~s~Dg~v~iw  630 (660)
                      +++|+|+|+++++++   .++.|++||+.+++.+..+..+        . .  +.+++|+| +++++ ++++.|+.|++|
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~-~--~~~~~~s~-dg~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--------P-D--PAGIAVTP-DGKKVYVALSFXNTVSVI  271 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--------S-S--EEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--------C-C--ccEEEEcc-CCCEEEEEcCCCCEEEEE
Confidence            999999999999888   6899999999999888777632        2 2  34899999 78876 677899999999


Q ss_pred             eCCCCceec
Q 006126          631 EPLESEVEW  639 (660)
Q Consensus       631 ~~~~~~~~w  639 (660)
                      |+.+++...
T Consensus       272 d~~~~~~~~  280 (391)
T 1l0q_A          272 DTATNTITA  280 (391)
T ss_dssp             ETTTTEEEE
T ss_pred             ECCCCcEEE
Confidence            999887643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.3e-27  Score=251.79  Aligned_cols=274  Identities=13%  Similarity=0.058  Sum_probs=218.7

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC--CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP--DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN  343 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~--~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~  343 (660)
                      ..+.|+|++.++++++.++.|++||..+    +........  ..+|...|.+++|+|+|+++++++.|+.|++||+.++
T Consensus       126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             eEEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            3458999888888888999999999984    333332110  0248899999999999999999999999999998765


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE-EEe-CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIAT  419 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~-s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~  419 (660)
                      +.                     +....  .|...+.+++|+  +++++ +++ ++.|++||+.+++.+..+..+ ..+.
T Consensus       202 ~~---------------------~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~  257 (433)
T 3bws_A          202 AY---------------------KATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPR  257 (433)
T ss_dssp             CE---------------------EEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEE
T ss_pred             eE---------------------EEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCce
Confidence            43                     11111  578889999999  67764 554 899999999999988887654 4589


Q ss_pred             EEEEcCCC-eEEEEe--------CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCe
Q 006126          420 YFILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~--------~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~dg~i~vwd~~~~~  489 (660)
                      +++|+|++ .+++++        .|+.|++||+.+++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++
T Consensus       258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            99999999 888877        5889999999998877665 366689999999999755 566889999999999865


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e---------------cCcEEEEeCCCCceeeeecCCCCCCCe
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQLVPDKMDLPI  553 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~v  553 (660)
                      ....     +.  +.   ..+.+++|+|+|++++++ .               ||.|++||+.+++.+..+..   ...+
T Consensus       337 ~~~~-----~~--~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~  403 (433)
T 3bws_A          337 VQKS-----IP--VF---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQP  403 (433)
T ss_dssp             EEEE-----EE--CS---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSE
T ss_pred             EEEE-----ec--CC---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCC
Confidence            4321     21  22   578999999999988884 3               46999999999998888764   5678


Q ss_pred             EEEEEccCCCEEEEEec-CCeEEEEECCC
Q 006126          554 TYATYSCDGKCIYVSCK-SGHVKVFDTST  581 (660)
Q Consensus       554 ~~~~~s~dg~~l~sg~~-dg~I~iwd~~~  581 (660)
                      .+++|+|+|++|++++. |+.|++|++..
T Consensus       404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          404 TGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            99999999999998875 99999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=4.7e-27  Score=233.85  Aligned_cols=236  Identities=11%  Similarity=0.073  Sum_probs=177.2

Q ss_pred             eEEEEEe--CC---EEEEEeCCcEEEEECCCC---eEEEEEcCCCC-------------------------CeEEEEEcC
Q 006126          379 ISCFALR--GS---HLFSASGGKISIFSLETF---QTLATFANPPP-------------------------IATYFILLP  425 (660)
Q Consensus       379 v~~v~~s--~~---~l~s~~dg~I~iwd~~~~---~~~~~~~~~~~-------------------------~v~~v~~sp  425 (660)
                      +.++-|.  +.   .+++++...|++|+..++   +.+.++..|..                         .|++++++|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp  121 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS  121 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence            4555555  22   577888999999999998   78888776654                         456777788


Q ss_pred             C----C-eEEEEeC--------------------CCeEEEEeC-CCCceeeEeeccCCCeEEEEEeC---CCCEEEEEeC
Q 006126          426 Q----D-LFAFGFD--------------------DSSILVHCP-CTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGA  476 (660)
Q Consensus       426 ~----~-~l~s~~~--------------------d~~I~iwd~-~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~s~s~  476 (660)
                      |    + .+++++.                    |+.|++|++ .+|+.+..+.+|...++.++|+|   ++..|++++.
T Consensus       122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~  201 (356)
T 2w18_A          122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI  201 (356)
T ss_dssp             ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred             CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence            8    6 6666553                    888889998 44788888888888888889988   7799999999


Q ss_pred             CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE------------E-EecCcEEEEeCCCCceeee
Q 006126          477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL------------S-IHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~------------~-~~d~~i~iwd~~~~~~~~~  543 (660)
                      |++|++||+++++.+     +++ .+|......+.+++|+|+|.+++            + +.|++|++||..+++.+..
T Consensus       202 D~TIkIWDl~TGk~l-----~tL-~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v  275 (356)
T 2w18_A          202 MNNIVIWNLKTGQLL-----KKM-HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV  275 (356)
T ss_dssp             TSEEEEEETTTCCEE-----EEE-ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEECCCCcEE-----EEE-cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence            999999999997543     322 22221114678889999999874            3 3778999999999988766


Q ss_pred             ec---CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          544 LV---PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       544 ~~---~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      +.   +.+|...+.+..++  +.++++|+.|++|+|||+.+++.+..+.       ||++..+.  .++|+| ||++|++
T Consensus       276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaS  343 (356)
T 2w18_A          276 MLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLA  343 (356)
T ss_dssp             EEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEE
T ss_pred             EEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEE
Confidence            52   22355555544444  8899999999999999999999999886       45343333  689999 8999999


Q ss_pred             EeCCCeEEEEeC
Q 006126          621 GLTNGRVHVIEP  632 (660)
Q Consensus       621 ~s~Dg~v~iw~~  632 (660)
                      |+.|++|+|||+
T Consensus       344 GS~D~TIklWd~  355 (356)
T 2w18_A          344 GQKDGNIFVYHY  355 (356)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             EECCCcEEEecC
Confidence            999999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.1e-27  Score=235.10  Aligned_cols=272  Identities=11%  Similarity=0.030  Sum_probs=181.4

Q ss_pred             EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-C-CcEEEEeccCCceeeeeeccc
Q 006126          276 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-T-ATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       276 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-d-g~i~vw~~~~~~~~~~~~~~~  353 (660)
                      .+++++ ..+|++|+......-.......+    |..+|..++|.||-.-|++..- + ..-.++.              
T Consensus        56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s--------------  116 (356)
T 2w18_A           56 CIITAC-EDVVSLWKALDAWQWEKLYTWHF----AEVPVLQIVPVPDVYNLVCVALGNLEIREIRA--------------  116 (356)
T ss_dssp             EEEEEE-SSEEEEEEESSSSBEEEEEEEEC----CSSCEEEECCCTTCCSCEEEEECSSSEEEEEE--------------
T ss_pred             EEEEec-cceEEEcccCCCccceeeEEEec----cCceeEEEEEcCcccceeeeeeccccccceEE--------------
Confidence            344444 57899999986211123333332    7777777777776543333322 1 1111111              


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe---CCcEEEEEC-CCCeEEEEEcCCCCCeEEEEEcC---
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS---GGKISIFSL-ETFQTLATFANPPPIATYFILLP---  425 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~---dg~I~iwd~-~~~~~~~~~~~~~~~v~~v~~sp---  425 (660)
                         ..+.+.+....+.....+|...|..  +. ++.+.++.   |+.|++|++ .+|+.+..+..|...++.++|+|   
T Consensus       117 ---la~spd~~~~~~~l~s~g~~~~v~~--l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          117 ---LFCSSDDESEKQVLLKSGNIKAVLG--LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             ---ECC------CCEEEEEEEEEEEEEE--ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             ---EEECCCccccccEEEeCCCeEEEEe--cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence               1122221111111111123322322  23 44555543   899999999 55888888889999999999999   


Q ss_pred             CC-eEEEEeCCCeEEEEeCCCCceeeEeeccC---CCeEEEEEeCCCCEE------------EEEeCCCcEEEEEcCCCe
Q 006126          426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---NRITCLAYSLSLNVL------------VSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~l------------~s~s~dg~i~vwd~~~~~  489 (660)
                      ++ .|++|+.|++|+|||+.+|++++++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            66 99999999999999999999999998754   367788999999876            567889999999999976


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCC-eEEEEEccCCCEEEE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYV  567 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~s  567 (660)
                      .+....+. .+.+|.   ..+.+..+  ++..+++ +.|++|+|||+.+++++.++.+  |... +..++|+|||++|++
T Consensus       272 ~l~v~~~~-~p~Gh~---~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaS  343 (356)
T 2w18_A          272 SVGVMLYC-LPPGQA---GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLA  343 (356)
T ss_dssp             EEEEEEEC-CCTTCC---CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEE
T ss_pred             EEEEEEee-ccCCCc---ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEE
Confidence            55432222 235665   34444444  3778888 4899999999999999999975  4444 456899999999999


Q ss_pred             EecCCeEEEEEC
Q 006126          568 SCKSGHVKVFDT  579 (660)
Q Consensus       568 g~~dg~I~iwd~  579 (660)
                      |+.|++|+|||+
T Consensus       344 GS~D~TIklWd~  355 (356)
T 2w18_A          344 GQKDGNIFVYHY  355 (356)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             EECCCcEEEecC
Confidence            999999999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.5e-28  Score=249.70  Aligned_cols=236  Identities=12%  Similarity=0.092  Sum_probs=188.1

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCC---------CCceeeEee-c
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC---------TKKTKAKLK-G  454 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~---------~~~~~~~~~-~  454 (660)
                      +.++++|+ ||.|++||+.+++.+..+.  ...|.++.|+|+  +++++.|++|++|+..         +++.+..+. +
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            67899999 9999999999999888776  455677788887  9999999999999655         555455554 5


Q ss_pred             cCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 006126          455 HQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID  531 (660)
Q Consensus       455 ~~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~  531 (660)
                      |...|.+++|+|  +++++++++.||+|++||+++++.     +......+.   ..+.+++|+|+|.+++++ .|+.|+
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~---~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVHSAKSD---VEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEECCCSS---CCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEEecCCC---CceEEEEECCCCCEEEEEcCCCEEE
Confidence            778999999999  999999999999999999998653     221112333   579999999999999994 899999


Q ss_pred             EEeCCCCcee-eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126          532 VYEAPTLNHT-SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA  610 (660)
Q Consensus       532 iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~  610 (660)
                      +||+++++.+ ..+.. .|..+|++++|+|+|.+|++++ |+.|++||+++++....+....    +| ...+...+++|
T Consensus       196 iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----~~-~~~~~~~~~~~  268 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----IP-EFKTGTVTYDI  268 (343)
T ss_dssp             EEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----C------CCEEEEE
T ss_pred             EEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----cc-cccccceEEEE
Confidence            9999999887 66654 3789999999999999999999 5599999999987655443210    11 11222236999


Q ss_pred             ecCCCCEEEEEeC-CCeEEEEeCCCCceeccC
Q 006126          611 HPLEPNRIALGLT-NGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       611 sp~d~~~l~s~s~-Dg~v~iw~~~~~~~~w~~  641 (660)
                      +| ++++|++++. |+.|+||++..+...|..
T Consensus       269 ~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          269 DD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             CT-TSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred             CC-CCCEEEEecCCCCcEEEEEEcccccceEe
Confidence            99 8999999998 999999999887776764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.7e-27  Score=250.87  Aligned_cols=284  Identities=10%  Similarity=0.051  Sum_probs=189.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEeccCcCCCc----ceeeeecCC------------------CCCCCCeEEEEEecCCCEEEE
Q 006126          271 LPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPD------------------NSFGGRVVRLIYSHSGDFLVA  328 (660)
Q Consensus       271 spdg~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~l~~------------------~~h~~~V~~~~~spdg~~l~s  328 (660)
                      +|++..++.++.|+.|.+|+........    .........                  ..|...+....+++++.+|++
T Consensus        27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las  106 (393)
T 4gq1_A           27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLAC  106 (393)
T ss_dssp             SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEE
T ss_pred             CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEE
Confidence            4555556666678889999875311110    011100000                  112333333444556778999


Q ss_pred             EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----------CCEEEEEe-CCcE
Q 006126          329 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSAS-GGKI  397 (660)
Q Consensus       329 ~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----------~~~l~s~~-dg~I  397 (660)
                      ++.|++|+||+...+.....        .        .+.  ...+|.+.|++++|+          +++|++++ |++|
T Consensus       107 ~~~d~~v~lw~~~~~~~~~~--------~--------~~~--~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETIITQ--------H--------VLG--GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             EETTSCEEEEEEETTEEEEE--------E--------EEC--TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             EeCCCcEEEEECCCCcccee--------e--------eec--ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            99999999999877654111        0        111  112799999999995          46899999 9999


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE------------------------
Q 006126          398 SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK------------------------  451 (660)
Q Consensus       398 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~------------------------  451 (660)
                      ++||+.++.+...+..|...+.+++|+|++  +|++|+.|++|++||+++++....                        
T Consensus       169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            999999998888888899999999999988  799999999999999988754322                        


Q ss_pred             -eeccCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------------eeeccCCCCCCeEEEEEe
Q 006126          452 -LKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------FQTGLVPETTIVNHIQFH  516 (660)
Q Consensus       452 -~~~~~~~v~~l~~s-p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~s  516 (660)
                       ..+|...+.++.|+ |+++.+++++.|+++++||+.++..........             ....+    .......++
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  324 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----PSLLGACPH  324 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----CCSSCCEEC
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----CcceeEEEc
Confidence             23577888999987 799999999999999999998754322111000             00001    112223344


Q ss_pred             c--CCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          517 P--DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       517 p--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      |  ++.+++++ .|+.|++||+.+++.......  |..+|.+++|+|||++||+++.+| +.+|.+
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            3  33344555 789999999999988777654  578999999999999999998776 556654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=4.8e-26  Score=248.89  Aligned_cols=329  Identities=10%  Similarity=0.062  Sum_probs=242.8

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEec--cCCcee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW--QSNKQS  346 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~--~~~~~~  346 (660)
                      .++|++..+++++.|++|.+||..+    +++... ++. +|.  +..++|+|||++|++++.|+.|.+||+  .+.+. 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t----~~~~~~-i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDS----KKIVKV-IDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTT----CCEEEE-EEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCC----ceEEEE-Eec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-
Confidence            5789999999999999999999974    444332 321 133  899999999999999999999999998  44332 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEECCCCeEEEEEcCC----
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP----  414 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~----  414 (660)
                                          +..+   .+...+..++|+      |+++++++  +++|.+||..++++++++..+    
T Consensus       215 --------------------~~~i---~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~  271 (543)
T 1nir_A          215 --------------------VAEI---KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV  271 (543)
T ss_dssp             --------------------EEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred             --------------------EEEE---ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence                                2211   134457788886      56888877  799999999999999888642    


Q ss_pred             -------CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEe-CCCcEEE
Q 006126          415 -------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCV  482 (660)
Q Consensus       415 -------~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~v  482 (660)
                             ...+..+.++|++  .+++...++.|.+||..+++.+.  .+. +...+.++.|+|+|+++++++ .+++|.+
T Consensus       272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v  350 (543)
T 1nir_A          272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAV  350 (543)
T ss_dssp             SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred             CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence                   2378899999988  77888889999999998876544  333 566788999999999876554 5899999


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-CcEEEEE--ecCcEEEEeCCC-------CceeeeecCCCCCCC
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLP  552 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~--~d~~i~iwd~~~-------~~~~~~~~~~~~~~~  552 (660)
                      ||+.+++........  ...|.   +....+ ++|+ +..++++  .|++|.+||+.+       .++++++..  |...
T Consensus       351 ~D~~tg~l~~~i~~g--~~ph~---g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~  422 (543)
T 1nir_A          351 IDSKDRRLSALVDVG--KTPHP---GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGG  422 (543)
T ss_dssp             EETTTTEEEEEEECS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSC
T ss_pred             EECCCCeEEEeeccC--CCCCC---CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCC
Confidence            999997654332211  11232   233333 5787 5555555  479999999988       888899876  4667


Q ss_pred             eEEEEEccCCCEEEEEe-------cCCeEEEEECCCCeeE-EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe--
Q 006126          553 ITYATYSCDGKCIYVSC-------KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL--  622 (660)
Q Consensus       553 v~~~~~s~dg~~l~sg~-------~dg~I~iwd~~~~~~~-~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s--  622 (660)
                      +..++|+|+|++|++++       .++.|.+||+.+++.. ..+........+  .+...+..+.|+| +|+.+.++.  
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~-~g~~~~~s~~~  499 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG--EGAKRVVQPEYNK-RGDEVWFSVWN  499 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC--SSCCEEEEEEECS-SSSEEEEEEEC
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccC--CCCCceEeccCCC-CCCEEEEEeec
Confidence            78899999999999987       3679999999999876 444321100000  1123455999999 899887652  


Q ss_pred             ---CCCeEEEEeCCCCceeccC
Q 006126          623 ---TNGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       623 ---~Dg~v~iw~~~~~~~~w~~  641 (660)
                         .|+.|.|||..+++.+-..
T Consensus       500 ~~~~~~~i~v~D~~t~~~~~~i  521 (543)
T 1nir_A          500 GKNDSSALVVVDDKTLKLKAVV  521 (543)
T ss_dssp             CTTSCCEEEEEETTTTEEEEEE
T ss_pred             CCCCCCeEEEEECCCceEEEee
Confidence               4799999999999885443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1e-24  Score=231.08  Aligned_cols=289  Identities=11%  Similarity=-0.025  Sum_probs=213.9

Q ss_pred             EecCCCC-EEEEEe----CCC----cEEEEec--cCcCCCcceeeeecCCCCCCCCeEEEEEec--------------CC
Q 006126          269 TSLPDAD-SAVCAK----SLE----KSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH--------------SG  323 (660)
Q Consensus       269 ~~spdg~-~l~s~~----~dg----~i~iwd~--~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp--------------dg  323 (660)
                      .|++.|. .+++|+    .||    ++++||+  .++   ..+....+.+  |...+..+++++              .+
T Consensus        69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG---TVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT---CEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC---CEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            7778875 555776    467    8999999  642   2332333433  777888887775              26


Q ss_pred             CEEEEEECC------CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C
Q 006126          324 DFLVALTQT------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G  394 (660)
Q Consensus       324 ~~l~s~s~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d  394 (660)
                      ..++.++.+      +.|++||+.....                     .. +.  +|...+.+++|+  |++|++++ +
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~---------------------~~-l~--~~~~~v~~~~~Spdg~~la~~s~~  199 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGYNQ---------------------FV-VH--RSPQPLMSPAWSPDGSKLAYVTFE  199 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCSC---------------------EE-EE--EESSCEEEEEECTTSSEEEEEECT
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCCCC---------------------EE-Ee--CCCCcceeeEEcCCCCEEEEEEec
Confidence            667776654      6888888754322                     11 11  578889999999  88999998 6


Q ss_pred             C---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          395 G---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       395 g---~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      +   .|++||+.+++.. .+..+...+.+++|+||| .|+ +++.++  .|++||+.+++. ..+..|...+.+++|+||
T Consensus       200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd  277 (415)
T 2hqs_A          200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD  277 (415)
T ss_dssp             TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT
T ss_pred             CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC
Confidence            4   9999999998875 466777889999999999 666 666665  499999998875 567778889999999999


Q ss_pred             CCEEEEEeC-CC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCce
Q 006126          468 LNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNH  540 (660)
Q Consensus       468 ~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~  540 (660)
                      |++|++++. ++  .|++||+.+++.      . ....+.   ..+.+++|+|+|++|++ +.+   ..|++||+.+++.
T Consensus       278 g~~l~~~s~~~g~~~i~~~d~~~~~~------~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          278 SQNLAFTSDQAGRPQVYKVNINGGAP------Q-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSSCC------E-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             CCEEEEEECCCCCcEEEEEECCCCCE------E-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            999998886 44  678889887542      1 112233   46889999999999998 443   5899999998876


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      . .+..  + ..+.+++|+|||++|++++.++   .|++||+..+. ...+.       +| ...+.  +++|+|.
T Consensus       348 ~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~-------~~-~~~v~--~~~~~~~  408 (415)
T 2hqs_A          348 Q-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-------AT-DGQVK--FPAWSPY  408 (415)
T ss_dssp             E-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-------CS-SSEEE--EEEECCC
T ss_pred             E-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEee-------CC-CCCCc--CCccccc
Confidence            4 3433  2 3899999999999999988876   89999998554 44554       22 34455  9999993

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.3e-24  Score=248.42  Aligned_cols=321  Identities=11%  Similarity=0.088  Sum_probs=228.7

Q ss_pred             eeeEecCCCCEEEEEeC-CC-----cEEEEeccCcCCCcceeeeecCCCCCC----------------------CCeEEE
Q 006126          266 RESTSLPDADSAVCAKS-LE-----KSVNLKLQLINEPSECRTLLLPDNSFG----------------------GRVVRL  317 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~l~~~~h~----------------------~~V~~~  317 (660)
                      ..+.|||||++|++++. |+     .|++||+.+    +....+ +..+++.                      ..|.++
T Consensus        40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred             CCceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            34599999999999998 88     899999985    433332 2111122                      348899


Q ss_pred             EEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCC
Q 006126          318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG  395 (660)
Q Consensus       318 ~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg  395 (660)
                      +|||||++|++++. +.|.+|++.++..                  .......   .|...+.+++|+  |++|+.++++
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~------------------~~~~~l~---~~~~~~~~~~~SPDG~~la~~~~~  172 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGK------------------AAVRQLT---HGEGFATDAKLSPKGGFVSFIRGR  172 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCST------------------TSCCBCC---CSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCc------------------ceEEEcc---cCCcccccccCCCCCCEEEEEeCC
Confidence            99999999999987 8888888765510                  0111111   467789999999  8899999988


Q ss_pred             cEEEEECCCCeEEEEEcCCCCC----------------eEEEEEcCCC-eEEEEeCCC----------------------
Q 006126          396 KISIFSLETFQTLATFANPPPI----------------ATYFILLPQD-LFAFGFDDS----------------------  436 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~----------------v~~v~~sp~~-~l~s~~~d~----------------------  436 (660)
                      .|++||+.+++..+....+...                +.+++|+||| .|++++.|+                      
T Consensus       173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            9999999998776654444332                4679999999 888887665                      


Q ss_pred             -----------eEEEEeCCC-CceeeEee--ccCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEcCCCeeeeceeee
Q 006126          437 -----------SILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVGWKKLCSKFLH  497 (660)
Q Consensus       437 -----------~I~iwd~~~-~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~  497 (660)
                                 .|++||+.+ ++......  .|...+..++| |||++|++++.     +..|++||+.+++...     
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-----  326 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV-----  326 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE-----
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE-----
Confidence                       899999998 87654443  37788999999 99999987764     5679999999865322     


Q ss_pred             eeeeccCCCCC---CeEEEEEecCCcEEEEE-ecCcEEEEeCC-CCceeeeecCCCCCCCeEEE-EEccCCCEEEEE-ec
Q 006126          498 SFQTGLVPETT---IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA-TYSCDGKCIYVS-CK  570 (660)
Q Consensus       498 ~~~~~~~~~~~---~v~~~~~sp~~~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~sg-~~  570 (660)
                       +...+..  .   .+.+++|+|||++++++ .++.++||.+. ++. ...+..  +...+..+ .|+|||+.|+.. +.
T Consensus       327 -~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~  400 (741)
T 2ecf_A          327 -LAHETSP--TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGI  400 (741)
T ss_dssp             -EEEEECS--SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECS
T ss_pred             -EEEcCCC--CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeC
Confidence             1222221  2   34689999999977775 67766777654 344 555544  46778787 599999987654 44


Q ss_pred             CC--eEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC----CeEEEEeCCCCce
Q 006126          571 SG--HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV  637 (660)
Q Consensus       571 dg--~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D----g~v~iw~~~~~~~  637 (660)
                      ++  .++||++.. +.....+..         ...+.  .++|+| |+++|+....+    +.+.+|+...+..
T Consensus       401 ~~~~~~~l~~~~~~g~~~~~l~~---------~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~~~  462 (741)
T 2ecf_A          401 ESARESQIYAVPLQGGQPQRLSK---------APGMH--SASFAR-NASVYVDSWSNNSTPPQIELFRANGEKI  462 (741)
T ss_dssp             SCTTCBEEEEEETTCCCCEECCC---------SCSEE--EEEECT-TSSEEEEEEEETTEEEEEEEEETTSCEE
T ss_pred             CCCceEEEEEEEcCCCCeeeccc---------CCCce--EEEECC-CCCEEEEEecCCCCCCeEEEEEcCCCeE
Confidence            55  899999864 444444431         22344  899999 89888765443    5789999865543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=2.2e-24  Score=255.50  Aligned_cols=331  Identities=12%  Similarity=0.056  Sum_probs=238.5

Q ss_pred             eeEecCCCCEEEEEeCC------CcEEEEeccCcCCCcceeeeecCCCCCCCCe-------EEEEEecCCCEEEEEECC-
Q 006126          267 ESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRV-------VRLIYSHSGDFLVALTQT-  332 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V-------~~~~~spdg~~l~s~s~d-  332 (660)
                      ...|||||++||+++.+      ..|.+|+..+    +....  +..  |...+       ..++|||||+.+++++.+ 
T Consensus        57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~----g~~~~--lt~--~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~  128 (1045)
T 1k32_A           57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN----GEIKR--ITY--FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ  128 (1045)
T ss_dssp             EEEECTTSSEEEEEEEESTTCCEEEEEEEETTT----TEEEE--CCC--CCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred             CeEECCCCCEEEEEEeeccCCCCCeEEEEECCC----CCeEE--ccc--CCCcccccccccccccCCCCCEEEEEECCcC
Confidence            35999999999988654      4789999874    44444  332  77778       999999999966776644 


Q ss_pred             -----CcEEEEeccCCceeeeeec----------------------------cceeEEEecC-CCCceeeecccCCCCCC
Q 006126          333 -----ATHKLWKWQSNKQSLEEEN----------------------------VNMESQLYQP-SSKLVMTNDIAADPKDS  378 (660)
Q Consensus       333 -----g~i~vw~~~~~~~~~~~~~----------------------------~~~~~~~~~~-~~~~~~~~~~~~~h~~~  378 (660)
                           ..+.+|++.++........                            ......+|.. .++.....   .+|...
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~~  205 (1045)
T 1k32_A          129 PFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTH  205 (1045)
T ss_dssp             SSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSC
T ss_pred             CCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCCc
Confidence                 3577777766553321000                            0111233321 12333322   279999


Q ss_pred             eEEEEEe-CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126          379 ISCFALR-GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG  454 (660)
Q Consensus       379 v~~v~~s-~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~  454 (660)
                      +.++.|+ +.++++++ ++.+.+|.+.. +.....+..+. .+...+|+||| .++++ .++.|++||+... .+..+.+
T Consensus       206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~  282 (1045)
T 1k32_A          206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEI  282 (1045)
T ss_dssp             CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCC
T ss_pred             ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-Eeeeecc
Confidence            9999999 54444555 78889998753 44455555554 45677999999 78877 4899999999544 3435544


Q ss_pred             -----------cCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC-CeEEEEEecCCcE
Q 006126          455 -----------HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQIH  521 (660)
Q Consensus       455 -----------~~~~v~~l~~s-p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~  521 (660)
                                 |...+.+++|+ |||+++++++ ++.|.+|++.++...     .  ...|.   . .+..++|+ ||+.
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-----~--~~~~~---~~~~~~~~~s-dg~~  350 (1045)
T 1k32_A          283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-----K--VPEPL---RIRYVRRGGD-TKVA  350 (1045)
T ss_dssp             CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-----E--CSCCS---CEEEEEECSS-SEEE
T ss_pred             CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-----E--ccCCC---cceEEeeeEc-CCCe
Confidence                       34468999999 9999999888 889999999875421     1  22333   4 68899999 9999


Q ss_pred             EEE-EecCcEE-EEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126          522 LLS-IHEGQID-VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI  599 (660)
Q Consensus       522 l~~-~~d~~i~-iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~  599 (660)
                      ++. +.++.+. +||+.+++.. .+.  .|...+..++|+|||++|++++.++.|++||+.+++......       +| 
T Consensus       351 l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-------~~-  419 (1045)
T 1k32_A          351 FIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-------SR-  419 (1045)
T ss_dssp             EEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CS-
T ss_pred             EEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-------CC-
Confidence            988 4667788 8999876653 333  357889999999999999999999999999999998777664       22 


Q ss_pred             CcccceEEEEEecCCCCEEEEEeCCC----------eEEEEeCCCCce
Q 006126          600 SLELYPLVIAAHPLEPNRIALGLTNG----------RVHVIEPLESEV  637 (660)
Q Consensus       600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg----------~v~iw~~~~~~~  637 (660)
                      ...+.  +++|+| ||++|++++.++          .|++||+.+++.
T Consensus       420 ~~~v~--~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          420 EAMIT--DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             SSCCC--CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             CCCcc--ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            33445  899999 899999887654          999999998763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.6e-24  Score=229.50  Aligned_cols=277  Identities=12%  Similarity=0.057  Sum_probs=204.6

Q ss_pred             CCCeEEEEEecCCC-EEEEEE----CCC----cEEEEec--cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126          311 GGRVVRLIYSHSGD-FLVALT----QTA----THKLWKW--QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI  379 (660)
Q Consensus       311 ~~~V~~~~~spdg~-~l~s~s----~dg----~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  379 (660)
                      ...+...+|++.|. ++++|+    .||    .+++||+  .+++....        ..+.             +|...+
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~--------~~~~-------------~~~~~~  120 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ--------NSYK-------------VNKQWL  120 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE--------EEEE-------------ECGGGH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee--------eEEE-------------cChhHH
Confidence            35677888988884 666776    467    8888888  66653211        0010             233333


Q ss_pred             EEEEEe----------------CCEEEEEe-C------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC
Q 006126          380 SCFALR----------------GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD  435 (660)
Q Consensus       380 ~~v~~s----------------~~~l~s~~-d------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d  435 (660)
                      ..+++.                +..++.++ +      +.|++||+. +...+.+..|...+.+++|+||| .|++++.+
T Consensus       121 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~  199 (415)
T 2hqs_A          121 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE  199 (415)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEec
Confidence            333222                45566555 4      699999997 45567777888999999999999 99999887


Q ss_pred             C---eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126          436 S---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTI  509 (660)
Q Consensus       436 ~---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  509 (660)
                      +   .|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.|+.  |++||+.+++.      . ....|.   ..
T Consensus       200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~------~-~l~~~~---~~  268 (415)
T 2hqs_A          200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------R-QVTDGR---SN  268 (415)
T ss_dssp             TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------E-ECCCCS---SC
T ss_pred             CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE------E-eCcCCC---Cc
Confidence            5   9999999998765 5667888999999999999888 5666655  99999988542      1 223444   57


Q ss_pred             eEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC
Q 006126          510 VNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL  582 (660)
Q Consensus       510 v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~  582 (660)
                      +.+++|+|||++|++ +. ++  .|++||+.+++.. .+..  +...+.+++|+|||++|++++.+   +.|++||+.++
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            999999999999988 43 34  6888899877643 3332  36678899999999999988875   58999999998


Q ss_pred             eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC---eEEEEeCCCCc
Q 006126          583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG---RVHVIEPLESE  636 (660)
Q Consensus       583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg---~v~iw~~~~~~  636 (660)
                      +... +.       ++ .   .+.+++|+| ||++|++++.|+   .|++|++..+.
T Consensus       346 ~~~~-l~-------~~-~---~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          346 GVQV-LS-------ST-F---LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             CEEE-CC-------CS-S---SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             CEEE-ec-------CC-C---CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc
Confidence            7643 32       21 1   244899999 899999988877   79999997554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=8.6e-23  Score=223.14  Aligned_cols=297  Identities=13%  Similarity=0.108  Sum_probs=213.8

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEec--cCcCCCcceeeeecCCCCCCCCeEEEEEec----CCCEEEEEEC-CCcEEEEe
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQ-TATHKLWK  339 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp----dg~~l~s~s~-dg~i~vw~  339 (660)
                      .+.|+|||+++++++.|++|++||+  .+    ..+.. +++   +...+.+++|+|    ||+++++++. +++|.+||
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t----~~~~~-~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D  254 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKE----PTKVA-EIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD  254 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSS----CEEEE-EEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCC----CcEEE-EEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence            4589999999999999999999999  53    33322 232   456789999999    9999999985 89999999


Q ss_pred             ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE-EEEEe-CCcEEEEECCCCeEEE--EEcC
Q 006126          340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLA--TFAN  413 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~-l~s~~-dg~I~iwd~~~~~~~~--~~~~  413 (660)
                      ..+.+....          +.......-...+  .+...+..+.++  +.. +++.. ++.|.+||..+++.+.  .+ .
T Consensus       255 ~~t~~~~~~----------i~~~g~~~~~~~~--~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~  321 (543)
T 1nir_A          255 GETLEPKQI----------VSTRGMTVDTQTY--HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G  321 (543)
T ss_dssp             TTTCCEEEE----------EECCEECSSSCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred             cccccccee----------ecccCcccCcccc--ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence            877654211          1110000000000  123378899998  554 44555 7999999998866544  33 3


Q ss_pred             CCCCeEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCceeeEeec----cCCCeEEEEEeCC-CCEEEEEe-CCCcEEEEEc
Q 006126          414 PPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDA  485 (660)
Q Consensus       414 ~~~~v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~-~~~l~s~s-~dg~i~vwd~  485 (660)
                      +...+.++.|+|+| ++++ +..+++|.+||+.+++++..+..    |.+....+ ++|+ +..++++. .|++|.+||+
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            45667789999999 6654 45688999999999999888864    55444443 5787 55666665 5899999999


Q ss_pred             CCCee--eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--------cCcEEEEeCCCCcee-eeecC------CC
Q 006126          486 VGWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTLNHT-SQLVP------DK  548 (660)
Q Consensus       486 ~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------d~~i~iwd~~~~~~~-~~~~~------~~  548 (660)
                      .+...  .....++ ...+|.   ..+..++++|+|++|+++.        +++|.+||+.+++.. ..+..      ..
T Consensus       401 ~~~~~~~~~~~~v~-~l~~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~  476 (543)
T 1nir_A          401 DPKNHPQYAWKKVA-ELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE  476 (543)
T ss_dssp             CTTTCTTTBTSEEE-EEECSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             CCCCCchhcCeEEE-EEEcCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence            87210  0012334 344554   4678899999999999953        679999999998876 44311      13


Q ss_pred             CCCCeEEEEEccCCCEEEEEe-----cCCeEEEEECCCCeeEEEee
Q 006126          549 MDLPITYATYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       549 ~~~~v~~~~~s~dg~~l~sg~-----~dg~I~iwd~~~~~~~~~~~  589 (660)
                      +...+..+.|+|+|+.++++.     .|+.|.|||..+++++.+++
T Consensus       477 ~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          477 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            477899999999999999764     37999999999999998887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.3e-23  Score=239.36  Aligned_cols=322  Identities=13%  Similarity=0.077  Sum_probs=218.0

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCC---CeEEEEEecCCCEEEEEECC---------CcE
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQT---------ATH  335 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~---~V~~~~~spdg~~l~s~s~d---------g~i  335 (660)
                      +.|||||+++++ +.||+|++||..+    ++.... +..  |..   .|.+++|||||++|++++.+         +.+
T Consensus        22 ~~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~-~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           22 AKWISDTEFIYR-EQKGTVRLWNVET----NTSTVL-IEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEE-ECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cEEcCCCcEEEE-eCCCCEEEEECCC----CcEEEE-ecc--ccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            389999997776 7899999999985    444333 322  443   49999999999999999875         455


Q ss_pred             EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcC
Q 006126          336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN  413 (660)
Q Consensus       336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~  413 (660)
                      .+||+.++.                     ........+|...+..++|+  |++|+.++++.|++||+.+++..+....
T Consensus        94 ~~~d~~~~~---------------------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           94 VLSKIPHGD---------------------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEEESSSCC---------------------CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC
T ss_pred             EEEECCCCc---------------------eEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC
Confidence            566655443                     21111112455568889999  8899999999999999999887776655


Q ss_pred             CCCCe------------------EEEEEcCCC-eEEEEeCCC----------------------------------eEEE
Q 006126          414 PPPIA------------------TYFILLPQD-LFAFGFDDS----------------------------------SILV  440 (660)
Q Consensus       414 ~~~~v------------------~~v~~sp~~-~l~s~~~d~----------------------------------~I~i  440 (660)
                      +...+                  .+++|+||| .|++++.|+                                  .|++
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            44333                  789999999 888877543                                  7999


Q ss_pred             EeCCCCceeeEeecc------CCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe
Q 006126          441 HCPCTKKTKAKLKGH------QNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV  510 (660)
Q Consensus       441 wd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v  510 (660)
                      ||+.+++....+..+      ...+..++|+|||+++++.+.    +..|++||+.+++....     ....+.   ..+
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~-----~~~~~~---~~~  304 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK-----HEDESE---AWL  304 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE-----EEEECS---SCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE-----EEeccC---CEE
Confidence            999988765666544      567899999999998877653    35799999998653211     111222   233


Q ss_pred             ----EEEEEecCCcEEEE--E-ecC------cEEEEe-CCCCce--eeeecCCCCCCCeEE-EEEccCCCEEEEEecC--
Q 006126          511 ----NHIQFHPDQIHLLS--I-HEG------QIDVYE-APTLNH--TSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS--  571 (660)
Q Consensus       511 ----~~~~~sp~~~~l~~--~-~d~------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~dg~~l~sg~~d--  571 (660)
                          ..++|+|||+.|+.  + .++      .|++|| ...+..  ...+..  +...+.. ++|+|||+.|+..+.+  
T Consensus       305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~  382 (723)
T 1xfd_A          305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDL  382 (723)
T ss_dssp             CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSC
T ss_pred             eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCC
Confidence                37899999997775  3 455      577888 444441  445543  1344554 6999999999876655  


Q ss_pred             -CeEEEEECCCCe--eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC-CC--eEEEEeCCCCc
Q 006126          572 -GHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NG--RVHVIEPLESE  636 (660)
Q Consensus       572 -g~I~iwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~-Dg--~v~iw~~~~~~  636 (660)
                       +.++||++....  ....+...    .+| ...+.  .++|+| |+++++.... ++  ...+++..+++
T Consensus       383 ~~~~~l~~~~~~~~~~~~~l~~~----~~~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~~~~~~~~  445 (723)
T 1xfd_A          383 PRRRQLYSANTVGNFNRQCLSCD----LVE-NCTYF--SASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKK  445 (723)
T ss_dssp             TTCCEEEEECSSTTCCCBCSSTT----SSS-SCCCC--EEEECT-TSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred             CcceEEEEEeCCCCCCcceeccc----ccC-CCCeE--EEEECC-CCCEEEEEccCCCCCeEEEEECCCCC
Confidence             789999986532  22222210    001 22344  899999 8888776533 22  33445554443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=1.1e-22  Score=241.02  Aligned_cols=312  Identities=11%  Similarity=-0.007  Sum_probs=233.9

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCC---------CCCCeEEEEEe-cCCCEEEEEECCCcE
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS---------FGGRVVRLIYS-HSGDFLVALTQTATH  335 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~---------h~~~V~~~~~s-pdg~~l~s~s~dg~i  335 (660)
                      ....|||||++++++ .++.|.+|+..    ...+..  +....         |...+.+++|| |||++|++++ ++.+
T Consensus       248 ~~~~~SpDG~~la~~-~~~~i~~~d~~----~~~l~~--l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i  319 (1045)
T 1k32_A          248 YPRHLNTDGRRILFS-KGGSIYIFNPD----TEKIEK--IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQA  319 (1045)
T ss_dssp             CEEEEEESSSCEEEE-ETTEEEEECTT----TCCEEE--CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEE
T ss_pred             ceeeEcCCCCEEEEE-eCCEEEEecCC----ceEeee--eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEE
Confidence            345999999999988 48999999984    333432  32211         34479999999 9999999888 7888


Q ss_pred             EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC-CeEEEEEe-CCEEEEEe-CCcEE-EEECCCCeEEEEE
Q 006126          336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR-GSHLFSAS-GGKIS-IFSLETFQTLATF  411 (660)
Q Consensus       336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s-~~~l~s~~-dg~I~-iwd~~~~~~~~~~  411 (660)
                      .+|+...+..                     ....   .|.. .+..++|+ |+.|++++ ++.+. +||+.+++... +
T Consensus       320 ~~~~~~~~~~---------------------~~~~---~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l  374 (1045)
T 1k32_A          320 FIQDVSGTYV---------------------LKVP---EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F  374 (1045)
T ss_dssp             EEECTTSSBE---------------------EECS---CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C
T ss_pred             EEEcCCCCce---------------------EEcc---CCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE-e
Confidence            8887655432                     1111   4556 78889998 77888888 67888 89998776543 4


Q ss_pred             cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC----------cE
Q 006126          412 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA----------QL  480 (660)
Q Consensus       412 ~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----------~i  480 (660)
                      ..+...+..++|+||| .|++++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++          .|
T Consensus       375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i  454 (1045)
T 1k32_A          375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  454 (1045)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence            4777889999999999 999999999999999999988888878999999999999999999887654          89


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce-------e-----------
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH-------T-----------  541 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~-------~-----------  541 (660)
                      ++||+.+++.      . ....|.   ..+.+++|+|||++|++ +.++...+|+......       +           
T Consensus       455 ~l~d~~~g~~------~-~l~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (1045)
T 1k32_A          455 HVYDMEGRKI------F-AATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN  524 (1045)
T ss_dssp             EEEETTTTEE------E-ECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred             EEEECCCCcE------E-EeeCCC---cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCC
Confidence            9999998541      1 123344   46888999999999988 5656666665432211       0           


Q ss_pred             -----------------------eeecCCCCCCCeEEEEEccCCCEEEE-------------EecCCeEEEEECCCCeeE
Q 006126          542 -----------------------SQLVPDKMDLPITYATYSCDGKCIYV-------------SCKSGHVKVFDTSTLELR  585 (660)
Q Consensus       542 -----------------------~~~~~~~~~~~v~~~~~s~dg~~l~s-------------g~~dg~I~iwd~~~~~~~  585 (660)
                                             .......+...+..++++|||+++++             ...+..|++||+.+++..
T Consensus       525 ~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~  604 (1045)
T 1k32_A          525 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT  604 (1045)
T ss_dssp             GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE
T ss_pred             ccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE
Confidence                                   00011124567889999999987875             122457899999998754


Q ss_pred             EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ....            .  +..++|+| ||++|++++.| .|++||+.+++
T Consensus       605 ~l~~------------~--v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          605 EVKN------------N--LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEE------------E--EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             Eeec------------C--cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            3321            1  33889999 89999999876 89999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=3.3e-22  Score=205.43  Aligned_cols=278  Identities=13%  Similarity=0.150  Sum_probs=190.2

Q ss_pred             EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC-CcEEEEecc--CCceeeeeecc
Q 006126          276 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQ--SNKQSLEEENV  352 (660)
Q Consensus       276 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d-g~i~vw~~~--~~~~~~~~~~~  352 (660)
                      .+++++.|+.|++|++..   .+........  .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...      
T Consensus         7 l~~~~~~~~~v~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~------   75 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNH---EGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------   75 (343)
T ss_dssp             EEEEEGGGTEEEEEEECT---TSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred             EEEeCCCCCeEEEEEECC---CCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence            344447899999999963   2222221111  167789999999999999999886 999999986  33220      


Q ss_pred             ceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECC---CCeEEEEEcCCCCCeEEEEEcC
Q 006126          353 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE---TFQTLATFANPPPIATYFILLP  425 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~---~~~~~~~~~~~~~~v~~v~~sp  425 (660)
                                   .+....  .+ ..+..++|+  +++|++++  ++.|.+||+.   +++....+..+ ..+.+++|+|
T Consensus        76 -------------~~~~~~--~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~  138 (343)
T 1ri6_A           76 -------------FAAESA--LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP  138 (343)
T ss_dssp             -------------EEEEEE--CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred             -------------eccccc--cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence                         111110  12 267889999  77776666  6889999994   44455555433 4588899999


Q ss_pred             CC-eEEEEe-CCCeEEEEeCCC-Cceee----Eeec-cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC--Ceeeece
Q 006126          426 QD-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSK  494 (660)
Q Consensus       426 ~~-~l~s~~-~d~~I~iwd~~~-~~~~~----~~~~-~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~--~~~~~~~  494 (660)
                      ++ .+++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|+++++++++ .++.|.+||+..  ++.....
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~  218 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  218 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence            99 777776 899999999987 65432    2232 345788999999999776555 789999999954  3321111


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC--C--CceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--T--LNHTSQLVPDKMDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg  568 (660)
                      .+.....++.. ...+..++|+|+|+++++ + .++.|.+||+.  +  .+.+..+..   ...+..++|+|+|++|+++
T Consensus       219 ~~~~~~~~~~~-~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          219 TLDMMPENFSD-TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             EEECSCTTCCS-CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEE
T ss_pred             eccccCccccc-cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEe
Confidence            22211222110 135778999999998886 4 67899999998  2  334444433   2338899999999999888


Q ss_pred             e-cCCeEEEE--ECCCCeeE
Q 006126          569 C-KSGHVKVF--DTSTLELR  585 (660)
Q Consensus       569 ~-~dg~I~iw--d~~~~~~~  585 (660)
                      + .++.|.+|  |..+++..
T Consensus       295 ~~~~~~v~v~~~d~~~g~~~  314 (343)
T 1ri6_A          295 GQKSHHISVYEIVGEQGLLH  314 (343)
T ss_dssp             CTTTCEEEEEEEETTTTEEE
T ss_pred             cCCCCeEEEEEEcCCCceee
Confidence            7 57999999  55566543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.2e-22  Score=230.84  Aligned_cols=319  Identities=13%  Similarity=0.091  Sum_probs=217.6

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCC-cceeee-ec----CC-----CCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTL-LL----PD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKL  337 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~-~l----~~-----~~h~~~V~~~~~spdg~~l~s~s~dg~i~v  337 (660)
                      .|+  |..+++++.|+ | +||..++... ..+... .+    ..     ..+...|.+++|||| ++++.+. ++.+.+
T Consensus        32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~  105 (706)
T 2z3z_A           32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVG  105 (706)
T ss_dssp             EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEE
T ss_pred             cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEE
Confidence            677  67777788888 8 9999863320 111110 00    00     001257999999999 6666554 589998


Q ss_pred             EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCC-----CeEEEE
Q 006126          338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-----FQTLAT  410 (660)
Q Consensus       338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~-----~~~~~~  410 (660)
                      ||+.+++.                     ....   .+...+.+++|+  |++|+++.++.|++||+.+     ++..+.
T Consensus       106 ~d~~~~~~---------------------~~l~---~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~  161 (706)
T 2z3z_A          106 FDMLARKV---------------------TYLF---DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAV  161 (706)
T ss_dssp             EETTTTEE---------------------EEEE---CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEES
T ss_pred             EECCCCce---------------------EEcc---CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEe
Confidence            88766543                     1111   355667788999  8899997799999999998     776654


Q ss_pred             EcCCCCC--------------eEEEEEcCCC-eEEEEe---------------------------------CCCeEEEEe
Q 006126          411 FANPPPI--------------ATYFILLPQD-LFAFGF---------------------------------DDSSILVHC  442 (660)
Q Consensus       411 ~~~~~~~--------------v~~v~~sp~~-~l~s~~---------------------------------~d~~I~iwd  442 (660)
                      ...+...              +.++.|+||| .|++++                                 .+..|++||
T Consensus       162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d  241 (706)
T 2z3z_A          162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH  241 (706)
T ss_dssp             CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred             ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence            4433332              4789999999 888887                                 446899999


Q ss_pred             CCCCceeeEee--ccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126          443 PCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  515 (660)
Q Consensus       443 ~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  515 (660)
                      +.+++......  .|...+.+++|+|||++|++++.++     .|++||+.+++...  .+.  ...+......+.+++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--~~~--~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          242 LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR--TLF--VETDKHYVEPLHPLTF  317 (706)
T ss_dssp             TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE--EEE--EEECSSCCCCCSCCEE
T ss_pred             CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee--EEE--EccCCCeECccCCcee
Confidence            99887654442  4667899999999999999988775     89999999863211  111  1111100012467899


Q ss_pred             ec--CCcEEEEE-ecCcEEEEeCC-CCceeeeecCCCCCCCeEE-EEEccCCCEEEEEecC-C----eEEEEECCCCeeE
Q 006126          516 HP--DQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS-G----HVKVFDTSTLELR  585 (660)
Q Consensus       516 sp--~~~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~sg~~d-g----~I~iwd~~~~~~~  585 (660)
                      +|  ||++++++ .++.+++|++. ++..+..+..  +...+.. ++|+|||+.|+.++.+ +    .|+.||+.+++..
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  395 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK  395 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE
T ss_pred             ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce
Confidence            99  99988875 77888888775 5666666654  3666776 7999999988766554 4    6778888877632


Q ss_pred             EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC----CeEEEEeCCCCc
Q 006126          586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE  636 (660)
Q Consensus       586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D----g~v~iw~~~~~~  636 (660)
                       .+.        + ...+.  +++|+| |+++++..+.+    +.|++||+.+++
T Consensus       396 -~l~--------~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          396 -DLT--------P-ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             -ESC--------C-SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             -ecc--------C-CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence             322        1 22344  899999 89988776443    569999998876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.5e-21  Score=199.89  Aligned_cols=286  Identities=12%  Similarity=0.048  Sum_probs=199.7

Q ss_pred             EEEecCCCE-EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe
Q 006126          317 LIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS  393 (660)
Q Consensus       317 ~~~spdg~~-l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~  393 (660)
                      ..|.+++++ +++.+.++.|.+||..+++.                     .....  .+...+ +++|+  ++++++++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~--~~~~~~-~~~~s~dg~~l~~~~   58 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------LNQIT--LGYDFV-DTAITSDCSNVVVTS   58 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------EEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------eeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence            346666665 56666789999988776654                     11111  234445 89998  77666666


Q ss_pred             --CCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCC-eEEEEeCCC---eEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126          394 --GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       394 --dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp  466 (660)
                        ++.|.+||+.+++. ...+..+.....+++|+|+| .++++..++   .|.+||+.+++.+..+.. .....+++|+|
T Consensus        59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp  137 (331)
T 3u4y_A           59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP  137 (331)
T ss_dssp             STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred             CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence              68999999999987 77776666666559999999 777555553   899999999988887764 44578999999


Q ss_pred             CCCEEEE-EeCCCc-EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce--
Q 006126          467 SLNVLVS-SGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH--  540 (660)
Q Consensus       467 ~~~~l~s-~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~--  540 (660)
                      +|+++++ ...++. |.+|++............ ... ..   ..+..++|+|+|+++++ + .++.|++||+.+++.  
T Consensus       138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~-~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FIS-GG---TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EEC-SS---SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             CCCEEEEEecCCCceEEEEEECCCCcEeecCCc-ccc-CC---CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            9986554 455688 999999864322111111 111 12   46889999999997776 4 578999999999888  


Q ss_pred             -eeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCee--EEEeecccccCCCCcCcccc-eEEEEEecCCC
Q 006126          541 -TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELY-PLVIAAHPLEP  615 (660)
Q Consensus       541 -~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~--~~~~~~~~~~~~gh~~~~v~-~~~v~~sp~d~  615 (660)
                       +..+..   ...+..++|+|||+++++++ .++.|.+||+.+++.  +..+......  .  ..... ...++|+| |+
T Consensus       213 ~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~sp-dg  284 (331)
T 3u4y_A          213 LLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI--D--PRPLFGANQMALNK-TE  284 (331)
T ss_dssp             EEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC--C--CGGGTTCCCEEECT-TS
T ss_pred             eeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc--C--CCCcccccceEECC-CC
Confidence             766653   46678899999999877665 468899999999987  3333211000  0  11111 13689999 88


Q ss_pred             CEEEEEe-CCCeEEEEeCCCCceecc
Q 006126          616 NRIALGL-TNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       616 ~~l~s~s-~Dg~v~iw~~~~~~~~w~  640 (660)
                      ++|++++ .++.|.+||+......+-
T Consensus       285 ~~l~v~~~~~~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          285 TKLFISANISRELKVFTISGKVVGYV  310 (331)
T ss_dssp             SEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             CEEEEecCCCCcEEEEEecCCcccce
Confidence            8876555 567999999988766443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.7e-21  Score=201.20  Aligned_cols=270  Identities=13%  Similarity=0.083  Sum_probs=205.1

Q ss_pred             CCCeEEEEEecCCCEEEEEECC-------CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQT-------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA  383 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  383 (660)
                      ...+..++|+|+|+++++++.+       +.|.+||..+++.                     +....   ....+..++
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------~~~~~---~~~~~~~~~   95 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------TQAIH---NDLKPFGAT   95 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------EEEEE---ESSCCCSEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------EEEEe---cCCCcceEE
Confidence            5678999999999999888754       4677776655443                     22211   223356788


Q ss_pred             Ee--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCC---------eEEEEEcCCC-eEEEEe--CCCeEEEEeCCCCc
Q 006126          384 LR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI---------ATYFILLPQD-LFAFGF--DDSSILVHCPCTKK  447 (660)
Q Consensus       384 ~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~---------v~~v~~sp~~-~l~s~~--~d~~I~iwd~~~~~  447 (660)
                      |+  +++++.++  ++.|.+||..+++.+..+..+...         +.+++|+|++ .+++++  .++.|.+||+.+++
T Consensus        96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A           96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK  175 (353)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred             ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence            88  77666555  689999999999998888754322         6889999999 666555  57899999999999


Q ss_pred             eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--
Q 006126          448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--  525 (660)
Q Consensus       448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--  525 (660)
                      .+..+..+...+.++.|+|+|+++++++.++.|.+||+.+++........  ..++.   ..+..++|+|+|++++++  
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKE---HFFINISLDTARQRAFITDS  250 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSC---CCEEEEEEETTTTEEEEEES
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCC---cccceEEECCCCCEEEEEeC
Confidence            88888766667889999999999999999999999999997654332221  11222   467889999999988774  


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                      .++.|.+||..+++.+..+....    ...++|+|+|+++++++ .++.|.+||..+++.+..+...         .  .
T Consensus       251 ~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---------~--~  315 (353)
T 3vgz_A          251 KAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---------T--H  315 (353)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---------S--E
T ss_pred             CCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---------C--C
Confidence            45899999999999888876532    25699999999776665 6899999999999988877531         1  2


Q ss_pred             eEEEEEecCCCCEEEEEeCCC
Q 006126          605 PLVIAAHPLEPNRIALGLTNG  625 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg  625 (660)
                      +.+++|+| |+++++.+..++
T Consensus       316 ~~~~~~s~-dg~~l~v~~~~~  335 (353)
T 3vgz_A          316 PNSLALSA-DGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEECT-TSCEEEEEEECC
T ss_pred             CCeEEEcC-CCCEEEEEEccc
Confidence            44899999 888776666553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=2.1e-22  Score=230.13  Aligned_cols=301  Identities=10%  Similarity=0.065  Sum_probs=206.7

Q ss_pred             CCCeEEEEEecCCCEEEEEEC-CC-----cEEEEeccCCceeeeeeccceeE--EEecCCCCceeeecccCCCCCCeEEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQ-TA-----THKLWKWQSNKQSLEEENVNMES--QLYQPSSKLVMTNDIAADPKDSISCF  382 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~-dg-----~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v  382 (660)
                      ...|.+++|||||++|++++. |+     .|.+||+.+++...........+  ..+...... .+..........+.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKA-RRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhh-hhhhhhhccccCccee
Confidence            567999999999999999998 88     89999988775422200000000  000000000 0000000001347788


Q ss_pred             EEe--CCEEEEEeCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126          383 ALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN  457 (660)
Q Consensus       383 ~~s--~~~l~s~~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~  457 (660)
                      +|+  |++|++++++.|.+||+.++.  ....+..+...+.+++|+||| .|++++ ++.|++||+.+++.......+..
T Consensus       115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             EECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             EECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            999  889999999999999999873  344566777889999999999 888887 56999999998876655444433


Q ss_pred             C----------------eEEEEEeCCCCEEEEEeCCC---------------------------------cEEEEEcCC-
Q 006126          458 R----------------ITCLAYSLSLNVLVSSGADA---------------------------------QLCVWDAVG-  487 (660)
Q Consensus       458 ~----------------v~~l~~sp~~~~l~s~s~dg---------------------------------~i~vwd~~~-  487 (660)
                      .                +.++.|+|||++|++++.|+                                 .|++||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                47799999999999988765                                 788999987 


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-----cCcEEEEeCCCCceeeeecCCCCCC---CeEEEEE
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDL---PITYATY  558 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-----d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~  558 (660)
                      ++...   +. ....|.   ..+..++| |||++|++ +.     +..|++||+.+++....+... ...   .+..++|
T Consensus       274 ~~~~~---~~-~~~~~~---~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~  344 (741)
T 2ecf_A          274 AQTQW---ID-LGKEQD---IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-SPTWVPLHNSLRF  344 (741)
T ss_dssp             CCCEE---EC-CCSCSS---EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-CSSCCCCCSCCEE
T ss_pred             CceEE---ec-CCCCcc---eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-CCCcCCcCCceEE
Confidence            65321   11 111344   57899999 99999997 33     467999999999876665432 122   4568899


Q ss_pred             ccCCCEEEEEecCCeEEEEECC-CCeeEEEeecccccCCCCcCcccceEEE-EEecCCCCEEE-EEeCCC--eEEEEeCC
Q 006126          559 SCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIA-LGLTNG--RVHVIEPL  633 (660)
Q Consensus       559 s~dg~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v-~~sp~d~~~l~-s~s~Dg--~v~iw~~~  633 (660)
                      +|||+++++++.||.++||.+. +++ ...+.       ++ ...+.  .+ .|+| +++.|+ +++.|+  .++||++.
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-------~~-~~~v~--~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALT-------HG-NWSVD--ELLAVDE-KAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESC-------CS-SSCEE--EEEEEET-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeee-------ec-ceEEE--eEeEEeC-CCCEEEEEEeCCCCceEEEEEEE
Confidence            9999999999999988887765 344 44443       22 22233  65 6999 788765 455555  89999986


Q ss_pred             C
Q 006126          634 E  634 (660)
Q Consensus       634 ~  634 (660)
                      .
T Consensus       413 ~  413 (741)
T 2ecf_A          413 L  413 (741)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4.8e-22  Score=203.72  Aligned_cols=270  Identities=12%  Similarity=0.032  Sum_probs=200.2

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC-CeEEEEEe--CCEEEEEe--CCcEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR--GSHLFSAS--GGKIS  398 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s--~~~l~s~~--dg~I~  398 (660)
                      +++++++.++.|.+||..+++.                     +..... ++.. .+..++|+  +++++.++  ++.|.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~   59 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV---------------------DKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV   59 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcE---------------------EEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence            4789999999999998776643                     111110 1222 46788998  66665554  68999


Q ss_pred             EEECCCCeEEEEEcCCC-----CCeEEEEEcCCC-eEEEEe------------CCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126          399 IFSLETFQTLATFANPP-----PIATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRIT  460 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~~-----~~v~~v~~sp~~-~l~s~~------------~d~~I~iwd~~~~~~~~~~~~~~~~v~  460 (660)
                      +||+.+++.+..+....     ..+.+++|+|+| .+++++            .++.|.+||+.+++.+..+.. ...+.
T Consensus        60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~  138 (337)
T 1pby_B           60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT  138 (337)
T ss_dssp             EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred             EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcc
Confidence            99999999887776321     256689999999 887775            579999999999888877764 45678


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecC----------
Q 006126          461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG----------  528 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~----------  528 (660)
                      +++|+|+|++++++  ++.|.+||+.+++....     +..+..     ...+.|+|+++.+++ + .++          
T Consensus       139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~-----~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  206 (337)
T 1pby_B          139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLVED-----KPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTAR  206 (337)
T ss_dssp             CEEECTTSSCEEEE--SSSEEEEETTTTEEEEE-----ECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred             eeEECCCCCEEEEe--CCeEEEEECCCCcEeee-----eecccc-----CCCceeCCCccEEeeeccCCCceeeeeeccc
Confidence            89999999988887  68999999998654322     111211     112378899887765 2 222          


Q ss_pred             -------------cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126          529 -------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ  595 (660)
Q Consensus       529 -------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~  595 (660)
                                   .|.+||+.+++.. .+....+...+.+++|+|||++++++  ++.|++||+.+++.+..+..     
T Consensus       207 ~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-----  278 (337)
T 1pby_B          207 KDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-----  278 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----
T ss_pred             cccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----
Confidence                         4799999988875 33333346678899999999999988  79999999999988877653     


Q ss_pred             CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCC
Q 006126          596 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP  643 (660)
Q Consensus       596 ~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~  643 (660)
                          ...+.  +++|+| ++++|++++.|+.|++||+.+++.......
T Consensus       279 ----~~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          279 ----PHSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             ----SSCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ----CCcee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence                12234  899999 899999999999999999999887554433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=4.6e-21  Score=196.32  Aligned_cols=278  Identities=9%  Similarity=0.032  Sum_probs=190.8

Q ss_pred             EecCCCCE-EEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCcee
Q 006126          269 TSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS  346 (660)
Q Consensus       269 ~~spdg~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~  346 (660)
                      .|.+++++ +++++.++.|.+||..+    ++.... +..  +...+ +++|+|+|+++++++. ++.|.+||..++...
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----~~~~~~-~~~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDT----LEILNQ-ITL--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTT----CCEEEE-EEC--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcc----cceeee-EEc--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            45566655 67778889999999984    444332 211  45566 9999999998877776 789988887665420


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCC----cEEEEECCCCeEEEEEcCCCCCeEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG----KISIFSLETFQTLATFANPPPIATY  420 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg----~I~iwd~~~~~~~~~~~~~~~~v~~  420 (660)
                                          .....  .+..+..+++|+  +++++++.++    .|.+||+.+++.+..+..+ ....+
T Consensus        76 --------------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~  132 (331)
T 3u4y_A           76 --------------------VVAIQ--EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG  132 (331)
T ss_dssp             --------------------EEEEE--ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred             --------------------EEecc--cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence                                11111  244444458898  7888855533    8999999999988887654 44689


Q ss_pred             EEEcCCC-eEE-EEeCCCe-EEEEeCCCCcee----eEeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeee
Q 006126          421 FILLPQD-LFA-FGFDDSS-ILVHCPCTKKTK----AKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       421 v~~sp~~-~l~-s~~~d~~-I~iwd~~~~~~~----~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~  492 (660)
                      ++|+|+| .++ ++..++. |.+|++.....+    .........+.+++|+|+|++++++ ..++.|.+||+.+++.. 
T Consensus       133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-  211 (331)
T 3u4y_A          133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-  211 (331)
T ss_dssp             EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-
T ss_pred             eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-
Confidence            9999999 554 4456678 999998764332    1222345568999999999966555 46899999999986541 


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCce--eeeecCC--CCC---CCeEEEEEccCCC
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVPD--KMD---LPITYATYSCDGK  563 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~--~~~~~~~--~~~---~~v~~~~~s~dg~  563 (660)
                       ..+..+..+     ..+..++|+|||++++++  .++.|.+||+.+++.  +..+...  .+.   .....++|+|||+
T Consensus       212 -~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  285 (331)
T 3u4y_A          212 -TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET  285 (331)
T ss_dssp             -EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred             -ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence             112212222     467789999999988774  578899999998877  3333221  011   2235689999999


Q ss_pred             EEEEEec-CCeEEEEECCCCee
Q 006126          564 CIYVSCK-SGHVKVFDTSTLEL  584 (660)
Q Consensus       564 ~l~sg~~-dg~I~iwd~~~~~~  584 (660)
                      +|++++. ++.|.+||+.....
T Consensus       286 ~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          286 KLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEEEEETTTTEEEEEETTSCEE
T ss_pred             EEEEecCCCCcEEEEEecCCcc
Confidence            8876655 57999999987653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=3.3e-21  Score=197.48  Aligned_cols=275  Identities=12%  Similarity=0.078  Sum_probs=201.8

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcce-eeeecCCCCCCC-CeEEEEEecCCCEEEEE-ECCCcEEEEeccCCceeeeeec
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGG-RVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQSLEEEN  351 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~-~V~~~~~spdg~~l~s~-s~dg~i~vw~~~~~~~~~~~~~  351 (660)
                      +++++++.++.|.+||..+    .+. ..+.+.   +.. .+.+++|+|+|++++.+ +.++.|.+||..+++....   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---   71 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK----MAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR---   71 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----TEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE---
T ss_pred             cEEEEcCCCCeEEEEECCC----CcEEEEEEcC---CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee---
Confidence            4788999999999999974    333 333221   222 58899999999876554 4578999998876653111   


Q ss_pred             cceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-------------CCcEEEEECCCCeEEEEEcCCCC
Q 006126          352 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANPPP  416 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-------------dg~I~iwd~~~~~~~~~~~~~~~  416 (660)
                             +......        .|...+.+++|+  ++++++++             ++.|.+||+.+++....+.. ..
T Consensus        72 -------~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~  135 (337)
T 1pby_B           72 -------IDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR  135 (337)
T ss_dssp             -------EECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred             -------EEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence                   1100000        012245678898  77888774             58999999999988887764 44


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----------------
Q 006126          417 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----------------  478 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----------------  478 (660)
                      .+.+++|+|+| .++++  ++.|++||+.+++....+..+.. ...+.|+|+++.++..+.++                 
T Consensus       136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 1pby_B          136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence            57788999999 77777  68899999999988877765431 11236899998766544332                 


Q ss_pred             -------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCC
Q 006126          479 -------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL  551 (660)
Q Consensus       479 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  551 (660)
                             .|.+||+.+++.. .  +.  ...+.   ..+.+++|+|+|++++++ ++.|++||+.+++.+..+..   ..
T Consensus       213 ~~~~~~~~v~~~d~~~~~~~-~--~~--~~~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~  280 (337)
T 1pby_B          213 DPTAYRTGLLTMDLETGEMA-M--RE--VRIMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PH  280 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEE-E--EE--EEECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SS
T ss_pred             cccccccceEEEeCCCCCce-E--ee--cCCCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CC
Confidence                   4689999987643 1  11  22333   468899999999999888 89999999999988877754   45


Q ss_pred             CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      .+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus       281 ~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          281 SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            678999999999999999999999999999998888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.3e-20  Score=194.64  Aligned_cols=270  Identities=11%  Similarity=0.021  Sum_probs=200.1

Q ss_pred             eeEecCCCCEEEEEeC-------CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEE
Q 006126          267 ESTSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLW  338 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw  338 (660)
                      .+.++|||+++++++.       ++.|.+||..+   ......+.     +...+..++|+|+|++++.++. ++.|.+|
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIH-----NDLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEE-----ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEe-----cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            3589999999988874       56899999985   22233332     2445788999999997666555 7899999


Q ss_pred             eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcC
Q 006126          339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFAN  413 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~  413 (660)
                      |..+++...          .+....+....    ......+.+++|+  ++++++++   ++.|.+||+.+++....+..
T Consensus       117 d~~~~~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          117 DAKTGEVKG----------RLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             ETTTCCEEE----------EEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred             eCCCCeeEE----------EEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence            887665411          11110000000    0011236889998  77666655   68899999999999988876


Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec----cCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 006126          414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG  487 (660)
Q Consensus       414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~  487 (660)
                      +...+.+++|+|+| .+++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|+++++++. ++.|.+||+.+
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            66668899999999 899999999999999999988877764    4567889999999998777665 48999999998


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI  565 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  565 (660)
                      ++......     .+      ....++|+|+|+++++ + .++.|.+||..+++.+..+..   ...+.+++|+|||++|
T Consensus       263 ~~~~~~~~-----~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          263 GNILAKVA-----AP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTL  328 (353)
T ss_dssp             CCEEEEEE-----CS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEE
T ss_pred             CcEEEEEE-----cC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEE
Confidence            65433222     11      2246999999997776 4 579999999999998888754   4578999999999988


Q ss_pred             EEEecCC
Q 006126          566 YVSCKSG  572 (660)
Q Consensus       566 ~sg~~dg  572 (660)
                      +++..++
T Consensus       329 ~v~~~~~  335 (353)
T 3vgz_A          329 YVSVKQK  335 (353)
T ss_dssp             EEEEECC
T ss_pred             EEEEccc
Confidence            8777664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=6.2e-21  Score=195.92  Aligned_cols=271  Identities=12%  Similarity=0.082  Sum_probs=184.6

Q ss_pred             CEEEEE-ECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C-CcEE
Q 006126          324 DFLVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKIS  398 (660)
Q Consensus       324 ~~l~s~-s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d-g~I~  398 (660)
                      ++++++ +.|+.|.+|++......                  ..+...   .+...+.+++|+  +++|++++ + +.|.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~   63 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGAL------------------TLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVL   63 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCE------------------EEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcE------------------EEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEE
Confidence            344444 67999999998532110                  011111   366678889999  78888888 5 8999


Q ss_pred             EEECC--CCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCC---CCceeeEeeccCCCeEEEEEeCCCC
Q 006126          399 IFSLE--TFQ--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLN  469 (660)
Q Consensus       399 iwd~~--~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~  469 (660)
                      +|++.  +++  .+..+..+. .+.+++|+|++ .+++++ .++.|.+||+.   +++.+..+.. ...+.+++|+|+|+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~  141 (343)
T 1ri6_A           64 AYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNR  141 (343)
T ss_dssp             EEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSS
T ss_pred             EEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCC
Confidence            99997  555  334454444 77899999999 666655 58899999994   3444555543 34588999999999


Q ss_pred             EEEEEe-CCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC--Cce--e
Q 006126          470 VLVSSG-ADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--T  541 (660)
Q Consensus       470 ~l~s~s-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~--~~~--~  541 (660)
                      ++++++ .++.|.+||+.+ ++........ ......   ..+..++|+|+++++++ + .++.|.+||+..  ++.  .
T Consensus       142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~  217 (343)
T 1ri6_A          142 TLWVPALKQDRICLFTVSDDGHLVAQDPAE-VTTVEG---AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  217 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-EECSTT---CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             EEEEecCCCCEEEEEEecCCCceeeecccc-cccCCC---CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence            888877 899999999987 5432111001 111111   46889999999998876 4 678999999953  432  2


Q ss_pred             eeec---CC-CCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECC--CC--eeEEEeecccccCCCCcCcccceEEEEEec
Q 006126          542 SQLV---PD-KMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTS--TL--ELRCQINLTAYAQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       542 ~~~~---~~-~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~--~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp  612 (660)
                      ..+.   .. .....+..++|+|+|++|+++. .++.|++||+.  ++  +.+..+..      +  ..   +.+++|+|
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~------~--~~---~~~~~~s~  286 (343)
T 1ri6_A          218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT------E--TQ---PRGFNVDH  286 (343)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC------S--SS---CCCEEECT
T ss_pred             eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC------C--Cc---cceEEECC
Confidence            2221   11 1134677899999999887544 78999999998  33  33333331      1  22   33899999


Q ss_pred             CCCCEEEEEe-CCCeEEEEeCC
Q 006126          613 LEPNRIALGL-TNGRVHVIEPL  633 (660)
Q Consensus       613 ~d~~~l~s~s-~Dg~v~iw~~~  633 (660)
                       ++++|++++ .|+.|.+|++.
T Consensus       287 -dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          287 -SGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             -TSSEEEEECTTTCEEEEEEEE
T ss_pred             -CCCEEEEecCCCCeEEEEEEc
Confidence             899888877 68999999554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=1.5e-21  Score=222.45  Aligned_cols=284  Identities=13%  Similarity=0.107  Sum_probs=196.5

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC---CeEEEEEe--C
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--G  386 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s--~  386 (660)
                      ..+.+++|+|||+++++ +.||+|++||..+++...          +.+             +|..   .|.+++|+  |
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~----------~~~-------------~~~~~~~~v~~~~~SpDg   72 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV----------LIE-------------GKKIESLRAIRYEISPDR   72 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE----------EEC-------------TTTTTTTTCSEEEECTTS
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE----------Eec-------------cccccccccceEEECCCC
Confidence            45778999999997766 789999999887665311          111             3333   48999999  8


Q ss_pred             CEEEEEe-C---------CcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          387 SHLFSAS-G---------GKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       387 ~~l~s~~-d---------g~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      ++|++++ +         +.|.+||+.+++. +.+.   .+...+..++|+||| .|++++. +.|++||+.+++.....
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A           73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred             CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence            8999887 3         6788999998876 3343   344458899999999 8888876 79999999998877665


Q ss_pred             eccCCCe------------------EEEEEeCCCCEEEEEeCCC----------------------------------cE
Q 006126          453 KGHQNRI------------------TCLAYSLSLNVLVSSGADA----------------------------------QL  480 (660)
Q Consensus       453 ~~~~~~v------------------~~l~~sp~~~~l~s~s~dg----------------------------------~i  480 (660)
                      ..+...+                  .++.|+|||+.|++++.|+                                  .|
T Consensus       151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            5544333                  7899999999999987553                                  79


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e----cCcEEEEeCCCCceeeeecCCCCCCCe--
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTLNHTSQLVPDKMDLPI--  553 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~v--  553 (660)
                      ++||+.+++.............+.   ..+.+++|+|||+++++. .    +..|++||+.+++....+... +...+  
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~  306 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMRE---YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHR  306 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSS---EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCcc---ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEec
Confidence            999998865211110000011122   478899999999988763 2    357999999998876655332 23333  


Q ss_pred             --EEEEEccCCCEEEE--EecCC------eEEEEE-CCCCee--EEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          554 --TYATYSCDGKCIYV--SCKSG------HVKVFD-TSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       554 --~~~~~s~dg~~l~s--g~~dg------~I~iwd-~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                        ..++|+|||+.|+.  +..++      .|++|| ..+++.  ...+..      |  ...+. ..++|+| |++.|+.
T Consensus       307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------~--~~~~~-~~~~~sp-dg~~l~~  376 (723)
T 1xfd_A          307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS------G--DWDVT-KILAYDE-KGNKIYF  376 (723)
T ss_dssp             CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC------S--SSCEE-EEEEEET-TTTEEEE
T ss_pred             cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec------C--CeEEE-eeeEEcC-CCCEEEE
Confidence              37899999997775  44566      577777 444441  222221      2  11121 1369999 8999876


Q ss_pred             EeCC---CeEEEEeCCCC
Q 006126          621 GLTN---GRVHVIEPLES  635 (660)
Q Consensus       621 ~s~D---g~v~iw~~~~~  635 (660)
                      .+.+   +.++||++...
T Consensus       377 ~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          377 LSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EESSSCTTCCEEEEECSS
T ss_pred             EEcCCCCcceEEEEEeCC
Confidence            6655   78999998653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=5.5e-20  Score=189.79  Aligned_cols=273  Identities=13%  Similarity=0.052  Sum_probs=175.3

Q ss_pred             CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEeccCCceeeeeeccceeEEEe
Q 006126          283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLY  359 (660)
Q Consensus       283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      ++.|.+|++...  ++.+..+....  +...+..++|+|||+ |++++.   ++.|.+|++.++..              
T Consensus        15 ~~~i~v~~~d~~--tg~~~~~~~~~--~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--------------   75 (347)
T 3hfq_A           15 SQGIYQGTLDTT--AKTLTNDGLLA--ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--------------   75 (347)
T ss_dssp             CCEEEEEEEETT--TTEEEEEEEEE--ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------------
T ss_pred             CCCEEEEEEcCC--CCeEEEeeeee--ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------------
Confidence            466888887631  24443322222  456788899999999 665554   46777777533321              


Q ss_pred             cCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCe
Q 006126          360 QPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DDSS  437 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~  437 (660)
                                                                    +.+..+..+...+..++|+|+| .|++++ .++.
T Consensus        76 ----------------------------------------------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~  109 (347)
T 3hfq_A           76 ----------------------------------------------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGT  109 (347)
T ss_dssp             ----------------------------------------------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred             ----------------------------------------------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence                                                          1112222334556689999999 777777 7889


Q ss_pred             EEEEeCCC-Cc--eeeEeec---------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCeeeeceeeeeeeeccC
Q 006126          438 ILVHCPCT-KK--TKAKLKG---------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       438 I~iwd~~~-~~--~~~~~~~---------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~  504 (660)
                      |.+|++.. +.  .+..+..         +...+.+++|+|+|+.+++...++.|.+||+. +++.......   .....
T Consensus       110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~---~~~~g  186 (347)
T 3hfq_A          110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL---TMEAG  186 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE---ECCTT
T ss_pred             EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE---EcCCC
Confidence            99999863 32  2333321         12348899999999966666678899999998 4432211111   11111


Q ss_pred             CCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC--Cce--eeeecCCCC----CCCeEEEEEccCCCEEEE-EecCCe
Q 006126          505 PETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQLVPDKM----DLPITYATYSCDGKCIYV-SCKSGH  573 (660)
Q Consensus       505 ~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~--~~~--~~~~~~~~~----~~~v~~~~~s~dg~~l~s-g~~dg~  573 (660)
                         ..+..++|+|||+++++ + .++.|.+|++..  ++.  +..+.....    ...+..++|+|||++|++ +..++.
T Consensus       187 ---~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~  263 (347)
T 3hfq_A          187 ---FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT  263 (347)
T ss_dssp             ---CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred             ---CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence               36788999999998777 4 678999999874  443  222221111    145888999999998854 555899


Q ss_pred             EEEEECCC-C--eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEE--eCCCCce
Q 006126          574 VKVFDTST-L--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVI--EPLESEV  637 (660)
Q Consensus       574 I~iwd~~~-~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw--~~~~~~~  637 (660)
                      |.+|++.. +  +.+..+..+        ...  +..++|+| |+++|++++.+ +.|.+|  |..+++.
T Consensus       264 v~v~~~~~~g~~~~~~~~~~~--------~~~--~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          264 LAVFAVTADGHLTLIQQISTE--------GDF--PRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEEEECGGGCEEEEEEEECS--------SSC--CCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEECCCCcEEEeEEEecC--------CCC--cCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            99999973 2  333333311        222  33899999 89988887754 899999  5555554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.3e-20  Score=188.80  Aligned_cols=252  Identities=9%  Similarity=-0.029  Sum_probs=180.5

Q ss_pred             EeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC-CceeeeeeccceeEEE
Q 006126          280 AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-NKQSLEEENVNMESQL  358 (660)
Q Consensus       280 ~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~-~~~~~~~~~~~~~~~~  358 (660)
                      ++.|++|++||+.+    +....+.  .  |...|.+++|+|+|++|++++ ++.|.+|++.+ +..             
T Consensus        18 ~~~~~~i~~~d~~~----~~~~~~~--~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-------------   75 (297)
T 2ojh_A           18 GSMRSSIEIFNIRT----RKMRVVW--Q--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-------------   75 (297)
T ss_dssp             CCCCEEEEEEETTT----TEEEEEE--E--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-------------
T ss_pred             CCcceeEEEEeCCC----Cceeeec--c--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-------------
Confidence            45789999999974    4444332  1  788999999999999999987 78999998776 433             


Q ss_pred             ecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C--C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE
Q 006126          359 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA  430 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d--g--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~  430 (660)
                              ... ....+...+.+++|+  +++|++++ +  +  .|..|+..+++ ...+..+. .+.+++|+|++ .|+
T Consensus        76 --------~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~  144 (297)
T 2ojh_A           76 --------EKV-DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFT  144 (297)
T ss_dssp             --------EEC-CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEE
T ss_pred             --------eEe-ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEE
Confidence                    111 111234678889999  88888887 3  3  45555555554 34444333 48899999999 655


Q ss_pred             -EEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          431 -FGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       431 -s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                       +++.++.+.+|++.. +.....+..+...+.++.|+|+|+++++++ .++.+++|++....    ..+. ....+.   
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~-~~~~~~---  216 (297)
T 2ojh_A          145 YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVE-RITDSA---  216 (297)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEE-ECCCCS---
T ss_pred             EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcE-EEecCC---
Confidence             788899999998532 233456666888999999999999888766 58999999986311    1122 222333   


Q ss_pred             CCeEEEEEecCCcEEEE-Eec-----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126          508 TIVNHIQFHPDQIHLLS-IHE-----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG  572 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~-~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg  572 (660)
                      ..+.+++|+|+|++|++ +.+           +.|++||+.+++.........|...+.+++|+|+|++|++++.+.
T Consensus       217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            47889999999999988 444           569999998877644333223577889999999999999887764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=7.8e-21  Score=190.35  Aligned_cols=252  Identities=11%  Similarity=0.008  Sum_probs=182.8

Q ss_pred             EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCC-C
Q 006126          329 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-F  405 (660)
Q Consensus       329 ~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~-~  405 (660)
                      ++.|+.|.+||+.+++.                     ....   .|...|.+++|+  +++|++++++.|.+||+.+ +
T Consensus        18 ~~~~~~i~~~d~~~~~~---------------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~   73 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKM---------------------RVVW---QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP   73 (297)
T ss_dssp             CCCCEEEEEEETTTTEE---------------------EEEE---EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCC
T ss_pred             CCcceeEEEEeCCCCce---------------------eeec---cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCC
Confidence            34577888887765543                     2111   477889999999  8899998899999999999 8


Q ss_pred             eEEEEEcCC-CCCeEEEEEcCCC-eEEEEeC--C--CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCC
Q 006126          406 QTLATFANP-PPIATYFILLPQD-LFAFGFD--D--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADA  478 (660)
Q Consensus       406 ~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~--d--~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg  478 (660)
                      +.......+ ...+.+++|+|++ .|++++.  +  ..|..|++.+++ ...+..+ ..+..++|+|+++.++ +++.|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           74 SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETT
T ss_pred             CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCC
Confidence            777666555 3678899999999 8888883  3  355555656554 3444433 3489999999999887 677899


Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC-CCceeeeecCCCCCCCeEE
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY  555 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~  555 (660)
                      .+++|++....    .... ....+.   ..+.+++|+|+|+++++ + .++.+++|++. .+..+..+..  +...+..
T Consensus       152 ~~~l~~~~~~~----~~~~-~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~  221 (297)
T 2ojh_A          152 VFDIYSMDIDS----GVET-RLTHGE---GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWF  221 (297)
T ss_dssp             EEEEEEEETTT----CCEE-ECCCSS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEE
T ss_pred             ceEEEEEECCC----Ccce-EcccCC---CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCC
Confidence            99999864321    1111 122333   57999999999998887 4 47889999876 4555555543  4677889


Q ss_pred             EEEccCCCEEEEEecC-----------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126          556 ATYSCDGKCIYVSCKS-----------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~d-----------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D  624 (660)
                      ++|+|+|++|++++.+           +.|++||+.+++........     +| ...+.  +++|+| ++++|++++.|
T Consensus       222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~-~~~~~--~~~~sp-dg~~l~~~~~~  292 (297)
T 2ojh_A          222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GG-QGTMN--SPNWSP-DGDEFAYVRYF  292 (297)
T ss_dssp             EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ES-TTTSC--SCCBCT-TSSEEEEEEEC
T ss_pred             eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CC-Ccccc--cceECC-CCCEEEEEEec
Confidence            9999999999988776           56999999988765444321     22 33344  799999 89998888766


Q ss_pred             C
Q 006126          625 G  625 (660)
Q Consensus       625 g  625 (660)
                      .
T Consensus       293 ~  293 (297)
T 2ojh_A          293 P  293 (297)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=4.4e-19  Score=184.08  Aligned_cols=286  Identities=12%  Similarity=0.087  Sum_probs=187.8

Q ss_pred             cCCCCEEEEEeC----CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC----CcEEEEeccC
Q 006126          271 LPDADSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQS  342 (660)
Q Consensus       271 spdg~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d----g~i~vw~~~~  342 (660)
                      .+...+++.|+.    ++.|.+|++...  ++.+......   |...+..++|+|||++|++++.+    +.+.+|++..
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~--~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~   84 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEE--TGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK   84 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETT--TCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCC--CCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence            344456666643    568999988531  2334333221   46778889999999999999886    7999998765


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe--CCcEEEEECCCCeEEEEE------cC-
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLATF------AN-  413 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~--dg~I~iwd~~~~~~~~~~------~~-  413 (660)
                      ..                   +.+........+......+++.+++|++++  ++.|.+|++.....+..+      .+ 
T Consensus        85 ~~-------------------g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  145 (361)
T 3scy_A           85 EK-------------------GTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS  145 (361)
T ss_dssp             TT-------------------TEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred             CC-------------------CcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence            31                   111100000023445666666777777776  689999999754322111      11 


Q ss_pred             -------CCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCce------e-------eEeeccCCCeEEEEEeCCCCEE
Q 006126          414 -------PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT------K-------AKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       414 -------~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~------~-------~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                             +...+.+++|+|+| .+++++ .++.|.+|++.....      +       .....+...+..++|+|+|+++
T Consensus       146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l  225 (361)
T 3scy_A          146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA  225 (361)
T ss_dssp             CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence                   12345789999999 565544 588999998875431      1       1122345567899999999988


Q ss_pred             EEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee--cCcEEEEeCC--CCc--eeee
Q 006126          472 VSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH--EGQIDVYEAP--TLN--HTSQ  543 (660)
Q Consensus       472 ~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~--d~~i~iwd~~--~~~--~~~~  543 (660)
                      ++++ .++.|.+||+.++.......+. ....+.   .....++|+|||++|++ ..  ++.|.+|++.  +++  .+..
T Consensus       226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~  301 (361)
T 3scy_A          226 YLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY  301 (361)
T ss_dssp             EEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred             EEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence            7777 6899999999876542222222 111222   35689999999999977 43  5789999985  444  3333


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEE--ECCCCeeEEE
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVF--DTSTLELRCQ  587 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iw--d~~~~~~~~~  587 (660)
                      +..   ...+.+++|+|||++|++++ .++.|.+|  |..++++...
T Consensus       302 ~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          302 QLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             EEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred             ecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence            332   45678999999999998887 56899996  5557765543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.5e-20  Score=213.97  Aligned_cols=322  Identities=11%  Similarity=0.066  Sum_probs=213.8

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCC---CeEEEEEecCCCEEEEEEC---------CCcE
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ---------TATH  335 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~---~V~~~~~spdg~~l~s~s~---------dg~i  335 (660)
                      ..|+|||+++++ +.|++|++||..+    +....+ +..  |..   .|.+++|||||++|++++.         ++.|
T Consensus        21 ~~~s~dg~~~~~-~~d~~i~~~~~~~----g~~~~~-~~~--~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i   92 (719)
T 1z68_A           21 PNWISGQEYLHQ-SADNNIVLYNIET----GQSYTI-LSN--RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY   92 (719)
T ss_dssp             CEESSSSEEEEE-CTTSCEEEEESSS----CCEEEE-ECH--HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cEECCCCeEEEE-cCCCCEEEEEcCC----CcEEEE-Ecc--ccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence            399999965554 4699999999985    444443 211  222   4899999999999999876         5777


Q ss_pred             EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEc-
Q 006126          336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-  412 (660)
Q Consensus       336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~-  412 (660)
                      ++||+.+++                     .+...   .....+..++|+  |+.|+.+.++.|++||+.+++..+... 
T Consensus        93 ~~~d~~~g~---------------------~~~~~---~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~  148 (719)
T 1z68_A           93 YIYDLSNGE---------------------FVRGN---ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN  148 (719)
T ss_dssp             EEEETTTTE---------------------ECCSS---CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC
T ss_pred             EEEECCCCc---------------------cccce---ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC
Confidence            777765553                     21000   112457889999  889999999999999999887654332 


Q ss_pred             CCCCCe-----------------EEEEEcCCC-eEEEEeCCC----------------------------------eEEE
Q 006126          413 NPPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------------------SILV  440 (660)
Q Consensus       413 ~~~~~v-----------------~~v~~sp~~-~l~s~~~d~----------------------------------~I~i  440 (660)
                      ++...+                 .+++|+||| .|++++.|.                                  .|++
T Consensus       149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            222222                 489999999 888877552                                  7899


Q ss_pred             EeCCCCcee--------eEeeccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEE----cCCCeeeeceeeeeeeeccC
Q 006126          441 HCPCTKKTK--------AKLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWD----AVGWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       441 wd~~~~~~~--------~~~~~~~~~v~~l~~sp~~~~l~s~s~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~  504 (660)
                      ||+.+++..        ..+.+|...+..++|+||++++++....    ..|.+||    ..+++....  +.....+|.
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~--~~~~~~~~~  306 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT--QEHIEESRT  306 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG--GEEEEECSS
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE--EecccccCC
Confidence            999988753        2234578889999999998777664432    2488899    777543211  100013444


Q ss_pred             CCCCCeE-----EEEEecCCcEEEE--E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---
Q 006126          505 PETTIVN-----HIQFHPDQIHLLS--I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---  571 (660)
Q Consensus       505 ~~~~~v~-----~~~~sp~~~~l~~--~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---  571 (660)
                         ..+.     .+.|+|||+.++.  + .++  .|++||+.+++ ...+..  +...+..+.++ +++.|+..+.+   
T Consensus       307 ---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d~~~i~~~~~~~~~  379 (719)
T 1z68_A          307 ---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-TQDSLFYSSNEFEE  379 (719)
T ss_dssp             ---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred             ---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-eCCEEEEEEecCCC
Confidence               4555     7899999997654  3 333  68888987766 344433  35567888877 88888776655   


Q ss_pred             --CeEEEEECCC--Cee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EEeCC--CeEEEEeCCCCce
Q 006126          572 --GHVKVFDTST--LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTN--GRVHVIEPLESEV  637 (660)
Q Consensus       572 --g~I~iwd~~~--~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s~D--g~v~iw~~~~~~~  637 (660)
                        +.+++|.+..  +.. ...+...   ..+| ...+.  .+.|+| ++++++ +++.+  ..+.+|++.+++.
T Consensus       380 ~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~-~~~~~--~~~~s~-dg~~l~~~~s~~~~p~~~l~d~~~g~~  446 (719)
T 1z68_A          380 YPGRRNIYRISIGSYPPSKKCVTCH---LRKE-RCQYY--TASFSD-YAKYYALVCYGPGIPISTLHDGRTDQE  446 (719)
T ss_dssp             CTTCBEEEEEECSSSSCCEEESSTT---TTTT-TBCBE--EEEECG-GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred             CCceEEEEEEeCCCCCCCceeccCc---cCCC-CCceE--EEEECC-CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence              7788887754  421 2222210   0112 22233  789999 677666 44443  5789999988764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=1.3e-19  Score=205.92  Aligned_cols=285  Identities=13%  Similarity=0.040  Sum_probs=197.6

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC---
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS---  342 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~---  342 (660)
                      ..+.|||| +.++.+. ++.+++||+.+    +....+.  .  +...+.+++|||||++|+++ .|+.|.+|++.+   
T Consensus        85 ~~~~~spd-~~~~~~~-~~~i~~~d~~~----~~~~~l~--~--~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           85 FRTLDAGR-GLVVLFT-QGGLVGFDMLA----RKVTYLF--D--TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             EEEEETTT-TEEEEEE-TTEEEEEETTT----TEEEEEE--C--CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             eeEEECCC-CeEEEEE-CCEEEEEECCC----CceEEcc--C--CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence            34589999 6666553 59999999974    5554432  1  56778999999999999985 679999999877   


Q ss_pred             --CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C-----------------------
Q 006126          343 --NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----------------------  394 (660)
Q Consensus       343 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d-----------------------  394 (660)
                        ++........... ..+...        ..+.+...+.+++|+  |++|++++ |                       
T Consensus       154 ~~g~~~~~~~~~~~~-~~~g~~--------~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~  224 (706)
T 2z3z_A          154 GMSRAIAVTIDGTET-LVYGQA--------VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY  224 (706)
T ss_dssp             CCCCCEESCSCCBTT-EEESSC--------CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred             cCCCcEEeccCCCCC-eEcccc--------hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence              5431110000000 000000        000122346788999  88888876 2                       


Q ss_pred             ----------CcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceeeEee-c-
Q 006126          395 ----------GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLK-G-  454 (660)
Q Consensus       395 ----------g~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~~~~-~-  454 (660)
                                ..|.+||+.+++......  .+...+.+++|+||| .|++++.++     .|++||+.+++....+. . 
T Consensus       225 y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~  304 (706)
T 2z3z_A          225 YPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET  304 (706)
T ss_dssp             CCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence                      579999999988655443  456778999999999 888877765     89999999984443332 2 


Q ss_pred             cCC---CeEEEEEeC--CCCEEEEEeCCCcEEEEEcC-CCeeeeceeeeeeeeccCCCCCCeEE-EEEecCCcEEEE-E-
Q 006126          455 HQN---RITCLAYSL--SLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-I-  525 (660)
Q Consensus       455 ~~~---~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~-~-  525 (660)
                      +..   .+.++.|+|  ||+++++++.|+.+++|++. ++.     .+. ....+.   ..+.+ ++|+|+|+.|+. + 
T Consensus       305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-----~~~-~l~~~~---~~v~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-----LIR-QVTKGE---WEVTNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-----EEE-ECCCSS---SCEEEEEEECTTSSEEEEEES
T ss_pred             CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-----EEE-ecCCCC---eEEEeeeEEcCCCCEEEEEec
Confidence            222   246789999  99999999999999999876 322     222 122333   45766 799999998877 4 


Q ss_pred             ecC----cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC----CeEEEEECCCCe
Q 006126          526 HEG----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLE  583 (660)
Q Consensus       526 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----g~I~iwd~~~~~  583 (660)
                      .++    .|+.||+.+++ ...+.   +...+.+++|+|||++++.++.+    +.|++||+.+++
T Consensus       376 ~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          376 EASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            333    67888887765 33442   36678999999999998877554    569999999887

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=4.6e-19  Score=188.33  Aligned_cols=311  Identities=13%  Similarity=0.076  Sum_probs=196.3

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ...+..+++++++.++++++.|+ +++|+...............  .+........+      .+...|.+++|+  +++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~v~~l~~spdg~~  106 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN--KIVDKVQGLLV------PMKFPIHHLALSCDNLT  106 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT--CEEECCCCEEE------CCSSCEEEEEECTTSCE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc--cccccCccccc------cCCCcccEEEEcCCCCE
Confidence            45689999999999999999888 88887542211000000000  00000000011      467789999999  888


Q ss_pred             EE----EEe-CCcEEEEECCCC--------eE---EEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceee
Q 006126          389 LF----SAS-GGKISIFSLETF--------QT---LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       389 l~----s~~-dg~I~iwd~~~~--------~~---~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      |+    +++ |+.|++||+.++        +.   ...+.+|...|.+++|+|+ + .|++++.||+|++||++++..+.
T Consensus       107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~  186 (434)
T 2oit_A          107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC  186 (434)
T ss_dssp             EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred             EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence            88    666 899999998764        22   4455678999999999998 5 99999999999999999987777


Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEEecCCcEEEE-E-ec
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLS-I-HE  527 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~-~-~d  527 (660)
                      ...+|...|.+++|+|+|++|++|+.||+|++||++ ++........... ..|.   ..|.+++|++++.++++ + .+
T Consensus       187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~---~~v~~v~w~~~~~~l~~~~~~d  262 (434)
T 2oit_A          187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP---VRVLDVLWIGTYVFAIVYAAAD  262 (434)
T ss_dssp             EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC---EEEEEEEEEETTEEEEEEEETT
T ss_pred             eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc---eeEEEEEEecCceEEEEEccCC
Confidence            777899999999999999999999999999999998 3322111111000 1122   37999999999988876 3 44


Q ss_pred             C------cEEEEeCCCCc-----eeeeecCC-----CCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCe---eEEE
Q 006126          528 G------QIDVYEAPTLN-----HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE---LRCQ  587 (660)
Q Consensus       528 ~------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~---~~~~  587 (660)
                      |      .+++||+++.+     ....+...     ....+-..+.+-++.+++++++. .+.|.|.......   ....
T Consensus       263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~  342 (434)
T 2oit_A          263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL  342 (434)
T ss_dssp             CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred             CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence            3      38999998652     11121110     11223333444477777776655 4556666644311   1111


Q ss_pred             eecc--cccCCCCcCcccceEEEEEe--cCC------------CCEEEEEeCCCeEEEEeCCC
Q 006126          588 INLT--AYAQPGTISLELYPLVIAAH--PLE------------PNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       588 ~~~~--~~~~~gh~~~~v~~~~v~~s--p~d------------~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +...  ...|..-.+...+++.+++.  .++            ...|..-+.||.+..|.+-.
T Consensus       343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            1110  00111101122233333332  111            24678888999999998765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1.7e-19  Score=185.79  Aligned_cols=234  Identities=14%  Similarity=0.022  Sum_probs=177.0

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceeeEeeccC-----
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQ-----  456 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~~~~~~~-----  456 (660)
                      +.++++++ ++.|.+||+.+++.+..+..+. ..+..++|+|+| .+ +++..++.|.+||+.+++.+..+..+.     
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~   90 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV   90 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence            45677777 8999999999999988887443 256789999999 55 555678999999999998887776322     


Q ss_pred             -CCeEEEEEeCCCCEEEEEeCC------------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          457 -NRITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       457 -~~v~~l~~sp~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                       ..+.+++|+|+|+++++++.+            +.|.+||+.+++...  .+. ....+    ..+.+++|+|+|+ ++
T Consensus        91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~-~~~~~----~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--PVR-TFPMP----RQVYLMRAADDGS-LY  162 (349)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--CSE-EEECC----SSCCCEEECTTSC-EE
T ss_pred             cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--eee-eccCC----CcccceeECCCCc-EE
Confidence             237889999999999998865            899999998854221  111 11122    3578899999999 55


Q ss_pred             EEecCcEEEEeCCCCceeeeecCCC-------------------------------------------------------
Q 006126          524 SIHEGQIDVYEAPTLNHTSQLVPDK-------------------------------------------------------  548 (660)
Q Consensus       524 ~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------------------------  548 (660)
                      ++ ++.|++||+.+++.+..+....                                                       
T Consensus       163 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  241 (349)
T 1jmx_B          163 VA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  241 (349)
T ss_dssp             EE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             Ec-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence            53 3459999999988776654321                                                       


Q ss_pred             -----------CCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          549 -----------MDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       549 -----------~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                                 +...+..++|+| ||++++++  ++.|++||+.+++.+..+..         .....  +++|+| +++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~--~~~~s~-dg~  307 (349)
T 1jmx_B          242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYY--CVAFDK-KGD  307 (349)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCC--EEEECS-SSS
T ss_pred             CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCcc--ceEECC-CCC
Confidence                       011345678889 99999988  88999999999998877653         22234  899999 788


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeccCC
Q 006126          617 RIALGLTNGRVHVIEPLESEVEWGKL  642 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~~~~w~~~  642 (660)
                      +|++++.++.|++||+.+++......
T Consensus       308 ~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          308 KLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCeEEEEeccccceeeeee
Confidence            88888889999999999988754443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=7.2e-20  Score=202.99  Aligned_cols=267  Identities=9%  Similarity=0.005  Sum_probs=187.6

Q ss_pred             CCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~  387 (660)
                      +..+|++++|+|||++||+++. ||++.||++.++..                     .+..  .++...+..++|+ ++
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---------------------~~lt--~~~~~~~~~~~~spd~   76 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---------------------VKLN--REPINSVLDPHYGVGR   76 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---------------------EECC--SSCCSEECEECTTCSE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---------------------Eeee--cccccccccccCCCCe
Confidence            3568999999999999999887 99999998644432                     2211  1233578899999 74


Q ss_pred             EEEEEeC----CcEEEEECCC---CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126          388 HLFSASG----GKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  458 (660)
Q Consensus       388 ~l~s~~d----g~I~iwd~~~---~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~  458 (660)
                      .+++++.    ....+|.+..   +... .+... ..+...+|+|+|  .+++.+.++.+.+||+.+++.......+ . 
T Consensus        77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~-  152 (582)
T 3o4h_A           77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G-  152 (582)
T ss_dssp             EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S-
T ss_pred             EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C-
Confidence            5554442    4455654432   3222 33322 234466888887  3444444445559999988765554433 3 


Q ss_pred             eEEEEEeCCCCEEEEEeCC----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEE
Q 006126          459 ITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QID  531 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~  531 (660)
                       .+++|+|||+++++++.+    +.|++||+.+++..       ...+|.   ..+..++|+|||+.|+++ .++  .|+
T Consensus       153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-------~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~  221 (582)
T 3o4h_A          153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-------VFDSGE---GSFSSASISPGMKVTAGLETAREARLV  221 (582)
T ss_dssp             -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-------EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred             -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-------EeecCC---CccccceECCCCCEEEEccCCCeeEEE
Confidence             789999999999988877    78999999886531       123444   578999999999999974 667  899


Q ss_pred             EEeCCCCceeeeecCCCCCCCeEEEE--------EccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126          532 VYEAPTLNHTSQLVPDKMDLPITYAT--------YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL  603 (660)
Q Consensus       532 iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v  603 (660)
                      +||+.+++.. .+.  .+...+..++        |+|||.++++++.||.+++|++  |+.....           ...+
T Consensus       222 ~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------~~~v  285 (582)
T 3o4h_A          222 TVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------QGNH  285 (582)
T ss_dssp             EECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------SSEE
T ss_pred             EEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------CCce
Confidence            9999988876 443  2455566666        9999999999999999999999  6654311           2223


Q ss_pred             ceEEEEEecCCCCEEEEEeCCC---eEEEEeCCC
Q 006126          604 YPLVIAAHPLEPNRIALGLTNG---RVHVIEPLE  634 (660)
Q Consensus       604 ~~~~v~~sp~d~~~l~s~s~Dg---~v~iw~~~~  634 (660)
                      .  +++|+  ++.++++++.+.   .+++|+...
T Consensus       286 ~--~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          286 G--RVVLW--RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             E--EEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             E--EEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            4  88888  578888888774   477777654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=1.3e-19  Score=200.97  Aligned_cols=262  Identities=11%  Similarity=0.020  Sum_probs=187.9

Q ss_pred             eEecCCCCEEEEEeC-CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEeccCC
Q 006126          268 STSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSN  343 (660)
Q Consensus       268 ~~~spdg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~---dg~i~vw~~~~~  343 (660)
                      +.|+|||+.||+++. ||+++||++.    .+...+++  . .+...|..++|||| +.+++++.   +....+|.+.. 
T Consensus        27 ~~~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~lt--~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~-   97 (582)
T 3o4h_A           27 LQGVVDGDKLLVVGFSEGSVNAYLYD----GGETVKLN--R-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT-   97 (582)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEE----TTEEEECC--S-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET-
T ss_pred             eecCCCCCeEEEEEccCCceeEEEEc----CCCcEeee--c-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec-
Confidence            389999999999887 9999999986    35555542  2 13368999999999 77777765   45566765432 


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC--EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS--HLFSASGGKISIFSLETFQTLATFANPPPIAT  419 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~--~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~  419 (660)
                                     |+ ..+.. ...    ....+...+|+  ++  .++++.++.+.+||+.+++..+....+.   .
T Consensus        98 ---------------~~-~g~~~-~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~  153 (582)
T 3o4h_A           98 ---------------SR-PGEEQ-RLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---F  153 (582)
T ss_dssp             ---------------TS-TTCCE-ECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---C
T ss_pred             ---------------cC-CCccc-ccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---c
Confidence                           00 11111 111    11223344555  43  3444446666699999988766554433   7


Q ss_pred             EEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeee
Q 006126          420 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLC  492 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg--~i~vwd~~~~~~~~  492 (660)
                      +++|+||| .|++++.+    +.|++||+.+++.. .+..|.+.+..++|+|||+.|+++..++  .|++||+.+++.. 
T Consensus       154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-  231 (582)
T 3o4h_A          154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-  231 (582)
T ss_dssp             EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred             eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence            89999999 88877776    78999999988754 6777888899999999999999888888  8999999986532 


Q ss_pred             ceeeeeeeeccCCCCCCeEEEE--------EecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK  563 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~  563 (660)
                            ...+|.   ..+..++        |+|||..+++ +.++.+++|++  ++....     ....+.+++|+ +|+
T Consensus       232 ------~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg~  294 (582)
T 3o4h_A          232 ------DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGNHGRVVLW-RGK  294 (582)
T ss_dssp             ------ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSEEEEEEEE-TTE
T ss_pred             ------EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCceEEEEec-CCE
Confidence                  223333   3455555        9999977676 48899999999  665542     24678899999 999


Q ss_pred             EEEEEecCC---eEEEEECCC
Q 006126          564 CIYVSCKSG---HVKVFDTST  581 (660)
Q Consensus       564 ~l~sg~~dg---~I~iwd~~~  581 (660)
                      ++++++.+.   .+++||..+
T Consensus       295 ~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          295 LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEEcCCCCCCeEEEEcCCC
Confidence            999988874   477777654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=7.5e-19  Score=180.85  Aligned_cols=242  Identities=12%  Similarity=0.093  Sum_probs=178.5

Q ss_pred             EEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe
Q 006126          316 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS  393 (660)
Q Consensus       316 ~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~  393 (660)
                      .+++++++.++++++.++.|.+||..+++.                     +..... +....+..++|+  +++++.++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~s~dg~~~~v~~   61 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------YKSCVM-PDKFGPGTAMMAPDNRTAYVLN   61 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-SSCCSSCEEEECTTSSEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------EEEEec-CCCCCCceeEECCCCCEEEEEe
Confidence            356788899999999999999998876643                     111110 121246788898  66665544


Q ss_pred             --CCcEEEEECCCCeEEEEEcCCC------CCeEEEEEcCCC-eEEEEeCC------------CeEEEEeCCCCcee---
Q 006126          394 --GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDD------------SSILVHCPCTKKTK---  449 (660)
Q Consensus       394 --dg~I~iwd~~~~~~~~~~~~~~------~~v~~v~~sp~~-~l~s~~~d------------~~I~iwd~~~~~~~---  449 (660)
                        ++.|.+||+.+++....+....      ..+.+++|+|+| .+++++.+            +.|.+||+.+++..   
T Consensus        62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  141 (349)
T 1jmx_B           62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  141 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence              7899999999999887776332      236789999999 88888765            89999999885433   


Q ss_pred             eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------------------------e----e
Q 006126          450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------------------F----Q  500 (660)
Q Consensus       450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------------------~----~  500 (660)
                      ..+. +...+.+++|+|+|+ +++++  +.|.+||+.+++.........                         .    .
T Consensus       142 ~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          142 RTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             EEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             eecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            3343 344688999999999 55554  349999998876543221110                         0    0


Q ss_pred             ---------------------------------eccCCCCCCeEEEEEec-CCcEEEEEecCcEEEEeCCCCceeeeecC
Q 006126          501 ---------------------------------TGLVPETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       501 ---------------------------------~~~~~~~~~v~~~~~sp-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~  546 (660)
                                                       ..+.   ..+..++|+| +|++++++ ++.|++||+.+++.+..+..
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~  293 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT---ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL  293 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECS---SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEecccccCC---CcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC
Confidence                                             0000   2456788889 99999988 89999999999988877754


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          547 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       547 ~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                         ...+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus       294 ---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          294 ---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             ---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             ---CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence               34577899999999999988899999999999998888764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=2.2e-18  Score=196.39  Aligned_cols=330  Identities=9%  Similarity=0.082  Sum_probs=208.9

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCC-----CeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-----RVVRLIYSHSGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~-----~V~~~~~spdg~~l~s~s~dg~i~vw~~~~  342 (660)
                      +.|+|||++++++  ||+|++||+.+    +.+..+ +..  |..     ....++|||||++|+.++.++.+  |... 
T Consensus        22 ~~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~-~~~--~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--~r~~-   89 (740)
T 4a5s_A           22 LRWISDHEYLYKQ--ENNILVFNAEY----GNSSVF-LEN--STFDEFGHSINDYSISPDGQFILLEYNYVKQ--WRHS-   89 (740)
T ss_dssp             EEECSSSEEEEEE--TTEEEEEETTT----CCEEEE-ECT--TTTTTCCSCCCEEEECTTSSEEEEEEEEEEC--SSSC-
T ss_pred             cEECCCCcEEEEc--CCcEEEEECCC----CceEEE-Eec--hhhhhhcccccceEECCCCCEEEEEECCeee--EEEc-
Confidence            4999999999987  99999999985    444443 333  332     23458899999999999876433  1100 


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEE-cCCCCCe-
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATF-ANPPPIA-  418 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~-~~~~~~v-  418 (660)
                               ....+.+||..++......   .|...+..++|+  |+.||.+.++.|++|++.+++..+.. .++...+ 
T Consensus        90 ---------~~~~~~~~d~~~~~~~~l~---~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~  157 (740)
T 4a5s_A           90 ---------YTASYDIYDLNKRQLITEE---RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIY  157 (740)
T ss_dssp             ---------EEEEEEEEETTTTEECCSS---CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             ---------cceEEEEEECCCCcEEEcc---cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCcccee
Confidence                     0111245555665544322   577789999999  88999999999999999988755422 2322222 


Q ss_pred             ----------------EEEEEcCCC-eEEEEeCCC------------------------------------eEEEEeCCC
Q 006126          419 ----------------TYFILLPQD-LFAFGFDDS------------------------------------SILVHCPCT  445 (660)
Q Consensus       419 ----------------~~v~~sp~~-~l~s~~~d~------------------------------------~I~iwd~~~  445 (660)
                                      ..+.||||| .|+.++.|.                                    .|++||+.+
T Consensus       158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~  237 (740)
T 4a5s_A          158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS  237 (740)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred             cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence                            348999999 888765321                                    588899988


Q ss_pred             ---Cc--eeeEee------ccCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCe----eeeceeeeeeeeccCCC
Q 006126          446 ---KK--TKAKLK------GHQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWK----KLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       446 ---~~--~~~~~~------~~~~~v~~l~~sp~~~~l~s~s~----dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~  506 (660)
                         ++  ....+.      +|...+..++|+|||+.++....    +..|++||+.+++    +.....+  ...++.  
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l--~~~~~~--  313 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH--IEMSTT--  313 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE--EEECSS--
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe--eeccCC--
Confidence               73  223333      37778999999999997665543    3479999999875    2111111  113333  


Q ss_pred             CCCeE-----EEEEecCCcEEE-E-E-ec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----
Q 006126          507 TTIVN-----HIQFHPDQIHLL-S-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----  571 (660)
Q Consensus       507 ~~~v~-----~~~~sp~~~~l~-~-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----  571 (660)
                       ..+.     .+.|+|||+.++ . + .+  ..|++||+.++... .+...  ...+..+. .+|++.|+..+..     
T Consensus       314 -~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g--~~~v~~~~-~~d~~~i~f~~~~~~~~~  388 (740)
T 4a5s_A          314 -GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKG--TWEVIGIE-ALTSDYLYYISNEYKGMP  388 (740)
T ss_dssp             -SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCS--SSCEEEEE-EECSSEEEEEESCGGGCT
T ss_pred             -ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccC--CEEEEEEE-EEeCCEEEEEEecCCCCC
Confidence             3443     788999999887 4 4 33  46999999766654 34321  45565544 2457666654433     


Q ss_pred             C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC---CeEEEEeCCCCce
Q 006126          572 G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESEV  637 (660)
Q Consensus       572 g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D---g~v~iw~~~~~~~  637 (660)
                      +  .|+..++..+.....+....   .+. ....+  .+.|+| ++.+++.....   ..+.+++..+++.
T Consensus       389 ~~~~ly~v~~~g~~~~~~lt~~~---~~~-~~~~~--~~~~S~-dg~~~~~~~s~~~~p~~~l~~~~~~~~  452 (740)
T 4a5s_A          389 GGRNLYKIQLIDYTKVTCLSCEL---NPE-RCQYY--SVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDKG  452 (740)
T ss_dssp             TCBEEEEEETTEEEEEEESSTTT---STT-TBCBE--EEEECT-TSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred             ceeEEEEEECCCCCcceeecccc---CCC-CCceE--EEEECC-CCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence            2  45555665554332333110   011 12233  899999 78876654433   4678888876653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=1.9e-18  Score=183.51  Aligned_cols=253  Identities=7%  Similarity=-0.021  Sum_probs=168.2

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCC-------cceeeeec-CCCCCCCCeEEEEEecCCCEEE----EEECCC
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEP-------SECRTLLL-PDNSFGGRVVRLIYSHSGDFLV----ALTQTA  333 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~l-~~~~h~~~V~~~~~spdg~~l~----s~s~dg  333 (660)
                      ..+++++++.++++++.|+ +++|+.......       ........ ....|...|.+++|+|+|++|+    +++.|+
T Consensus        40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~  118 (434)
T 2oit_A           40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS  118 (434)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred             cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence            3358999999999999988 899876521100       01110000 0011567899999999999999    788899


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLA  409 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~  409 (660)
                      .|+|||+.+.....           .... ..........+|...|.+++|+   +.+|++++ ||+|++||+.++....
T Consensus       119 ~v~iwd~~~~~~~~-----------~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~  186 (434)
T 2oit_A          119 IIAFFDVRTFSNEA-----------KQQK-RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC  186 (434)
T ss_dssp             EEEEEEHHHHHCTT-----------CSSC-CCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred             eEEEEEccccccCC-----------cCCc-ceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence            99999986541000           0000 0000001112689999999999   57899999 9999999999998777


Q ss_pred             EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-------CCCeEEEEEeCCCCEEEEE-eCCC--
Q 006126          410 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------QNRITCLAYSLSLNVLVSS-GADA--  478 (660)
Q Consensus       410 ~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~s~-s~dg--  478 (660)
                      ...+|...|.+++|+|+| +|++|+.||.|++||++ ++....+..|       ...|.++.|++++.++++. +.||  
T Consensus       187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            777888999999999999 99999999999999998 5655555443       2379999999988777543 3443  


Q ss_pred             ----cEEEEEcCCCeeeeceeeee---e-e--eccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeC
Q 006126          479 ----QLCVWDAVGWKKLCSKFLHS---F-Q--TGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA  535 (660)
Q Consensus       479 ----~i~vwd~~~~~~~~~~~~~~---~-~--~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~  535 (660)
                          .+++||++............   . +  .+..   .+...+.+.++.+++++ + ..+.|.++..
T Consensus       266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTER---QHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSS---CCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCc---CcceeeehhccCCEEEEecCCCCceeEEEe
Confidence                38999998642110111110   0 0  0111   23334445577777776 3 4455666654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=3.6e-18  Score=178.84  Aligned_cols=293  Identities=12%  Similarity=0.029  Sum_probs=188.1

Q ss_pred             CCCCeEE-----EEEecCCCEEEEEEC-CCc--EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE
Q 006126          310 FGGRVVR-----LIYSHSGDFLVALTQ-TAT--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC  381 (660)
Q Consensus       310 h~~~V~~-----~~~spdg~~l~s~s~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  381 (660)
                      |......     .+|||||++|+.++. +|.  |.+|+..                     ++.......  ++...+..
T Consensus        29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---------------------~g~~~~lt~--~~~~~~~~   85 (388)
T 3pe7_A           29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN---------------------TQVATQLTE--GRGDNTFG   85 (388)
T ss_dssp             TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT---------------------TCEEEECCC--SSCBCSSS
T ss_pred             CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC---------------------CCceEEeee--CCCCCccc
Confidence            4444554     889999999999988 675  4444443                     343333221  34444556


Q ss_pred             EEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE--EcCCC-eEEEE----------------------e
Q 006126          382 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI--LLPQD-LFAFG----------------------F  433 (660)
Q Consensus       382 v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~--~sp~~-~l~s~----------------------~  433 (660)
                      +.|+  ++.|+.++ ++.|++||+.+++....+..+...+....  ++|++ .++..                      .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            6798  88999998 78999999999988777766666554444  48999 66532                      2


Q ss_pred             CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126          434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                      .+..|++||+.+++.. .+..+...+..+.|+| ||+.|+.++.+      ..|.++|..++..   ..   +...+.. 
T Consensus       166 ~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~~~~~~-  237 (388)
T 3pe7_A          166 PCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---RK---VKTHAEG-  237 (388)
T ss_dssp             CCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---EE---SCCCCTT-
T ss_pred             CcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---EE---eeeCCCC-
Confidence            3468999999988654 4445677899999999 99999887764      3788888876431   11   2222210 


Q ss_pred             CCCeEEEEEecCCcEEEE-Ee-cC----cEEEEeCCCCceeeeecCCCCC---CCeEEEEEccCCCEEEEE---------
Q 006126          507 TTIVNHIQFHPDQIHLLS-IH-EG----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVS---------  568 (660)
Q Consensus       507 ~~~v~~~~~sp~~~~l~~-~~-d~----~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~sg---------  568 (660)
                       ..+..++|+|||+.|+. +. ++    .|++||+.+++.........+.   ......+|+|||+.|+..         
T Consensus       238 -~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  316 (388)
T 3pe7_A          238 -ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI  316 (388)
T ss_dssp             -EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred             -cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence             24778899999998866 42 22    3999999988753322211100   001123799999988854         


Q ss_pred             ecCCeEEEEECCCCeeEEEeeccccc---CCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCcee
Q 006126          569 CKSGHVKVFDTSTLELRCQINLTAYA---QPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVE  638 (660)
Q Consensus       569 ~~dg~I~iwd~~~~~~~~~~~~~~~~---~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~~~~~~~  638 (660)
                      ..+..|++||+.+++...... +...   ..+  .....+..++|+| ||+.|+.++ .+|...||.+.-.+..
T Consensus       317 ~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~--~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~l~~~~  386 (388)
T 3pe7_A          317 ENDPFLYVFNMKNGTQHRVAR-HDTSWKVFEG--DRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLATLPESV  386 (388)
T ss_dssp             CCCCEEEEEETTTTEEEEEEE-CCCCCCCBTT--BSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred             CCCCEEEEEeccCCceEEecc-ccCccccccc--ccccCCCCccCCC-CCCEEEEEecCCCceeEEEEECChhc
Confidence            446789999999987644322 1100   000  0001234789999 898887666 5777777776544433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=5.1e-18  Score=174.97  Aligned_cols=260  Identities=8%  Similarity=-0.015  Sum_probs=169.7

Q ss_pred             eeEecCCCCEEEEEeC---CCcEEEEeccCcCCCcceeeee-cCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEecc
Q 006126          267 ESTSLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQ  341 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~  341 (660)
                      .+.|+|||+ +++++.   ++.|.+|++.+    +....+. +..  |...+..++|+|||++|++++ .++.+.+|++.
T Consensus        44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~----g~~~~~~~~~~--~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDG----QTAHKLNTVVA--PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             CEEECTTCE-EEEEEEETTEEEEEEEEEET----TEEEEEEEEEE--ESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eEEEccCCe-EEEEEecCCCceEEEEEecC----CcEEEeeeeec--CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            359999999 555544   68999999963    3332221 111  567889999999999999888 57899999875


Q ss_pred             CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126          342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYF  421 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v  421 (660)
                      ......                  .+..                              .........  .......+.++
T Consensus       117 ~~g~~~------------------~~~~------------------------------~~~~~~~p~--~~~~~~~~~~~  146 (347)
T 3hfq_A          117 ADGALT------------------LTDT------------------------------VQHSGHGPR--PEQDGSHIHYT  146 (347)
T ss_dssp             TTSCEE------------------EEEE------------------------------EECCCCCSS--TTCSSCCEEEE
T ss_pred             CCCCee------------------ecce------------------------------eecCCCCCC--ccccCCCceEE
Confidence            321100                  0000                              000000000  01123457889


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCC-CCceee--Eeec-cCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC--Ceeeec
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPC-TKKTKA--KLKG-HQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCS  493 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~-~~~~~~--~~~~-~~~~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~--~~~~~~  493 (660)
                      +|+|+| .++++..++.|.+|++. +++...  .+.. ....+..++|+|||+++++ ...++.|.+|++..  ++....
T Consensus       147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence            999999 88888889999999998 554332  2222 2336788999999997665 45688999999874  432211


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC-C--ceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-L--NHTSQLVPDKMDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~-~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg  568 (660)
                      ..+.....+.. ....+..++|+|||++|++ + .++.|.+||+.. +  +.+..+..  +...+..++|+|||++|+++
T Consensus       227 ~~~~~~~~~~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          227 GIVKTIPADYT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             EEEESSCTTCC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEE
T ss_pred             eeeeecCCCCC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEE
Confidence            11211111100 0024888999999998866 3 578999999973 2  34444433  35567899999999999888


Q ss_pred             ecC-CeEEEE--ECCCCeeEE
Q 006126          569 CKS-GHVKVF--DTSTLELRC  586 (660)
Q Consensus       569 ~~d-g~I~iw--d~~~~~~~~  586 (660)
                      +.+ +.|.+|  |..++++..
T Consensus       304 ~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          304 NQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             ETTTTEEEEEEECTTTCCEEE
T ss_pred             EcCCCcEEEEEEeCCCCeEEe
Confidence            765 899999  556777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=3.8e-17  Score=169.43  Aligned_cols=248  Identities=14%  Similarity=0.109  Sum_probs=164.1

Q ss_pred             CCCCeEEEEEe--CCEEEEEe-C----CcEEEEECCC--CeE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEE
Q 006126          375 PKDSISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVH  441 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~-d----g~I~iwd~~~--~~~--~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iw  441 (660)
                      +...+..++|+  +++|++++ +    +.|.+|++..  ++.  +.....+......+++  ++ .+++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            44556778999  88888888 4    6999998865  443  3334445556677777  66 555555 68899999


Q ss_pred             eCCCCceeeEe------ec--------cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCee------eece-eeeee
Q 006126          442 CPCTKKTKAKL------KG--------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK------LCSK-FLHSF  499 (660)
Q Consensus       442 d~~~~~~~~~~------~~--------~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~------~~~~-~~~~~  499 (660)
                      ++.....+..+      .+        +...+.+++|+|+|+++++++ .++.|.+|++.....      .... .....
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754332211      11        123458899999999776655 478999999876431      1100 00101


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce--eeeecC-CCCCCCeEEEEEccCCCEEEEEecC--C
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH--TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--G  572 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~--~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~d--g  572 (660)
                      ...+.   ..+..++|+|||+++++ + .++.|.+||+.+++.  +..+.. ..+......++|+|||++|+++..+  +
T Consensus       206 ~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          206 KVAPG---SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             ECCTT---CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             ecCCC---CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence            11222   46789999999998887 4 578999999987654  222221 1234557899999999999776664  8


Q ss_pred             eEEEEECC--CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEEEEeC--CCCce
Q 006126          573 HVKVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEP--LESEV  637 (660)
Q Consensus       573 ~I~iwd~~--~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~--~~~~~  637 (660)
                      .|.+|++.  +++........     .  ..  .+.+++|+| |+++|++++ .++.|.+|++  .+++.
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~-----~--g~--~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQL-----T--GI--HPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEE-----C--SS--CCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEEEcCCCCcEEEeeEec-----C--CC--CCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            99999996  45533222111     0  11  233899999 899888887 6789999655  45554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=5.8e-18  Score=177.24  Aligned_cols=272  Identities=13%  Similarity=0.052  Sum_probs=176.2

Q ss_pred             EecCCCCEEEEEeC-CCc--EEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          269 TSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       269 ~~spdg~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .|||||++|++++. +|.  |.+||+.+    +....+.   .+|...+..++|+|||++|+.++.++.+.+||+.+++.
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~----g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~  114 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNT----QVATQLT---EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE  114 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTT----CEEEECC---CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCC----CceEEee---eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            89999999999987 674  77778763    5555432   12455555788999999999999999999999887654


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE--e--CCEEEEE----------------------e-CCcEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA----------------------S-GGKIS  398 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s--~~~l~s~----------------------~-dg~I~  398 (660)
                      ..          ++.             .+...+....|  +  +.+++..                      . +..|.
T Consensus       115 ~~----------~~~-------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (388)
T 3pe7_A          115 NV----------VYQ-------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM  171 (388)
T ss_dssp             EE----------EEE-------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred             ee----------eee-------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence            21          111             12333333333  3  5555432                      1 36799


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCC------CeEEEEeCCCCceeeEeeccC--CCeEEEEEeCCC
Q 006126          399 IFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSL  468 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d------~~I~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~  468 (660)
                      +||+.+++.... ..+...+..+.|+| || .|+.+..+      ..|.++|+.++.. ..+..+.  ..+..+.|+|||
T Consensus       172 ~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          172 RVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             EEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTS
T ss_pred             EEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCC
Confidence            999999875443 34556788999999 99 77766653      3788888876543 3444443  357788999999


Q ss_pred             CEEEEEeCC-C----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE----------ecCcEEEE
Q 006126          469 NVLVSSGAD-A----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDVY  533 (660)
Q Consensus       469 ~~l~s~s~d-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----------~d~~i~iw  533 (660)
                      +.|+..+.+ +    .|++||+.+++...   +. ...++.........+.|+|||+.|+..          .+..|++|
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---l~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQ---LT-SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEE---EE-EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEE---EE-cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence            987665432 2    39999999876321   11 111100000001124799999988862          24589999


Q ss_pred             eCCCCceeeeecCCCCCC-----------CeEEEEEccCCCEEEEEec-CCeEEEEEC
Q 006126          534 EAPTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGHVKVFDT  579 (660)
Q Consensus       534 d~~~~~~~~~~~~~~~~~-----------~v~~~~~s~dg~~l~sg~~-dg~I~iwd~  579 (660)
                      |+.+++.. .+..  +..           .+.+++|+|||+.|+..+. +|...||.+
T Consensus       326 d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          326 NMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            99887653 3332  233           4778899999998887664 565555543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=9.3e-17  Score=166.87  Aligned_cols=279  Identities=7%  Similarity=0.003  Sum_probs=179.3

Q ss_pred             EEEEeCC--CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc-CCceeeeeeccc
Q 006126          277 AVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-SNKQSLEEENVN  353 (660)
Q Consensus       277 l~s~~~d--g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~-~~~~~~~~~~~~  353 (660)
                      ++.|+..  +.|.+|++...  ++.+..+.....++...+..++|+|||++|++++.+ .|.+|++. +++...      
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~--~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------   75 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDE--KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------   75 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETT--TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE------
T ss_pred             EEEEEccCCCcEEEEEEECC--CCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE------
Confidence            4555543  56887776421  234433221101134578899999999999999888 89999976 443210      


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE--EEEE--------------eCCcEEEEECC-CCeEEEEEc--
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA--  412 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~--l~s~--------------~dg~I~iwd~~-~~~~~~~~~--  412 (660)
                          +....           .+ +.+.+++|+  |++  ++++              .+|.+.+|++. +++....+.  
T Consensus        76 ----~~~~~-----------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~  139 (365)
T 1jof_A           76 ----EASHP-----------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY  139 (365)
T ss_dssp             ----EEEEE-----------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred             ----eeEee-----------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence                00000           01 113345666  553  3333              36889999997 466554443  


Q ss_pred             --CCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCC-CCcee--eEee--ccCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 006126          413 --NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCV  482 (660)
Q Consensus       413 --~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~-~~~~~--~~~~--~~~~~v~~l~~sp~~~~l~s~s~-dg~i~v  482 (660)
                        .+...+.+++|+||| .++++. .++.|++||+. +++..  ..+.  .|...+..++|+|+|+++++++. ++.|.+
T Consensus       140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v  219 (365)
T 1jof_A          140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence              245678999999999 777665 46799999998 67653  2333  24567899999999999888775 689999


Q ss_pred             EEcC--CCeeee-ceeeeeeee---ccCCCCC------CeEEEE-EecCCcEEEEE-e-cC-----cEEEEeCC-CCcee
Q 006126          483 WDAV--GWKKLC-SKFLHSFQT---GLVPETT------IVNHIQ-FHPDQIHLLSI-H-EG-----QIDVYEAP-TLNHT  541 (660)
Q Consensus       483 wd~~--~~~~~~-~~~~~~~~~---~~~~~~~------~v~~~~-~sp~~~~l~~~-~-d~-----~i~iwd~~-~~~~~  541 (660)
                      |++.  +++... ...+..+..   ++.   .      .+..++ |+|||++|+++ . ++     .|.+|++. +++..
T Consensus       220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          220 YVIDPATHMPVYTHHSFPLIPPGIPDRD---PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBC---TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             EEEeCCCCcEEEccceEEcCCCCcCCcc---cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            9875  443211 011221111   111   1      478999 99999998874 3 33     89999996 56654


Q ss_pred             eeec-CCCCCCCeEEEEEcc---CCCEEEEEecC-CeEEEEECCCCe
Q 006126          542 SQLV-PDKMDLPITYATYSC---DGKCIYVSCKS-GHVKVFDTSTLE  583 (660)
Q Consensus       542 ~~~~-~~~~~~~v~~~~~s~---dg~~l~sg~~d-g~I~iwd~~~~~  583 (660)
                      .... ...+...+..++|+|   ||++|++++.+ +.|.+|++....
T Consensus       297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            3111 111234566789999   89999998875 899999998763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=8.6e-17  Score=167.09  Aligned_cols=247  Identities=13%  Similarity=0.088  Sum_probs=167.4

Q ss_pred             CCCeEEEEEe--CCEEEEEeCCcEEEEECC-CCeEEEEEcC-CCCCeEEEEEcCCC-e-E-EEEe-------------CC
Q 006126          376 KDSISCFALR--GSHLFSASGGKISIFSLE-TFQTLATFAN-PPPIATYFILLPQD-L-F-AFGF-------------DD  435 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s~~dg~I~iwd~~-~~~~~~~~~~-~~~~v~~v~~sp~~-~-l-~s~~-------------~d  435 (660)
                      ...+..++|+  +++|++++.+.|.+|++. +++....... ......+++|+|+| . + +++.             .+
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            3457789999  788888883399999997 7876544321 11235568999999 5 3 3442             68


Q ss_pred             CeEEEEeCC-CCceeeEee----ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC-CCeeeeceeeeeeee-ccCCCC
Q 006126          436 SSILVHCPC-TKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAV-GWKKLCSKFLHSFQT-GLVPET  507 (660)
Q Consensus       436 ~~I~iwd~~-~~~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~  507 (660)
                      +.+.+|++. +++....+.    .+...+.+++|+|||+++++++. ++.|++||+. +++...   +..... .+.   
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~~g---  192 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL---VGSVDAPDPG---  192 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE---EEEEECSSTT---
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE---eeeEecCCCC---
Confidence            999999997 466544443    24567999999999998887664 6799999998 654321   111111 122   


Q ss_pred             CCeEEEEEecCCcEEEEE--ecCcEEEEeCC--CCcee---eeec---CC--CCCC------CeEEEE-EccCCCEEEEE
Q 006126          508 TIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT---SQLV---PD--KMDL------PITYAT-YSCDGKCIYVS  568 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~--~~~~~---~~~~---~~--~~~~------~v~~~~-~s~dg~~l~sg  568 (660)
                      ..+..++|+|||++++++  .++.|.+|++.  +++..   ..+.   ..  .+..      .+..++ |+|||++|+++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~  272 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence            468899999999999874  46899999765  56542   1221   11  0111      488999 99999998877


Q ss_pred             ecC-C-----eEEEEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecC--CCCEEEEEeCC-CeEEEEeCCCC
Q 006126          569 CKS-G-----HVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTN-GRVHVIEPLES  635 (660)
Q Consensus       569 ~~d-g-----~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~--d~~~l~s~s~D-g~v~iw~~~~~  635 (660)
                      ..+ +     .|.+|++. ++++........    .+ .....  .++|+|.  ||++|++++.+ ++|.||++...
T Consensus       273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSP----TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEE----CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCCeEEEEEECCCCCEEEeeeeee----cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            653 2     89999996 676543221000    01 11233  6889995  58999988864 89999998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=1.1e-17  Score=190.29  Aligned_cols=288  Identities=12%  Similarity=-0.009  Sum_probs=191.9

Q ss_pred             eeEecCCCCEEEEEeC---------CCcEEEEeccCcCCCcceee-eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 006126          267 ESTSLPDADSAVCAKS---------LEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK  336 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~-~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~  336 (660)
                      ...|||||++|++++.         +++|++||+.+    +.... ..+     ...+..++|||||++|++++ ++.|+
T Consensus        64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----g~~~~~~~l-----~~~~~~~~~SPDG~~la~~~-~~~i~  133 (719)
T 1z68_A           64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----GEFVRGNEL-----PRPIQYLCWSPVGSKLAYVY-QNNIY  133 (719)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----TEECCSSCC-----CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred             eEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----Cccccceec-----CcccccceECCCCCEEEEEE-CCeEE
Confidence            3599999999999876         78999999984    44410 112     35688999999999999886 78999


Q ss_pred             EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCC---------eEEEEEe--CCEEEEEe-CC---------
Q 006126          337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS---------ISCFALR--GSHLFSAS-GG---------  395 (660)
Q Consensus       337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~v~~s--~~~l~s~~-dg---------  395 (660)
                      +|++.++......         .+........     |+...         ..+++|+  |++|++++ |.         
T Consensus       134 ~~~~~~g~~~~l~---------~~~~~~~v~~-----g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          134 LKQRPGDPPFQIT---------FNGRENKIFN-----GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             EESSTTSCCEECC---------CCCBTTTEEE-----SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCCcEEEe---------cCCCcCCeEc-----ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence            9988766541110         0000000000     23222         2588999  88999887 42         


Q ss_pred             -------------------------cEEEEECCCCeEE---E-----EEcCCCCCeEEEEEcCCC-eEEEEeCC----Ce
Q 006126          396 -------------------------KISIFSLETFQTL---A-----TFANPPPIATYFILLPQD-LFAFGFDD----SS  437 (660)
Q Consensus       396 -------------------------~I~iwd~~~~~~~---~-----~~~~~~~~v~~v~~sp~~-~l~s~~~d----~~  437 (660)
                                               .|++||+.+++..   .     .+..+...+..++|+||+ .+++....    ..
T Consensus       200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~  279 (719)
T 1z68_A          200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV  279 (719)
T ss_dssp             ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred             ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence                                     7889999987653   1     123577788999999999 66664432    25


Q ss_pred             EEEEe----CCCCceeeEe----eccCCCeE-----EEEEeCCCCEEEE--EeCCC--cEEEEEcCCCeeeeceeeeeee
Q 006126          438 ILVHC----PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       438 I~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~sp~~~~l~s--~s~dg--~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      |.+||    +.+++....+    .+|...+.     .+.|+|||+.++.  ...+|  .|.+||+.+++      .. ..
T Consensus       280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~------~~-~l  352 (719)
T 1z68_A          280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN------AI-QI  352 (719)
T ss_dssp             EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT------CE-EC
T ss_pred             EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc------eE-ec
Confidence            88999    8888776665    46777776     8899999996554  44555  46777776643      11 11


Q ss_pred             eccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEEEeCCC--Cc-eeeeecC--CCCCCCeEEEEEccCCCEEEEE-
Q 006126          501 TGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVYEAPT--LN-HTSQLVP--DKMDLPITYATYSCDGKCIYVS-  568 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~iwd~~~--~~-~~~~~~~--~~~~~~v~~~~~s~dg~~l~sg-  568 (660)
                      ..+.   ..+..+.++ +++.++. +.+     +..++|.+..  +. ....+..  ..+...+..+.|+|||++++.. 
T Consensus       353 t~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~  428 (719)
T 1z68_A          353 TSGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC  428 (719)
T ss_dssp             SCSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred             ccCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence            2222   457777878 8888877 543     6788887653  32 1233321  1135678889999999877754 


Q ss_pred             ecC--CeEEEEECCCCeeEEEee
Q 006126          569 CKS--GHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       569 ~~d--g~I~iwd~~~~~~~~~~~  589 (660)
                      +.+  ..+++||+.+++....+.
T Consensus       429 s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          429 YGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             CCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCCCCeEEEEECCCCCEEEEee
Confidence            333  578999998888665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=1.3e-16  Score=181.87  Aligned_cols=251  Identities=12%  Similarity=0.129  Sum_probs=167.7

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ......++|+|||++++++  ||.|++|++.+++..          .+....+..        .+......+.|+  |++
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~~~~Spdg~~   75 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS----------VFLENSTFD--------EFGHSINDYSISPDGQF   75 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE----------EEECTTTTT--------TCCSCCCEEEECTTSSE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceE----------EEEechhhh--------hhcccccceEECCCCCE
Confidence            4456789999999988886  999999998877641          111111000        111223457888  888


Q ss_pred             EEEEe-C---------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccC
Q 006126          389 LFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQ  456 (660)
Q Consensus       389 l~s~~-d---------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~  456 (660)
                      |+.++ +         +.+.+||+.+++..+ +..+...+..++||||| .|+.+. |+.|++||+.+++..+. ..++.
T Consensus        76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~  153 (740)
T 4a5s_A           76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE  153 (740)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred             EEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc
Confidence            88888 4         567899999988653 66677889999999999 888874 78999999988875432 22333


Q ss_pred             CCe-----------------EEEEEeCCCCEEEEEeCCC------------------------------------cEEEE
Q 006126          457 NRI-----------------TCLAYSLSLNVLVSSGADA------------------------------------QLCVW  483 (660)
Q Consensus       457 ~~v-----------------~~l~~sp~~~~l~s~s~dg------------------------------------~i~vw  483 (660)
                      ..+                 ..+.|||||+.|+.++.|.                                    +|++|
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            222                 3588999999999876432                                    47778


Q ss_pred             EcCC---Ceeeeceeeee--eeeccCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCc----ee--eeecCC
Q 006126          484 DAVG---WKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLN----HT--SQLVPD  547 (660)
Q Consensus       484 d~~~---~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~-~~----d~~i~iwd~~~~~----~~--~~~~~~  547 (660)
                      |+.+   ++......+..  ...++.   ..+..++|+|||+.++. ..    +..|++||+.+++    +.  ..+...
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~  310 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPASMLIGD---HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM  310 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHHHHTSC---EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred             ECCCCCCCCcceEEEecCCccCCCCC---eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence            8877   52111111110  001244   57889999999997766 32    2369999999887    32  222111


Q ss_pred             CCCCCeE-----EEEEccCCCEEE-EEec-C--CeEEEEECCCCeeEE
Q 006126          548 KMDLPIT-----YATYSCDGKCIY-VSCK-S--GHVKVFDTSTLELRC  586 (660)
Q Consensus       548 ~~~~~v~-----~~~~s~dg~~l~-sg~~-d--g~I~iwd~~~~~~~~  586 (660)
                      .+...+.     ..+|+|||+.++ ..+. +  ..|++||+.+++...
T Consensus       311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence            2343333     688999999877 6654 3  468899998876554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=6.4e-16  Score=160.01  Aligned_cols=297  Identities=15%  Similarity=0.116  Sum_probs=197.6

Q ss_pred             CCCCEEEEEe------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcE
Q 006126          272 PDADSAVCAK------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH  335 (660)
Q Consensus       272 pdg~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg~i  335 (660)
                      +++++++...      .|+.|.+||..+    ++... +++.  +..+  .++|+|||++++++..          ++.|
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t----~~~~~-~i~~--g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v   83 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTN----GKFLG-MVPT--AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV   83 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTT----CCEEE-EEEC--CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCC----CeEEE-EecC--CCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence            4666666554      367999999874    33332 2332  3333  8999999999998863          5678


Q ss_pred             EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEE
Q 006126          336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLAT  410 (660)
Q Consensus       336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~  410 (660)
                      .+||..+.+....          .....+..       .+......++++  |++|++++   ++.|.+||+.+++.+..
T Consensus        84 ~v~d~~t~~~~~~----------i~~~~~~~-------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           84 EVWDADKLTFEKE----------ISLPPKRV-------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             EEEETTTCCEEEE----------EEECTTBC-------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             EEEECcCCcEEEE----------EEcCcccc-------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            8888765543111          00000000       123446678888  88888876   37899999999998887


Q ss_pred             -EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-Cceee------EeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          411 -FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKA------KLKGHQNRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       411 -~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~------~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                       +...  ....+.+.|++  .+++.+.||.+.+|+... ++...      .+..+..++ .+.++|++..++..+.++.+
T Consensus       147 ~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v  223 (361)
T 2oiz_A          147 VTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNV  223 (361)
T ss_dssp             EGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEE
T ss_pred             EecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeE
Confidence             5432  22336678877  788889999999999865 55441      222222222 23346788888888899999


Q ss_pred             EEEEcCCCeeeeceeeeeeee------ccCCCCCCeEEEEEecCCcEEEEE-e-----------cCcEEEEeCCCCceee
Q 006126          481 CVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQIHLLSI-H-----------EGQIDVYEAPTLNHTS  542 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~~-~-----------d~~i~iwd~~~~~~~~  542 (660)
                      .++|+............ +..      +..+  .....++|+|+++.++++ .           .+.|.+||+.+++.+.
T Consensus       224 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~  300 (361)
T 2oiz_A          224 YSADFSGDEVKVDGPWS-LLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA  300 (361)
T ss_dssp             EEEECSSSSCEEEEEEE-SCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCceeccccc-ccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE
Confidence            99999764321111111 000      0000  112237899998888874 3           2479999999999999


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC--eeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      ++..+  .  +.+++|+|||++|++++. +.|.+||..++  +.+..+...     |  .   ....++++| +|.
T Consensus       301 ~i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G--~---~P~~~~~~p-~G~  360 (361)
T 2oiz_A          301 RIPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----A--E---ASLQVQFHP-VGG  360 (361)
T ss_dssp             EEECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----C--S---SEEEEEECC-CSC
T ss_pred             EEecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----C--C---CcEEEEecC-CCC
Confidence            98763  3  899999999999998887 99999999999  888776421     2  2   234789999 664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=4.7e-17  Score=170.60  Aligned_cols=280  Identities=11%  Similarity=0.044  Sum_probs=178.7

Q ss_pred             CCeEEEEEecCCCEEEEEECC-C--cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          312 GRVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ..+..++|||||++|+.+... +  .+.+|+..+++                     ......  ++......+.|+  |
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---------------------~~~l~~--~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---------------------AVQLTE--GKGDNTFGGFISTDE   92 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---------------------EEECCC--SSCBCTTTCEECTTS
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---------------------EEEeec--CCCCccccceECCCC
Confidence            347788999999998887653 3  45555554433                     222111  122222236788  8


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEE-------------------EEEcCCC-eEEEE-----eCCCeEEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATY-------------------FILLPQD-LFAFG-----FDDSSILV  440 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~-------------------v~~sp~~-~l~s~-----~~d~~I~i  440 (660)
                      ++|+.++ ++.|.+||+.+++.......+......                   +.|+|++ .++.+     ..+..|++
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            8898888 789999999998876665544432222                   3467777 44433     45668999


Q ss_pred             EeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126          441 HCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI  513 (660)
Q Consensus       441 wd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  513 (660)
                      ||+.+++..... .+...+..+.|+| +++.|+..+.+      ..|.+||+.++..   ..   +......  ..+..+
T Consensus       173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~~~~~~--~~~~~~  243 (396)
T 3c5m_A          173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RK---IKEHAEG--ESCTHE  243 (396)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EE---SSCCCTT--EEEEEE
T ss_pred             EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eE---eeccCCC--ccccce
Confidence            999988765444 4677899999999 88877776654      3688889876431   11   1121110  357789


Q ss_pred             EEecCCcEEEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc-CCCEEEEEe----------------c
Q 006126          514 QFHPDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC----------------K  570 (660)
Q Consensus       514 ~~sp~~~~l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~----------------~  570 (660)
                      +|+|||++|+. +.+     +.|++||+.+++.......   . ... +.|+| ||+++++++                .
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            99999998776 443     4499999988875443322   1 133 89999 999888765                2


Q ss_pred             CCeEEEEECCCCeeEEEeecccccC---CCCcCcccceEEEEEecCCCCEEEEEeC-CCeEEEEeC
Q 006126          571 SGHVKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEP  632 (660)
Q Consensus       571 dg~I~iwd~~~~~~~~~~~~~~~~~---~gh~~~~v~~~~v~~sp~d~~~l~s~s~-Dg~v~iw~~  632 (660)
                      ++.|++||+.+++... +..+....   .+  +.......++|+| ||+.|+.++. ++...||.+
T Consensus       319 ~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          319 DPFLYVLNTKAKSAQK-LCKHSTSWDVLDG--DRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             CCEEEEEETTTTBCCE-EEECCCCCCCBTT--BSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             CCcEEEEecccCceEE-ccCCCCccccccc--cccCCCCCceEcc-CCCeEEEEecCCCCceEEEE
Confidence            4789999999887543 32210000   00  0001123678999 8988887764 565555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=4.5e-15  Score=148.27  Aligned_cols=239  Identities=10%  Similarity=0.065  Sum_probs=174.5

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC------CCCCeEEEEE-cCCC-eEEEEeC-CCeEEEE
Q 006126          374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN------PPPIATYFIL-LPQD-LFAFGFD-DSSILVH  441 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~------~~~~v~~v~~-sp~~-~l~s~~~-d~~I~iw  441 (660)
                      ++-..+.+++++  +.++++.. ++.|.+||.. ++....+..      +...+..+++ .+++ ++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678899998  66666666 7999999987 666666642      3356789999 4677 5555533 8899999


Q ss_pred             eCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee-ccCCCCCCeEEEEEecCC
Q 006126          442 CPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQ  519 (660)
Q Consensus       442 d~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~  519 (660)
                      | .+++.+..+.. +...+.+++++|+|+++++...++.|.+||... +.     +..... ++.   ..+..++++|+|
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-----~~~~~~~~~~---~~p~~i~~~~~g  175 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-----LHKFGCSKHL---EFPNGVVVNDKQ  175 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-----EEEEECTTTC---SSEEEEEECSSS
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE-----EEEeCCCCcc---CCcEEEEECCCC
Confidence            9 56777766643 446789999999999888877889999999754 21     121111 222   468899999999


Q ss_pred             cEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-eEEEEECCCCeeEEEeecccccCCC
Q 006126          520 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPG  597 (660)
Q Consensus       520 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~g  597 (660)
                      +.+++. .++.|++||. +++.+..+....+...+..++++++|+++++...++ .|++||. +++.+..+...      
T Consensus       176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------  247 (286)
T 1q7f_A          176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------  247 (286)
T ss_dssp             EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------
T ss_pred             CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------
Confidence            977774 6889999998 566666665433346789999999999888888776 9999995 46666665432      


Q ss_pred             CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                        .....+.+++++| +|+++++ +.|++|++|++...
T Consensus       248 --~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          248 --VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             --SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred             --CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence              1112244899999 8887777 57999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=2.4e-15  Score=153.74  Aligned_cols=246  Identities=14%  Similarity=0.079  Sum_probs=179.6

Q ss_pred             CCCeEEEEEe--CCEEEEEe-C------------------------CcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC
Q 006126          376 KDSISCFALR--GSHLFSAS-G------------------------GKISIFSLETFQTLATFA-NPPPIATYFILLPQD  427 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s~~-d------------------------g~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~  427 (660)
                      -..+.+++++  |+++++.. +                        +.|.+||..+++....+. .+......++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4568999999  77777766 5                        379999999999887765 444678899999999


Q ss_pred             -eEEEEeCCCeEEEEeCCCCc-eeeEe---------eccCCCeEEEEEeC-CCCEEEEEe-CCCcEEEEEcCCCeeeece
Q 006126          428 -LFAFGFDDSSILVHCPCTKK-TKAKL---------KGHQNRITCLAYSL-SLNVLVSSG-ADAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       428 -~l~s~~~d~~I~iwd~~~~~-~~~~~---------~~~~~~v~~l~~sp-~~~~l~s~s-~dg~i~vwd~~~~~~~~~~  494 (660)
                       ++++...++.|++||..... .+..+         .++-.....++++| ++.++++.+ .++.|++||.. +......
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEe
Confidence             88888889999999986442 45555         23445789999999 788888886 68999999944 3322211


Q ss_pred             eeeeee----eccCCCCCCeEEEEEecC-CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE-
Q 006126          495 FLHSFQ----TGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-  567 (660)
Q Consensus       495 ~~~~~~----~~~~~~~~~v~~~~~sp~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-  567 (660)
                      ......    .++.   .....++++|+ +..+++. .++.|++||..+++.+..+....+...+..++|+| +..+++ 
T Consensus       182 ~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~  257 (329)
T 3fvz_A          182 GEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN  257 (329)
T ss_dssp             CEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred             ccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence            100000    0111   34789999999 6655554 77899999998899988886555677889999999 433333 


Q ss_pred             ------EecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          568 ------SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       568 ------g~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                            ...+..|++|+..+++.+..+...    .++   .-.+..++++| +|.++++...+++|++|++..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~~---~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RKH---FDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCS----SSC---CSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCC----CCc---cCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence                  334458999999999988876421    011   12345899999 888889998999999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=8.2e-14  Score=151.73  Aligned_cols=323  Identities=11%  Similarity=0.047  Sum_probs=218.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeccCcCCCccee-eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc--CCceeee
Q 006126          272 PDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ--SNKQSLE  348 (660)
Q Consensus       272 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~--~~~~~~~  348 (660)
                      |.+.++++...++.|.++|..+    .++. .+.     ....+..++|||||+++++++.|+.|.+||+.  +.+.   
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t----~~v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~---  232 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGST----YEIKTVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---  232 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTT----CCEEEEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---
T ss_pred             CCceEEEEeCCCCeEEEEECCC----CeEEEEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---
Confidence            4456777888889999999984    3333 332     24467899999999999999999999999974  3322   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEECCCCeEEEEEcCC------
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP------  414 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~------  414 (660)
                                        +....   .......++|+      |+++++++  +++|.++|..+.+.+..+...      
T Consensus       233 ------------------v~~i~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~  291 (567)
T 1qks_A          233 ------------------VAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE  291 (567)
T ss_dssp             ------------------EEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred             ------------------eEEEe---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence                              11111   12234566776      66887777  699999999999998876521      


Q ss_pred             -----CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe-eccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEc
Q 006126          415 -----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDA  485 (660)
Q Consensus       415 -----~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~  485 (660)
                           ...+..+..++++  .++....+|.|.++|..+.+.+... ........++.|+|+|++++++. .++.|.++|+
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence                 2267888999988  6666677899999998765433221 12345677889999999987665 5789999999


Q ss_pred             CCCeeeeceee-eeeeeccCCCCCCeEEEEEecCCcEEE-EE--ecCcEEEEeCCC-------CceeeeecCCCCCCCeE
Q 006126          486 VGWKKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLL-SI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPIT  554 (660)
Q Consensus       486 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~--~d~~i~iwd~~~-------~~~~~~~~~~~~~~~v~  554 (660)
                      .+++......+ .  ...|.   +.-..+ ++|++..+. ++  .++.|.++|..+       .+.++++...  ...-.
T Consensus       372 ~t~kl~~~i~vgg--~~Php---g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~  443 (567)
T 1qks_A          372 KEGKLVAIEDTGG--QTPHP---GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSL  443 (567)
T ss_dssp             TTTEEEEEEECSS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCC
T ss_pred             CCCcEEEEEeccC--cCCCC---ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCCE
Confidence            99765443332 1  11221   222222 688855554 45  468999999987       5677777653  22234


Q ss_pred             EEEEccCCCEEEEEec-------CCeEEEEECCCC-----eeE-EEeeccc--ccCCCCcCcccceEEEEEecCCCCEEE
Q 006126          555 YATYSCDGKCIYVSCK-------SGHVKVFDTSTL-----ELR-CQINLTA--YAQPGTISLELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~-------dg~I~iwd~~~~-----~~~-~~~~~~~--~~~~gh~~~~v~~~~v~~sp~d~~~l~  619 (660)
                      .+..+|+++++++...       .+.|.+||+.+.     ... ..+....  ..+.|    ..++..+.|+| +|+.+.
T Consensus       444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~G~~~~  518 (567)
T 1qks_A          444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG----QPRVVQGEFNK-DGTEVW  518 (567)
T ss_dssp             CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS----CCEEEEEEECT-TSSEEE
T ss_pred             EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC----CcceEeeeECC-CCCEEE
Confidence            4778999999998763       358999999876     211 2332100  01111    22355899999 788765


Q ss_pred             EEe-----CCCeEEEEeCCCCceecc
Q 006126          620 LGL-----TNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       620 s~s-----~Dg~v~iw~~~~~~~~w~  640 (660)
                      .+.     .++.|.|+|..+++.+-.
T Consensus       519 ~s~~~~~~~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          519 FSVWNGKDQESALVVVDDKTLELKHV  544 (567)
T ss_dssp             EEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             EEeecCCCCCCcEEEEECCCceEEEE
Confidence            543     379999999999987543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=1.1e-14  Score=145.39  Aligned_cols=242  Identities=10%  Similarity=0.087  Sum_probs=175.6

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---C
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---G  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~  386 (660)
                      |-..+.+++++|+|+.+++.+.++.|.+|+......           ..+... +      ...++...+..+++.   +
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-----------~~~~~~-~------~~~~~~~~p~~i~~~~~~g   89 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-----------FQFGEC-G------KRDSQLLYPNRVAVVRNSG   89 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-----------EEECCB-S------SSTTCBSSEEEEEEETTTT
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-----------EEeccc-C------CCcccccCceEEEEEcCCC
Confidence            567899999999999888888899999998763321           111110 0      001345668899994   4


Q ss_pred             CEEEEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeE
Q 006126          387 SHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRIT  460 (660)
Q Consensus       387 ~~l~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~  460 (660)
                      .++++..  ++.|.+|| .+++.+..+. .+...+.+++++|+| .+++...++.|.+||.. ++.+..+.  .+...+.
T Consensus        90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A           90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence            4455543  68999999 5677777775 344578899999999 77777788999999964 66666664  3456789


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEEecCCcEEEEE-ecC-cEEEEeCCC
Q 006126          461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPT  537 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~-~d~-~i~iwd~~~  537 (660)
                      +++++|+|+++++.+.++.|++||....      .+..+. .++.   ..+..++++|+|+++++. .++ .|.+||. +
T Consensus       168 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~  237 (286)
T 1q7f_A          168 GVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-D  237 (286)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred             EEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence            9999999998888788999999998542      122111 1222   368899999999888875 555 9999996 6


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      ++.+..+........+.+++++|+|+++++ +.|+.|++|++...
T Consensus       238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            777777755333445789999999987777 57999999998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=7e-16  Score=161.63  Aligned_cols=282  Identities=7%  Similarity=-0.019  Sum_probs=174.2

Q ss_pred             EecCCCCEEEEEeCC---CcEEEEeccCcCCCcceeeeecCCCCCCCC-eEEEEEecCCCEEEEEECCCcEEEEeccCCc
Q 006126          269 TSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSHSGDFLVALTQTATHKLWKWQSNK  344 (660)
Q Consensus       269 ~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~-V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~  344 (660)
                      .|||||++|+.....   ..+.+||..+    +....+.  .  +... ...+.|+|||++|+.++.++.+.+|++.+++
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~----~~~~~l~--~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLET----QQAVQLT--E--GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTT----TEEEECC--C--SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCC----CcEEEee--c--CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            899999998877653   3677888874    4444432  1  2233 3347899999999999999999999987765


Q ss_pred             eeeeee-ccceeEEEecCCCCceeeecccCCCCCCeE-----EEEEe--CCEEEEE-----e-CCcEEEEECCCCeEEEE
Q 006126          345 QSLEEE-NVNMESQLYQPSSKLVMTNDIAADPKDSIS-----CFALR--GSHLFSA-----S-GGKISIFSLETFQTLAT  410 (660)
Q Consensus       345 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~v~~s--~~~l~s~-----~-dg~I~iwd~~~~~~~~~  410 (660)
                      ...... ...     |.+. +..+.  +  .......     .+.|+  ++.++.+     . +..|.+||+.+++....
T Consensus       114 ~~~~~~~~~~-----~~~~-g~~l~--~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          114 EQVIYTVDEE-----WKGY-GTWVA--N--SDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             EEEEEECCTT-----EEEE-EEEEE--C--TTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             cEEEEecccc-----cCCC-CCEEE--e--ccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence            422100 000     0000 00000  0  0000000     01223  3333322     2 56899999998876554


Q ss_pred             EcCCCCCeEEEEEcC-CC-eEEEEeCC------CeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCC----
Q 006126          411 FANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGAD----  477 (660)
Q Consensus       411 ~~~~~~~v~~v~~sp-~~-~l~s~~~d------~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~d----  477 (660)
                      . .+...+..+.|+| ++ .|+..+.+      ..|.+||+.+++........ ...+..+.|+|+|++|+.++.+    
T Consensus       184 ~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  262 (396)
T 3c5m_A          184 H-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT  262 (396)
T ss_dssp             E-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred             c-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence            4 4566788999999 77 66665543      46899998766533332311 2357889999999988777554    


Q ss_pred             -CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEEE-----------------ecCcEEEEeCCCC
Q 006126          478 -AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-----------------HEGQIDVYEAPTL  538 (660)
Q Consensus       478 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~-----------------~d~~i~iwd~~~~  538 (660)
                       +.|++||+.+++...   +.   ..     .... +.|+| ||++++++                 .+..|++||+.++
T Consensus       263 ~~~l~~~d~~~g~~~~---l~---~~-----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          263 DRVIYKANPETLENEE---VM---VM-----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             CEEEEEECTTTCCEEE---EE---EC-----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             cceEEEEECCCCCeEE---ee---eC-----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence             449999998864321   11   11     1233 89999 99988863                 2368999999877


Q ss_pred             ceeeeecCCCCCC-----------CeEEEEEccCCCEEEEEec-CCe--EEEEECCCCee
Q 006126          539 NHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLEL  584 (660)
Q Consensus       539 ~~~~~~~~~~~~~-----------~v~~~~~s~dg~~l~sg~~-dg~--I~iwd~~~~~~  584 (660)
                      +.. .+...  ..           .+..++|+|||+.|+.++. ++.  |+++++.+++.
T Consensus       331 ~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          331 SAQ-KLCKH--STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             BCC-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             ceE-EccCC--CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence            653 33321  22           2566899999999887765 444  55556665543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=1e-14  Score=148.90  Aligned_cols=240  Identities=9%  Similarity=0.024  Sum_probs=173.2

Q ss_pred             CCeEEEEEeCC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee
Q 006126          377 DSISCFALRGS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK  453 (660)
Q Consensus       377 ~~v~~v~~s~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~  453 (660)
                      .....+.+.++ ..++.. ++.|.+||..+++.+.++. .......+++++++ .+++...++.|.+||+.+++....+.
T Consensus        44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            44677888844 444444 7999999999999988885 34567899999999 55555589999999999998877765


Q ss_pred             ccC-----CCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-
Q 006126          454 GHQ-----NRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-  525 (660)
Q Consensus       454 ~~~-----~~v~~l~~sp~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-  525 (660)
                      ...     .....+++ . +..++++.  .++.|.+||..+++....     +..+     .....++++|+|++++++ 
T Consensus       123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~-----i~~g-----~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDE-----LTIG-----IQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEE-----EECS-----SCBCCCEECTTSEEEEEBC
T ss_pred             cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEE-----EEcC-----CCccceEEcCCCCEEEEEC
Confidence            432     14556777 3 44555444  488999999999764332     2222     245678999999977774 


Q ss_pred             ec----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126          526 HE----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ  595 (660)
Q Consensus       526 ~d----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~  595 (660)
                      .+          +.|.++|..+++....+.... ......++|+|+++.++++..  .|++||..+++.....    +..
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~  263 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE  263 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence            33          789999999998877765421 346889999999999988754  8999999988753211    111


Q ss_pred             CCCcCcccceEEEEEecCCCCEEEEE----eCCCeEEEEeCCCCceeccC
Q 006126          596 PGTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       596 ~gh~~~~v~~~~v~~sp~d~~~l~s~----s~Dg~v~iw~~~~~~~~w~~  641 (660)
                      .+  .  -.+..++++|+++.++++.    ..+++|.+|++. ++..|..
T Consensus       264 ~~--~--~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          264 FR--D--TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             CC--S--SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             CC--C--CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            01  1  2244899999667777777    678999999998 8776653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=3.2e-15  Score=168.23  Aligned_cols=280  Identities=10%  Similarity=-0.045  Sum_probs=178.8

Q ss_pred             EecCCCCEEEEE--eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeE---------EEEEe--cCCCE-EEEEEC-CC
Q 006126          269 TSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGDF-LVALTQ-TA  333 (660)
Q Consensus       269 ~~spdg~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~---------~~~~s--pdg~~-l~s~s~-dg  333 (660)
                      .+++++.+++..  +.++...||....   .+....+  ..  |...+.         ...|+  |||++ |+.++. +.
T Consensus        30 ~~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~l--~~--~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~  102 (662)
T 3azo_A           30 GAVGDEVWWVAPRPAEAGRATLVRRRA---DGAEESA--LP--APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ  102 (662)
T ss_dssp             EEETTEEEEEEEETTTTTEEEEEEECT---TSCEEES--SC--TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred             EEcCCeEEEEecCcccCCcEEEEEECC---CCCccee--CC--CCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence            778777677776  5578899999643   2334443  22  445555         56566  99998 776654 44


Q ss_pred             cEEEEecc--CCceeeeeeccceeEEEecCCCCceeeeccc--CCCCCCeEEEEEe--CCEEEEEe-C----------Cc
Q 006126          334 THKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-G----------GK  396 (660)
Q Consensus       334 ~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s--~~~l~s~~-d----------g~  396 (660)
                      .|.+|+..  +                    ++........  ..|...+..++|+  |+.|++++ +          ..
T Consensus       103 ~l~~~~~~~~g--------------------~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A          103 RLYAFEPDAPG--------------------GAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             CEEEECTTSTT--------------------CCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred             eEEEEcCCCCC--------------------CCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence            55544443  1                    0111111100  0156678899999  88888887 5          58


Q ss_pred             EEEEECCC------CeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCC--------CeEEEEeCC-CC---ceeeEeeccC
Q 006126          397 ISIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-TK---KTKAKLKGHQ  456 (660)
Q Consensus       397 I~iwd~~~------~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d--------~~I~iwd~~-~~---~~~~~~~~~~  456 (660)
                      |.+||+.+      ++. ..+. .+...+..++|+||| .|+.++.+        ..|++||+. ++   +......+|.
T Consensus       163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~  241 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE  241 (662)
T ss_dssp             EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             EEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence            99999988      554 4455 556677889999999 88877754        379999998 56   4444445567


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCC-----CCCeEEEEEecCCcEEEEE-ecC
Q 006126          457 NRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPE-----TTIVNHIQFHPDQIHLLSI-HEG  528 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~-~d~  528 (660)
                      ..+..+.|+|||+++++++.++  .|.+||+.+++...      +..++...     ...+.+++|+|++++++++ . +
T Consensus       242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~------l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ------LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE------SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee------cccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            8899999999999888888888  56666765643211      11222100     0015678999999988885 5 8


Q ss_pred             cEEEE--eCCCCceeeeecCCCCCCCeEEEEEccCCCE--EEEEecCC--eEEEEECCCCeeEEE
Q 006126          529 QIDVY--EAPTLNHTSQLVPDKMDLPITYATYSCDGKC--IYVSCKSG--HVKVFDTSTLELRCQ  587 (660)
Q Consensus       529 ~i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--l~sg~~dg--~I~iwd~~~~~~~~~  587 (660)
                      .++||  |+.+++ +..+..  +...+..+ ++++++.  +++++.+.  .|++||+.+++....
T Consensus       315 ~~~l~~~d~~~~~-~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          315 AAVLGILDPESGE-LVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             SCEEEEEETTTTE-EEECCS--SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             ccEEEEEECCCCc-EEEecC--CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            88888  665554 555543  35566655 1444543  33444443  567778878875543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=7.7e-15  Score=149.94  Aligned_cols=261  Identities=11%  Similarity=-0.013  Sum_probs=182.3

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee---eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      -+.|.+++++|+|+.+++.+.++.+.+|+.........   .......+.+||..++.++.... .++-.....++++  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence            56799999999999988888886554444332221100   01112346778877777654332 1345678899999  


Q ss_pred             CCEEEEEe-CCcEEEEECCCCe-EEEEE---------cCCCCCeEEEEEcC-CC-eEEEEe-CCCeEEEEeCCCCceeeE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQ-TLATF---------ANPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK  451 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~-~~~~~---------~~~~~~v~~v~~sp-~~-~l~s~~-~d~~I~iwd~~~~~~~~~  451 (660)
                      |+++++.. ++.|++||..... .+..+         ..+......++++| ++ ++++.+ .++.|++|| .+++.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            77666666 7899999986542 45555         23344678999999 67 667765 689999999 56777776


Q ss_pred             eecc----------CCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          452 LKGH----------QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       452 ~~~~----------~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      +...          -.....++++|+ +.++++...++.|++||..+++.......    ..+.   ..+..++|+| +.
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~----~~~~---~~~~~~~~~p-g~  252 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH----ASFG---RNVFAISYIP-GF  252 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC----TTTT---TCEEEEEEET-TE
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec----cccC---CCcceeeecC-CE
Confidence            6432          234889999998 77777777889999999987654322111    1222   4688999999 43


Q ss_pred             EEEE-E-------ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          521 HLLS-I-------HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       521 ~l~~-~-------~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      .+++ +       .+..|++||..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++..
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            3333 2       234899999999998888742 13466789999999998888888899999999753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=3.2e-15  Score=168.25  Aligned_cols=285  Identities=12%  Similarity=0.006  Sum_probs=183.3

Q ss_pred             CCCCeEEEEEecCCCEEEEE--ECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-------
Q 006126          310 FGGRVVRLIYSHSGDFLVAL--TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-------  380 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~--s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-------  380 (660)
                      |...+..++|++++-++++.  +.++...||....+..                    .....   .|...+.       
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~l~---~~~~~~~~~~~~~~   78 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--------------------EESAL---PAPWNVRNRVFEYS   78 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--------------------EEESS---CTTCCBCCCGGGTC
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--------------------cceeC---CCCccccccccccC
Confidence            78899999999887777776  4578888997532221                    11111   2222222       


Q ss_pred             --EEEEe----CCE-EEEEe--CCcEEEEECC--CCeEEEEEcC-----CCCCeEEEEEcCCC-eEEEEeCC--------
Q 006126          381 --CFALR----GSH-LFSAS--GGKISIFSLE--TFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------  435 (660)
Q Consensus       381 --~v~~s----~~~-l~s~~--dg~I~iwd~~--~~~~~~~~~~-----~~~~v~~v~~sp~~-~l~s~~~d--------  435 (660)
                        ...|+    |+. |+.++  +..|.+|++.  .......+..     +...+.+++|+||| .|++++.+        
T Consensus        79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence              33333    777 77776  3567777765  2033445554     56678899999999 88888776        


Q ss_pred             --CeEEEEeCCC------CceeeEee-ccCCCeEEEEEeCCCCEEEEEeCCC--------cEEEEEcC-CCeeeeceeee
Q 006126          436 --SSILVHCPCT------KKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADA--------QLCVWDAV-GWKKLCSKFLH  497 (660)
Q Consensus       436 --~~I~iwd~~~------~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg--------~i~vwd~~-~~~~~~~~~~~  497 (660)
                        ..|++||+.+      ++. ..+. .+...+..++|+|||++|+.++.++        .|++||+. ++...   ...
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~  234 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTR  234 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEE
T ss_pred             ceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccE
Confidence              5899999987      554 4455 5567788899999999999887553        79999998 55211   112


Q ss_pred             eeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeCCCCceeeeecCCCCC------CCeEEEEEccCCCEEEEE
Q 006126          498 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMD------LPITYATYSCDGKCIYVS  568 (660)
Q Consensus       498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~dg~~l~sg  568 (660)
                      .+..++.   ..+..++|+|||++++++ .++  .|++||+.+++...........      ..+..++|+|++++++++
T Consensus       235 ~l~~~~~---~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          235 TLLGGPE---EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             EEEEETT---BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             EeCCCCC---ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence            1334444   578999999999966665 556  6888887677654433221100      015678999999999999


Q ss_pred             ecCCeEEEE--ECCCCeeEEEeecccccCCCCcCcccceEEE-EEecCCCCEEEEEeCCC--eEEEEeCCCCce
Q 006126          569 CKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIALGLTNG--RVHVIEPLESEV  637 (660)
Q Consensus       569 ~~dg~I~iw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v-~~sp~d~~~l~s~s~Dg--~v~iw~~~~~~~  637 (660)
                      +. +.++||  |+.+++ ...+.       ++ ...+.  .+ ++++ +.-++++++.+.  .|.+|++.+++.
T Consensus       312 ~~-~~~~l~~~d~~~~~-~~~l~-------~~-~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          312 GK-GAAVLGILDPESGE-LVDAA-------GP-WTEWA--ATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             BS-SSCEEEEEETTTTE-EEECC-------SS-CCEEE--EEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             Ec-CccEEEEEECCCCc-EEEec-------CC-CCeEE--EEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence            98 999998  666665 44443       22 22233  44 4433 222344555554  455567767654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.69  E-value=9.8e-15  Score=144.81  Aligned_cols=253  Identities=9%  Similarity=-0.001  Sum_probs=191.6

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEE
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITC  461 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~  461 (660)
                      ++.|++++ ++.|.+||.++|+.+.++..+. ..+.++.++|+| .++  +.++.|..||. +|+.+..+..+ ...+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            56778888 8999999999999999998765 578899999999 666  45788999998 89999888864 357889


Q ss_pred             EEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc
Q 006126          462 LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN  539 (660)
Q Consensus       462 l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~  539 (660)
                      +.+.|+|+.+++.+. ++.+..+|. +++.+....+.....++.   .....+++.++|.++++. .++.|..||.. |+
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            999999999999887 778888886 555443333321111111   235567789999999985 78999999997 99


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~  619 (660)
                      .+.++..   ...+.++.+.++|+.+++++.++.|..+|..+|+.+..+.....  .+  ..-.++..+...+ +|++++
T Consensus       157 ~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~--~~l~~~~~~~~~~-~G~i~v  228 (276)
T 3no2_A          157 LLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI--EG--VQLFFVAQLFPLQ-NGGLYI  228 (276)
T ss_dssp             EEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS--BS--CCCSEEEEEEECT-TSCEEE
T ss_pred             EEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC--CC--ccccccccceEcC-CCCEEE
Confidence            9888865   24566788889999999998889999999999999998863211  01  1123355788888 899888


Q ss_pred             EEeCC--------CeEEEEeC-CCCceeccCCCCcccccccccc
Q 006126          620 LGLTN--------GRVHVIEP-LESEVEWGKLPFTDSREFSTTF  654 (660)
Q Consensus       620 s~s~D--------g~v~iw~~-~~~~~~w~~~~~~~~~~~~~~~  654 (660)
                      +....        +..+++++ .+++..|......+-+..|+++
T Consensus       229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             EeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence            87421        24467777 5788899988888777777663

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=2.9e-14  Score=146.58  Aligned_cols=274  Identities=9%  Similarity=0.049  Sum_probs=155.9

Q ss_pred             CCCEEEEEe---------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEEec
Q 006126          273 DADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKW  340 (660)
Q Consensus       273 dg~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d---g~i~vw~~  340 (660)
                      ||++++...         .++.|.+||+.+    +....+        ..+..++|||||++|+.++.+   +...||  
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~--   88 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKN----NARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIW--   88 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEE--
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCC----CceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEE--
Confidence            898887653         256788999874    333332        357889999999999987753   332222  


Q ss_pred             cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126          341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI  417 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~  417 (660)
                                       +|+..++.......   +.. +..++|+  |+.|+.++ +.       .....       ...
T Consensus        89 -----------------~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~-------~~~~~-------~~~  133 (347)
T 2gop_A           89 -----------------VADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKR-------REDED-------FIF  133 (347)
T ss_dssp             -----------------EEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECC-------CC-------------
T ss_pred             -----------------EEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccC-------CCcCC-------cEE
Confidence                             22222222221110   111 4555555  44444443 21       00000       000


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-------cEEEEEcCCCe
Q 006126          418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWK  489 (660)
Q Consensus       418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-------~i~vwd~~~~~  489 (660)
                      +..+.|..+| -+. ......|++||+.+++.+..+.. . .+..+.|+||| ++++++.++       ...+|.+.+++
T Consensus       134 ~~~~~~~~~g~~~~-~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~  209 (347)
T 2gop_A          134 EDDVPAWFDDLGFF-DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK  209 (347)
T ss_dssp             ---CCCC----------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred             EcccceeecCcccc-cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence            1111122222 111 11235799999998877455554 3 78899999999 777776542       34444444433


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec--------CcEEEEeCCCCceeeeecCCCCCCCeEE-EEEc
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYS  559 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s  559 (660)
                      .   ..   +..+ .    .+..+  +|||++|+. +.+        ..|++||  +++.. .+.. .+...+.. +.|+
T Consensus       210 ~---~~---l~~~-~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~~~~~~~~~~~~s  272 (347)
T 2gop_A          210 E---EK---MFEK-V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-EVDRGVGQAKIKD  272 (347)
T ss_dssp             E---EE---EEEE-E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-TCCSEEEEEEEET
T ss_pred             e---EE---eccC-c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-cCCcccCCccEEc
Confidence            2   11   1111 1    34444  999999887 433        3688888  55543 3322 34667876 8999


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeE-EEEeCC
Q 006126          560 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV-HVIEPL  633 (660)
Q Consensus       560 ~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v-~iw~~~  633 (660)
                       || ++++++.++.++|| +.+++....+.       +  ...+  .+++|+|   .++++++.++.. .||.+.
T Consensus       273 -dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v--~~~~~s~---~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          273 -GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWI--MGFDVDE---IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             -TE-EEEEEEETTEEEEE-EESSSEEEEEC-------S--SSEE--EEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred             -Cc-EEEEEecCCcEEEE-EcCCceEEEec-------C--CCeE--EeeeeeC---cEEEEEcCCCChHHheEeC
Confidence             88 88999999999999 87666543332       1  2233  4889988   577777777664 777765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=3e-14  Score=145.61  Aligned_cols=271  Identities=11%  Similarity=0.055  Sum_probs=181.8

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      ...|.+++|++++..++..+.++.++.|.-   ..             |.     .+   .  .+...+.+++|+  +++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~-----~~---~--~~~~~~~~~~~~~~g~l   58 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTITA---EP-------------WL-----EI---S--KKGLQLEGLNFDRQGQL   58 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EE-------------EE-----EE---E--SSCCCEEEEEECTTSCE
T ss_pred             ccccceeeecCCccceeEEeecccCccccc---ce-------------eE-----EE---e--ccCccccCcEECCCCCE
Confidence            445788889998887777777888887721   10             10     00   0  355567899998  666


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeEee--ccCCCeE
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GHQNRIT  460 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~~~--~~~~~v~  460 (660)
                      ++++. ++.|.+||..+++.......+...+.+++++|+| ++++...+    +.|.+||..++.....+.  .+...+.
T Consensus        59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  138 (333)
T 2dg1_A           59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID  138 (333)
T ss_dssp             EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred             EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence            66666 7899999999887766554566789999999999 76766666    689999998876553333  2446789


Q ss_pred             EEEEeCCCCEEEEEeC------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEE
Q 006126          461 CLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDV  532 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~i  532 (660)
                      ++.++|+|+++++...      .+.|..||..+++..   .   +... .   ..+..++|+|+|+.++++  .++.|++
T Consensus       139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---~---~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT---P---IIQN-I---SVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE---E---EEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE---E---eecC-C---CcccceEECCCCCEEEEEeCCCCeEEE
Confidence            9999999988876654      255666666553321   1   1111 1   357889999999877663  5689999


Q ss_pred             EeCCC-Cceeeee------cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126          533 YEAPT-LNHTSQL------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP  605 (660)
Q Consensus       533 wd~~~-~~~~~~~------~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~  605 (660)
                      ||+.+ +..+..+      .... ...+..++++++|+++++...++.|.+||. +++.+..+..... ..|| .  ..+
T Consensus       209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~-~--~~~  282 (333)
T 2dg1_A          209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH-M--LRS  282 (333)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC-S--CBC
T ss_pred             EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc-c--cCc
Confidence            99964 3332211      1111 246788999999998888878899999998 4666665542200 0011 0  123


Q ss_pred             EEEEEecCCCCEEEEEeCC
Q 006126          606 LVIAAHPLEPNRIALGLTN  624 (660)
Q Consensus       606 ~~v~~sp~d~~~l~s~s~D  624 (660)
                      .+++|+| |+..|..++.+
T Consensus       283 ~~~~~~~-dg~~L~v~~~~  300 (333)
T 2dg1_A          283 THPQFIP-GTNQLIICSND  300 (333)
T ss_dssp             CEEEECT-TSCEEEEEEEC
T ss_pred             ceEEECC-CCCEEEEEeCc
Confidence            4899999 77666655554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=5.2e-12  Score=126.36  Aligned_cols=276  Identities=9%  Similarity=0.039  Sum_probs=188.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      +...+.+++++++|+.+++...++.|.+|+.. +..           ..+.          .. .+...+.++++.  +.
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-----------~~~~----------~~-~~~~~~~~i~~~~~g~   69 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-----------TEYP----------LP-TPDAKVMCLTISSDGE   69 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-----------EEEE----------CS-STTCCEEEEEECTTSC
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-----------EEec----------CC-cccCceeeEEECCCCC
Confidence            56789999999999977766667889888765 322           1111          00 234568889998  66


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEE
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCL  462 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l  462 (660)
                      .+++.. ++.|..||.. ++. ..+.  .....+.++++.++| .+++...++.|.+||. +++.... ...+...+.++
T Consensus        70 l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           70 VWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI  146 (299)
T ss_dssp             EEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             EEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence            666655 6889999986 443 2232  345678899999999 6666667889999998 5554432 22345678999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCcee
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT  541 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~  541 (660)
                      +++++|+..++...++.|..||. +++...   ..  .....   ..+..++++++|...++. .++.|.+||. +++..
T Consensus       147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          147 TLGSDNALWFTENQNNAIGRITE-SGDITE---FK--IPTPA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT  216 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECT-TCCEEE---EE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             EEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee--CCCCC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence            99999988887777889999998 543221   11  11122   468899999999876665 5788999999 66643


Q ss_pred             eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          542 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      . +....+...+.+++++++|+++++...++.|.+||. +++.. .+...     ++ ...  +.++++ + ++.++++.
T Consensus       217 ~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~-----~~-~~~--~~~i~~-~-~g~l~v~~  283 (299)
T 2z2n_A          217 E-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQ-----IK-SAE--PHGICF-D-GETIWFAM  283 (299)
T ss_dssp             E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECS-----SS-SCC--EEEEEE-C-SSCEEEEE
T ss_pred             E-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCC-----CC-CCc--cceEEe-c-CCCEEEEe
Confidence            3 322223577899999999997777667889999998 45432 33211     11 222  447888 7 78877776


Q ss_pred             eCCCeEEEEeCCCC
Q 006126          622 LTNGRVHVIEPLES  635 (660)
Q Consensus       622 s~Dg~v~iw~~~~~  635 (660)
                      + .+.|..+++.++
T Consensus       284 ~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          284 E-CDKIGKLTLIKD  296 (299)
T ss_dssp             T-TTEEEEEEEC--
T ss_pred             c-CCcEEEEEcCcc
Confidence            5 567777777654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=1.1e-13  Score=143.08  Aligned_cols=225  Identities=8%  Similarity=-0.055  Sum_probs=149.5

Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCeEEEEeCCCCceeeEeecc------C
Q 006126          394 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH------Q  456 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----------~d~~I~iwd~~~~~~~~~~~~~------~  456 (660)
                      |+.|.+||..+++.+..+..+..+  .++|+||| .++++.          .++.|.+||+.+++.+..+...      .
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL  107 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence            568999999999998888765544  89999999 777765          3668999999999888777532      2


Q ss_pred             CCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeec-eeeeee----eeccCCCCCCeEEEEEecCCc---------
Q 006126          457 NRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCS-KFLHSF----QTGLVPETTIVNHIQFHPDQI---------  520 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~----~~~~~~~~~~v~~~~~sp~~~---------  520 (660)
                      .....++++|||++|+++..  +++|.+||+.+++.... ......    ....    +.-.-++++++|+         
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPN----RPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTT----SSSEEEEEETTSSEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCC----CCeeEEEECCCCcEEEEEECCC
Confidence            45678999999999998864  68999999999765433 211100    0000    0001122222222         


Q ss_pred             -----------------------------EEEE-EecCcEEEEeCCCCce--eeeecCCC----C----CCCeEEEEEcc
Q 006126          521 -----------------------------HLLS-IHEGQIDVYEAPTLNH--TSQLVPDK----M----DLPITYATYSC  560 (660)
Q Consensus       521 -----------------------------~l~~-~~d~~i~iwd~~~~~~--~~~~~~~~----~----~~~v~~~~~s~  560 (660)
                                                   .++. +.++.|.++|+.....  ...+....    +    ......++|+|
T Consensus       184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~  263 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR  263 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred             CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence                                         2222 2334566666543321  11111000    0    01111268999


Q ss_pred             CCCEEEEEec-----------CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126          561 DGKCIYVSCK-----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV  629 (660)
Q Consensus       561 dg~~l~sg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i  629 (660)
                      +++.++++..           .+.|.+||+.+++.+..+...        .  .+  +++|+| ||++|++++. ++|.+
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~--------~--p~--~ia~sp-dg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR--------D--AL--SMTIDQ-QRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--------T--CC--EEEEET-TTTEEEEECS-SCEEE
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--------C--ee--EEEECC-CCCEEEEeCC-CeEEE
Confidence            9998887654           348999999999999888742        2  44  899999 8999998887 99999


Q ss_pred             EeCCCC--cee
Q 006126          630 IEPLES--EVE  638 (660)
Q Consensus       630 w~~~~~--~~~  638 (660)
                      ||..++  +..
T Consensus       330 ~D~~t~~l~~~  340 (361)
T 2oiz_A          330 YDISQPEPKLL  340 (361)
T ss_dssp             EECSSSSCEEE
T ss_pred             EECCCCcceee
Confidence            999998  653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=1.7e-13  Score=155.37  Aligned_cols=242  Identities=9%  Similarity=-0.032  Sum_probs=167.3

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe--CC----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCe-------
Q 006126          374 DPKDSISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSS-------  437 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~--dg----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~-------  437 (660)
                      +|...+..++|+  |++|+.+.  +|    .|++||+.+++.......+ ..+..++|+||| .|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            455568899999  88888776  33    8999999999877643222 225679999999 8888887765       


Q ss_pred             ---------EEEEeCCCCcee--eEeec--cCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEcCC------Ceeeec
Q 006126          438 ---------ILVHCPCTKKTK--AKLKG--HQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVG------WKKLCS  493 (660)
Q Consensus       438 ---------I~iwd~~~~~~~--~~~~~--~~~~v~~l~~sp~~~~l~s~s~-----dg~i~vwd~~~------~~~~~~  493 (660)
                               |++|++.+++..  ..+..  |...+..+.|+|||++|+.++.     +..|++||+.+      +..   
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---  277 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL---  277 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---
Confidence                     999999887632  22332  4566889999999999988765     56899999976      321   


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec----CcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEE
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE----GQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIY  566 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d----~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~  566 (660)
                       .+. ....+.   ..+.. .|+|+|..|+. +..    ..|.+||+.++..  ...+..+.....+..++|++++.+++
T Consensus       278 -~~~-~l~~~~---~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          278 -KWV-KLIDNF---EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             -CCE-EEECSS---SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             -ceE-EeeCCC---CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence             122 122232   23433 58899998887 432    3699999987642  34444322124688899998888888


Q ss_pred             EEecCCe--EEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EEe---CCCeEEEEeCCCCc
Q 006126          567 VSCKSGH--VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESE  636 (660)
Q Consensus       567 sg~~dg~--I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s---~Dg~v~iw~~~~~~  636 (660)
                      +...|+.  |++|++.+|+....+..+        ..  .+..++++| ++..++ +.+   ..++|++||+.+++
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--------~~--~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLE--------VG--SVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCC--------SS--EEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCC--------Cc--eEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888884  667788778766666531        22  244789999 676555 333   34799999998877

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=9.3e-13  Score=149.26  Aligned_cols=278  Identities=12%  Similarity=0.049  Sum_probs=181.8

Q ss_pred             cCCCCEEEEEeCCC-c--EEEEeccCcCCCcceeee----ecCCCCCCCCeEEEEEecCCCEEEEEECCC-----cEEEE
Q 006126          271 LPDADSAVCAKSLE-K--SVNLKLQLINEPSECRTL----LLPDNSFGGRVVRLIYSHSGDFLVALTQTA-----THKLW  338 (660)
Q Consensus       271 spdg~~l~s~~~dg-~--i~iwd~~~~~~~~~~~~~----~l~~~~h~~~V~~~~~spdg~~l~s~s~dg-----~i~vw  338 (660)
                      +|||++++....++ .  -.+|-....  .+....+    .+. .+|...+..++|||||++||.++.++     .|++|
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lld~~~l~-~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~  156 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVFLDPNILS-DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM  156 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESST--TSCCEEEECGGGGC-TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEE
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEEECHHHhc-cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48888887665442 1  245544321  1111111    111 23455788999999999999876643     67777


Q ss_pred             eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCc----------------EEE
Q 006126          339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISI  399 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~----------------I~i  399 (660)
                      |+.+++.                     .....   ....+..++|+  |+.|+.++ ++.                |++
T Consensus       157 d~~tg~~---------------------~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~  212 (710)
T 2xdw_A          157 KVDGAKE---------------------LPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY  212 (710)
T ss_dssp             ETTTTEE---------------------EEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred             ECCCCCC---------------------Ccccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence            7766543                     21111   11125678899  77888877 654                999


Q ss_pred             EECCCCeE--EEEEc--CCCCCeEEEEEcCCC-eEEEEeC-----CCeEEEEeCCC------Cc-eeeEeeccCCCeEEE
Q 006126          400 FSLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCL  462 (660)
Q Consensus       400 wd~~~~~~--~~~~~--~~~~~v~~v~~sp~~-~l~s~~~-----d~~I~iwd~~~------~~-~~~~~~~~~~~v~~l  462 (660)
                      |++.+++.  ...+.  .+...+..+.|+||| .|+.++.     +..|++||+.+      +. ....+..+...+.. 
T Consensus       213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-  291 (710)
T 2xdw_A          213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-  291 (710)
T ss_dssp             EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred             EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence            99988762  22233  345567899999999 7666654     56899999986      43 45666666666655 


Q ss_pred             EEeCCCCEEEEEeCCC----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeC
Q 006126          463 AYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA  535 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~iwd~  535 (660)
                      .|+|+|+.|+..+.++    .|.+||+.++...   ....+...+..  ..+..++|++++.++++. .++  .|++||+
T Consensus       292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLVPEHEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEECCCSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceeccCCCCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            4889999887776543    5999999875311   11212222221  257789999777777764 565  5778888


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec----CCeEEEEECCCCe
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLE  583 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~----dg~I~iwd~~~~~  583 (660)
                      .+++.+..+..  +...+..++++|+++.++....    .+.|++||+.+++
T Consensus       367 ~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          367 ATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            77887777754  3677888999999987664432    4789999999887

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=1.8e-12  Score=141.14  Aligned_cols=299  Identities=14%  Similarity=0.095  Sum_probs=192.0

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe----cCCCEEEEEEC-CCcEEEEecc
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS----HSGDFLVALTQ-TATHKLWKWQ  341 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s----pdg~~l~s~s~-dg~i~vw~~~  341 (660)
                      .+.|||||+++++++.|+.|.+||+.... ......+.     .......++|+    |||++++++.. ++++.|+|..
T Consensus       201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~-----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          201 ISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIK-----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             ceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEe-----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            45899999999999999999999994100 22333332     14457899999    69999988877 5899999876


Q ss_pred             CCceeeeeeccceeEEEecCCCCceeeecccCCC-CCCeEEEEEe--CCEE-EEEe-CCcEEEEECCCCeEEEEEc-CCC
Q 006126          342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFA-NPP  415 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s--~~~l-~s~~-dg~I~iwd~~~~~~~~~~~-~~~  415 (660)
                      +.+....          .... +....  ..+.| ...+..+..+  +..+ +... +|.|.++|..+.+...... ...
T Consensus       275 t~~~~~~----------i~~~-~~~~~--~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~  341 (567)
T 1qks_A          275 TLEPKKI----------QSTR-GMTYD--EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE  341 (567)
T ss_dssp             TCCEEEE----------EECC-EECTT--TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred             CCcEEEE----------Eecc-ccccc--cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc
Confidence            6554211          0000 00000  00002 2256777777  4444 4444 6999999998754332211 234


Q ss_pred             CCeEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCceeeEeec-----cCCCeEEEEEeCCCCEEE-EEe-CCCcEEEEEcC
Q 006126          416 PIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLSLNVLV-SSG-ADAQLCVWDAV  486 (660)
Q Consensus       416 ~~v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~-s~s-~dg~i~vwd~~  486 (660)
                      ....++.|+|+| ++++ ...++.|.++|+.+++.+..+..     |.+.--.+ ++|++..+. ++. .+++|.++|..
T Consensus       342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence            456788999999 6554 44678999999999987766643     33222222 688755544 443 46899999998


Q ss_pred             CCee--eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--------cCcEEEEeCCCC-----ce-eeeecC----
Q 006126          487 GWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTL-----NH-TSQLVP----  546 (660)
Q Consensus       487 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------d~~i~iwd~~~~-----~~-~~~~~~----  546 (660)
                      ++..  ...+.++++... .   ..-..+..+|+++++.+..        .++|.++|+.+.     .. ...+..    
T Consensus       421 ~~~~~~~~~kvv~~i~~~-g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~  496 (567)
T 1qks_A          421 PEGHPDNAWKILDSFPAL-G---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA  496 (567)
T ss_dssp             TTTCTTTBTSEEEEEECS-C---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred             CCCCccccCEEEEEEecC-C---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence            7211  001222322211 1   1223477899999999853        469999999876     21 122211    


Q ss_pred             --CCCCCCeEEEEEccCCCEEEEEec-----CCeEEEEECCCCeeEEEee
Q 006126          547 --DKMDLPITYATYSCDGKCIYVSCK-----SGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       547 --~~~~~~v~~~~~s~dg~~l~sg~~-----dg~I~iwd~~~~~~~~~~~  589 (660)
                        ......+..+.|+|+|+++..+.+     ++.|.|+|..+++++..+.
T Consensus       497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence              112457889999999998887744     6999999999999988876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=3.7e-14  Score=160.31  Aligned_cols=240  Identities=9%  Similarity=-0.019  Sum_probs=159.6

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe--C----CcEEEEECCCCeEE-EEEcCCCCCeEEEEEcCCC-eEEEEeCCCe------
Q 006126          374 DPKDSISCFALR--GSHLFSAS--G----GKISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSS------  437 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~--d----g~I~iwd~~~~~~~-~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~------  437 (660)
                      +|...+..++|+  |++|+.+.  +    ..|++||+.+++.+ ... ........++|+||| .|+.++.|..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            466678899999  88888543  2    57999999998865 211 111112578999999 8888888766      


Q ss_pred             -------EEEEeCCCCce----eeEeeccCCCeEEEEEeCCCCEEEEEeCCC----cEEEEEcCCCeeeeceeeeeeeec
Q 006126          438 -------ILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       438 -------I~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                             |++|++.+++.    +.....+...+.++.|+|||++|+.++.++    .|++||..++.      ...+. .
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~-~  269 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLV-K  269 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEE-E
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEee-c
Confidence                   99999988762    223334556889999999999998887666    67777665432      12122 2


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~  575 (660)
                      +.   ..+....+ ++|. ++. +.    ++.|.+||+.++..  ...+........+..++|+ ++.++++...|+..+
T Consensus       270 ~~---~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  343 (695)
T 2bkl_A          270 GV---GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE  343 (695)
T ss_dssp             CS---SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred             CC---CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            22   24555556 6677 555 43    47899999987653  2334332224567888888 778888999999888


Q ss_pred             EEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EE---eCCCeEEEEeCCCCce
Q 006126          576 VFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LG---LTNGRVHVIEPLESEV  637 (660)
Q Consensus       576 iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~---s~Dg~v~iw~~~~~~~  637 (660)
                      ||.+. +++....+..+       ....  +..++++| ++..++ +.   ..+++|++||+.+++.
T Consensus       344 l~~~~~~g~~~~~l~~~-------~~~~--v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          344 VRVATLKGKPVRTVQLP-------GVGA--ASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEETTCCEEEECCCS-------SSSE--ECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEeCCCCeeEEecCC-------CCeE--EEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            87654 35444444321       1222  33788899 777665 22   2357899999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=6.4e-14  Score=158.35  Aligned_cols=281  Identities=10%  Similarity=-0.073  Sum_probs=176.3

Q ss_pred             EecCCCCEEEEEeCCC---cEEEEeccCcCCCcceeeee-c--CCCCCCCCeEEEEEecCCCEEEEEE-----CCCcEEE
Q 006126          269 TSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLL-L--PDNSFGGRVVRLIYSHSGDFLVALT-----QTATHKL  337 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~-l--~~~~h~~~V~~~~~spdg~~l~s~s-----~dg~i~v  337 (660)
                      ..+|||++++....++   .-.+|.....  .+....+. .  ...+|...+..++|||||++||.+.     .+..|++
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v  151 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGE--SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV  151 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEEST--TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCC--CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence            4458999888777654   3556655421  12222221 1  1123666799999999999998543     3457888


Q ss_pred             EeccCCceeeeeeccceeEEEecCCCCcee-eecccCCCCCCeEEEEEe--CCEEEEEe-CCc-------------EEEE
Q 006126          338 WKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS-GGK-------------ISIF  400 (660)
Q Consensus       338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~-------------I~iw  400 (660)
                      ||+.+++.                     + ....   .......++|+  |+.|+.++ +..             |++|
T Consensus       152 ~dl~tg~~---------------------~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~  207 (695)
T 2bkl_A          152 IDVDSGEW---------------------SKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH  207 (695)
T ss_dssp             EETTTCCB---------------------CSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred             EECCCCCC---------------------cCCccc---CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence            88766643                     1 1000   01112578899  78888887 665             9999


Q ss_pred             ECCCCe----EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC----eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          401 SLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       401 d~~~~~----~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~----~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      ++.++.    .+.....+...+..+.|+||| .|+.++.++    .|++||..+++ ...+..+...+....+ ++|.++
T Consensus       208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~  285 (695)
T 2bkl_A          208 TLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFY  285 (695)
T ss_dssp             ETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEE
T ss_pred             ECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEE
Confidence            998876    222223455678899999999 777666555    78888766554 4445555556666666 566644


Q ss_pred             EEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-CCceeeeecC
Q 006126          472 VSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLVP  546 (660)
Q Consensus       472 ~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~~~~~  546 (660)
                      +...   .++.|.+||+.++...   ....+...+..  ..+..++|+ ++.++++ ..|+..++|.+. +++....+..
T Consensus       286 ~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~  359 (695)
T 2bkl_A          286 VLTDEGAPRQRVFEVDPAKPARA---SWKEIVPEDSS--ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL  359 (695)
T ss_dssp             EEECTTCTTCEEEEEBTTBCSGG---GCEEEECCCSS--CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC
T ss_pred             EEECCCCCCCEEEEEeCCCCCcc---CCeEEecCCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC
Confidence            4433   2578999999875321   11212222211  457888888 5666666 477776666543 4555555543


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEe----cCCeEEEEECCCCee
Q 006126          547 DKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL  584 (660)
Q Consensus       547 ~~~~~~v~~~~~s~dg~~l~sg~----~dg~I~iwd~~~~~~  584 (660)
                      + ....+..++++|+++.++...    ..+.|++||+.+++.
T Consensus       360 ~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          360 P-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             S-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             C-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            2 256677888999998777433    347899999998874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=1.3e-12  Score=133.47  Aligned_cols=265  Identities=10%  Similarity=0.027  Sum_probs=177.4

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .|+|++..++..+.++.++.|..      .....  +..  +...+.+++|+|+|+.++++..++.|.+|+..++..   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---   78 (333)
T 2dg1_A           12 FYSGKSNSAVPIISESELQTITA------EPWLE--ISK--KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---   78 (333)
T ss_dssp             CSCGGGGCSSCCCCGGGSCEEEC------EEEEE--EES--SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---
T ss_pred             eecCCccceeEEeecccCccccc------ceeEE--Eec--cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---
Confidence            66777777777777888888832      22332  222  566789999999999777788889998887765543   


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C----CcEEEEECCCCeEEEEEc--CCCCCeE
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPPPIAT  419 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d----g~I~iwd~~~~~~~~~~~--~~~~~v~  419 (660)
                                        .....  .+...+.+++++  ++++++.. +    +.|.+||..++.....+.  .+...+.
T Consensus        79 ------------------~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  138 (333)
T 2dg1_A           79 ------------------KRPFV--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID  138 (333)
T ss_dssp             ------------------EEEEE--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred             ------------------EEEee--CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence                              11110  245679999998  66666665 4    589999998876654443  3445789


Q ss_pred             EEEEcCCC-eEEEEeC------CCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC-Cee
Q 006126          420 YFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG-WKK  490 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~-~~~  490 (660)
                      +++++|+| .+++...      .+.|..+|..+++... +..+...+..++|+|+|+.++. .+.++.|.+||+.+ +..
T Consensus       139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~  217 (333)
T 2dg1_A          139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT  217 (333)
T ss_dssp             EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence            99999999 5555543      3567777776555433 3333446789999999986654 45678999999964 221


Q ss_pred             eece--eeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC----CCCCeEEEEEccCCC
Q 006126          491 LCSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGK  563 (660)
Q Consensus       491 ~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~  563 (660)
                      ....  .......++    ..+..++++++|+++++. .++.|.+||. +++.+..+....    +...+.+++|+||++
T Consensus       218 ~~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          218 IQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             EEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             cccccceEEEecCCC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCC
Confidence            1110  000001111    257789999999977774 5689999998 577666664321    112588999999998


Q ss_pred             EEEEEecCC
Q 006126          564 CIYVSCKSG  572 (660)
Q Consensus       564 ~l~sg~~dg  572 (660)
                      .|+.++.++
T Consensus       293 ~L~v~~~~g  301 (333)
T 2dg1_A          293 QLIICSNDI  301 (333)
T ss_dssp             EEEEEEECG
T ss_pred             EEEEEeCcc
Confidence            887766653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=7.2e-13  Score=132.96  Aligned_cols=231  Identities=11%  Similarity=-0.044  Sum_probs=162.3

Q ss_pred             CCCCeEEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126          375 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK  449 (660)
Q Consensus       375 h~~~v~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~  449 (660)
                      +.....+++|+  ++ +++++. ++.|..||..++  ...+..+...+.+++++|+| ++++...++.|.+||..+++..
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            45567899999  66 566666 799999999887  66676777889999999999 7777667789999999888754


Q ss_pred             eEeecc----CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126          450 AKLKGH----QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  508 (660)
Q Consensus       450 ~~~~~~----~~~v~~l~~sp~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  508 (660)
                      ......    ...+..++++|+|+++++.+.                 .+.|..+|.. ++.      . ....+.   .
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~------~-~~~~~~---~  172 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL------S-APIRDR---V  172 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE------E-EEECCC---S
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE------E-EeecCC---C
Confidence            433221    235678999999998887321                 2355555544 221      1 112222   4


Q ss_pred             CeEEEEEecCCcEEEEE-ecCcEEEEeCC-CCce---eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          509 IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       509 ~v~~~~~sp~~~~l~~~-~d~~i~iwd~~-~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      ....++|+|+|+.+++. .++.|++||+. ++..   ...+ . .+...+..++++++|+++++.  ++.|.+||.. ++
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~  247 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD  247 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence            67899999999999554 67899999986 5554   2333 2 235567789999999977666  8899999987 77


Q ss_pred             eEEEeecccccCCCCcCcccceEEEEE-ecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          584 LRCQINLTAYAQPGTISLELYPLVIAA-HPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~-sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .+..+..+        ..   +.+++| +| +++.|.+++.++ +.-+++.+.+
T Consensus       248 ~~~~~~~~--------~~---~~~~~f~~~-d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          248 ELGRVLTP--------QT---TSNLCFGGP-EGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             EEEEEECS--------SC---CCEEEEEST-TSCEEEEEETTE-EEEEECSCCB
T ss_pred             EEEEEECC--------CC---ceeEEEECC-CCCEEEEEcCCe-EEEEEccccc
Confidence            66666532        22   338889 47 788888888764 4445555443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.58  E-value=2.5e-12  Score=131.14  Aligned_cols=268  Identities=12%  Similarity=0.020  Sum_probs=179.9

Q ss_pred             CCCcEEEEeccCcCCCcceeeeec---CCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEE
Q 006126          282 SLEKSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL  358 (660)
Q Consensus       282 ~dg~i~iwd~~~~~~~~~~~~~~l---~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~  358 (660)
                      .+++|.+||.++    .++....+   ...........+++. +++..++...++.|.+||..+.+.             
T Consensus        15 ~~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-------------   76 (328)
T 3dsm_A           15 SNATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-------------   76 (328)
T ss_dssp             CCBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-------------
T ss_pred             CCceEEEEECCC----CEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-------------
Confidence            378999999984    44332111   011123456778874 344445555578888887766543             


Q ss_pred             ecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe--CCcEEEEECCCCeEEEEEcCCC-----CCeEEEEEcCCCeEE
Q 006126          359 YQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPP-----PIATYFILLPQDLFA  430 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~-----~~v~~v~~sp~~~l~  430 (660)
                              +...   ........++++ +..+..+.  ++.|.+||..+++....+....     .....+++ .++.++
T Consensus        77 --------~~~i---~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly  144 (328)
T 3dsm_A           77 --------VGRI---TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY  144 (328)
T ss_dssp             --------EEEE---ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE
T ss_pred             --------EEEc---CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE
Confidence                    2211   123557889996 44555555  7999999999999887776332     13446666 444444


Q ss_pred             EEe--CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEEcCCCeeeeceeeee
Q 006126          431 FGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----------AQLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       431 s~~--~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~  498 (660)
                      ++.  .++.|.++|+.+++.+..+.. ......+.++|+|++++++..+          +.|.+||..+++......+  
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~--  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF--  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC--
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec--
Confidence            444  488999999999988887764 3345788899999877766554          7899999998654322111  


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc-CCCEEEEE----ecCCe
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVS----CKSGH  573 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg----~~dg~  573 (660)
                       ..+     .....++++|+++.++++.. .|.+||..+++................++++| ++...++.    ..++.
T Consensus       222 -~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~  294 (328)
T 3dsm_A          222 -KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI  294 (328)
T ss_dssp             -CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred             -CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence             111     35789999999999988644 99999998887642211111146788999999 45555555    56789


Q ss_pred             EEEEECCCCeeEEEeec
Q 006126          574 VKVFDTSTLELRCQINL  590 (660)
Q Consensus       574 I~iwd~~~~~~~~~~~~  590 (660)
                      |.+||.. ++.+..+..
T Consensus       295 V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          295 VYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             EEEECTT-CCEEEEEEE
T ss_pred             EEEECCC-CCEEEEEEe
Confidence            9999998 888888763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=5e-11  Score=119.13  Aligned_cols=273  Identities=7%  Similarity=-0.024  Sum_probs=187.4

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      ..+.+.++|+..++...++.|..||..     +....+.++.  +...+.+++++++|...++...++.|..|+.. +..
T Consensus        18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~   89 (299)
T 2z2n_A           18 YGITVSDKGKVWITQHKANMISCINLD-----GKITEYPLPT--PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII   89 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-----CCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cceEECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCCc--ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence            334788999988877778999999975     3344433332  45789999999999977776667888888764 211


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYF  421 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v  421 (660)
                                 ..+..          . .....+.++++.  +.++++.. ++.|..||. +++.... .......+..+
T Consensus        90 -----------~~~~~----------~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           90 -----------KEYTL----------P-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI  146 (299)
T ss_dssp             -----------EEEEC----------S-STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             -----------EEEeC----------C-CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence                       11110          0 134567888888  55555555 689999998 5554433 22345678899


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126          422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  499 (660)
                      ++.++| ..++...++.|..||. +++.... +......+.+++++++|+..++...++.|.+||. ++....   +.  
T Consensus       147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--  219 (299)
T 2z2n_A          147 TLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE---FK--  219 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE--
T ss_pred             EEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE---EE--
Confidence            999999 6666666789999998 6665432 2334567889999999998777767889999999 644211   11  


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      ...+.   ..+.+++++++|+..++. .++.|..||. ++. +..+....+...+.++++ ++|.+.++.. .+.|..++
T Consensus       220 ~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~  292 (299)
T 2z2n_A          220 IPTPN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT  292 (299)
T ss_dssp             CSSTT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred             CCCCC---CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence            11222   468899999999866665 6789999998 454 334432233567899999 8888777655 56788888


Q ss_pred             CCCCe
Q 006126          579 TSTLE  583 (660)
Q Consensus       579 ~~~~~  583 (660)
                      ..+++
T Consensus       293 ~~~~~  297 (299)
T 2z2n_A          293 LIKDN  297 (299)
T ss_dssp             EC---
T ss_pred             cCccc
Confidence            77654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.56  E-value=1.9e-12  Score=129.85  Aligned_cols=235  Identities=10%  Similarity=0.035  Sum_probs=166.2

Q ss_pred             CCCCeEEEEEecCCC-EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +.....+++|+|+|+ .++++..++.|..|+..++ .           ..+.             .+...+.+++++  |
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~~-------------~~~~~~~~l~~~~dg   80 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPEM-------------HPSHHQNGHCLNKQG   80 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEEE-------------SSCSSEEEEEECTTC
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEEE-------------CCCCCcceeeECCCC
Confidence            456788999999998 6677777889988876554 2           1111             355668899998  6


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCC-eEEEE----e-------------CCCeEEEEeC
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFG----F-------------DDSSILVHCP  443 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~~sp~~-~l~s~----~-------------~d~~I~iwd~  443 (660)
                      .++++.. ++.|.+||..+++........    ...+..++++|+| ++++.    +             ..+.|..++.
T Consensus        81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~  160 (296)
T 3e5z_A           81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP  160 (296)
T ss_dssp             CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred             cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence            6666555 689999999888765443321    2345679999999 66663    2             1346777776


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCee-eeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  521 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  521 (660)
                      . ++ ...+..+......++|+|+|+.+++.+.++.|.+||+. ++.. ...   . ....+.   ..+..++++++|++
T Consensus       161 ~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~---~-~~~~~~---~~p~~i~~d~~G~l  231 (296)
T 3e5z_A          161 D-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG---V-HFTVEP---GKTDGLRVDAGGLI  231 (296)
T ss_dssp             T-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE---E-EECCSS---SCCCSEEEBTTSCE
T ss_pred             C-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC---e-EeeCCC---CCCCeEEECCCCCE
Confidence            5 44 34455566778999999999999777778999999997 4332 111   1 111222   45678999999987


Q ss_pred             EEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE-ccCCCEEEEEecCCeEEEEECCCCee
Q 006126          522 LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLEL  584 (660)
Q Consensus       522 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~dg~~l~sg~~dg~I~iwd~~~~~~  584 (660)
                      .++. ++.|.+||.. ++.+..+...  .. +.+++| +|+++.|++++.+ .+.-++..+.++
T Consensus       232 ~v~~-~~~v~~~~~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          232 WASA-GDGVHVLTPD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEE-TTEEEEECTT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EEEc-CCeEEEECCC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            7667 8899999985 7777777653  44 889999 5899999988875 466667766654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=3.3e-12  Score=130.54  Aligned_cols=281  Identities=13%  Similarity=0.076  Sum_probs=186.9

Q ss_pred             EecCCCCEEEEEeC-----CCcEEEEeccCcCCCcce-eeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CC
Q 006126          269 TSLPDADSAVCAKS-----LEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QT  332 (660)
Q Consensus       269 ~~spdg~~l~s~~~-----dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~~spdg~~l~s~s----------~d  332 (660)
                      ...||++.++....     ++.|.+.|..+    .+. ..+..    -..+  .++++|||++++.+.          .+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t----~~v~~~I~v----G~~P--~va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGMIDG----GFLP--NPVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT----TEEEEEEEE----CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCC----CeEEEEEEC----CCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence            56799998888765     67899999874    333 33221    1223  499999999887765          24


Q ss_pred             CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCC-----CCCCeEEEEEe--CCEEEEEe---CCcEEEEEC
Q 006126          333 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSL  402 (660)
Q Consensus       333 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~  402 (660)
                      +.|.+||..+.+.                     +.......     .......++++  |++++++.   ++.|.++|+
T Consensus       109 ~~VsviD~~t~~v---------------------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~  167 (386)
T 3sjl_D          109 DYVEVFDPVTLLP---------------------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  167 (386)
T ss_dssp             EEEEEECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             CEEEEEECCCCeE---------------------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence            6677777665543                     22111100     11234567888  88877775   478999999


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-CceeeEeecc----CCCeE-EEEEe-CCCCEEEE
Q 006126          403 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT-CLAYS-LSLNVLVS  473 (660)
Q Consensus       403 ~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~~~~~~----~~~v~-~l~~s-p~~~~l~s  473 (660)
                      .+++.+.++....    |..+.|.+  .+++.+.||.+.+.++.+ ++.......+    ..++. ...|. ++|++++ 
T Consensus       168 ~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-  242 (386)
T 3sjl_D          168 EGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-  242 (386)
T ss_dssp             TTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred             CCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence            9999999886432    22334544  777888899999999876 5543222111    12222 23564 5775444 


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeee--e---eeeccCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCC
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPT  537 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~--~---~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----------d~~i~iwd~~~  537 (660)
                      .+.+|.+.+.|+.++.......+.  .   ...+-.+  .....++++|+++.+++. .          .+.|.++|+.+
T Consensus       243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t  320 (386)
T 3sjl_D          243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  320 (386)
T ss_dssp             EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence            667899999999775421111111  0   0011111  234468889999998884 2          25799999999


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEECCCCeeEEEeec
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      ++.+..+..   ...+.++++++|++ +|++.. .++.|.++|..+++.+..+..
T Consensus       321 ~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          321 GERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             CCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence            999999876   45788999999997 676654 489999999999999998875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=1.9e-12  Score=127.73  Aligned_cols=236  Identities=12%  Similarity=0.034  Sum_probs=162.0

Q ss_pred             CeEEEEEe--CCEEEEE-e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          378 SISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~-~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      ...+++++  +++++++ . ++.|.+||..++............+.+++++++| .+++.. ++.|.+||...+.. ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence            67888998  6655524 4 6899999986654332222333567789999999 555555 88999999876543 333


Q ss_pred             e-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 006126          453 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI  530 (660)
Q Consensus       453 ~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i  530 (660)
                      . .....+.+++++++|+.+++...++.|.+||..+....     . ......   ..+..++++|+|+.+++. .++.|
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i  173 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-----V-LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV  173 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-----E-CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-----e-eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence            2 23357899999999998887777899999976553211     1 111111   357789999999866664 56899


Q ss_pred             EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126          531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA  610 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~  610 (660)
                      .+||............  +...+..++++++|.++++...++.|.+|+........ ...      ++ .  -.+.++++
T Consensus       174 ~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~------~~-~--~~p~~i~~  241 (270)
T 1rwi_B          174 VKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF------TG-L--NTPLAVAV  241 (270)
T ss_dssp             EEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC------CS-C--SCEEEEEE
T ss_pred             EEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc------CC-C--CCceeEEE
Confidence            9999876654333221  23678899999999877777778899999987654332 111      11 1  12448999


Q ss_pred             ecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          611 HPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       611 sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +| +|+++++...+++|+++++...+.
T Consensus       242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          242 DS-DRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence            99 789999999999999999987643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.52  E-value=6.2e-11  Score=122.63  Aligned_cols=283  Identities=8%  Similarity=-0.008  Sum_probs=185.1

Q ss_pred             EecCCCCEEEEEeC--CC---cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CC
Q 006126          269 TSLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TA  333 (660)
Q Consensus       269 ~~spdg~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg  333 (660)
                      ...|++++++.+..  ..   +|.++|..+    .+... +++.  -..+  .++|||||++++.+..          ++
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t----~~~~~-~i~~--g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGS----GSILG-HVNG--GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCC----CeEEE-EecC--CCCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence            34578887777664  23   789999874    33332 2332  1223  9999999999988862          56


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCC-CCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQT  407 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~  407 (660)
                      .|.+||..+.+....          .... .+..       .+......+.|+  |++|++++   ++.|.++| .+++.
T Consensus        98 ~v~viD~~t~~~~~~----------i~~~~~~~~-------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~  159 (373)
T 2mad_H           98 YVEVFDPVTFLPIAD----------IELPDAPRF-------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS  159 (373)
T ss_pred             eEEEEECCCCcEEEE----------EECCCcccc-------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE
Confidence            788888765543111          0000 0000       011234578888  88888776   36899999 99998


Q ss_pred             EEE-EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee-----ccCCCe-EEEEEeCCCCEEEEEeCCC
Q 006126          408 LAT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRI-TCLAYSLSLNVLVSSGADA  478 (660)
Q Consensus       408 ~~~-~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~-----~~~~~v-~~l~~sp~~~~l~s~s~dg  478 (660)
                      +.. +....    ++.+.|++  .+++.+.||.+.++|. +++......     ....++ ....+.+++..++..+..+
T Consensus       160 ~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  234 (373)
T 2mad_H          160 DDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG  234 (373)
T ss_pred             EeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc
Confidence            887 65322    35566776  6677788999999999 887663322     111221 2345677666655556788


Q ss_pred             cEEEEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCCCceee
Q 006126          479 QLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTS  542 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~  542 (660)
                      .+.+.|+.+........+..     ...+..+  .....+.++|+++.+++. .          ++.|.++|+.+++.+.
T Consensus       235 ~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~  312 (373)
T 2mad_H          235 KILQADISAAGATNKAPIDALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             eEEEEeccCCcceEeeeeeecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence            99999997643211111110     0001111  234558899999988874 2          2579999999999999


Q ss_pred             eecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEECCCCeeEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~-~l~sg~-~dg~I~iwd~~~~~~~~~~  588 (660)
                      ++..   .....+++|+|||+ .++++. .++.|.+||+.+++.+..+
T Consensus       313 ~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          313 QISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            8865   44688999999999 777776 4899999999999988774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=1.6e-12  Score=147.92  Aligned_cols=282  Identities=13%  Similarity=0.010  Sum_probs=171.4

Q ss_pred             EecCCCCEEEEEeCCCc---EEEEeccCcC-CCcceeee-ec--CCCCCCCCeEEEEEecCCCEEEEEECC-C----cEE
Q 006126          269 TSLPDADSAVCAKSLEK---SVNLKLQLIN-EPSECRTL-LL--PDNSFGGRVVRLIYSHSGDFLVALTQT-A----THK  336 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~---i~iwd~~~~~-~~~~~~~~-~l--~~~~h~~~V~~~~~spdg~~l~s~s~d-g----~i~  336 (660)
                      ..+|||++++....++.   -.+|...... ..+....+ ..  -..+|...+..++|||||++||.++.+ |    .|+
T Consensus       113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            44589999887776543   6677654210 00111211 00  012244578899999999999987764 3    477


Q ss_pred             EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CC--------------cEEEE
Q 006126          337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG--------------KISIF  400 (660)
Q Consensus       337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg--------------~I~iw  400 (660)
                      +||+.+++.                     +....   +...+..++|+ ++.|+.+. ++              .|++|
T Consensus       193 v~dl~tg~~---------------------~~~~~---~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~  248 (741)
T 1yr2_A          193 FVGVADGKP---------------------LADEL---KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLH  248 (741)
T ss_dssp             EEETTTCCE---------------------EEEEE---EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEE
T ss_pred             EEECCCCCC---------------------CCccC---CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEE
Confidence            777766653                     11100   11112345676 55566555 43              38999


Q ss_pred             ECCCCeE--EEEEcC--CCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCC--ceeeEeeccCCCeEEEEEeCCC
Q 006126          401 SLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTK--KTKAKLKGHQNRITCLAYSLSL  468 (660)
Q Consensus       401 d~~~~~~--~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~  468 (660)
                      ++.++..  ...+..  +...+..+.|+||| .|+..+.+     ..|++||+.++  +....+..+...+... ++|+|
T Consensus       249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg  327 (741)
T 1yr2_A          249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVG  327 (741)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEET
T ss_pred             ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccC
Confidence            9987652  223332  33458899999999 77666644     38999999877  3145565555555555 45899


Q ss_pred             CEEEEEeCC----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-CCceee
Q 006126          469 NVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTS  542 (660)
Q Consensus       469 ~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~  542 (660)
                      +.|+..+.+    +.|.+||+.++.    .....+...+.   ..+..+.++ ++.++++ ..++..+||.+. +++...
T Consensus       328 ~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          328 DQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             TEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred             CEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence            988887764    459999998742    01121333333   456677787 4555555 467765555433 466566


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEe----cCCeEEEEECCCCee
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL  584 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~----~dg~I~iwd~~~~~~  584 (660)
                      .+..+ +...+..++++|+++.++...    ..+.|++||+.+++.
T Consensus       400 ~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          400 AVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            65432 256788899999998666332    347899999998873

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=3.9e-12  Score=125.44  Aligned_cols=235  Identities=9%  Similarity=0.001  Sum_probs=162.2

Q ss_pred             CeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          313 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       313 ~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      ...+++++++|+.++ +.+.++.|.+|+..+...           ..+.            ..+...+.+++++  +. +
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~------------~~~~~~p~~i~~~~~g~-l   80 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------TVLP------------FNGLYQPQGLAVDGAGT-V   80 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC----------------EECC------------CCSCCSCCCEEECTTCC-E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------ceEe------------eCCcCCcceeEECCCCC-E
Confidence            788999999999666 446678898887544322           0000            0233456788888  55 4


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126          390 FSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp  466 (660)
                      +.+. ++.|.+||....... .+. .....+..++++++| .+++...++.|.+|+..+.............+.++++++
T Consensus        81 ~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~  159 (270)
T 1rwi_B           81 YVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN  159 (270)
T ss_dssp             EEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred             EEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Confidence            4444 889999998765433 333 333568899999999 777777788999998665543322222334678899999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec
Q 006126          467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~  545 (660)
                      +|+.+++...++.|.+||..+.....      ....+.   ..+..++++++|..+++. .++.|.+||....... ...
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~~~~~------~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~  229 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESNNQVV------LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP  229 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEEE------CCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECC
T ss_pred             CCCEEEEECCCCEEEEEecCCCceEe------ecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eec
Confidence            99977777778899999988743211      111121   368899999999766665 5789999998654432 222


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      . .+...+.+++++++|+++++...++.|++|++...+
T Consensus       230 ~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          230 F-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             C-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             c-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            1 123578999999999988888889999999987654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.51  E-value=2.3e-10  Score=114.35  Aligned_cols=283  Identities=8%  Similarity=0.006  Sum_probs=189.0

Q ss_pred             eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126          300 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI  379 (660)
Q Consensus       300 ~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  379 (660)
                      +..+.++.  ....+.++++.++|+..++...++.|.+|+.. +..           ..+.          .. .+...+
T Consensus        10 ~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------~~~~----------~~-~~~~~~   64 (300)
T 2qc5_A           10 LEEFNLSI--PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------KEFE----------VP-TPDAKV   64 (300)
T ss_dssp             EEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------EEEE----------CS-STTCCE
T ss_pred             EEEEecCC--CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------EEEE----------CC-CCCCcc
Confidence            33444443  46789999999999977776678889888765 322           1111          10 233568


Q ss_pred             EEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-ee
Q 006126          380 SCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LK  453 (660)
Q Consensus       380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~  453 (660)
                      .++++.  +..+++.. ++.|..||.. ++.... .......+.++++.++| ++++...++.|..+|.. ++.... +.
T Consensus        65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  142 (300)
T 2qc5_A           65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP  142 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence            888888  55555555 6889999988 655322 22244678899999999 66666668899999987 655422 23


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEE
Q 006126          454 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV  532 (660)
Q Consensus       454 ~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~i  532 (660)
                      .....+.++++.++|+..++...++.|..||. +++...   +.  ...+.   ..+..++++++|...++. ..+.|.+
T Consensus       143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP--LPTNA---AAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee--CCCCC---CCcceEEECCCCCEEEEccCCCEEEE
Confidence            34567899999999997776666789999998 433211   11  11222   468899999999877775 5678999


Q ss_pred             EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126          533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp  612 (660)
                      ||. +++....... .....+.+++++++|++.++...++.|..|+. +++.. .+...    .+  ...  +.++++.|
T Consensus       214 ~~~-~g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~----~~--~~~--~~~i~~~~  281 (300)
T 2qc5_A          214 ITT-TGEISEYDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ----TE--NAE--PHGITFGK  281 (300)
T ss_dssp             ECT-TCCEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC----ST--TCC--CCCEEECT
T ss_pred             EcC-CCcEEEEECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC----cc--CCc--cceeEeCC
Confidence            998 5554433222 23567899999999997777666789999998 45433 22211    01  122  33788999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCC
Q 006126          613 LEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       613 ~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                       +|.++++.. . .|..+++.
T Consensus       282 -~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          282 -DGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             -TSCEEEECS-S-EEEEEEEC
T ss_pred             -CCCEEEEcc-C-ceEEeCCC
Confidence             788766654 4 67777653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=6e-12  Score=124.62  Aligned_cols=232  Identities=13%  Similarity=0.013  Sum_probs=172.0

Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC-CCeEEEEEe--CCEEEEEeCCcEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSASGGKIS  398 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s--~~~l~s~~dg~I~  398 (660)
                      .++.|++++.|+.|.+||.++++.            +|....           +. ..+.++.+.  |++++ +.++.|.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~------------~w~~~~-----------~~~~~~~~~~~~pdG~ilv-s~~~~V~   59 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI------------VWEYPL-----------EKGWECNSVAATKAGEILF-SYSKGAK   59 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE------------EEEEEC-----------CTTCCCCEEEECTTSCEEE-ECBSEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE------------EEEeCC-----------CccCCCcCeEECCCCCEEE-eCCCCEE
Confidence            457889999999999998877764            454221           22 356777887  77777 4478899


Q ss_pred             EEECCCCeEEEEEcCC-CCCeEEEEEcCCC-eEEEEeC-CCeEEEEeCCCCceeeEeec------cCCCeEEEEEeCCCC
Q 006126          399 IFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKG------HQNRITCLAYSLSLN  469 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~-d~~I~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~  469 (660)
                      .||. +|+.+..+..+ ...+.++.+.++| .+++.+. ++.|..+|. +|+.+..+..      +......+.+.++|+
T Consensus        60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~  137 (276)
T 3no2_A           60 MITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN  137 (276)
T ss_dssp             EECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred             EECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC
Confidence            9999 89999998865 3578899999999 8888777 788888886 6777766642      223455667899999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC
Q 006126          470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK  548 (660)
Q Consensus       470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  548 (660)
                      ++++.+.++.|..||.. |+.+......          ..+.++.+.++|..++++ .++.|..+|..+|+.+.++....
T Consensus       138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~  206 (276)
T 3no2_A          138 YLVPLFATSEVREIAPN-GQLLNSVKLS----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND  206 (276)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEEECS----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred             EEEEecCCCEEEEECCC-CCEEEEEECC----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence            99999999999999998 6654332221          345678889999999885 56689999999999988875321


Q ss_pred             ----CCCCeEEEEEccCCCEEEEEecC--------CeEEEEEC-CCCeeEEEeec
Q 006126          549 ----MDLPITYATYSCDGKCIYVSCKS--------GHVKVFDT-STLELRCQINL  590 (660)
Q Consensus       549 ----~~~~v~~~~~s~dg~~l~sg~~d--------g~I~iwd~-~~~~~~~~~~~  590 (660)
                          .-..+..++..++|..+++....        +..+++++ .+|+.+..+..
T Consensus       207 ~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          207 IEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             SBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             CCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence                12337888899999998887421        24466766 57888888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.49  E-value=1.5e-10  Score=119.71  Aligned_cols=237  Identities=13%  Similarity=0.089  Sum_probs=159.5

Q ss_pred             EEEEe--CCEEEEEe-----------CCcEEEEECCCCeEEEEEcCC-------CCCeEEEEEcCCC-eEEEEeC--CCe
Q 006126          381 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS  437 (660)
Q Consensus       381 ~v~~s--~~~l~s~~-----------dg~I~iwd~~~~~~~~~~~~~-------~~~v~~v~~sp~~-~l~s~~~--d~~  437 (660)
                      .++++  +++++.+.           ++.|.+||..+++.+.++...       ...-..+.|+||| +|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            78888  77777764           467999999998888776532       1234578999999 7777764  578


Q ss_pred             EEEEeCCCCceeeE-eeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126          438 ILVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF  515 (660)
Q Consensus       438 I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  515 (660)
                      |.++| .+++.+.. +.. .+   ++.+.|++ +.+++.+.||.+.++|. +++............+..   .......+
T Consensus       150 v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~~  220 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPAQ  220 (373)
T ss_pred             EEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeeccee
Confidence            99999 99988877 542 22   24455655 45667778999999999 765432111100111111   11233556


Q ss_pred             ecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCC--------CCCCeEEEEEccCCCEEEEEec----------CCeE
Q 006126          516 HPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYVSCK----------SGHV  574 (660)
Q Consensus       516 sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~--------~~~~v~~~~~s~dg~~l~sg~~----------dg~I  574 (660)
                      .+++..++. +.++.+.+.|+..+.  .+..+....        .......+.++||++.++++..          ++.|
T Consensus       221 ~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V  300 (373)
T 2mad_H          221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             EecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence            776655444 677899999986543  222221100        0122444789999998887653          3579


Q ss_pred             EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEe-CCCeEEEEeCCCCcee
Q 006126          575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE  638 (660)
Q Consensus       575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s-~Dg~v~iw~~~~~~~~  638 (660)
                      .++|+.+++.+..+..      |   ...+  +++|+| ||+ .++++. .++.|.+||..+++..
T Consensus       301 ~VID~~t~~vv~~i~~------g---~~p~--~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          301 TSVTGLVGQTSSQISL------G---HDVD--AISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEECCCCEEEEEEEC------C---CCcC--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            9999999999888864      2   2233  899999 888 677776 5899999999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=3.1e-11  Score=121.81  Aligned_cols=234  Identities=12%  Similarity=0.052  Sum_probs=160.4

Q ss_pred             CCCeEEEEEe--CCEEEE-------Ee-CCcEEEEECCCCeEEEEEc----CCCCCeEEEEEcCC-CeEEEEeCCCeEEE
Q 006126          376 KDSISCFALR--GSHLFS-------AS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQ-DLFAFGFDDSSILV  440 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s-------~~-dg~I~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~-~~l~s~~~d~~I~i  440 (660)
                      -....+++|+  +..+++       +. ++.|.+||..+++......    ++...+.+++++++ |.+..++..+.|.+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            3456788998  666666       34 8899999998887643322    24467889999999 74444554558999


Q ss_pred             EeCCCCceeeE-eec----cCCCeEEEEEeCCCCEEEEEeCC---------------CcEEEEEcCCCeeeeceeeeeee
Q 006126          441 HCPCTKKTKAK-LKG----HQNRITCLAYSLSLNVLVSSGAD---------------AQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       441 wd~~~~~~~~~-~~~----~~~~v~~l~~sp~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      ||.. ++.... ...    ....+.+++++++|+++++...+               +.|..||.. ++..   .   ..
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~---~---~~  168 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI---Q---VD  168 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE---E---EE
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE---E---ec
Confidence            9988 765433 221    12458899999999888776654               567777765 3321   1   11


Q ss_pred             eccCCCCCCeEEEEEe----cCCcEEEEE--ecCcEEEEeCC-CCce-----eeeecCCCCC-CCeEEEEEccCCCEEEE
Q 006126          501 TGLVPETTIVNHIQFH----PDQIHLLSI--HEGQIDVYEAP-TLNH-----TSQLVPDKMD-LPITYATYSCDGKCIYV  567 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~s----p~~~~l~~~--~d~~i~iwd~~-~~~~-----~~~~~~~~~~-~~v~~~~~s~dg~~l~s  567 (660)
                      . +.   .....++++    |+++.++++  .++.|.+||.. +++.     ...+.  .+. ..+..++++++|+++++
T Consensus       169 ~-~~---~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~  242 (314)
T 1pjx_A          169 T-AF---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             E-EE---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEEE
T ss_pred             c-CC---CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEEE
Confidence            1 11   356789999    999876663  56899999986 4432     22221  122 56788999999998888


Q ss_pred             EecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEeCCCeEEEEeCCC
Q 006126          568 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       568 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s~Dg~v~iw~~~~  634 (660)
                      ...++.|.+||..+++....+..+        ..  .+.+++|+| +++ ++++...++.|..|++..
T Consensus       243 ~~~~~~i~~~d~~~g~~~~~~~~~--------~~--~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQPKMRIRCP--------FE--KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECS--------SS--CEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred             EcCCCEEEEEcCCCCcEeEEEeCC--------CC--CceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence            888899999999878766655421        22  244899999 788 455555678999999875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.48  E-value=6.1e-12  Score=129.09  Aligned_cols=215  Identities=16%  Similarity=0.147  Sum_probs=142.4

Q ss_pred             eEEEEEeCCEEEEEe----------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---C--eEEEEe
Q 006126          379 ISCFALRGSHLFSAS----------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S--SILVHC  442 (660)
Q Consensus       379 v~~v~~s~~~l~s~~----------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~--~I~iwd  442 (660)
                      +..+.+.|++++...          ++.|.+||+.+++... +    ..+..+.|+||| .|+.++.+   +  .|++||
T Consensus        17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~   91 (347)
T 2gop_A           17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD   91 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred             cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence            445555666665431          4679999999887543 3    457889999999 77776643   3  488889


Q ss_pred             CCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC---------------------------CcEEEEEcCCCeeeecee
Q 006126          443 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---------------------------AQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       443 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---------------------------g~i~vwd~~~~~~~~~~~  495 (660)
                      +.+++....... .. +..+.|+|||+.|+.++.+                           ..|++||+.+++..  ..
T Consensus        92 ~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~--~~  167 (347)
T 2gop_A           92 LETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI--EE  167 (347)
T ss_dssp             TTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE--EE
T ss_pred             CCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE--ee
Confidence            988876554443 34 9999999999998887642                           56999999886531  11


Q ss_pred             eeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec------C---cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126          496 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE------G---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI  565 (660)
Q Consensus       496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d------~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  565 (660)
                      +.   ..      .+..++|+||| +++++ .+      .   .|+++|  +++. ..+..  + ..+..+  +|||++|
T Consensus       168 l~---~~------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~--~-~~~~~~--spdg~~l  229 (347)
T 2gop_A          168 FE---KP------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFE--K-VSFYAV--DSDGERI  229 (347)
T ss_dssp             EE---EE------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEE--E-ESEEEE--EECSSCE
T ss_pred             ec---CC------CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEecc--C-cceeeE--CCCCCEE
Confidence            22   11      26688999999 66654 32      1   355555  4443 34432  2 344443  9999998


Q ss_pred             EEEecC--------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEE-EEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          566 YVSCKS--------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV-IAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       566 ~sg~~d--------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~-v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      +.++.+        ..|++||  +++......       ++ ...  +.. +.|+  |+ ++++++.|+.++|| +.+++
T Consensus       230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-------~~-~~~--~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILD-------EV-DRG--VGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             EEEECCSSSCCCSSCEEEEEC--SSCEEESST-------TC-CSE--EEEEEEET--TE-EEEEEEETTEEEEE-EESSS
T ss_pred             EEEEccccCCccccceEEEEC--CCceEeccc-------cC-Ccc--cCCccEEc--Cc-EEEEEecCCcEEEE-EcCCc
Confidence            887754        3688888  555433221       21 222  334 7887  56 89999999999999 87544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=6.6e-12  Score=142.86  Aligned_cols=282  Identities=11%  Similarity=0.040  Sum_probs=171.7

Q ss_pred             ecCCCEEEEEECCCc---EEEEeccCC---ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEE
Q 006126          320 SHSGDFLVALTQTAT---HKLWKWQSN---KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS  391 (660)
Q Consensus       320 spdg~~l~s~s~dg~---i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s  391 (660)
                      +|+|++++....++.   -.+|.....   ..        ....+.|++.       +..+|...+..++|+  |++|+.
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~lld~~~-------l~~~~~~~~~~~~~SPDG~~la~  179 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGT--------KGRVLLDPNT-------WAKDGATALDAWAASDDGRLLAY  179 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTC--------CCEEEECGGG-------CC----EEEEEEEECTTSSEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCC--------CCEEEECHHH-------hccCCCEEEEeEEECCCCCEEEE
Confidence            489999887776543   555654321   00        0012222211       111344467889999  888887


Q ss_pred             Ee-C-C----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCC--------------eEEEEeCCCCce--e
Q 006126          392 AS-G-G----KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS--------------SILVHCPCTKKT--K  449 (660)
Q Consensus       392 ~~-d-g----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~--------------~I~iwd~~~~~~--~  449 (660)
                      +. + |    .|++||+.+++.+.... +...+..++|+||..|+.++.++              .|++|++.++..  .
T Consensus       180 ~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~  258 (741)
T 1yr2_A          180 SVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ  258 (741)
T ss_dssp             EEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE
T ss_pred             EEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE
Confidence            76 2 3    59999999998765321 11123478899997344444443              399999987752  2


Q ss_pred             eEeec--cCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          450 AKLKG--HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       450 ~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                      ..+..  +...+..+.|+|||++|+..+.++     .|++||+.++..   .....+. .+.   ..+... ++|+|..|
T Consensus       259 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~-~~~---~~~~~~-~~~dg~~l  330 (741)
T 1yr2_A          259 PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALI-PDL---KAQWDF-VDGVGDQL  330 (741)
T ss_dssp             EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEE-CSS---SSCEEE-EEEETTEE
T ss_pred             EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEec-CCC---CceEEE-EeccCCEE
Confidence            23332  334688999999999988877544     799999987521   1022122 222   233444 35889888


Q ss_pred             EE-Ee----cCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC-CCeeEEEeecccccC
Q 006126          523 LS-IH----EGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQ  595 (660)
Q Consensus       523 ~~-~~----d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~  595 (660)
                      +. +.    ++.|.+||+.++ .....+... +...+..++|+ ++.++++...|+..+||.+. +++....+..+    
T Consensus       331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~----  404 (741)
T 1yr2_A          331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP----  404 (741)
T ss_dssp             EEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS----
T ss_pred             EEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC----
Confidence            87 43    345999999875 233444332 34556678887 66778888889887777554 35544444321    


Q ss_pred             CCCcCcccceEEEEEecCCCCEEE-EEe---CCCeEEEEeCCCCce
Q 006126          596 PGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV  637 (660)
Q Consensus       596 ~gh~~~~v~~~~v~~sp~d~~~l~-s~s---~Dg~v~iw~~~~~~~  637 (660)
                       +  .  ..+..++++| ++..++ +.+   ..++|++||+.+++.
T Consensus       405 -~--~--~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          405 -G--I--GSASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             -S--S--CEEEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             -C--C--eEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             1  2  2344889999 666544 333   348999999988775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=2.2e-11  Score=124.46  Aligned_cols=282  Identities=12%  Similarity=0.006  Sum_probs=185.1

Q ss_pred             EEEecCCCEEEEEEC-----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          317 LIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       317 ~~~spdg~~l~s~s~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      ....|+++.++....     ++.|.+.|..+.+                     .+...-. +.. + . ++++  |+++
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~---------------------v~~~I~v-G~~-P-~-va~spDG~~l   92 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------VIGMIDG-GFL-P-N-PVVADDGSFI   92 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------EEEEEEE-CSS-C-E-EEECTTSSCE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe---------------------EEEEEEC-CCC-C-c-EEECCCCCEE
Confidence            445789988887765     4567666655443                     3322211 222 2 3 8888  7766


Q ss_pred             EEEe-----------CCcEEEEECCCCeEEEEEcCCC-------CCeEEEEEcCCC-eEEEEeC--CCeEEEEeCCCCce
Q 006126          390 FSAS-----------GGKISIFSLETFQTLATFANPP-------PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT  448 (660)
Q Consensus       390 ~s~~-----------dg~I~iwd~~~~~~~~~~~~~~-------~~v~~v~~sp~~-~l~s~~~--d~~I~iwd~~~~~~  448 (660)
                      ++++           ++.|.+||..+++.+.++....       ..-..++++||| +++++..  ++.|.++|+.+++.
T Consensus        93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v  172 (386)
T 3sjl_D           93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  172 (386)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence            5553           4689999999999988875321       234578999999 7777653  68999999999999


Q ss_pred             eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCe-EEEEEe-cCCcEEEEE
Q 006126          449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIV-NHIQFH-PDQIHLLSI  525 (660)
Q Consensus       449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s-p~~~~l~~~  525 (660)
                      +.++....  . ...+....+.+++.+.||++.+.++.+ ++...... . ......   ..+ ....|. ++|++++++
T Consensus       173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~-~~~~~~---~~~~~~~~~~~~dG~~~~vs  244 (386)
T 3sjl_D          173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-E-VFHPED---EFLINHPAYSQKAGRLVWPT  244 (386)
T ss_dssp             EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-C-CCSCTT---SCBCSCCEEETTTTEEEEEB
T ss_pred             EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-c-eecccc---ccccccceeEcCCCcEEEEe
Confidence            98885322  1 122333456777888899999999876 44321110 1 111100   122 224664 788877777


Q ss_pred             ecCcEEEEeCCCCc--eeeeec--------CCCCCCCeEEEEEccCCCEEEEEec----------CCeEEEEECCCCeeE
Q 006126          526 HEGQIDVYEAPTLN--HTSQLV--------PDKMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELR  585 (660)
Q Consensus       526 ~d~~i~iwd~~~~~--~~~~~~--------~~~~~~~v~~~~~s~dg~~l~sg~~----------dg~I~iwd~~~~~~~  585 (660)
                      .+|.|++.|+.+..  .+..+.        ..-.......++++++++.++....          .+.|.++|+.+++.+
T Consensus       245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~  324 (386)
T 3sjl_D          245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL  324 (386)
T ss_dssp             TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence            88999999997654  333332        0001122334777999998888653          257999999999999


Q ss_pred             EEeecccccCCCCcCcccceEEEEEecCCCC-EEEEE-eCCCeEEEEeCCCCceeccCCC
Q 006126          586 CQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALG-LTNGRVHVIEPLESEVEWGKLP  643 (660)
Q Consensus       586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~-s~Dg~v~iw~~~~~~~~w~~~~  643 (660)
                      ..+..         ....+  .++++| |++ +|.++ ..++.|.++|..+++..-....
T Consensus       325 ~~i~v---------g~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          325 AKFEM---------GHEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             EEEEE---------EEEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEEEC---------CCCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence            98875         23455  899999 775 66554 5589999999999987544433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.46  E-value=5.2e-10  Score=111.74  Aligned_cols=269  Identities=12%  Similarity=0.048  Sum_probs=183.6

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .+.+.++|+..++...++.|.+||..     +.+..+.++.  +...+.++++.++|...++...++.|..|+.. +.. 
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-   94 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-   94 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC-----CceEEEECCC--CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence            34778999988887788999999975     3344444433  45789999999999977766667888887765 322 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFI  422 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~  422 (660)
                                ..+.          .. .....+.++++.  +.++++.. ++.|..||.. ++.... +......+.+++
T Consensus        95 ----------~~~~----------~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~  152 (300)
T 2qc5_A           95 ----------TEYP----------LP-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT  152 (300)
T ss_dssp             ----------EEEE----------CS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred             ----------EEec----------CC-CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence                      1111          10 133567888888  66666555 6899999987 655432 333456788999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126          423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      +.++| ..++...++.|..+|. +++.... ...+...+.++.++++|+..++....+.|.+||. ++....   ..  .
T Consensus       153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~  225 (300)
T 2qc5_A          153 LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE---YD--I  225 (300)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE--C
T ss_pred             ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE---EE--C
Confidence            99999 6666666789999998 5554432 2234457889999999987777667788999998 433211   11  1


Q ss_pred             eccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          501 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       501 ~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      ..+.   ..+.+++++++|+..++. .++.|..||. +++.. .+........+.+++++++|++.++.. . .|..+|.
T Consensus       226 ~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          226 PTPN---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             SSTT---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCC---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            1122   468899999999866665 5689999998 55443 332222345688999999998666655 4 7777775


Q ss_pred             C
Q 006126          580 S  580 (660)
Q Consensus       580 ~  580 (660)
                      +
T Consensus       299 ~  299 (300)
T 2qc5_A          299 N  299 (300)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.43  E-value=3.7e-11  Score=125.09  Aligned_cols=278  Identities=13%  Similarity=0.078  Sum_probs=183.9

Q ss_pred             CCCCEEEEEeCC-----CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCcEE
Q 006126          272 PDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHK  336 (660)
Q Consensus       272 pdg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s----------~dg~i~  336 (660)
                      |+++.++.+...     +.|.+.|..+   ......+...    ..+  .++++|||++++.+.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST---GRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC---CEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            566766655543     6899999985   2333333321    233  899999999888776          355677


Q ss_pred             EEeccCCceeeeeeccceeEEEecCCCCceeeecccC--C---CCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCe
Q 006126          337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLETFQ  406 (660)
Q Consensus       337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~  406 (660)
                      ++|..+.+.                     +......  .   .......+.++  |++++++.   ++.|.+.|+.+++
T Consensus       153 viD~~t~~v---------------------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k  211 (426)
T 3c75_H          153 VFDPVTFLP---------------------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT  211 (426)
T ss_dssp             EECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             EEECCCCcE---------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence            776655543                     2211100  0   01234466788  78888876   3789999999999


Q ss_pred             EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE----eeccCCCe-EEEEEeCCCCEEEEEeCCCc
Q 006126          407 TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       407 ~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~----~~~~~~~v-~~l~~sp~~~~l~s~s~dg~  479 (660)
                      .+.++....    +....|++  .+++.+.||.+.+.+..+++....    +.....++ ..+.|.+++..++..+..+.
T Consensus       212 vv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~  287 (426)
T 3c75_H          212 FDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK  287 (426)
T ss_dssp             EEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE
T ss_pred             EEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc
Confidence            998887432    23445555  666677788888888766654422    21111221 23467999988888888999


Q ss_pred             EEEEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCCCceeee
Q 006126          480 LCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~  543 (660)
                      +.+.|+..........+..     +..+..+  .....++++|+++.+++. .          ++.|.++|+.+.+.+.+
T Consensus       288 V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~  365 (426)
T 3c75_H          288 IFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK  365 (426)
T ss_dssp             EEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             EEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE
Confidence            9999997643211111110     0000011  123347899999988774 2          35799999999999999


Q ss_pred             ecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEECCCCeeEEEe
Q 006126          544 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~-~l~sg~-~dg~I~iwd~~~~~~~~~~  588 (660)
                      +..   ......++|+|||+ ++++.. .++.|.++|+.+++.+..+
T Consensus       366 I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          366 IEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            865   34588999999999 888887 4899999999999999887

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=1.4e-10  Score=117.00  Aligned_cols=244  Identities=11%  Similarity=0.011  Sum_probs=163.4

Q ss_pred             CCCeEEEEEecCCCEEEE-------EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126          311 GGRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA  383 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s-------~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  383 (660)
                      -....+++|+++|..+++       ...++.|.+|+..+++..           .+...  .      ..++...+.+++
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~~~--~------~~~~~~~~~~i~   77 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VICKP--E------VNGYGGIPAGCQ   77 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEECC--E------ETTEECCEEEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEEec--c------cCCCCCCCceEE
Confidence            446789999999987777       566788988886655431           11100  0      002445688899


Q ss_pred             Ee-C-CEEEEEe-CCcEEEEECCCCeEEEE-EcC----CCCCeEEEEEcCCC-eEEEEeCC---------------CeEE
Q 006126          384 LR-G-SHLFSAS-GGKISIFSLETFQTLAT-FAN----PPPIATYFILLPQD-LFAFGFDD---------------SSIL  439 (660)
Q Consensus       384 ~s-~-~~l~s~~-dg~I~iwd~~~~~~~~~-~~~----~~~~v~~v~~sp~~-~l~s~~~d---------------~~I~  439 (660)
                      ++ . ..|..+. ++.|.+||.. ++.... ...    ....+.+++++++| .+++...+               +.|.
T Consensus        78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~  156 (314)
T 1pjx_A           78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY  156 (314)
T ss_dssp             ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred             EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence            98 5 6766666 6689999998 765433 221    12347899999999 66655544               5788


Q ss_pred             EEeCCCCceeeEeeccCCCeEEEEEe----CCCCEEEEE-eCCCcEEEEEcC-CCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126          440 VHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLVSS-GADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHI  513 (660)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~v~~l~~s----p~~~~l~s~-s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~  513 (660)
                      .||.. ++.... ..+......++|+    |+++.++.+ ..++.|.+||.. ++.......+. ...++..  ..+..+
T Consensus       157 ~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~--~~p~~i  231 (314)
T 1pjx_A          157 CFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHE--GGADGM  231 (314)
T ss_dssp             EECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSS--CEEEEE
T ss_pred             EECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-ECCCCCC--CCCCce
Confidence            88876 554333 2344557889999    999765554 567899999986 44322111222 1112110  246789


Q ss_pred             EEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCC
Q 006126          514 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTST  581 (660)
Q Consensus       514 ~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~  581 (660)
                      +++++|.++++. .++.|.+||..+++.+..+..  +...+.+++|+|+|+.|+.+ ..++.|..|++..
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999999888874 678999999987877666644  25779999999999965554 4568899999875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.37  E-value=1.8e-10  Score=128.71  Aligned_cols=295  Identities=10%  Similarity=0.026  Sum_probs=189.9

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS  401 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd  401 (660)
                      +..++.++.++.+.-+|..+++.            +|......................+++.+..++.++ |+.|..+|
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD  144 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD  144 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence            44577777788888888888774            665443221100000000001123344577777777 99999999


Q ss_pred             CCCCeEEEEEcCC-C----CCeEEEEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeeccCCC------------
Q 006126          402 LETFQTLATFANP-P----PIATYFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR------------  458 (660)
Q Consensus       402 ~~~~~~~~~~~~~-~----~~v~~v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~------------  458 (660)
                      ..+|+.+..+... .    ..+.+.-...++.+++++.      ++.|+.+|..+|+.+..+......            
T Consensus       145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~  224 (677)
T 1kb0_A          145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR  224 (677)
T ss_dssp             TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred             CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence            9999999888754 2    1121111112444555443      789999999999988776532211            


Q ss_pred             --------------------eEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeeceeeeee
Q 006126          459 --------------------ITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHSF  499 (660)
Q Consensus       459 --------------------v~~l~~sp~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~~~~  499 (660)
                                          ...++++|++..++.++.++                   .|..+|.++|+..-.....  
T Consensus       225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~--  302 (677)
T 1kb0_A          225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET--  302 (677)
T ss_dssp             HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS--
T ss_pred             ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC--
Confidence                                13578899988988887664                   4999999998765433221  


Q ss_pred             eeccC----CCCCCeEEEEEecCC---cEEEE-EecCcEEEEeCCCCceeeeecCCCC---------CCCe---------
Q 006126          500 QTGLV----PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---------DLPI---------  553 (660)
Q Consensus       500 ~~~~~----~~~~~v~~~~~sp~~---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~v---------  553 (660)
                        .|.    .......-+....+|   ..++. +.+|.++++|..+|+.+..+.....         ..++         
T Consensus       303 --~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~  380 (677)
T 1kb0_A          303 --PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS  380 (677)
T ss_dssp             --TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred             --CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence              110    000122333444577   55666 5889999999999998866543210         0111         


Q ss_pred             ---------------EEEEEccCCCEEEEEecC-------------------------------------------CeEE
Q 006126          554 ---------------TYATYSCDGKCIYVSCKS-------------------------------------------GHVK  575 (660)
Q Consensus       554 ---------------~~~~~s~dg~~l~sg~~d-------------------------------------------g~I~  575 (660)
                                     ..++|+|++.++++...+                                           |.|.
T Consensus       381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~  460 (677)
T 1kb0_A          381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL  460 (677)
T ss_dssp             SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred             CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence                           156889999988876542                                           7899


Q ss_pred             EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                      .||+.+++.+..+...         .+.+  ...+.. ++..++.++.||.+++||..+++..|....+.
T Consensus       461 A~D~~tG~~~W~~~~~---------~~~~--~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          461 AWDPVAQKAAWSVEHV---------SPWN--GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             EEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             EEeCCCCcEEeecCCC---------CCCc--CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence            9999999998887631         1222  334455 67788889999999999999999999876554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.37  E-value=2.4e-10  Score=128.05  Aligned_cols=293  Identities=12%  Similarity=0.043  Sum_probs=186.2

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC-CC-eEEEEEeCCEEEEEe-CCcEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DS-ISCFALRGSHLFSAS-GGKISI  399 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-v~~v~~s~~~l~s~~-dg~I~i  399 (660)
                      +..++.++.++.+.-+|..+++.            +|............  ... .. -..+.+.+..++.++ |+.|..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~v~v~~~dg~l~A  135 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRL------------IWKYDPQSDRHRAG--EACCDAVNRGVAVWKGKVYVGVLDGRLEA  135 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCce------------eEEEcCCCCccccc--cccccCCCCccEEECCEEEEEccCCEEEE
Confidence            55677777888899899888874            66543221110000  000 00 112334477788888 999999


Q ss_pred             EECCCCeEEEEEcCC--CCCeEEEEEcC---CCeEEEEe------CCCeEEEEeCCCCceeeEeeccC------------
Q 006126          400 FSLETFQTLATFANP--PPIATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ------------  456 (660)
Q Consensus       400 wd~~~~~~~~~~~~~--~~~v~~v~~sp---~~~l~s~~------~d~~I~iwd~~~~~~~~~~~~~~------------  456 (660)
                      +|..+|+.+..+...  ......+..+|   ++.+++++      .++.|+.||..+|+.+-.+....            
T Consensus       136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~  215 (689)
T 1yiq_A          136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM  215 (689)
T ss_dssp             EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred             EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence            999999998887642  11111111122   55444443      37899999999999887664210            


Q ss_pred             -------------------CCeEEEEEeCCCCEEEEEeCCCc-------------------EEEEEcCCCeeeeceeeee
Q 006126          457 -------------------NRITCLAYSLSLNVLVSSGADAQ-------------------LCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       457 -------------------~~v~~l~~sp~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~~~  498 (660)
                                         .....++++|++..++.++.++.                   |..||.++|+..-..... 
T Consensus       216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-  294 (689)
T 1yiq_A          216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-  294 (689)
T ss_dssp             HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-
T ss_pred             cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-
Confidence                               01125788998889999888764                   999999998765433221 


Q ss_pred             eeeccCC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCC----------------------
Q 006126          499 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------------------  548 (660)
Q Consensus       499 ~~~~~~~----~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------------------  548 (660)
                         .|..    ....+.......+|+   .++. ..+|.++++|.++|+.+.......                      
T Consensus       295 ---~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~  371 (689)
T 1yiq_A          295 ---PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA  371 (689)
T ss_dssp             ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred             ---CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence               1110    001222223334665   5666 488999999999999874332210                      


Q ss_pred             ----CC-----------CCeEEEEEccCCCEEEEEec-------------------------------------------
Q 006126          549 ----MD-----------LPITYATYSCDGKCIYVSCK-------------------------------------------  570 (660)
Q Consensus       549 ----~~-----------~~v~~~~~s~dg~~l~sg~~-------------------------------------------  570 (660)
                          ..           ..-..++|+|+..+++++..                                           
T Consensus       372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~  451 (689)
T 1yiq_A          372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK  451 (689)
T ss_dssp             TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred             ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence                00           01113788999888887632                                           


Q ss_pred             --CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          571 --SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       571 --dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                        +|.|+.||+.+|+.+..+...         .+..  .-.+.. .+.++++++.||.|+.||..+|+..|....+.
T Consensus       452 ~~~g~l~A~D~~tG~~~W~~~~~---------~~~~--~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~  516 (689)
T 1yiq_A          452 SWSGKLIAWDPVKQQAAWEVPYV---------TIFN--GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAAS  516 (689)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CcceeEEEEECCCCCeEeEccCC---------CCcc--CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence              377999999999999887642         1122  224444 57899999999999999999999999765553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.36  E-value=1.7e-09  Score=112.35  Aligned_cols=304  Identities=10%  Similarity=-0.021  Sum_probs=186.0

Q ss_pred             CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCC---C--CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          273 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS---F--GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~---h--~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++..++.++.++.+..+|..++   ...-...+....   +  ...+.+ ....++..++.++.++.+..+|..+++.  
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG---~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~--  125 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDG---KEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTV--  125 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTC---CEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCE--
T ss_pred             ECCEEEEEcCCCeEEEEEccCC---ceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCE--
Confidence            4677888888899999998742   222233332100   0  122322 2223456788888999999998887764  


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe-----EEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TYF  421 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v-----~~v  421 (660)
                                +|....+..           ........+..++.++ ++.|..+|..+|+.+..+.......     ...
T Consensus       126 ----------~W~~~~~~~-----------~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~  184 (376)
T 3q7m_A          126 ----------AWQTKVAGE-----------ALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP  184 (376)
T ss_dssp             ----------EEEEECSSC-----------CCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC
T ss_pred             ----------EEEEeCCCc-----------eEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc
Confidence                      454321110           0111123366777777 8999999999999888776432211     111


Q ss_pred             EEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCC-------eEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          422 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-------ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       422 ~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-------v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      ... ++.++.++.++.+..+|..+|+.+.........       +..+.-.|  .+..++.++.++.+..+|.++++...
T Consensus       185 ~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w  263 (376)
T 3q7m_A          185 TTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW  263 (376)
T ss_dssp             EEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred             EEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence            222 347778888999999999999887666432100       00010111  24677788889999999999976543


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                      ....           .....+...  +..+++ +.++.|..+|..+++.+....... ...+.....  .+..|+.++.+
T Consensus       264 ~~~~-----------~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~  327 (376)
T 3q7m_A          264 KREL-----------GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSE  327 (376)
T ss_dssp             EECC-----------CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTT
T ss_pred             eccC-----------CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCC
Confidence            2221           123344443  444554 678899999999999876654211 222222232  35788899999


Q ss_pred             CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          572 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       572 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      |.|+++|..+|+.+......        ...+.. ....   .+..|..++.||.|+.|+.
T Consensus       328 g~l~~~d~~tG~~~~~~~~~--------~~~~~~-~~~~---~~~~l~v~~~~G~l~~~~~  376 (376)
T 3q7m_A          328 GYLHWINVEDGRFVAQQKVD--------SSGFQT-EPVA---ADGKLLIQAKDGTVYSITR  376 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECC--------TTCBCS-CCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred             CeEEEEECCCCcEEEEEecC--------CCccee-CCEE---ECCEEEEEeCCCEEEEEeC
Confidence            99999999999988877642        111211 1111   2457888889999999873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.34  E-value=2.1e-10  Score=117.79  Aligned_cols=169  Identities=11%  Similarity=0.035  Sum_probs=128.5

Q ss_pred             CeEEEEEe--CCEEEEEeCCcEEEEECCCCe-----------EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeC
Q 006126          378 SISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP  443 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~-----------~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~  443 (660)
                      .++.++++  ..++++|+...+.+|++.+..           ..... .+.. |+.++|  |+ .|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            58889999  778888885577779875433           11222 3455 999999  77 88888 8899999999


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                      .+.........|...+.++.+.+..  +++++.||.|.+||+.++...   .+.          ..|++++|||+| ..+
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG-~~v  177 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ-LAV  177 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE-EEE
T ss_pred             hhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc-eEE
Confidence            8876666667788889888876643  888899999999999985432   111          479999999999 444


Q ss_pred             EEecCcEEEEeCCCCce--eeeecC----C---CCCCCeEEEEEccCCCEEEE
Q 006126          524 SIHEGQIDVYEAPTLNH--TSQLVP----D---KMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       524 ~~~d~~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~dg~~l~s  567 (660)
                      ...||.+++|+...+..  ..++..    .   .|...|.+++|.+++.++++
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            46999999999876664  455521    1   25788999999999999886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=6.6e-10  Score=111.36  Aligned_cols=226  Identities=12%  Similarity=0.067  Sum_probs=148.8

Q ss_pred             CCCeEEEEEecCCCEEEE-EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          311 GGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s-~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      ..-..+..|+|++..|+. ...++.|..|+..++..           ..+              .....+.+++++  ++
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~--------------~~~~~~~~i~~~~dG~   66 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRV--------------TMDAPVSSVALRQSGG   66 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEE--------------ECSSCEEEEEEBTTSS
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEE--------------eCCCceEEEEECCCCC
Confidence            345568899996655544 44578888887665432           111              134568899999  66


Q ss_pred             EEEEEeCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCC-eEEEEeC-----------CCeEEEEeCCCCceeeE
Q 006126          388 HLFSASGGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAK  451 (660)
Q Consensus       388 ~l~s~~dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~-~l~s~~~-----------d~~I~iwd~~~~~~~~~  451 (660)
                       |+.+.++.|.+||..+++.......    ....++.++++|+| ++++...           .+.|+.++.. ++.. .
T Consensus        67 -l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~  143 (297)
T 3g4e_A           67 -YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-K  143 (297)
T ss_dssp             -EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-E
T ss_pred             -EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-E
Confidence             5555677899999998876443322    12347889999999 4443322           2345555543 3333 2


Q ss_pred             eeccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126          452 LKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE  527 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d  527 (660)
                      +..+....+.++|+|+++.|+ +.+.++.|.+||+  .++.......+. ....+.   ..+..++++++|++.++. .+
T Consensus       144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~-~~~~~~---~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY-KLEKEE---QIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE-ECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred             EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE-ECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence            333445578999999998765 4555789999997  455432222222 111222   457889999999877775 56


Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEec
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK  570 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~  570 (660)
                      +.|.+||..+++.+..+...  ...+++++|+ |+++.|+.++.
T Consensus       220 ~~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TEEEEECTTTCCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence            78999999889988888653  5679999998 89887776654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.33  E-value=3e-10  Score=127.05  Aligned_cols=280  Identities=11%  Similarity=0.067  Sum_probs=184.1

Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC-ceeeecccCCCCCCeE-EEEEeCCEEEEEe------
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS------  393 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~------  393 (660)
                      ++..++.++.|+.+..+|..+++.            +|....+ ...       ....+. .....+..++.++      
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-------~~~~~~~~p~v~~~~v~v~~~~~~~~  187 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKE------------VWHQNTFEGQK-------GSLTITGAPRVFKGKVIIGNGGAEYG  187 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCE------------EEEEETTTTCC-------SSCBCCSCCEEETTEEEECCBCTTTC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCE------------EeeecCCcCcC-------cCcccccCcEEECCEEEEEecccccC
Confidence            456788888999999999988874            5654332 100       000111 1112255555544      


Q ss_pred             -CCcEEEEECCCCeEEEEEcCCCCC--------------------------------eEEEEEcCCC-eEEEEeCCC---
Q 006126          394 -GGKISIFSLETFQTLATFANPPPI--------------------------------ATYFILLPQD-LFAFGFDDS---  436 (660)
Q Consensus       394 -dg~I~iwd~~~~~~~~~~~~~~~~--------------------------------v~~v~~sp~~-~l~s~~~d~---  436 (660)
                       ++.|..||..+|+.+..+......                                ...++++|++ .++.++.++   
T Consensus       188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w  267 (677)
T 1kb0_A          188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPW  267 (677)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred             CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccc
Confidence             488999999999998887632211                                1246788888 777777654   


Q ss_pred             ----------------eEEEEeCCCCceeeEeec--cC-------CCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCCC
Q 006126          437 ----------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSL---NVLVSSGADAQLCVWDAVGW  488 (660)
Q Consensus       437 ----------------~I~iwd~~~~~~~~~~~~--~~-------~~v~~l~~sp~~---~~l~s~s~dg~i~vwd~~~~  488 (660)
                                      .|..+|..+|+.+..+..  |.       .....+....+|   ..++.++.+|.++++|.++|
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                            599999999998877654  21       112223334477   67889999999999999998


Q ss_pred             eeeeceeeeeee-----e--------------ccC----CC---CCCeEEEEEecCCcEEEE-Eec--------------
Q 006126          489 KKLCSKFLHSFQ-----T--------------GLV----PE---TTIVNHIQFHPDQIHLLS-IHE--------------  527 (660)
Q Consensus       489 ~~~~~~~~~~~~-----~--------------~~~----~~---~~~v~~~~~sp~~~~l~~-~~d--------------  527 (660)
                      +.+....+....     .              ++.    +.   ...-..++++|++..+++ ..+              
T Consensus       348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence            876443321000     0              000    00   000125789999888877 332              


Q ss_pred             -----------------------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          528 -----------------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       528 -----------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                                                   +.|..||+.+++.+-.+..   ..++....+..++..++.++.||.+++||
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                                         7799999999998877653   34455566777888999999999999999


Q ss_pred             CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE-EEEeC----------------CCeEEEEeCC
Q 006126          579 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLT----------------NGRVHVIEPL  633 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l-~s~s~----------------Dg~v~iw~~~  633 (660)
                      ..+|+.+..+...         ..+...-+.|.+ +|+.+ ++.+.                .+.+.+|.+.
T Consensus       505 ~~tG~~lw~~~~~---------~~~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          505 AATGEKLWEAPTG---------TGVVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             TTTCCEEEEEECS---------SCCCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             CCCCceeeeeeCC---------CCcccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            9999999988752         112233567777 67644 44322                3678888876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=2.2e-09  Score=107.47  Aligned_cols=221  Identities=12%  Similarity=0.013  Sum_probs=145.3

Q ss_pred             CeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          378 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      -..+..|+  ++.|+...  ++.|..||..+++.. .+. ....+.+++++++| ++++ . ++.|.+||..+++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            34567777  44444444  789999999887653 332 34678999999999 5444 3 568999999887654332


Q ss_pred             ec----cCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC
Q 006126          453 KG----HQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  519 (660)
Q Consensus       453 ~~----~~~~v~~l~~sp~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  519 (660)
                      ..    ....++.++++|+|+++++...+         ..-.+|.+......  ..   ...+ .   ...+.++|+|++
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~---~~~~-~---~~pngi~~spdg  160 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV--KK---YFDQ-V---DISNGLDWSLDH  160 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE--EE---EEEE-E---SBEEEEEECTTS
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE--EE---Eeec-c---ccccceEEcCCC
Confidence            21    12457899999999977654321         23445554432111  11   1111 1   356789999999


Q ss_pred             cEEEEE--ecCcEEEEeC--CCCcee--eeec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc
Q 006126          520 IHLLSI--HEGQIDVYEA--PTLNHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA  592 (660)
Q Consensus       520 ~~l~~~--~d~~i~iwd~--~~~~~~--~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~  592 (660)
                      +.++++  .++.|.+||+  .++...  ..+. ...+......++++++|++.++...++.|.+||..+++.+..+..+ 
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-  239 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-  239 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS-
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC-
Confidence            988764  5688999987  455432  1111 1112356788999999998888877889999999999988887642 


Q ss_pred             ccCCCCcCcccceEEEEEe-cCCCCEEEEEe
Q 006126          593 YAQPGTISLELYPLVIAAH-PLEPNRIALGL  622 (660)
Q Consensus       593 ~~~~gh~~~~v~~~~v~~s-p~d~~~l~s~s  622 (660)
                             .  ..+++++|. | +++.|..++
T Consensus       240 -------~--~~~t~~~f~g~-d~~~L~vt~  260 (297)
T 3g4e_A          240 -------V--DKTTSCCFGGK-NYSEMYVTC  260 (297)
T ss_dssp             -------S--SBEEEEEEESG-GGCEEEEEE
T ss_pred             -------C--CCceEEEEeCC-CCCEEEEEc
Confidence                   1  235599998 8 666554443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.30  E-value=9.7e-10  Score=115.27  Aligned_cols=246  Identities=9%  Similarity=-0.025  Sum_probs=160.1

Q ss_pred             CCeEEEEEe-CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC--eEEEEeCCCCceee
Q 006126          377 DSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKA  450 (660)
Q Consensus       377 ~~v~~v~~s-~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~--~I~iwd~~~~~~~~  450 (660)
                      .....++|+ ...|+.+.  ++.|++||..++........... .. ++|+|++ .++++..++  .|.+|+...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            457889998 44444444  68999999998877665554332 33 8999999 888887766  89999987665444


Q ss_pred             Ee----eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe--EEEEEecCCcEEEE
Q 006126          451 KL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV--NHIQFHPDQIHLLS  524 (660)
Q Consensus       451 ~~----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~  524 (660)
                      .+    ......+.+++++|++..|+++..++.|+.||..++.........  ..++.   ..-  ..++|+|++..|++
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--~~g~~---~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE--LSGSL---GTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC--CCSCC---CCSSCCEEEEETTTTEEEE
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc--ccCCC---CCCccccEEEeCCCCEEEE
Confidence            44    224466788999995555666777889999999875421100000  11111   112  38999996445544


Q ss_pred             -E-ecCcEEEEeCCCCceeeeecCCC-------------CCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEe
Q 006126          525 -I-HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       525 -~-~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~  588 (660)
                       . .++.|+.||.. +. +..+.+..             .-.....++++|+|+++++-. .++.|+.|++.+++.....
T Consensus       284 ~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          284 SDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             EETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             EeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence             3 67889999975 33 22332211             023478999999999777777 7899999998888754433


Q ss_pred             eccccc--CCCC--cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          589 NLTAYA--QPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       589 ~~~~~~--~~gh--~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      ......  ..|.  ...--.+..++++| ++.++++-..++.|+.+++
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence            210000  0000  00012356899999 7888888888899988765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.30  E-value=6.6e-10  Score=115.66  Aligned_cols=233  Identities=13%  Similarity=-0.037  Sum_probs=155.4

Q ss_pred             CCEEEEEe--C----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCeEEEEeCCCCce
Q 006126          386 GSHLFSAS--G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKT  448 (660)
Q Consensus       386 ~~~l~s~~--d----g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----------~d~~I~iwd~~~~~~  448 (660)
                      ++.+++..  +    +.|.++|..+++.+.++.....+  .++++||| .++++.          .++.|.++|..+++.
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            45555544  3    69999999999999998855555  79999999 666654          467899999999998


Q ss_pred             eeEeecc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeeceeeeee----eeccCCCCCCeEEEEE
Q 006126          449 KAKLKGH-------QNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSF----QTGLVPETTIVNHIQF  515 (660)
Q Consensus       449 ~~~~~~~-------~~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~  515 (660)
                      +..+.-.       ......+.|+|||++++++..  ++.|.+.|+.+++......+...    ..+      .-.-+.+
T Consensus       162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g------~~~~v~~  235 (426)
T 3c75_H          162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPAS------PTVFYMN  235 (426)
T ss_dssp             EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE------TTEEEEE
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCC------CcEEEEE
Confidence            8777521       133457889999999998874  57899999999776554433100    000      1112445


Q ss_pred             ecCCcEEEEE--------------------------------------ecCcEEEEeCCCCcee--eeecCC--C-----
Q 006126          516 HPDQIHLLSI--------------------------------------HEGQIDVYEAPTLNHT--SQLVPD--K-----  548 (660)
Q Consensus       516 sp~~~~l~~~--------------------------------------~d~~i~iwd~~~~~~~--~~~~~~--~-----  548 (660)
                      +++|+.+++.                                      ..+.|.+.|.......  ..+...  .     
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g  315 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD  315 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence            5555544432                                      2234445554322210  111000  0     


Q ss_pred             -CCCCeEEEEEccCCCEEEEEec----------CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-
Q 006126          549 -MDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-  616 (660)
Q Consensus       549 -~~~~v~~~~~s~dg~~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-  616 (660)
                       .......++++|+++.+++...          ++.|.++|+.+.+.+..+...         ..  ...++|+| |++ 
T Consensus       316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---------~~--P~gia~sp-Dg~~  383 (426)
T 3c75_H          316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---------HE--IDSINVSQ-DAEP  383 (426)
T ss_dssp             EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------EE--ECEEEECC-SSSC
T ss_pred             cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---------CC--cCeEEEcc-CCCE
Confidence             0011122689999998777643          357999999999999988742         12  33899999 788 


Q ss_pred             EEEEEe-CCCeEEEEeCCCCcee
Q 006126          617 RIALGL-TNGRVHVIEPLESEVE  638 (660)
Q Consensus       617 ~l~s~s-~Dg~v~iw~~~~~~~~  638 (660)
                      +++++. .++.|.|+|..+++..
T Consensus       384 ~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          384 LLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCEE
Confidence            888877 5899999999998874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.30  E-value=9e-10  Score=123.41  Aligned_cols=311  Identities=11%  Similarity=0.055  Sum_probs=190.2

Q ss_pred             CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCC-----CC-CCe-EEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~-----h~-~~V-~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +..+++++.++.|.-+|..++   ...-.+......     .. ..+ ..+++  ++..++.++.|+.+..+|..+++. 
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~-  143 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDG---RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR-  143 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTC---CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-
T ss_pred             CCEEEEEcCCCeEEEEECCCC---ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE-
Confidence            556666777778888887642   122222111100     00 001 11122  356788888999999999988875 


Q ss_pred             eeeeccceeEEEecCCCC-ceeeecccCCCCCCeE-EEEEeCCEEEEEe-------CCcEEEEECCCCeEEEEEcCCC--
Q 006126          347 LEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP--  415 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-------dg~I~iwd~~~~~~~~~~~~~~--  415 (660)
                                 +|..... ..       .....+. +..+.+..++.+.       +|.|..||..+|+.+..+....  
T Consensus       144 -----------~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  205 (689)
T 1yiq_A          144 -----------AWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD  205 (689)
T ss_dssp             -----------EEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred             -----------eeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC
Confidence                       5654322 00       0000111 1112244555543       4789999999999988775210  


Q ss_pred             -C----------------------------CeEEEEEcCCC-eEEEEeCCC-------------------eEEEEeCCCC
Q 006126          416 -P----------------------------IATYFILLPQD-LFAFGFDDS-------------------SILVHCPCTK  446 (660)
Q Consensus       416 -~----------------------------~v~~v~~sp~~-~l~s~~~d~-------------------~I~iwd~~~~  446 (660)
                       .                            ....++++|++ .++.++.++                   .|..+|.++|
T Consensus       206 p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG  285 (689)
T 1yiq_A          206 PKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG  285 (689)
T ss_dssp             TTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC
T ss_pred             cccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC
Confidence             0                            01257888887 888888776                   3999999999


Q ss_pred             ceeeEeec--cC-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeeeceeeeee--ee-----------
Q 006126          447 KTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF--QT-----------  501 (660)
Q Consensus       447 ~~~~~~~~--~~-------~~v~~l~~sp~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~-----------  501 (660)
                      +.+..+..  |.       ..+.......+|+   .++.++.+|.++++|.++|+.+....+...  ..           
T Consensus       286 ~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~  365 (689)
T 1yiq_A          286 EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPIL  365 (689)
T ss_dssp             CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEE
T ss_pred             ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCccc
Confidence            99877764  21       1122222333565   788899999999999999987633221100  00           


Q ss_pred             ---------ccC-----C---CCCCeEEEEEecCCcEEEEE-e-------------------------------------
Q 006126          502 ---------GLV-----P---ETTIVNHIQFHPDQIHLLSI-H-------------------------------------  526 (660)
Q Consensus       502 ---------~~~-----~---~~~~v~~~~~sp~~~~l~~~-~-------------------------------------  526 (660)
                               ...     +   ....-..++++|+...+++. .                                     
T Consensus       366 ~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~  445 (689)
T 1yiq_A          366 DEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEG  445 (689)
T ss_dssp             CHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHH
T ss_pred             chhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCccccc
Confidence                     000     0   00011237889988877763 2                                     


Q ss_pred             --------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCC
Q 006126          527 --------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT  598 (660)
Q Consensus       527 --------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh  598 (660)
                              +|.|+.||+.+++.+-.+..   ..++....+...+..+++|+.||.|+.||.++|+.+..+...       
T Consensus       446 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~-------  515 (689)
T 1yiq_A          446 LLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA-------  515 (689)
T ss_dssp             HHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-------
T ss_pred             CCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC-------
Confidence                    37799999999998877654   233344466678889999999999999999999999988742       


Q ss_pred             cCcccceEEEEEecCCCCE-EEEE
Q 006126          599 ISLELYPLVIAAHPLEPNR-IALG  621 (660)
Q Consensus       599 ~~~~v~~~~v~~sp~d~~~-l~s~  621 (660)
                        ..+...-+.|.. +|+. +++.
T Consensus       516 --~~~~~~p~ty~~-~G~qyv~~~  536 (689)
T 1yiq_A          516 --SGVMAAPVTYSV-DGEQYVTFM  536 (689)
T ss_dssp             --SCCCSCCEEEEE-TTEEEEEEE
T ss_pred             --CCcccCceEEEE-CCEEEEEEE
Confidence              112222467777 6764 4443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.28  E-value=1.2e-10  Score=119.47  Aligned_cols=188  Identities=12%  Similarity=-0.004  Sum_probs=135.4

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS  391 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s  391 (660)
                      .++..+++++....+++|+.++. .+|+.+............     +.   ....   .  .+.. |+.++|.+.+|++
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~-----~~---~~~~---~--~lp~-V~~l~fd~~~L~v  102 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTP-----LT---FKWE---K--EIPD-VIFVCFHGDQVLV  102 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCC-----CC---CSEE---E--ECTT-EEEEEEETTEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhcccccc-----cc---ceEE---e--eCCC-eeEEEECCCEEEE
Confidence            37899999999999999998854 459876443100000000     00   0011   1  2555 9999998888888


Q ss_pred             EeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          392 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       392 ~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      +.++.|++||+.+.........+...+.++.+.+. .+++++.||.|.+||+.++....    +...|+|++|+|+|  +
T Consensus       103 ~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~  175 (388)
T 1xip_A          103 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L  175 (388)
T ss_dssp             EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred             EcCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence            88999999999887666666677777888777655 48889999999999999887653    45689999999999  6


Q ss_pred             EEEeCCCcEEEEEcCCCeeeeceeee--eeee---ccCCCCCCeEEEEEecCCcEEEE
Q 006126          472 VSSGADAQLCVWDAVGWKKLCSKFLH--SFQT---GLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       472 ~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~---~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      +.|..||++++|+...++......+.  ....   +|.   ..|.++.|.+++.++++
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence            78999999999998876531111111  0011   244   68999999999999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.27  E-value=1.1e-09  Score=114.76  Aligned_cols=235  Identities=10%  Similarity=-0.023  Sum_probs=156.1

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      -...+.++|+|+|+.+++...++.|++|+..++..                     .....  . ..... ++|+  ++.
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---------------------~~~~~--~-~~~~~-ia~~~~g~~  184 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---------------------TTVHP--G-FKGGK-PAVTKDKQR  184 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---------------------EEEEE--T-CCBCB-CEECTTSSE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---------------------EEeec--c-CCCCc-eeEecCCCc
Confidence            35789999999999777766678898888765543                     11100  1 11222 7788  777


Q ss_pred             EEEEe-CC--cEEEEECCCCeEEEEE----cCCCCCeEEEEEcCC-CeEEEEeCCCeEEEEeCCCCceeeE----eeccC
Q 006126          389 LFSAS-GG--KISIFSLETFQTLATF----ANPPPIATYFILLPQ-DLFAFGFDDSSILVHCPCTKKTKAK----LKGHQ  456 (660)
Q Consensus       389 l~s~~-dg--~I~iwd~~~~~~~~~~----~~~~~~v~~v~~sp~-~~l~s~~~d~~I~iwd~~~~~~~~~----~~~~~  456 (660)
                      |+++. ++  .|.+|+...+.....+    ......+.+++++|+ +.|+.+..++.|+.||..++.....    ..++.
T Consensus       185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~  264 (409)
T 3hrp_A          185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL  264 (409)
T ss_dssp             EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred             EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence            88777 44  7999998766544444    224456788999995 4555577788999999987753322    22222


Q ss_pred             CCe--EEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC------C------CCCCeEEEEEecCCcE
Q 006126          457 NRI--TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV------P------ETTIVNHIQFHPDQIH  521 (660)
Q Consensus       457 ~~v--~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~------~~~~v~~~~~sp~~~~  521 (660)
                      ..-  ..++|+|+ +.++++-..++.|+.||.....       . ...++.      .      .-.....++++|+|.+
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-------~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l  336 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-------E-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF  336 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------E-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-------E-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence            222  38999995 5566666678899999987521       1 111110      0      0035788999999996


Q ss_pred             EEE-E-ecCcEEEEeCCCCceeeeecCCC-------------CCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          522 LLS-I-HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       522 l~~-~-~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      +++ . .++.|+.||+.++.. .++.+..             .-.....++++++|.++++-..++.|+.+++
T Consensus       337 yvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          337 YIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            666 5 678999999877764 3332210             0245889999999888888888889988775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=4.4e-10  Score=115.14  Aligned_cols=269  Identities=9%  Similarity=-0.033  Sum_probs=171.4

Q ss_pred             CCeEEEEEecCCCEEEEEEC--CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126          312 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH  388 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~  388 (660)
                      ..+..++++|+|+.+++...  ++.++||.+..+..           .-|-....      ...+|-..+..++++ ...
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----------~~~p~~~~------~~~~~~~~p~gv~~d~~g~   79 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----------IPFPPQSG------NAIITFDTVLGIKSDGNGI   79 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----------EESCCCCS------SCCCCCSCEEEEEECSSSE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----------ecCCCccc------CcccceeEeeEEEEcCCCc
Confidence            57899999999998888642  34366676653221           11110000      011466789999999 455


Q ss_pred             EEEEe-------CCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCC--eEEEEe---CCCeEEEEeCCCCceee
Q 006126          389 LFSAS-------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFAFGF---DDSSILVHCPCTKKTKA  450 (660)
Q Consensus       389 l~s~~-------dg~I~iwd~~~~~~~~~~~~~------~~~v~~v~~sp~~--~l~s~~---~d~~I~iwd~~~~~~~~  450 (660)
                      |..+.       ++.|.+||+.+++.++.+..+      ......+++++++  .+++..   .++.|.+||+.+++..+
T Consensus        80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A           80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            55544       368999999999987776532      2346789999865  455555   67899999999888777


Q ss_pred             EeeccCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec-
Q 006126          451 KLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-  527 (660)
Q Consensus       451 ~~~~~~~~v~-~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d-  527 (660)
                      .+.+|..... ...+.++|..+.+.+.++.+..|.                       ..+..++|+|+|+.|+++ .+ 
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSC
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCC
Confidence            6655432111 134555777777677777765442                       135679999999988884 33 


Q ss_pred             CcEEEEeCC---CCc-----eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126          528 GQIDVYEAP---TLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI  599 (660)
Q Consensus       528 ~~i~iwd~~---~~~-----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~  599 (660)
                      +.++.++..   .+.     ....+....+......++++++|.++++...++.|.+||..+++.......         
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~---------  287 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD---------  287 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC---------
Confidence            356555532   111     000111001133456799999999999998899999999966764433321         


Q ss_pred             CcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                      ....++.+++|.| ++.++++.+..+.+-+|
T Consensus       288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             GGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred             CceecCCeeEECC-CCcEEEEeCcccccccc
Confidence            1123456899999 78888887765555433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=6.5e-09  Score=105.54  Aligned_cols=216  Identities=12%  Similarity=0.051  Sum_probs=139.9

Q ss_pred             eEEEEEe--CCEE-EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee
Q 006126          379 ISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK  453 (660)
Q Consensus       379 v~~v~~s--~~~l-~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~  453 (660)
                      ..+..|+  ++.+ ++.. ++.|..||..+++... +. ....+.+++|+|+| ++++ +.+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEee
Confidence            3466777  3444 4444 7899999998876532 32 34578999999999 5554 444 59999998887543222


Q ss_pred             c----cCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          454 G----HQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       454 ~----~~~~v~~l~~sp~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                      .    ....++++.++|+|+++++...      .+.|..+|  +++..   .   +..+ .   .....++|+|+++.++
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~---~~~~-~---~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---K---LFAD-I---SIPNSICFSPDGTTGY  194 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---E---EEEE-E---SSEEEEEECTTSCEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---E---eeCC-C---cccCCeEEcCCCCEEE
Confidence            1    1245889999999997765442      24555555  43321   1   1111 1   3567899999999877


Q ss_pred             EE--ecCcEEEEeCC--CC-cee--eeec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126          524 SI--HEGQIDVYEAP--TL-NHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ  595 (660)
Q Consensus       524 ~~--~d~~i~iwd~~--~~-~~~--~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~  595 (660)
                      .+  .++.|.+||+.  ++ ...  ..+. ..........++++++|.+.++...++.|.+||. +++.+..+...    
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~----  269 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP----  269 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS----
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC----
Confidence            64  46789999986  55 321  1111 1112355678999999998877767789999998 56666666532    


Q ss_pred             CCCcCcccceEEEEEe-cCCCCEEEEEe
Q 006126          596 PGTISLELYPLVIAAH-PLEPNRIALGL  622 (660)
Q Consensus       596 ~gh~~~~v~~~~v~~s-p~d~~~l~s~s  622 (660)
                          ..  .+.+++|+ | ++..|..++
T Consensus       270 ----~~--~~~~~af~g~-d~~~L~vt~  290 (326)
T 2ghs_A          270 ----GK--QTTCPAFIGP-DASRLLVTS  290 (326)
T ss_dssp             ----CS--BEEEEEEEST-TSCEEEEEE
T ss_pred             ----CC--CcEEEEEecC-CCCEEEEEe
Confidence                22  24589998 7 666654444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=7e-09  Score=107.59  Aligned_cols=284  Identities=9%  Similarity=0.009  Sum_probs=175.5

Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEEEe-CCcEEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI  399 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-dg~I~i  399 (660)
                      ++..+++++.++.+..+|.++++.            +|....+......  ......+. .+...+..++.++ ++.|..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~------------~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~~g~l~a  117 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKE------------IWSVSLAEKDGWF--SKEPALLSGGVTVSGGHVYIGSEKAQVYA  117 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCE------------EEEEECCC---CC--SCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCce------------eeeecCccccccc--cccCcccccCceEeCCEEEEEcCCCEEEE
Confidence            356788888889999898877764            4543221100000  00022232 2333377777777 899999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-----EEEEEeCCCCEEEEE
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS  474 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~s~  474 (660)
                      +|..+|+.+................ ++.+++++.++.|..+|..+|+.+..+.......     ......  +..++++
T Consensus       118 ~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g  194 (376)
T 3q7m_A          118 LNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVG  194 (376)
T ss_dssp             EETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEEC
T ss_pred             EECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEE
Confidence            9999999887776443222122222 3478888899999999999999887765432111     122222  4567778


Q ss_pred             eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC---e-EEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCC
Q 006126          475 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD  550 (660)
Q Consensus       475 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~  550 (660)
                      +.++.+..+|..+++........ ...+... ...   + ..... .++..++.+.++.+..+|.++++.+.....    
T Consensus       195 ~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~-~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----  267 (376)
T 3q7m_A          195 GDNGRVSAVLMEQGQMIWQQRIS-QATGSTE-IDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKREL----  267 (376)
T ss_dssp             CTTTEEEEEETTTCCEEEEEECC-C------------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEECC----
T ss_pred             cCCCEEEEEECCCCcEEEEEecc-cCCCCcc-cccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeeccC----
Confidence            88999999999998765433322 0000000 000   1 01111 134444445789999999999998766532    


Q ss_pred             CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          551 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                      .....+..  ++..++.++.++.|+.+|..+|+.+......     +  .....  ....   .+..|..++.+|.|.++
T Consensus       268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----~--~~~~~--~~~~---~~~~l~v~~~~g~l~~~  333 (376)
T 3q7m_A          268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----L--HRLLT--SPVL---YNGNLVVGDSEGYLHWI  333 (376)
T ss_dssp             CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----T--TSCCC--CCEE---ETTEEEEECTTSEEEEE
T ss_pred             CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----C--CCccc--CCEE---ECCEEEEEeCCCeEEEE
Confidence            23444443  4678888889999999999999988776521     1  11111  1222   24578888899999999


Q ss_pred             eCCCCceeccCCC
Q 006126          631 EPLESEVEWGKLP  643 (660)
Q Consensus       631 ~~~~~~~~w~~~~  643 (660)
                      |..+++..|....
T Consensus       334 d~~tG~~~~~~~~  346 (376)
T 3q7m_A          334 NVEDGRFVAQQKV  346 (376)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEEEEEec
Confidence            9999999886544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.24  E-value=9.8e-09  Score=104.23  Aligned_cols=224  Identities=12%  Similarity=-0.044  Sum_probs=144.2

Q ss_pred             CeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEE
Q 006126          313 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF  390 (660)
Q Consensus       313 ~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~  390 (660)
                      -..+.+|+|++..++ +...++.|..|+..++..           ..|.              ....+.+++++ +..++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------------~~~~v~~i~~~~dg~l~  104 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------------LPFMGSALAKISDSKQL  104 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------------CSSCEEEEEEEETTEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEE--------------CCCcceEEEEeCCCeEE
Confidence            346788999865544 444577888777655432           1111              23468899998 44444


Q ss_pred             EEeCCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCC-eEEEEeC------CCeEEEEeCCCCceeeEeeccCCCe
Q 006126          391 SASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       391 s~~dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~~sp~~-~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                      .+.+..|.+||..+++........    ...+.+++++|+| .+++...      .+.|..++  +++.. .+..+....
T Consensus       105 v~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~  181 (326)
T 2ghs_A          105 IASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIP  181 (326)
T ss_dssp             EEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSE
T ss_pred             EEECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCccc
Confidence            455555999999888764433211    2357899999999 5444332      24666666  45433 333334467


Q ss_pred             EEEEEeCCCCEEEEE-eCCCcEEEEEcC--CC-eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 006126          460 TCLAYSLSLNVLVSS-GADAQLCVWDAV--GW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE  534 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~-s~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd  534 (660)
                      ..++|+|+++.++.+ +.++.|.+||+.  ++ .......+. ......   ..+..++++++|.+.++. .++.|.+||
T Consensus       182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSS---SEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-ECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            899999999877555 457899999986  54 321111111 111112   356789999999877775 568899999


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEecC
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS  571 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~d  571 (660)
                      . +++.+..+...  ...+++++|+ ++++.|++++..
T Consensus       258 ~-~g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          258 T-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             T-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             C-CCCEEEEEECC--CCCcEEEEEecCCCCEEEEEecC
Confidence            8 67777776542  4569999998 898877665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.23  E-value=9.4e-10  Score=123.95  Aligned_cols=240  Identities=12%  Similarity=0.067  Sum_probs=153.5

Q ss_pred             CCCCeEEEEEecCCCEEEEEEC-C----CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQ-T----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~-d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      |...+..++|||||++||.+.. .    ..|++||+.+++.                     +...+   +......++|
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---------------------~~~~~---~~~k~~~~~W  182 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---------------------LETPL---KDVKFSGISW  182 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---------------------EEEEE---EEEESCCCEE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---------------------Ccccc---CCceeccEEE
Confidence            5668899999999999886543 2    3566776665543                     22111   0001234567


Q ss_pred             e-CCEEEEEe-CC-------------cEEEEECCCCeE--EEEEc--C-CCCCeEEEEEcCCC-eE-EEEeC---CCeEE
Q 006126          385 R-GSHLFSAS-GG-------------KISIFSLETFQT--LATFA--N-PPPIATYFILLPQD-LF-AFGFD---DSSIL  439 (660)
Q Consensus       385 s-~~~l~s~~-dg-------------~I~iwd~~~~~~--~~~~~--~-~~~~v~~v~~sp~~-~l-~s~~~---d~~I~  439 (660)
                      + ++.|+.+. +.             .|++|++.++..  ...+.  . +...+..+.|+||| .| ++.+.   ++.|+
T Consensus       183 sDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          183 LGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY  262 (693)
T ss_dssp             ETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred             eCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence            6 77777776 53             499999987642  23333  2 34557789999999 55 44332   25899


Q ss_pred             EEeCCCCc-eeeEeeccCCCeEEEEEeCCCCEEEEEeC-C---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126          440 VHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGA-D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ  514 (660)
Q Consensus       440 iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  514 (660)
                      ++|+.++. ....+..+....... |+++|..|+..+. +   +.|..+|+.++...   ... ....|.   ..+.  .
T Consensus       263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---~~~-~l~~~~---~~~~--~  332 (693)
T 3iuj_A          263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---HWR-DLIPER---QQVL--T  332 (693)
T ss_dssp             EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCE-EEECCC---SSCE--E
T ss_pred             EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---ccE-EEecCC---CCEE--E
Confidence            99998764 455566666666555 6677766655543 3   57999999875421   112 122333   2343  8


Q ss_pred             EecCCcEEEE-E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC----CeEEEEECCCCeeE
Q 006126          515 FHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLELR  585 (660)
Q Consensus       515 ~sp~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----g~I~iwd~~~~~~~  585 (660)
                      |+++++.|+. . .++  .|++||+. +.....+... ....+..+.++++++.++....+    +.|+.||+.+++..
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            9999998887 4 443  69999986 4444555432 24567778888898877766555    89999999888644

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.22  E-value=3.3e-09  Score=106.68  Aligned_cols=229  Identities=8%  Similarity=-0.013  Sum_probs=149.8

Q ss_pred             CCCCeEEEEEecCCCEE-EEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ........+|+|+|+.| ++...++.|..|+.. +..           ..+.             .+...+..++++  |
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-----------~~~~-------------~~~~~~~gl~~d~dG   97 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-----------DVLL-------------DATAFTNGNAVDAQQ   97 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-----------EEEE-------------ESCSCEEEEEECTTS
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-----------EEEe-------------CCCCccceeeECCCC
Confidence            34567889999999954 455557888888653 221           1111             244567889998  5


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCC-eEEE----EeC-------------CCeEEEEeC
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAF----GFD-------------DSSILVHCP  443 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~-~l~s----~~~-------------d~~I~iwd~  443 (660)
                      +++++.. ++.|.+|+.. ++.......    ....+..+++.|+| ..++    |..             .+.|+.||.
T Consensus        98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A           98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence            5444444 5789999986 554332211    12346689999999 6665    332             356888888


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP  517 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  517 (660)
                      .+++.....  .....+.++|+||++.|+.+...      +.|.+||+..+.......+.   ....   +....+++++
T Consensus       177 ~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~---~~~~---~~pdgi~~d~  248 (305)
T 3dr2_A          177 DGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA---SVPD---GLPDGFCVDR  248 (305)
T ss_dssp             SSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE---CCSS---SCCCSEEECT
T ss_pred             CCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE---ECCC---CCCCeEEECC
Confidence            777654433  34567889999999988777665      78999998764411111111   1111   3456789999


Q ss_pred             CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          518 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       518 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      +|++.++. .+.|.+||. +++.+..+...   ..+.+++|+++++.|+.++.++ ++.++
T Consensus       249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            99955544 445999998 67777777653   2588999999999888887754 44443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.19  E-value=1.3e-09  Score=122.85  Aligned_cols=238  Identities=15%  Similarity=0.135  Sum_probs=152.0

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe--C----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC--------
Q 006126          374 DPKDSISCFALR--GSHLFSAS--G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--------  436 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~--d----g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~--------  436 (660)
                      +|...+..++|+  |++|+.+.  .    ..|++||+.+++.+.... +......++|+ || .|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            455678889999  88887544  2    379999999998655311 11112467899 99 787777663        


Q ss_pred             -----eEEEEeCCCCce--eeEe--ec-cCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          437 -----SILVHCPCTKKT--KAKL--KG-HQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       437 -----~I~iwd~~~~~~--~~~~--~~-~~~~v~~l~~sp~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                           .|++|++.++..  ...+  .. |...+..+.|+|||++|+....    +..|+++|+.++..    .+. ....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----~~~-~l~~  278 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----PLL-TVQG  278 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----CCE-EEEC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----ceE-EEeC
Confidence                 499999987643  2223  33 4456788999999998865443    24899999987531    112 1122


Q ss_pred             cCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCC---
Q 006126          503 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---  572 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---  572 (660)
                      +.   ...... ++++|..|+. +.    .+.|..+|+.++..  ...+..+  ...+.  .|++++++|+....++   
T Consensus       279 ~~---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          279 DL---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             SS---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEE
T ss_pred             CC---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCee
Confidence            22   233344 6777777665 42    25799999987654  2344442  33343  8899999888766543   


Q ss_pred             eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC----CeEEEEeCCCCce
Q 006126          573 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV  637 (660)
Q Consensus       573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D----g~v~iw~~~~~~~  637 (660)
                      .|++|++..+. ...+...     +  .  .++..+.++| ++..++....+    ++|+.||+.+++.
T Consensus       351 ~l~~~d~~g~~-~~~l~~p-----~--~--~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          351 RVEQFDYEGKR-VREVALP-----G--L--GSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEECTTSCE-EEEECCS-----S--S--SEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEEECCCCe-eEEeecC-----C--C--ceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            68999988554 3333321     1  1  1233677888 55554444333    8999999988764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=1e-08  Score=103.06  Aligned_cols=225  Identities=12%  Similarity=-0.014  Sum_probs=146.8

Q ss_pred             CCCCeEEEEEe--CCE-EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126          375 PKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK  449 (660)
Q Consensus       375 h~~~v~~v~~s--~~~-l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~  449 (660)
                      .........|+  ++. +++.. ++.|..|+. +++ ...+..+...+..++++++| ++++...++.|.+|+.. ++..
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~  119 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH  119 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence            44556788888  664 45544 789999998 454 34555566778899999999 66665566899999986 5533


Q ss_pred             eEee---c-cCCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126          450 AKLK---G-HQNRITCLAYSLSLNVLVS----SGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT  508 (660)
Q Consensus       450 ~~~~---~-~~~~v~~l~~sp~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  508 (660)
                      ....   + ....++.++++|+|++.++    |..             .+.|..||..+++...      +. + .   .
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~------~~-~-~---~  188 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR------MA-D-L---D  188 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE------EE-E-E---S
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE------Ee-c-C---C
Confidence            2221   1 1234678999999998886    332             2467778876654221      11 1 1   3


Q ss_pred             CeEEEEEecCCcEEEEE-ec------CcEEEEeCCCCcee--eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          509 IVNHIQFHPDQIHLLSI-HE------GQIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       509 ~v~~~~~sp~~~~l~~~-~d------~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      ....++|+||++.|+++ ..      +.|++||+..+...  ..+... .......++++++|++.++. .+ .|.+|+.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~  265 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS  265 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-SS-EEEEECT
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CC-cEEEECC
Confidence            56789999999988774 33      68999998654311  112111 13445678999999955444 44 4999998


Q ss_pred             CCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126          580 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV  629 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i  629 (660)
                       .++.+..+...        . .  +.+++|+| +++.|..++.++..++
T Consensus       266 -~g~~~~~~~~~--------~-~--~~~~~f~~-d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          266 -DGQLLGHIPTP--------G-T--ASNCTFDQ-AQQRLFITGGPCLWML  302 (305)
T ss_dssp             -TSCEEEEEECS--------S-C--CCEEEECT-TSCEEEEEETTEEEEE
T ss_pred             -CCCEEEEEECC--------C-c--eeEEEEeC-CCCEEEEEcCCeEEEE
Confidence             46666666532        2 2  34899998 7888887777654443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.15  E-value=1.9e-09  Score=109.35  Aligned_cols=293  Identities=11%  Similarity=0.051  Sum_probs=182.6

Q ss_pred             EEEEEeCCCcEEEEeccCcCCCccee-eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126          276 SAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       276 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      .+..++.++.+..|| .+    +... ...+    +...+.++...++|. +..++.+  +..+|. +++.         
T Consensus        32 ~l~v~t~~~~l~~~d-~~----g~~~~~~~~----~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~---------   89 (330)
T 3hxj_A           32 TIYLGSSNKNLYAIN-TD----GSVKWFFKS----GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE---------   89 (330)
T ss_dssp             CEECSSTTTTTEEEC-TT----SCEEESSCG----GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG---------
T ss_pred             eEEEEcCCCEEEEEC-CC----CcEEEEEec----CCCcccceEEecCCc-EEEecCc--EEEECC-CCcE---------
Confidence            456677788888888 53    3322 2111    233456677767776 4444444  655553 2221         


Q ss_pred             eEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEe
Q 006126          355 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGF  433 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~  433 (660)
                         +|....           .........+.+..+..++ ++.|..+|.. ++...........+.++...+++.+..++
T Consensus        90 ---~~~~~~-----------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt  154 (330)
T 3hxj_A           90 ---KWRFDT-----------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS  154 (330)
T ss_dssp             ---GGGSCC----------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred             ---EEEEEC-----------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc
Confidence               122111           1111122223366777777 8999999998 87777766555556677777777677788


Q ss_pred             CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126          434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI  513 (660)
Q Consensus       434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  513 (660)
                      .++.|..+|.. ++....+......+.++...+++...+ ++  +.|..+| .+++.....     . ...   ..+.++
T Consensus       155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~-----~-~~~---~~~~~~  220 (330)
T 3hxj_A          155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF-----Y-AGY---WTVTRP  220 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE-----C-CSS---CCCSCC
T ss_pred             CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE-----c-cCC---cceece
Confidence            88999999998 887777765566677777877887554 44  8899999 665432211     1 111   357788


Q ss_pred             EEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc
Q 006126          514 QFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY  593 (660)
Q Consensus       514 ~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~  593 (660)
                      ...++|...+.+.++.|..+|. +++.+..+...  ...+..+.+.+++ .|..++.+|.|+.+|. +++....+...  
T Consensus       221 ~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~--  293 (330)
T 3hxj_A          221 AISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG--  293 (330)
T ss_dssp             EECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS--
T ss_pred             EECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC--
Confidence            8899887777777888999985 66666555432  3333445565555 5667778889999996 67776665431  


Q ss_pred             cCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          594 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       594 ~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                            ...+.  ++...+ ++. |..++.+|.+++......+
T Consensus       294 ------~~~~~--~~~~d~-~g~-l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          294 ------SWIIA--TPVIDE-NGT-IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             ------SCCCS--CCEECT-TCC-EEEECTTSCEEEEEC----
T ss_pred             ------Ccccc--ceEEcC-CCE-EEEEcCCCeEEEEeccccc
Confidence                  22233  555656 555 5567899999998776543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.15  E-value=1.8e-12  Score=134.35  Aligned_cols=227  Identities=15%  Similarity=0.042  Sum_probs=131.8

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC-CeE-E
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT-C  461 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-~v~-~  461 (660)
                      ++.+++++ ||.|..||..+|+.+..+..  ..+.+..+..++ .+++++.|+.|+.||..+|+.+..+..+.. .+. +
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            67888888 89999999999999988876  445455556677 788888999999999999988766653321 110 0


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH  540 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~  540 (660)
                      ..+. ++..+++++.|+.++.||.++|+........          .   ...++|++..+++ +.++.|+.||.++|+.
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~----------~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA----------F---ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC----------C---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            0111 3456778888999999999997654322111          1   2345567777777 5889999999999987


Q ss_pred             eeeecCCCCCCCeEEEEEccCC---CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126          541 TSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR  617 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg---~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~  617 (660)
                      +..+....    ....+++++.   ..+++++.||.|+.||..+|+.+.....         ..++. ....+++ ++..
T Consensus       153 ~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---------~~pv~-~~~~~~~-dg~~  217 (369)
T 2hz6_A          153 RWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---------ASPVV-AFYVWQR-EGLR  217 (369)
T ss_dssp             CCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---------SSCEE-EEEECTT-SSCE
T ss_pred             EEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---------CCceE-EEEEecC-CceE
Confidence            66653211    1222333332   5677888999999999999998887763         22222 1344455 5543


Q ss_pred             EEE--EeCCCeEEEEeCCCCc----eeccCCC
Q 006126          618 IAL--GLTNGRVHVIEPLESE----VEWGKLP  643 (660)
Q Consensus       618 l~s--~s~Dg~v~iw~~~~~~----~~w~~~~  643 (660)
                      .+.  ...++.++.+|..+|+    .+|....
T Consensus       218 ~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~  249 (369)
T 2hz6_A          218 KVMHINVAVETLRYLTFMSGEVGRITKWKYPF  249 (369)
T ss_dssp             EECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred             eccceeecccceeeeehhcCCcccceeeeecc
Confidence            211  1125567888888888    7887654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=3.1e-09  Score=108.83  Aligned_cols=275  Identities=10%  Similarity=0.029  Sum_probs=165.9

Q ss_pred             ceeeEecCCCCEEEEEe--CCCcEEEEeccCcCCCcceeeee---cCCCCCCCCeEEEEEecCCCEEEEEEC-----CCc
Q 006126          265 SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQ-----TAT  334 (660)
Q Consensus       265 ~~~~~~spdg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~---l~~~~h~~~V~~~~~spdg~~l~s~s~-----dg~  334 (660)
                      ...+.++|+|+.+++..  .++.++||.+.+    +.+..+.   ....+|...+..++++++|+.+++-..     ++.
T Consensus        19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~----g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQ----DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             EEEEEECTTSCEEEEECGGGCCSCSEEEEET----TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             cceEEECCCCCEEEEeCCCCCCceEEEEECC----CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            33458999999988864  234466776652    3333210   011235678999999999986555433     467


Q ss_pred             EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-----eCCcEEEEECCCCeE
Q 006126          335 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-----SGGKISIFSLETFQT  407 (660)
Q Consensus       335 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-----~dg~I~iwd~~~~~~  407 (660)
                      |.+||..+++..          ..+......       ..+...+..++++  +..++.+     .++.|.+||+.+++.
T Consensus        95 i~~~d~~tg~~~----------~~~~~~~~~-------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           95 LVAWDTLNNQLS----------RVIYLPPPI-------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             EEEEETTTTEEE----------EEEECCTTT-------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             EEEEECCCCeEE----------EEEECChhh-------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            888887665431          122211000       0233456788888  4454443     246899999999988


Q ss_pred             EEEEcCCCCCeE-EEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-cEEEEE
Q 006126          408 LATFANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWD  484 (660)
Q Consensus       408 ~~~~~~~~~~v~-~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~vwd  484 (660)
                      .+.+..|..... ...+.++| .+.+.+.++.++.|.              ..+..++|+|+|+.|+++..++ .+..++
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            777755422110 13455577 677777777776553              2367899999999988887766 454444


Q ss_pred             cC---CCeeeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126          485 AV---GWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS  559 (660)
Q Consensus       485 ~~---~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  559 (660)
                      ..   .+..........+ ..++.   +....++++++|.++++. .++.|.+||..+++....... .+...+.+++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~  299 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFG  299 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEEC
T ss_pred             HHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEEC
Confidence            32   1100000000000 11222   345679999999888874 778999999866654333322 124568899999


Q ss_pred             cCCCEEEEEecCCeEEEEE
Q 006126          560 CDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       560 ~dg~~l~sg~~dg~I~iwd  578 (660)
                      ++|.++++.+..+.+.+|.
T Consensus       300 ~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          300 SDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             TTSCEEEEECCGGGSGGGB
T ss_pred             CCCcEEEEeCccccccccc
Confidence            9998888876555554443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.15  E-value=1.6e-09  Score=110.83  Aligned_cols=259  Identities=8%  Similarity=-0.036  Sum_probs=162.3

Q ss_pred             cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCcEEEEeccCCceeeeeeccce
Q 006126          285 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       285 ~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s----------~dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      +|.+.|..+   ......+...    ..+  .++|+|||++++.+.          .++.|.+||..+.+.         
T Consensus        47 ~vsvID~~t---~~v~~~i~vG----~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---------  108 (368)
T 1mda_H           47 ENWVSCAGC---GVTLGHSLGA----FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---------  108 (368)
T ss_dssp             EEEEEETTT---TEEEEEEEEC----TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------
T ss_pred             eEEEEECCC---CeEEEEEeCC----CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---------
Confidence            788999875   2333333221    234  799999999888886          256787777666654         


Q ss_pred             eEEEecCCCCceeeecccCCC-----CCCeEEEEEe--CCEEEEEe---CCcEEE--EECCCCeEEEEEcCCCCCeEEEE
Q 006126          355 ESQLYQPSSKLVMTNDIAADP-----KDSISCFALR--GSHLFSAS---GGKISI--FSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~s--~~~l~s~~---dg~I~i--wd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                                  +......+.     ......++++  |++++++.   +..|.+  +|+.+   +..+.....    +.
T Consensus       109 ------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~  169 (368)
T 1mda_H          109 ------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FH  169 (368)
T ss_dssp             ------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CC
T ss_pred             ------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eE
Confidence                        222110000     1234467888  77888776   256888  99877   444432111    22


Q ss_pred             EcCCC--eEEEEeCCCeEEEEeCCC-----Cceee----EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-
Q 006126          423 LLPQD--LFAFGFDDSSILVHCPCT-----KKTKA----KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-  490 (660)
Q Consensus       423 ~sp~~--~l~s~~~d~~I~iwd~~~-----~~~~~----~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-  490 (660)
                      +.|++  .+++.+.|+.+.+.|+.+     ++...    .+.....+.   . .+++..++..+. +.+.+.|..+... 
T Consensus       170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~  244 (368)
T 1mda_H          170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT  244 (368)
T ss_dssp             CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE
T ss_pred             EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce
Confidence            34565  556667788888888876     44331    111122333   3 667777777777 9999999975321 


Q ss_pred             -eeceeeee---eeeccCCCCCCeEEEEEecCCcEEEEE-e-c--------CcEEEEeCCCCceeeeecCCCCCCCeEEE
Q 006126          491 -LCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSI-H-E--------GQIDVYEAPTLNHTSQLVPDKMDLPITYA  556 (660)
Q Consensus       491 -~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  556 (660)
                       .....+..   ...+..+  .....++++||++.++++ . .        +.+.++|+.+++.+.++..   ......+
T Consensus       245 v~~~~~~~~~~~~~~~~~p--~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p~gi  319 (368)
T 1mda_H          245 MKAAIDGNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---GHDSDAI  319 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---EEEECEE
T ss_pred             EEEEEEecccccccccccc--CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---CCCcceE
Confidence             11111100   0000000  122237899999988874 3 2        3677999999999988865   3368899


Q ss_pred             EEccCCCE-EEEEe-cCCeEEEEECCCCeeEEEeec
Q 006126          557 TYSCDGKC-IYVSC-KSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       557 ~~s~dg~~-l~sg~-~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      +|+|||+. +++.. .++.|.++|+.+++.+..+..
T Consensus       320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            99999984 55555 489999999999999988864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.14  E-value=2.3e-09  Score=109.75  Aligned_cols=225  Identities=9%  Similarity=-0.091  Sum_probs=145.1

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCeEEEEeCCCCceeeEeecc-------CC
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------QN  457 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----------~d~~I~iwd~~~~~~~~~~~~~-------~~  457 (660)
                      .|.++|..+++.+.++.....+  .+.++||+ .++++.          .++.|.+||+.+++.+.++...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999999855555  79999999 776665          3679999999999999888643       12


Q ss_pred             CeEEEEEeCCCCEEEEEeC--CCcEEE--EEcCCCeeeeceeee----eeeeccCC-----CCCCeEEEE----------
Q 006126          458 RITCLAYSLSLNVLVSSGA--DAQLCV--WDAVGWKKLCSKFLH----SFQTGLVP-----ETTIVNHIQ----------  514 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s~--dg~i~v--wd~~~~~~~~~~~~~----~~~~~~~~-----~~~~v~~~~----------  514 (660)
                      ....+.++|||++++++..  +..+.+  +|..+   .....+.    ....+...     ..+.+..+.          
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            4567899999999998875  457888  88866   1111110    00000000     000000010          


Q ss_pred             ----------------EecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCC-----C---CCCeEEEEEccCCCEEEE
Q 006126          515 ----------------FHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDK-----M---DLPITYATYSCDGKCIYV  567 (660)
Q Consensus       515 ----------------~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~-----~---~~~v~~~~~s~dg~~l~s  567 (660)
                                      .++++..++. +. +.|.+.|+.+..  .+..+....     +   ......++|+||++.++.
T Consensus       202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                            0333333333 44 677777875432  222221100     0   111112689999998887


Q ss_pred             Eec-C--------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEe-CCCeEEEEeCCCCc
Q 006126          568 SCK-S--------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESE  636 (660)
Q Consensus       568 g~~-d--------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s-~Dg~v~iw~~~~~~  636 (660)
                      +.. +        +.+.++|+.+++.+..+...         .  ...+++|+| |++ .+++.. .+++|.++|+.+++
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---------~--~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---------H--DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---------E--EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECC---------C--CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence            643 2        35669999999998887642         1  234899999 776 567776 59999999999988


Q ss_pred             ee
Q 006126          637 VE  638 (660)
Q Consensus       637 ~~  638 (660)
                      ..
T Consensus       349 vv  350 (368)
T 1mda_H          349 DQ  350 (368)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=2.6e-11  Score=125.53  Aligned_cols=186  Identities=15%  Similarity=0.073  Sum_probs=107.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  507 (660)
                      .+++++.|+.|+.||..+|+.+..+..  +.+.+..+.+++..+++++.|+.|+.||..+|+........ .......  
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~~~~--   85 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQA--   85 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHHHTT--
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Ccccccc--
Confidence            889999999999999999999988875  45555556667878888889999999999887643222211 0000000  


Q ss_pred             CCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE
Q 006126          508 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC  586 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~  586 (660)
                      .+    .+..+ ..+++ +.++.|+.||.++|+.+..+...  .    ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus        86 sp----~~~~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           86 SP----CRSSD-GILYMGKKQDIWYVIDLLTGEKQQTLSSA--F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             CS----CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             Cc----eEecC-CEEEEEeCCCEEEEEECCCCcEEEEecCC--C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            11    11123 34555 68899999999999987776442  1    23456788999999999999999999999887


Q ss_pred             EeecccccCCCCcCcccceEEEEEecCCC---CEEEEEeCCCeEEEEeCCCCceeccCC
Q 006126          587 QINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGKL  642 (660)
Q Consensus       587 ~~~~~~~~~~gh~~~~v~~~~v~~sp~d~---~~l~s~s~Dg~v~iw~~~~~~~~w~~~  642 (660)
                      .+....          ..  ..++.+ +.   ..+++++.||.|+.||..+|+..|...
T Consensus       155 ~~~~~~----------~~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          155 NATYFD----------YA--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEEEE----------EC--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             eEeccc----------cc--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            765321          01  122222 21   456778899999999999999999754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=4.6e-08  Score=100.54  Aligned_cols=228  Identities=16%  Similarity=0.170  Sum_probs=145.1

Q ss_pred             CCEEEEEe--CCcEEEEECCCC----eEEEEEc-------CCCCCeEEEEEcCCCeEEEEeCC------CeEEEEeCCCC
Q 006126          386 GSHLFSAS--GGKISIFSLETF----QTLATFA-------NPPPIATYFILLPQDLFAFGFDD------SSILVHCPCTK  446 (660)
Q Consensus       386 ~~~l~s~~--dg~I~iwd~~~~----~~~~~~~-------~~~~~v~~v~~sp~~~l~s~~~d------~~I~iwd~~~~  446 (660)
                      +++|+..+  ++.|.++|+.+.    +..+++.       .....-..+...|+|.++++..+      +.|.++|..++
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCC
Confidence            56777776  789999999765    6666663       11123356788899933344333      78999999999


Q ss_pred             ceeeEeeccC---CCeEEEEEeCCCCEEEEEe-------------------CCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126          447 KTKAKLKGHQ---NRITCLAYSLSLNVLVSSG-------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       447 ~~~~~~~~~~---~~v~~l~~sp~~~~l~s~s-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  504 (660)
                      +.+.++....   ..-..+.|+|+++.+++..                   .+.+|.+||+.+++....     +..+..
T Consensus       175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-----I~vg~~  249 (462)
T 2ece_A          175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-----LTLGEE  249 (462)
T ss_dssp             CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE-----EESCTT
T ss_pred             eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE-----EecCCC
Confidence            9999886322   2234578899999888874                   368999999998644332     222211


Q ss_pred             CCCCCeEEEEE--ecCCcEEEE-E------ecCcEEEEeCCCCce--eeee--cCC---C-----------CCCCeEEEE
Q 006126          505 PETTIVNHIQF--HPDQIHLLS-I------HEGQIDVYEAPTLNH--TSQL--VPD---K-----------MDLPITYAT  557 (660)
Q Consensus       505 ~~~~~v~~~~~--sp~~~~l~~-~------~d~~i~iwd~~~~~~--~~~~--~~~---~-----------~~~~v~~~~  557 (660)
                      .  .....+.|  +|+++++++ +      .+++|.+|....+..  .+.+  ...   .           .......+.
T Consensus       250 g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          250 N--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             E--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             C--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            0  23445656  999999887 3      346787766544321  1111  000   0           024567899


Q ss_pred             EccCCCEEEEEec-CCeEEEEECCC---CeeEEEeeccccc-----CCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          558 YSCDGKCIYVSCK-SGHVKVFDTST---LELRCQINLTAYA-----QPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       558 ~s~dg~~l~sg~~-dg~I~iwd~~~---~~~~~~~~~~~~~-----~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      +|+||++|+++.. .+.|.+||+..   .+++..+......     +.|. ........+.++| ||++|.++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence            9999999998877 58999999863   3555555432000     0000 0001234799999 899988887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.08  E-value=1.1e-08  Score=108.75  Aligned_cols=239  Identities=10%  Similarity=0.054  Sum_probs=161.5

Q ss_pred             EEEEEe-----CCEEEEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEEEEE-c-CCC-eEEEEe---------------
Q 006126          380 SCFALR-----GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFIL-L-PQD-LFAFGF---------------  433 (660)
Q Consensus       380 ~~v~~s-----~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~-s-p~~-~l~s~~---------------  433 (660)
                      ..+.+.     |+++..+.  ++.|.+.|+.+.++.+.+.-. ......+++ + |++ ++++++               
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            455553     67777776  578999999999998866532 345778887 5 899 777774               


Q ss_pred             ---CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC--------------------------------
Q 006126          434 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--------------------------------  478 (660)
Q Consensus       434 ---~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg--------------------------------  478 (660)
                         .++.+.+.|..+.+...++.--. ....++++|+|+++++.+.+.                                
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence               34579999999988887776322 456778999999999888553                                


Q ss_pred             ------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc-----------
Q 006126          479 ------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN-----------  539 (660)
Q Consensus       479 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~-----------  539 (660)
                            .|.+.|.++.+.  ...+..+..+     ....++.++|||++++++  .+++|.++|+.+.+           
T Consensus       249 k~~~i~~V~VID~~~~~~--~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEAS--SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             CSEEETTEEEEECSGGGC--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             CeeEECcEEEEeCcccCC--ceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence                  366666665110  0102223333     246689999999999985  67899999998653           


Q ss_pred             -eeeeecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCC----------CeeEEEeecccccCCCCcCcccceEE
Q 006126          540 -HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       540 -~~~~~~~~~~~~~v~~~~~s~dg~~l~-sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                       .+.....   ......++|+|+| +++ +..-|+.|.+||+.+          .+.+..+..+-  ..||...   ..+
T Consensus       322 ~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y--qpGh~~~---~~g  392 (595)
T 1fwx_A          322 AVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY--QPGHLKT---VMG  392 (595)
T ss_dssp             GEEECCBC---CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS--CEEEEEE---TTT
T ss_pred             ceEEEcCC---CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc--cccccee---ccc
Confidence             2333322   5668899999999 555 455689999999987          45566665421  1132111   113


Q ss_pred             EEEecCCCCEEEEEeC---CCe----------EEEEeCCCCc
Q 006126          608 IAAHPLEPNRIALGLT---NGR----------VHVIEPLESE  636 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~---Dg~----------v~iw~~~~~~  636 (660)
                      ...+| ||++|+++..   |+.          -.++|+..++
T Consensus       393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            45678 8999988763   432          1788986555

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.05  E-value=9.5e-08  Score=106.63  Aligned_cols=291  Identities=12%  Similarity=0.068  Sum_probs=181.3

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC-CC-eEEEEEeCCEEEEEe-CCcEEE
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DS-ISCFALRGSHLFSAS-GGKISI  399 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-v~~v~~s~~~l~s~~-dg~I~i  399 (660)
                      +..++.++.++.+.-+|..+++.            +|............  ... .. -..+++.+..++.++ |+.|..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~dg~l~a  131 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKE------------LWRYDPEVAKVKAR--TSCCDAVNRGVALWGDKVYVGTLDGRLIA  131 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEEBTEEEEECTTSEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChh------------ceEECCCCCccccc--cccccCCccceEEECCEEEEEcCCCEEEE
Confidence            45577777788888888887774            66543322110000  000 00 112334466777777 999999


Q ss_pred             EECCCCeEEEEEcCCC----CCeEE-EEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeeccC------------
Q 006126          400 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ------------  456 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~----~~v~~-v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~------------  456 (660)
                      +|..+|+.+..+....    ..+.+ ..+ .++.++++..      ++.|+.+|..+|+.+..+....            
T Consensus       132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~  210 (668)
T 1kv9_A          132 LDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL  210 (668)
T ss_dssp             EETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred             EECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence            9999999988876421    11111 111 1444555443      5899999999999987764210            


Q ss_pred             -------------------CCeEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeeceeeee
Q 006126          457 -------------------NRITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS  498 (660)
Q Consensus       457 -------------------~~v~~l~~sp~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~~~  498 (660)
                                         .....++++|++..++.++.++                   .|..+|.++|+..-..... 
T Consensus       211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-  289 (668)
T 1kv9_A          211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-  289 (668)
T ss_dssp             HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred             ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-
Confidence                               0112467888888888888776                   3999999998765433221 


Q ss_pred             eeeccCC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCC----------CCCC--------
Q 006126          499 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------MDLP--------  552 (660)
Q Consensus       499 ~~~~~~~----~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~--------  552 (660)
                         .|..    .........+..+|+   .++. +.+|.++++|..+|+.+.......          ...+        
T Consensus       290 ---~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~  366 (668)
T 1kv9_A          290 ---PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY  366 (668)
T ss_dssp             ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred             ---CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence               1110    001222333344675   4555 588999999999999874432211          0000        


Q ss_pred             ----------------eEEEEEccCCCEEEEEe------------------------------------cCCeEEEEECC
Q 006126          553 ----------------ITYATYSCDGKCIYVSC------------------------------------KSGHVKVFDTS  580 (660)
Q Consensus       553 ----------------v~~~~~s~dg~~l~sg~------------------------------------~dg~I~iwd~~  580 (660)
                                      -..++++|+...++...                                    .+|.|+.||+.
T Consensus       367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~  446 (668)
T 1kv9_A          367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV  446 (668)
T ss_dssp             SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred             cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence                            01267888877766521                                    23789999999


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      +|+.+......         ....  ...... .+.+++.++.||.|+.||..+++..|....+
T Consensus       447 tG~~~W~~~~~---------~~~~--~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          447 KQKAAWKVPYP---------THWN--GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             TTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCcEEEEccCC---------CCCc--CceeEe-CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            99998887642         1122  222333 5778888999999999999999999977655

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.96  E-value=4.1e-07  Score=101.51  Aligned_cols=247  Identities=14%  Similarity=0.122  Sum_probs=158.9

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-------CC
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-------GG  395 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-------dg  395 (660)
                      +..++.++.|+.+..+|..+++.            +|............  ....+    ...+..++.+.       +|
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~~~~--~~~~P----~v~~~~v~vg~~~~~~~~~g  178 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKA------------IWSQQTTDPAKPYS--ITGAP----RVVKGKVIIGNGGAEYGVRG  178 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCE------------EEEEECSCTTSSCB--CCSCC----EEETTEEEECCBCTTTCCBC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE------------eeeeccCCCCCcce--ecCCC----EEECCEEEEeCCCCCcCCCC
Confidence            45688888899999999888875            56543221000000  01111    12345555553       37


Q ss_pred             cEEEEECCCCeEEEEEcCC---CC----------------------------CeEEEEEcCCC-eEEEEeCCC-------
Q 006126          396 KISIFSLETFQTLATFANP---PP----------------------------IATYFILLPQD-LFAFGFDDS-------  436 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~---~~----------------------------~v~~v~~sp~~-~l~s~~~d~-------  436 (660)
                      .|..+|..+|+.+..+...   ..                            ....+++.|++ .++.++.++       
T Consensus       179 ~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~  258 (668)
T 1kv9_A          179 FVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREV  258 (668)
T ss_dssp             EEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             EEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCC
Confidence            8999999999999887521   10                            01246788877 788877665       


Q ss_pred             ------------eEEEEeCCCCceeeEeec--cC-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeee
Q 006126          437 ------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       437 ------------~I~iwd~~~~~~~~~~~~--~~-------~~v~~l~~sp~~~---~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                                  .|..+|..+|+.+-.+..  |.       .+.....+..+|+   .++.++.+|.++++|..+|+.+.
T Consensus       259 ~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          259 RSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence                        499999999999877764  22       2233333334665   68889999999999999988763


Q ss_pred             ceeeee-----eeeccC-------------------CC---CCCeEEEEEecCCcEEEE-E-------------------
Q 006126          493 SKFLHS-----FQTGLV-------------------PE---TTIVNHIQFHPDQIHLLS-I-------------------  525 (660)
Q Consensus       493 ~~~~~~-----~~~~~~-------------------~~---~~~v~~~~~sp~~~~l~~-~-------------------  525 (660)
                      ......     -.....                   +.   ...-..++++|+...+++ .                   
T Consensus       339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~  418 (668)
T 1kv9_A          339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA  418 (668)
T ss_dssp             EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred             cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence            222110     000000                   00   000113678887766654 1                   


Q ss_pred             -----------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126          526 -----------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       526 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~  588 (660)
                                       .++.|..||+.+++.+-....   ..+.....+...+.++++|+.||.|+.||..+|+.+..+
T Consensus       419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence                             237799999999998766643   233334455567889999999999999999999999988


Q ss_pred             ec
Q 006126          589 NL  590 (660)
Q Consensus       589 ~~  590 (660)
                      ..
T Consensus       496 ~~  497 (668)
T 1kv9_A          496 EA  497 (668)
T ss_dssp             EC
T ss_pred             cC
Confidence            75

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.96  E-value=4.2e-07  Score=99.33  Aligned_cols=293  Identities=11%  Similarity=0.049  Sum_probs=176.2

Q ss_pred             CCEEEEEEC-CCcEEEEec-cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEE
Q 006126          323 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISI  399 (660)
Q Consensus       323 g~~l~s~s~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~i  399 (660)
                      +..++.++. ++.+.-+|. .+++.            +|...............-......+++.+..++.++ |+.+..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~a  129 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLA  129 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccE------------EEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEE
Confidence            445666666 788888887 67764            565432211000000000000112334567777777 899999


Q ss_pred             EECCCCeEEEEEcCCC----CCeEE-EEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeeccCCC----------
Q 006126          400 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR----------  458 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~----~~v~~-v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~----------  458 (660)
                      +|..+|+.+.......    ..+.+ ... .++.+++++.      ++.|+.+|..+|+.+.++......          
T Consensus       130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~  208 (571)
T 2ad6_A          130 LDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN  208 (571)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             EECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence            9999999988765322    01211 111 1455555554      789999999999988766532110          


Q ss_pred             ---------------------------e-EEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCeeeece
Q 006126          459 ---------------------------I-TCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       459 ---------------------------v-~~l~~sp~~~~l~s~s~d----------------g~i~vwd~~~~~~~~~~  494 (660)
                                                 + ..+++.++...++.++.+                +.|..+|.++|+..-..
T Consensus       209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~  288 (571)
T 2ad6_A          209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY  288 (571)
T ss_dssp             TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence                                       0 135677766677666532                25999999998765433


Q ss_pred             eeeeeeeccCC----CCCCeEEEEEecCCc---EEEEE-ecCcEEEEeCCCCceeeeecCCCC-----------CCCe--
Q 006126          495 FLHSFQTGLVP----ETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-----------DLPI--  553 (660)
Q Consensus       495 ~~~~~~~~~~~----~~~~v~~~~~sp~~~---~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~v--  553 (660)
                      ...    .|..    ......-+...++|+   .++.+ .+|.++++|..+|+.+..+.....           ..++  
T Consensus       289 ~~~----~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~  364 (571)
T 2ad6_A          289 QKT----PHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRD  364 (571)
T ss_dssp             ESS----TTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEEC
T ss_pred             cCC----CCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecc
Confidence            221    1100    001111223335775   44444 788999999999998766543210           0111  


Q ss_pred             ------------------------EEEEEccCCCEEEEEec-------------------------------------CC
Q 006126          554 ------------------------TYATYSCDGKCIYVSCK-------------------------------------SG  572 (660)
Q Consensus       554 ------------------------~~~~~s~dg~~l~sg~~-------------------------------------dg  572 (660)
                                              ..++++|+...+++...                                     +|
T Consensus       365 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g  444 (571)
T 2ad6_A          365 PEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMG  444 (571)
T ss_dssp             GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCE
T ss_pred             cccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCC
Confidence                                    24678888888877643                                     47


Q ss_pred             eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          573 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      .|+.||+.+++.+..+...         ....  ...... .+..+..++.||.|+.||..+++..|....+
T Consensus       445 ~l~a~D~~tG~~~W~~~~~---------~~~~--~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          445 QIRAFDLTTGKAKWTKWEK---------FAAW--GGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEECTTTCCEEEEEEES---------SCCC--SBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEEEEECCCCCEEEEecCC---------CCcc--ceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            8999999999998887642         1111  111122 4567777899999999999999999976554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.96  E-value=1.9e-06  Score=84.34  Aligned_cols=199  Identities=11%  Similarity=-0.009  Sum_probs=129.7

Q ss_pred             CeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE
Q 006126          378 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK  451 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~  451 (660)
                      .+..++|+  ++.|+.+.  .+.|..+++..+.....+.........+++++++  .+++....+.|.++++........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            36688888  56666666  6899999997665443343333567899999975  555555677999999874332222


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H  526 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~  526 (660)
                      ..........++++|++..|..+..   .+.|..+++.....   ..   +.....   .....++++|++..|+.+  .
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~---~~~~~~---~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RI---LAQDNL---GLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EE---EECTTC---SCEEEEEEETTTTEEEEEETT
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EE---EEECCC---CCCcEEEEcCCCCEEEEEECC
Confidence            2222256789999997666655554   36888888765211   11   111111   357889999988777764  5


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeec
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      .+.|.++|.........+..   ......++..  +..|+.+. .++.|.++|..+++.+..+..
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             CCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            67899999965443333322   3344567654  45555554 468999999999998888753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.95  E-value=2.4e-07  Score=89.59  Aligned_cols=217  Identities=13%  Similarity=-0.004  Sum_probs=142.7

Q ss_pred             CeEEEEEcCCC-CCeEEEEEcCCC-eEEEEeC--CCeEEEEeCCCCceeeEeeccC-CCeEEEEEeCCCCEEEEE-eCCC
Q 006126          405 FQTLATFANPP-PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSS-GADA  478 (660)
Q Consensus       405 ~~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~~--d~~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~-s~dg  478 (660)
                      .+.+.++.... .....+.|++++ .+++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  +..|..+ -.++
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            34555664322 235789999989 5555443  6799999999999988875322 222345554  4455544 4578


Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeE
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPIT  554 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~  554 (660)
                      .+.++|..+.+.+..     +..+ .+   .  ...+++||+.++++ .++.|.++|..+.+.+..+......   ..+.
T Consensus        87 ~v~viD~~t~~v~~~-----i~~g-~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKN-----FTHQ-MK---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             EEEEEETTTTEEEEE-----EECC-SS---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEEECCCCcEEEE-----EECC-CC---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            999999999655433     2222 11   1  23366788877775 5689999999999988888754221   2467


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC----CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126          555 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI  630 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~----~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw  630 (660)
                      .+.|. +|...+....++.|.+.|..+++.+..+......+    .++ ........++|+|+...+++++...++|.+.
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            78887 77544444457899999999999999987531110    011 1112245999999433466777788999999


Q ss_pred             eCCCCc
Q 006126          631 EPLESE  636 (660)
Q Consensus       631 ~~~~~~  636 (660)
                      ++...+
T Consensus       234 ~l~~~~  239 (266)
T 2iwa_A          234 KLHLVR  239 (266)
T ss_dssp             EEEECC
T ss_pred             EEeccc
Confidence            987653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.95  E-value=1.1e-05  Score=92.31  Aligned_cols=328  Identities=8%  Similarity=-0.012  Sum_probs=199.5

Q ss_pred             cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCC----CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126          271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~----~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      .++|. +..|+.++-+..||..+    ..+..+....    .-....|.++...++|... .|+.+ -+.+|+..+... 
T Consensus       223 d~~g~-lwigt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~-  294 (795)
T 4a2l_A          223 QSPTR-IWVATEGAGLFLINPKT----KEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSF-  294 (795)
T ss_dssp             EETTE-EEEEEBSSCEEEEETTT----TEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEE-
T ss_pred             cCCCC-EEEEECCCCeEEEeCCC----CeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeE-
Confidence            34454 44455554588888763    4454443210    1124679999999999854 45555 577777655433 


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc------CCCCCe
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA------NPPPIA  418 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~------~~~~~v  418 (660)
                                ..+........     .-....|.++... ...|..|+ ++-|..|+..++.......      -....|
T Consensus       295 ----------~~~~~~~~~~~-----~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V  359 (795)
T 4a2l_A          295 ----------ASYSSNPVENG-----SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVV  359 (795)
T ss_dssp             ----------EEECCCTTSTT-----SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSE
T ss_pred             ----------EEEecCCCCCC-----CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCee
Confidence                      11111100000     0134568999888 55566666 6889999876554322111      123568


Q ss_pred             EEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec--------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 006126          419 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK  490 (660)
Q Consensus       419 ~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~--------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~  490 (660)
                      .++...++|.|..|+.++-|..||..+++.......        ....|.++...++|+.|..|+.++-|..||..+++.
T Consensus       360 ~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          360 SCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             EEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred             EEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence            999988888677788888899999887654432211        235789999888888566788878899999988543


Q ss_pred             eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC----CCCCCCeEEEEEccCCCEEE
Q 006126          491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP----DKMDLPITYATYSCDGKCIY  566 (660)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~  566 (660)
                      .......  .....   ..|.++...++|...+.+. +.+.+||..+++.......    ......|.++..+++|.+.+
T Consensus       440 ~~~~~~~--~~l~~---~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          440 ENFNQRN--SQLVN---ENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             EEECTTT--SCCSC---SCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred             EEeecCC--CCcCC---CeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence            2111000  00111   4789999999888776655 6699999877654322211    11246789999999998776


Q ss_pred             EEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          567 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       567 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ...  +-|..||..+++.  .+.... ...+-...  .+.++...+ +|.+.++.. . .|..|+..+++-
T Consensus       514 gt~--~Gl~~~~~~~~~~--~~~~~~-~~~~l~~~--~i~~i~~d~-~g~lWigT~-~-Gl~~~d~~~~~~  574 (795)
T 4a2l_A          514 GGE--EGLSVFKQEGLDI--QKASIL-PVSNVTKL--FTNCIYEAS-NGIIWVGTR-E-GFYCFNEKDKQI  574 (795)
T ss_dssp             EES--SCEEEEEEETTEE--EECCCS-CSCGGGGS--CEEEEEECT-TSCEEEEES-S-CEEEEETTTTEE
T ss_pred             EeC--CceEEEeCCCCeE--EEecCC-CCCCCCCC--eeEEEEECC-CCCEEEEeC-C-CceeECCCCCcE
Confidence            554  4588999887765  222100 00011122  244888878 677665543 3 588899876643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.94  E-value=2.3e-05  Score=89.54  Aligned_cols=325  Identities=9%  Similarity=0.003  Sum_probs=202.0

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC----CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCc
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK  344 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~----~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~  344 (660)
                      ...++|. |..|+.+ -+.+||..+    ..+..+...    ..-....|.++...++|. |..|+.++-+..|+.....
T Consensus       269 ~~d~~g~-lWigt~~-Gl~~~~~~~----~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~  341 (795)
T 4a2l_A          269 AMDSQNR-LWIGTFN-DLNIYHEGT----DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR  341 (795)
T ss_dssp             EECTTSC-EEEEESS-CEEEEETTT----TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred             EEcCCCC-EEEEeCC-hhheEcCCC----CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence            3445555 4444455 588888763    445443211    011346799999999998 5667777778778765443


Q ss_pred             eeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcC--------C
Q 006126          345 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN--------P  414 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~--------~  414 (660)
                      .           ..+.....   ...   -....|.++... ...|..|+ ++-|..|+..+++.......        .
T Consensus       342 ~-----------~~~~~~~~---~~~---l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          342 F-----------KNIRNIPY---KNS---LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG  404 (795)
T ss_dssp             S-----------EEECCCTT---SSS---CSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred             c-----------eEEcCCCC---CCC---CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence            2           11111110   000   134568898888 55566667 67899999887765443211        2


Q ss_pred             CCCeEEEEEcCCCe-EEEEeCCCeEEEEeCCCCceeeEee----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126          415 PPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK  489 (660)
Q Consensus       415 ~~~v~~v~~sp~~~-l~s~~~d~~I~iwd~~~~~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~  489 (660)
                      ...|.++...++|. |..|+.++-|.+||..+++......    .....|.++...++|.+.+. +. +.+.+||..+++
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCe
Confidence            35688998888885 9999998889999998876443221    13467899998888876654 44 568899988754


Q ss_pred             eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-----CCCCCCeEEEEEccCCCE
Q 006126          490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-----DKMDLPITYATYSCDGKC  564 (660)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~dg~~  564 (660)
                      ........ ...+..  ...|.++...++|...+.+. +.+..||..+++.  .+..     ......|.++..+++|.+
T Consensus       483 ~~~~~~~~-~~~~~~--~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~l  556 (795)
T 4a2l_A          483 FTTIEKEK-DGTPVV--SKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGII  556 (795)
T ss_dssp             EEECCBCT-TCCBCC--CCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred             EEEccccc-cccccC--CceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence            32111000 000101  14689999999998777665 6799999876654  2221     012457899999999986


Q ss_pred             EEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          565 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       565 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      .++.. . -|..||..+++... +....    |-....++  ++...+ +|.+.+++  ++.|..|++.+++.
T Consensus       557 WigT~-~-Gl~~~d~~~~~~~~-~~~~~----gl~~~~i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~~  617 (795)
T 4a2l_A          557 WVGTR-E-GFYCFNEKDKQIKR-YNTTN----GLPNNVVY--GILEDS-FGRLWLST--NRGISCFNPETEKF  617 (795)
T ss_dssp             EEEES-S-CEEEEETTTTEEEE-ECGGG----TCSCSCEE--EEEECT-TSCEEEEE--TTEEEEEETTTTEE
T ss_pred             EEEeC-C-CceeECCCCCcEEE-eCCCC----CCchhheE--EEEECC-CCCEEEEc--CCceEEEcCCCCcE
Confidence            66543 3 58889988775433 32211    21123344  788777 67776665  35578888877654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.93  E-value=5.3e-07  Score=98.53  Aligned_cols=245  Identities=11%  Similarity=0.067  Sum_probs=152.7

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEEEe-------C
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------G  394 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-------d  394 (660)
                      +..++.++.|+.+..+|..+++.            +|....+....     ++  .+. .....+..++.++       +
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-----~~--~~~~~P~v~~g~v~vg~~~~~~~~~  175 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPKV-----GS--TLTQAPFVAKDTVLMGCSGAELGVR  175 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGG-----TC--BCCSCCEEETTEEEEECBCGGGTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCCc-----cc--eeccCCEEECCEEEEEecCCccCCC
Confidence            55678888899999999888874            56532221000     00  111 1112344555544       5


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCC-------------------------------------e-EEEEEcCCC-eEEEEeCC
Q 006126          395 GKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFDD  435 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~~sp~~-~l~s~~~d  435 (660)
                      +.|..+|..+|+.+..+......                                     + ..+++.++. .++.++.+
T Consensus       176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~  255 (571)
T 2ad6_A          176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN  255 (571)
T ss_dssp             CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred             CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence            79999999999998877532211                                     0 135666765 66555532


Q ss_pred             ----------------CeEEEEeCCCCceeeEeecc--C--------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcC
Q 006126          436 ----------------SSILVHCPCTKKTKAKLKGH--Q--------NRITCLAYSLSLN---VLVSSGADAQLCVWDAV  486 (660)
Q Consensus       436 ----------------~~I~iwd~~~~~~~~~~~~~--~--------~~v~~l~~sp~~~---~l~s~s~dg~i~vwd~~  486 (660)
                                      +.|..+|..+|+.+-.++..  .        .++ -+...++|+   .++.++.+|.+.++|..
T Consensus       256 ~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~  334 (571)
T 2ad6_A          256 PAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             CccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECC
Confidence                            36999999999988776532  1        111 122234674   57778899999999999


Q ss_pred             CCeeeeceeeee-e--eec---cC---------------------CC---CCCeEEEEEecCCcEEEEE-e---------
Q 006126          487 GWKKLCSKFLHS-F--QTG---LV---------------------PE---TTIVNHIQFHPDQIHLLSI-H---------  526 (660)
Q Consensus       487 ~~~~~~~~~~~~-~--~~~---~~---------------------~~---~~~v~~~~~sp~~~~l~~~-~---------  526 (660)
                      +|+.+....+.. .  ..+   ..                     +.   ...-..++++|+...+++. .         
T Consensus       335 tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~  414 (571)
T 2ad6_A          335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccc
Confidence            987654433220 0  000   00                     00   0001346788887777662 2         


Q ss_pred             ----------------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          527 ----------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       527 ----------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                                                  ++.|..||+.+++.+-++...   ..+....+...+..++.++.||.|+.||
T Consensus       415 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             ccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence                                        368999999999987776532   2233333344567888899999999999


Q ss_pred             CCCCeeEEEeec
Q 006126          579 TSTLELRCQINL  590 (660)
Q Consensus       579 ~~~~~~~~~~~~  590 (660)
                      ..+|+.+..+..
T Consensus       492 ~~tG~~lw~~~~  503 (571)
T 2ad6_A          492 NKDGKELWNFKM  503 (571)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             CCCCCEEEEEeC
Confidence            999999998875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.93  E-value=2e-08  Score=101.81  Aligned_cols=266  Identities=12%  Similarity=0.070  Sum_probs=166.7

Q ss_pred             EEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCC
Q 006126          317 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG  395 (660)
Q Consensus       317 ~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg  395 (660)
                      ..+..+|. +..++.++.+..|| .+++.            +|....           +...+.++... +..+..++++
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~------------~~~~~~-----------~~~~~~~~~~~~~g~l~v~t~~   79 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSV------------KWFFKS-----------GEIIECRPSIGKDGTIYFGSDK   79 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCE------------EESSCG-----------GGEEEECCEETTTTEECCSSCE
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcE------------EEEEec-----------CCCcccceEEecCCcEEEecCc
Confidence            34445665 56666778887787 55543            343221           11224455555 5666666655


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                       |..+|. +++....+...........+. ++.+..++.++.|..+|.. ++.......+...+.++...+++. +..++
T Consensus        80 -l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt  154 (330)
T 3hxj_A           80 -VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS  154 (330)
T ss_dssp             -EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred             -EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc
Confidence             888886 565544433222222233333 4477888889999999988 777766665555667777777776 55577


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY  555 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  555 (660)
                      .++.|..+|.. ++.......      ..   ..+.++...+++...+.+  +.|..+| .+++....+..  ....+.+
T Consensus       155 ~~~~l~~~d~~-g~~~~~~~~------~~---~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~--~~~~~~~  219 (330)
T 3hxj_A          155 NDNYLYAINPD-GTEKWRFKT------ND---AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYA--GYWTVTR  219 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEEC------SS---CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECC--SSCCCSC
T ss_pred             CCCEEEEECCC-CCEeEEEec------CC---CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEcc--CCcceec
Confidence            88999999998 543322211      11   356677787888765555  8999999 67777666543  2456778


Q ss_pred             EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      +..+++|. |..++.++.|..+|. +++....+...        .....  .+...+ ++ .|..++.+|.|..+|. ++
T Consensus       220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--------~~~~~--~~~~~~-~g-~l~v~t~~ggl~~~d~-~g  284 (330)
T 3hxj_A          220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--------KRIES--SPVIGN-TD-TIYFGSYDGHLYAINP-DG  284 (330)
T ss_dssp             CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT-TS-CEEEECTTCEEEEECT-TS
T ss_pred             eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--------CCccc--cceEcC-CC-eEEEecCCCCEEEECC-CC
Confidence            88888875 455667788888874 56656555421        11112  344444 44 5667778889999996 67


Q ss_pred             ceeccCC
Q 006126          636 EVEWGKL  642 (660)
Q Consensus       636 ~~~w~~~  642 (660)
                      +..|...
T Consensus       285 ~~~~~~~  291 (330)
T 3hxj_A          285 TEKWNFE  291 (330)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            7777644

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.93  E-value=1.1e-07  Score=90.84  Aligned_cols=201  Identities=12%  Similarity=0.033  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCC-CeEEEEEcCCC-eEEEEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe-CCCcE
Q 006126          406 QTLATFANPPP-IATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQL  480 (660)
Q Consensus       406 ~~~~~~~~~~~-~v~~v~~sp~~-~l~s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i  480 (660)
                      +.++++..... ....+.|+ ++ ++.+.+.+|  .|+++|+.+++.+..+.... ........+++..|.... .++.+
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence            34555632222 23678888 67 666777666  89999999999988876433 333333333455555554 58899


Q ss_pred             EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEEE
Q 006126          481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA  556 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~~  556 (660)
                      .+||..+.+.+......     ..       ...+++|+..|+.+ .++.|.++|..+.+.+.++......   ..++.+
T Consensus       110 ~v~D~~t~~~~~ti~~~-----~e-------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL  177 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYD-----GE-------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL  177 (262)
T ss_dssp             EEEETTTCCEEEEEECS-----SC-------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred             EEEECccCcEEEEEECC-----CC-------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence            99999997655443332     11       13344677777775 4678999999999998887663222   334557


Q ss_pred             EEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCC--CcCcccceEEEEEecCCCCEEEEEe
Q 006126          557 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG--TISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       557 ~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~g--h~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .|. +|+..+..-.++.|.+.|..+|+.+..+......+..  .....-..+.++|+| +++.|...+
T Consensus       178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTG  243 (262)
T 3nol_A          178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTG  243 (262)
T ss_dssp             EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred             EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEEEEC
Confidence            776 7765555546789999999999999999865332211  001111234999999 555555554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.89  E-value=2.6e-07  Score=95.00  Aligned_cols=202  Identities=11%  Similarity=0.056  Sum_probs=131.6

Q ss_pred             CCC--eEEEEeCCCeEEEEeCCCC----ceeeEee------c-cCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEc
Q 006126          425 PQD--LFAFGFDDSSILVHCPCTK----KTKAKLK------G-HQNRITCLAYSLSLNVLVSSGAD------AQLCVWDA  485 (660)
Q Consensus       425 p~~--~l~s~~~d~~I~iwd~~~~----~~~~~~~------~-~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~  485 (660)
                      +++  .++.|..++.|+++|+.+.    +..++++      . .......+...|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            677  5666778889999998755    5555553      1 11245667889999 77766555      78999999


Q ss_pred             CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--------------------cCcEEEEeCCCCceeeeec
Q 006126          486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------------------EGQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~  545 (660)
                      .+++.+......   .+..   ..-..+.|+|+++.++++.                    +.+|.+||+.+++.+.++.
T Consensus       172 ~T~~v~~~~~~~---~~~~---~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          172 YSFEPLGKWEID---RGDQ---YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             TTCCEEEECCSB---CTTC---CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEEccC---CCCc---cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            997654433221   1111   2344688999999988874                    6899999999998888886


Q ss_pred             CCCCCCCeEEEEE--ccCCCEEEEEec------CCeEEEEECCCCeeE--EEeecccccCCC--------CcCcccceEE
Q 006126          546 PDKMDLPITYATY--SCDGKCIYVSCK------SGHVKVFDTSTLELR--CQINLTAYAQPG--------TISLELYPLV  607 (660)
Q Consensus       546 ~~~~~~~v~~~~~--s~dg~~l~sg~~------dg~I~iwd~~~~~~~--~~~~~~~~~~~g--------h~~~~v~~~~  607 (660)
                      ..........+.|  +|+|++++++++      ++.|.+|..+.++..  ..+........+        .....-....
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            6322234455656  999999998885      468888776655422  222111100000        0000012448


Q ss_pred             EEEecCCCCEEEEEe-CCCeEEEEeCCC
Q 006126          608 IAAHPLEPNRIALGL-TNGRVHVIEPLE  634 (660)
Q Consensus       608 v~~sp~d~~~l~s~s-~Dg~v~iw~~~~  634 (660)
                      +.+|| |+++|.++. ..+.|.+||+..
T Consensus       326 I~lS~-DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          326 IDISL-DDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             EEECT-TSCEEEEEETTTTEEEEEECSS
T ss_pred             EEECC-CCCEEEEEeCCCCEEEEEEecC
Confidence            99999 788877666 468999999863

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.88  E-value=7.5e-07  Score=97.26  Aligned_cols=252  Identities=13%  Similarity=0.161  Sum_probs=154.0

Q ss_pred             EEEecCCCE----EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEE
Q 006126          317 LIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFS  391 (660)
Q Consensus       317 ~~~spdg~~----l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s  391 (660)
                      ++++|.+..    ++.++.|+.+.-+|..+++.            +|....+....     +  ..+. .....+..++.
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~------------~W~~~~~~~~~-----~--~~~~ssP~v~~g~V~v  171 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGET------------VWKVENSDIKV-----G--STLTIAPYVVKDKVII  171 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGG-----T--CBCCSCCEEETTEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCE------------EEeecCCCCCc-----c--ceeecCCEEECCEEEE
Confidence            456554444    78888899999888888874            56533221000     0  0111 11123445554


Q ss_pred             Ee-------CCcEEEEECCCCeEEEEEcCCCCC-------------------------------------e-EEEEEcCC
Q 006126          392 AS-------GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQ  426 (660)
Q Consensus       392 ~~-------dg~I~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~~sp~  426 (660)
                      ++       +|.|+.+|..+|+.+..+......                                     + ..+++.++
T Consensus       172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~  251 (599)
T 1w6s_A          172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG  251 (599)
T ss_dssp             CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred             EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence            43       589999999999998877632211                                     0 13456666


Q ss_pred             C-eEEEEeCC----------------CeEEEEeCCCCceeeEeeccCCC---------eEEEEEe-CCC---CEEEEEeC
Q 006126          427 D-LFAFGFDD----------------SSILVHCPCTKKTKAKLKGHQNR---------ITCLAYS-LSL---NVLVSSGA  476 (660)
Q Consensus       427 ~-~l~s~~~d----------------~~I~iwd~~~~~~~~~~~~~~~~---------v~~l~~s-p~~---~~l~s~s~  476 (660)
                      . .++.++.+                +.|..+|.++|+.+-.++.....         ..-+... .+|   ..++.++.
T Consensus       252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~  331 (599)
T 1w6s_A          252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR  331 (599)
T ss_dssp             TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECC
Confidence            6 77777655                38999999999998777542211         1112222 567   46777899


Q ss_pred             CCcEEEEEcCCCeeeeceeeee-------e--eec-------------cC-----C---CCCCeEEEEEecCCcEEEEE-
Q 006126          477 DAQLCVWDAVGWKKLCSKFLHS-------F--QTG-------------LV-----P---ETTIVNHIQFHPDQIHLLSI-  525 (660)
Q Consensus       477 dg~i~vwd~~~~~~~~~~~~~~-------~--~~~-------------~~-----~---~~~~v~~~~~sp~~~~l~~~-  525 (660)
                      +|.+.++|.++|+.+....+..       +  ..+             +.     |   ....-..++++|+...+++. 
T Consensus       332 ~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~  411 (599)
T 1w6s_A          332 NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGI  411 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE
T ss_pred             CcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEec
Confidence            9999999999988765433210       0  000             00     0   00001246677766655441 


Q ss_pred             ---------------------------------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEE
Q 006126          526 ---------------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY  566 (660)
Q Consensus       526 ---------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  566 (660)
                                                             ..+.|.-||+.+++.+-....   ..+...-.+...+..++
T Consensus       412 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~vf  488 (599)
T 1w6s_A          412 NHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVF  488 (599)
T ss_dssp             ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEE
T ss_pred             cccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEEE
Confidence                                                   236788899999988766542   12222222334677888


Q ss_pred             EEecCCeEEEEECCCCeeEEEeec
Q 006126          567 VSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       567 sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      .++.||.|+.||.++|+.+..+..
T Consensus       489 ~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          489 YGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCeEEEEECCCCCEEEEeeC
Confidence            899999999999999999998864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.87  E-value=2.8e-07  Score=87.92  Aligned_cols=197  Identities=11%  Similarity=-0.006  Sum_probs=129.0

Q ss_pred             eEEEEEcCCC-CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE--EEEeCCCCEEEEEeCCCcEE
Q 006126          406 QTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC--LAYSLSLNVLVSSGADAQLC  481 (660)
Q Consensus       406 ~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~--l~~sp~~~~l~s~s~dg~i~  481 (660)
                      +.++++.... .....+.|+ ++ ++.+.+.+|.|+++|+.+++.+..+ - ......  +++.. ++..+..-.++.+.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence            3445553222 234678887 35 7778888899999999999988877 2 233333  44432 23444445688999


Q ss_pred             EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEEEE
Q 006126          482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYAT  557 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~  557 (660)
                      +||..+.+.+......          ..-  ..+++|++.|+.+ .++.|+++|..+.+.+.++....+.   ..++.+.
T Consensus       120 V~D~~Tl~~~~ti~~~----------~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          120 TWSGMPPQRERTTRYS----------GEG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             EEETTTTEEEEEEECS----------SCC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEECCcCcEEEEEeCC----------Cce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            9999997665443332          111  2233667888776 5789999999999998887664322   2456677


Q ss_pred             EccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC----CC-cCcccceEEEEEecCCCCEEEEE
Q 006126          558 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----GT-ISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       558 ~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~----gh-~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      |. +|+..+....++.|.+.|..+++.+..+......+.    .+ ....  .+.++|+|....+++||
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v--lNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV--LNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC--EEEEEECTTTCCEEEEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc--eEEEEEcCCCCEEEEeC
Confidence            76 776554444578999999999999999986532110    11 1122  34999999555566665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.86  E-value=4e-06  Score=82.00  Aligned_cols=228  Identities=12%  Similarity=0.028  Sum_probs=140.9

Q ss_pred             CEEEEEeCCcEEEEECCCCeEE-----EEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          387 SHLFSASGGKISIFSLETFQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       387 ~~l~s~~dg~I~iwd~~~~~~~-----~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                      .+|+.+..+.|+.+++......     ..+.........++|++++  .+++...++.|..+++..+.....+.......
T Consensus         2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            4555666567888888754321     1122222346789999976  55555567899999987655433333333578


Q ss_pred             EEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e--cCcEEEEe
Q 006126          460 TCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EGQIDVYE  534 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~--d~~i~iwd  534 (660)
                      ..++++|++..++.+ ...+.|.++++.....   ..   +.....   .....++++|++..|+.+  .  .+.|..++
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~---~~~~~~---~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RV---LFDTGL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECSSC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EE---EEECCC---CCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            899999976555544 4567899999875221   11   111111   357899999976665553  2  46888888


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      +. +.....+... .......+++++++..|+.+.. .+.|.++|.........+..      +  ..   ...++..  
T Consensus       153 ~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------~--~~---P~gi~~d--  217 (267)
T 1npe_A          153 MD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------L--QY---PFAVTSY--  217 (267)
T ss_dssp             TT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------C--CS---EEEEEEE--
T ss_pred             cC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------C--CC---ceEEEEe--
Confidence            74 4433333221 2456789999998877766554 58999999986544333321      1  11   2245542  


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          614 EPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       614 d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                      ++..+++....+.|.+++..+++..
T Consensus       218 ~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          218 GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCeEEEEeCCCCCce
Confidence            3445555556689999999988753

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.84  E-value=1.3e-06  Score=95.50  Aligned_cols=293  Identities=12%  Similarity=0.048  Sum_probs=173.1

Q ss_pred             CCEEEEEEC-CCcEEEEec-cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE--eCCE----EEEEe-
Q 006126          323 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSH----LFSAS-  393 (660)
Q Consensus       323 g~~l~s~s~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~----l~s~~-  393 (660)
                      +..++.++. ++.+.-+|. .+++.            +|....+.................+++  .+..    ++.++ 
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTI------------LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL  129 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcE------------EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence            445666666 788888888 67764            565433221100000000000112344  4333    66777 


Q ss_pred             CCcEEEEECCCCeEEEEEcCCC----CCeEE-EEEcCCCeEEEEe------CCCeEEEEeCCCCceeeEeeccCCC----
Q 006126          394 GGKISIFSLETFQTLATFANPP----PIATY-FILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQNR----  458 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~~~~~~~----~~v~~-v~~sp~~~l~s~~------~d~~I~iwd~~~~~~~~~~~~~~~~----  458 (660)
                      |+.+..+|..+|+.+.......    ..+.+ ..+ .++.+++++      .++.|+.+|.++|+.+-.+......    
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~  208 (599)
T 1w6s_A          130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL  208 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence            9999999999999988765322    01211 111 145555554      3899999999999988766532110    


Q ss_pred             ---------------------------------e-EEEEEeCCCCEEEEEeCCC----------------cEEEEEcCCC
Q 006126          459 ---------------------------------I-TCLAYSLSLNVLVSSGADA----------------QLCVWDAVGW  488 (660)
Q Consensus       459 ---------------------------------v-~~l~~sp~~~~l~s~s~dg----------------~i~vwd~~~~  488 (660)
                                                       + ..+++.++...++.++.++                .|..+|.++|
T Consensus       209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG  288 (599)
T 1w6s_A          209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG  288 (599)
T ss_dssp             BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred             cccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence                                             0 1345677777888777653                7999999998


Q ss_pred             eeeeceeeeeeeeccCC----CCCCeEEEEEe-cCC---cEEEE-EecCcEEEEeCCCCceeeeecCCC-----------
Q 006126          489 KKLCSKFLHSFQTGLVP----ETTIVNHIQFH-PDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDK-----------  548 (660)
Q Consensus       489 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~s-p~~---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-----------  548 (660)
                      +..-.....    .|..    ......-+... .+|   ..++. +.+|.++++|.++|+.+.......           
T Consensus       289 ~~~W~~q~~----~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~  364 (599)
T 1w6s_A          289 EAKFGYQKT----PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLK  364 (599)
T ss_dssp             CEEEEEESS----TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTT
T ss_pred             ceeeEeecC----CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccC
Confidence            765332221    1110    00011112222 567   44554 488999999999999876554211           


Q ss_pred             CCCCe--------------------------EEEEEccCCCEEEEEe---------------------------------
Q 006126          549 MDLPI--------------------------TYATYSCDGKCIYVSC---------------------------------  569 (660)
Q Consensus       549 ~~~~v--------------------------~~~~~s~dg~~l~sg~---------------------------------  569 (660)
                      ...++                          ..++++|+..++++..                                 
T Consensus       365 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~  444 (599)
T 1w6s_A          365 TGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKG  444 (599)
T ss_dssp             TCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTS
T ss_pred             CCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcC
Confidence            01111                          2457777777665532                                 


Q ss_pred             ------cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCC
Q 006126          570 ------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP  643 (660)
Q Consensus       570 ------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~  643 (660)
                            .+|.|.-||+.+++.+......         .+.+...++  . .+..+..++.||.++.||..+|+..|....
T Consensus       445 ~~~~~~~~G~l~A~D~~tG~~~W~~~~~---------~~~~~g~~~--t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          445 DRQNYEGLGQIKAYNAITGDYKWEKMER---------FAVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             BTTTTBCCEEEEEECTTTCCEEEEEEES---------SCCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcccCCCcCeEEEEECCCCCEEeEecCC---------CCccCcceE--e-cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence                  3478999999999988877531         111100121  1 466777899999999999999999997654


Q ss_pred             C
Q 006126          644 F  644 (660)
Q Consensus       644 ~  644 (660)
                      +
T Consensus       513 ~  513 (599)
T 1w6s_A          513 P  513 (599)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.81  E-value=5.7e-06  Score=90.40  Aligned_cols=268  Identities=11%  Similarity=0.046  Sum_probs=158.1

Q ss_pred             CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeC----C-EEEEEe----
Q 006126          323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG----S-HLFSAS----  393 (660)
Q Consensus       323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~----~-~l~s~~----  393 (660)
                      +..++.++.|+.+.-+|..+++.            +|...........  .....++.   ..+    + .+++++    
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~------------~W~~~~~~~~~~~--~~~~sP~v---~~~~~~G~~~v~vg~~~~e  179 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKV------------VWKKKFADHGAGY--TMTGAPTI---VKDGKTGKVLLIHGSSGDE  179 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCE------------EEEEECSCGGGTC--BCCSCCEE---EECTTTCCEEEEECCBCGG
T ss_pred             CCEEEEEeCCCEEEEEECCCCCE------------EeeecCCCCCcCc--ccccCCEE---eCCCcCCcEEEEEeccccc
Confidence            45678888899999898888875            5553221100000  00111111   112    1 555543    


Q ss_pred             ---CCcEEEEECCCCeEEEEEcCCCCCe-----------------------------------------EEEEEcCCC-e
Q 006126          394 ---GGKISIFSLETFQTLATFANPPPIA-----------------------------------------TYFILLPQD-L  428 (660)
Q Consensus       394 ---dg~I~iwd~~~~~~~~~~~~~~~~v-----------------------------------------~~v~~sp~~-~  428 (660)
                         ++.|..+|..+|+.+.........+                                         ..+++.|+. .
T Consensus       180 ~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~  259 (582)
T 1flg_A          180 FGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT  259 (582)
T ss_dssp             GCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTE
T ss_pred             cCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCE
Confidence               5789999999999887654321000                                         134566766 6


Q ss_pred             EEEEeC--------------------C----CeEEEEeCCCCceeeEeec--cC--------CCeEEEEEe-CCCC---E
Q 006126          429 FAFGFD--------------------D----SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSLN---V  470 (660)
Q Consensus       429 l~s~~~--------------------d----~~I~iwd~~~~~~~~~~~~--~~--------~~v~~l~~s-p~~~---~  470 (660)
                      ++.+..                    |    +.|..+|..+|+.+-.++.  |.        .++. +... .+|+   .
T Consensus       260 vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~  338 (582)
T 1flg_A          260 IIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKA  338 (582)
T ss_dssp             EEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEE
T ss_pred             EEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEE
Confidence            665552                    2    5899999999999877753  21        1111 1222 4674   6


Q ss_pred             EEEEeCCCcEEEEEcCCCeeeeceeeee-e--eec-------------cCC--------CC------------CCeEEEE
Q 006126          471 LVSSGADAQLCVWDAVGWKKLCSKFLHS-F--QTG-------------LVP--------ET------------TIVNHIQ  514 (660)
Q Consensus       471 l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~--~~~-------------~~~--------~~------------~~v~~~~  514 (660)
                      ++.++.+|.++++|.++|+.+....+.. .  ..+             ..+        ..            ..-..++
T Consensus       339 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a  418 (582)
T 1flg_A          339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMA  418 (582)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCE
T ss_pred             EEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCce
Confidence            8889999999999999988764433220 0  000             000        00            0011456


Q ss_pred             EecCCcEEEE-Ee---------------------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126          515 FHPDQIHLLS-IH---------------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       515 ~sp~~~~l~~-~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                      ++|+...+++ ..                                 ++.|.-||+.+++.+-+....   .++..-....
T Consensus       419 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~t  495 (582)
T 1flg_A          419 YSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLAT  495 (582)
T ss_dssp             ECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEE
T ss_pred             ECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEe
Confidence            6776555544 21                                 477999999999987665432   2222222233


Q ss_pred             CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEE
Q 006126          561 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALG  621 (660)
Q Consensus       561 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~  621 (660)
                      .+..++.|+.||.++.||.++|+.+..+...         ..+...-+.|.. +|+ ++++.
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~---------~g~~a~P~~y~~-~G~qYv~~~  547 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTG---------SGIVSPPITWEQ-DGEQYLGVT  547 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS---------SCCCSCCEEEEE-TTEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCC---------CCcccCceEEEE-CCEEEEEEE
Confidence            5778888999999999999999999988752         112222356666 666 44443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.80  E-value=5e-06  Score=90.90  Aligned_cols=246  Identities=13%  Similarity=0.086  Sum_probs=152.1

Q ss_pred             EEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC----CeE-EEEEcC---CC--eEEEEe------CCCeEEEEeCCC
Q 006126          383 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----IAT-YFILLP---QD--LFAFGF------DDSSILVHCPCT  445 (660)
Q Consensus       383 ~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~----~v~-~v~~sp---~~--~l~s~~------~d~~I~iwd~~~  445 (660)
                      ++.+..++.++ ++.|..+|..+|+.+........    .+. ......   +|  .+++++      .++.|+.+|..+
T Consensus       114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence            34466777777 99999999999999887653321    111 111112   23  555554      378999999999


Q ss_pred             CceeeEeeccCCCe-----------------------------------------EEEEEeCCCCEEEEEeC--------
Q 006126          446 KKTKAKLKGHQNRI-----------------------------------------TCLAYSLSLNVLVSSGA--------  476 (660)
Q Consensus       446 ~~~~~~~~~~~~~v-----------------------------------------~~l~~sp~~~~l~s~s~--------  476 (660)
                      |+.+-........+                                         ..++++|+...++.++.        
T Consensus       194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred             CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence            98876543211000                                         13466777777776663        


Q ss_pred             ------------C----CcEEEEEcCCCeeeeceeeeeeeeccC-----CCCCCeEEEEEe-cCCc---EEEE-EecCcE
Q 006126          477 ------------D----AQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQI---HLLS-IHEGQI  530 (660)
Q Consensus       477 ------------d----g~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s-p~~~---~l~~-~~d~~i  530 (660)
                                  |    +.|..+|.++|+..-.....    .|.     .....+ -+... .+|+   .++. +.+|.+
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~----~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l  348 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT----PNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFF  348 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS----TTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC----CCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceE
Confidence                        2    57999999998765432221    111     000111 12222 4674   4555 488999


Q ss_pred             EEEeCCCCceeeeecCCCC-----------CCC--------------------------------eEEEEEccCCCEEEE
Q 006126          531 DVYEAPTLNHTSQLVPDKM-----------DLP--------------------------------ITYATYSCDGKCIYV  567 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~~~-----------~~~--------------------------------v~~~~~s~dg~~l~s  567 (660)
                      +++|.++|+.+..+.....           ..+                                -..++++|+...+++
T Consensus       349 ~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv  428 (582)
T 1flg_A          349 YVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYV  428 (582)
T ss_dssp             EEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEE
T ss_pred             EEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEE
Confidence            9999999998765543210           000                                013567776666555


Q ss_pred             Ee---------------------------------cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          568 SC---------------------------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       568 g~---------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      ..                                 .+|.|+-||+.+|+.+.......         +.+...+.  . .
T Consensus       429 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-a  496 (582)
T 1flg_A          429 PANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLA--T-A  496 (582)
T ss_dssp             EEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEE--E-T
T ss_pred             echhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceE--e-C
Confidence            43                                 25789999999999988776421         11111122  1 3


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          615 PNRIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                      +.+++.++.||.++.||..+|+..|....+.
T Consensus       497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~  527 (582)
T 1flg_A          497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence            5678889999999999999999999766553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.78  E-value=3.6e-06  Score=81.30  Aligned_cols=201  Identities=12%  Similarity=0.044  Sum_probs=132.4

Q ss_pred             CCeEEEEEecCCCEEEEEEC--CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL  389 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l  389 (660)
                      .....++|+|+|...++.+.  ++.|.+.|..+++.                     +..... +.......+++.++.|
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------------------~~~i~l-~~~~fgeGi~~~g~~l   78 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------------------ENIHKM-DDSYFGEGLTLLNEKL   78 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------------------EEEEEC-CTTCCEEEEEEETTEE
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------------------EEEEec-CCCcceEEEEEeCCEE
Confidence            34689999999754444443  46887777666543                     222211 1112233566666677


Q ss_pred             EEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-----CCeE
Q 006126          390 FSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRIT  460 (660)
Q Consensus       390 ~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-----~~v~  460 (660)
                      ..+.  ++.+.++|..+++.+.++... ...   ..+++|| .++++..++.|.++|..+.+.+..+.-..     ..++
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            7766  799999999999999998643 222   3356688 66666678899999999988887765321     2467


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee----ccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEe
Q 006126          461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYE  534 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd  534 (660)
                      .+.|. +|...+....++.|.+.|..+++......+.....    ...+.....+.++|+|+++.+++ + ..+.|.+.+
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            88888 77555555567899999999987655444321100    00000025689999999987777 5 567888888


Q ss_pred             CCCC
Q 006126          535 APTL  538 (660)
Q Consensus       535 ~~~~  538 (660)
                      +...
T Consensus       235 l~~~  238 (266)
T 2iwa_A          235 LHLV  238 (266)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            7543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=4.7e-06  Score=78.82  Aligned_cols=200  Identities=12%  Similarity=0.023  Sum_probs=127.4

Q ss_pred             eEEEEEcCCC--CCeEEEEEcCCC-eEEEEeCC--CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCc
Q 006126          406 QTLATFANPP--PIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ  479 (660)
Q Consensus       406 ~~~~~~~~~~--~~v~~v~~sp~~-~l~s~~~d--~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~  479 (660)
                      +.+.++ .|.  .....+.|++ + ++.+.+.+  +.|+.+|+.+++.+....-.. ........+++..|. ..-.++.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCE
Confidence            445555 343  3356788886 6 66666665  489999999999988876432 222222333344444 4456889


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEE
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY  555 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~  555 (660)
                      +.+||..+.+.+...+..     .     .-  ..+.+++..|+++ .++.|.++|..+.+.+.++....+.   ..++.
T Consensus        87 v~v~D~~tl~~~~ti~~~-----~-----~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYP-----G-----EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEEEETTTTEEEEEEECS-----S-----CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEECCcCcEEEEEeCC-----C-----Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            999999997655443332     1     11  2334567777765 5788999999999988888764322   34556


Q ss_pred             EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc---CcccceEEEEEecCCCCEEEEEe
Q 006126          556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI---SLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~---~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      +.|. +|+..+..-.+..|.+.|..+|+.+..+......+....   ...-..+.++|+| +++.|...+
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTG  222 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTG  222 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEEC
Confidence            6665 666554444578999999999999999986644322100   1111234999999 455544444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.77  E-value=4.5e-07  Score=96.60  Aligned_cols=184  Identities=15%  Similarity=0.079  Sum_probs=127.6

Q ss_pred             CC-eEE-EEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEE-e-CCCCEEEEEeC------------------CCcEEE
Q 006126          426 QD-LFA-FGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAY-S-LSLNVLVSSGA------------------DAQLCV  482 (660)
Q Consensus       426 ~~-~l~-s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~-s-p~~~~l~s~s~------------------dg~i~v  482 (660)
                      || +++ +...++.|.+.|+.+.++...+.- ....+..+.+ + |+++++++++.                  ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            77 444 444566899999999998875542 2345788888 5 99999988852                  457999


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec----------------------------------
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE----------------------------------  527 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d----------------------------------  527 (660)
                      +|..+.+......+     +     +....++++|+|+++++ +.+                                  
T Consensus       180 ID~~t~~v~~qI~V-----g-----g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          180 VDADKWEVAWQVLV-----S-----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             EETTTTEEEEEEEE-----S-----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             EECCCCeEEEEEEe-----C-----CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence            99998554333222     2     22346789999999988 422                                  


Q ss_pred             ----CcEEEEeCCC--Cce-eeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCe------------eEEE
Q 006126          528 ----GQIDVYEAPT--LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE------------LRCQ  587 (660)
Q Consensus       528 ----~~i~iwd~~~--~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~------------~~~~  587 (660)
                          +.|.+.|.++  ++. +..+..   .....++.++|||+++++++. +..|.++|+.+.+            ....
T Consensus       250 ~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             SEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             eeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                1377778776  444 444533   345668999999998887664 6899999999653            2222


Q ss_pred             eecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          588 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       588 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      +.      .|     .....++|+| +|...++.--|+.|.+|++.+
T Consensus       327 v~------vG-----~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          327 PE------LG-----LGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CB------CC-----SCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred             cC------CC-----CCcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence            21      12     1245799999 785556777899999999977

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.74  E-value=1.5e-06  Score=82.84  Aligned_cols=184  Identities=11%  Similarity=0.077  Sum_probs=125.0

Q ss_pred             CCeEEEEEeCCE-EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeE--EEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          377 DSISCFALRGSH-LFSAS-GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       377 ~~v~~v~~s~~~-l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~--~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      .....+.|+++. ..+.+ +|.|+++|+++++.++.+ -. ....  .+++..+...+....++.+.+||..+.+.+.++
T Consensus        55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            345788888444 44555 789999999999998887 32 2332  344433324444557889999999999999988


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 006126          453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID  531 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~  531 (660)
                      .... .-..+  .+|++.|+.+..++.|.++|..+.+......+..-....    ..++.+.|. +|+..+.. .++.|.
T Consensus       133 ~~~~-eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v----~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          133 RYSG-EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV----ELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             ECSS-CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             eCCC-ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc----ccccccEEe-CCEEEEEECCCCeEE
Confidence            7432 22333  357888888777899999999997765554443111111    245677877 77655445 678999


Q ss_pred             EEeCCCCceeeeecCC-----------CCCCCeEEEEEccCCCEEEEEec
Q 006126          532 VYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       532 iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      +.|.++++.+..+...           ......+.++|+|+++.|+..+.
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999988776542           11346788999998765555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=0.00037  Score=79.40  Aligned_cols=333  Identities=11%  Similarity=0.012  Sum_probs=193.9

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCC----CCCCCCeEEEEEec--CCCEEEEEECCCcEEEEeccC
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~----~~h~~~V~~~~~sp--dg~~l~s~s~dg~i~vw~~~~  342 (660)
                      ...++|..|..|+.++.+..||..+    ..+..+....    ......|+++....  +|. |..++.++.+..|+..+
T Consensus        72 ~~d~~g~~lWigt~~~Gl~~~d~~~----~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~  146 (781)
T 3v9f_A           72 YTDPVQPVIWIATQRAGLNAYNYET----QSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDIAT  146 (781)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTT----TEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEETTT
T ss_pred             EEcCCCCEEEEEeCCCCcceECCCC----CeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEEECCC
Confidence            3345565477788875689999873    4555442110    00134688988887  776 45566445566677654


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc-------C
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-------N  413 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~  413 (660)
                      ...           ..+......       .-....|.++... ...|..+. ++-+..||..+++......       .
T Consensus       147 ~~~-----------~~~~~~~~~-------~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l  208 (781)
T 3v9f_A          147 GKF-----------THYNKSTVP-------ALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSL  208 (781)
T ss_dssp             TEE-----------EEESTTTCT-------TCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------
T ss_pred             CeE-----------EeeccCccc-------CCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccC
Confidence            432           112111000       0123458888877 66666677 5579999988775533211       1


Q ss_pred             CCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126          414 PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  486 (660)
Q Consensus       414 ~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~  486 (660)
                      ....|.++...++|.|..|+.+ -+.+||..+++.......       ....|.++...++|. |..|+..+-|.++|..
T Consensus       209 ~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          209 PGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred             CCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence            2356888888888855556655 688999877654322111       235689998888775 4556665678899988


Q ss_pred             CCeeeecee--ee---eeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec--------CCCCCCCe
Q 006126          487 GWKKLCSKF--LH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV--------PDKMDLPI  553 (660)
Q Consensus       487 ~~~~~~~~~--~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~v  553 (660)
                      ++.......  +.   .......-....|.++...++|..-+...++.|..++..+.... .+.        ..-....|
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v  365 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVV  365 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCE
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcce
Confidence            754221111  00   00000000115799999999998776667888999998765432 221        11124568


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          554 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       554 ~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      .+++..++|.+. .|+.++-|..|+..+++.... ...    .+-....|+  ++...+ ++.+.+ |+.++.|..++..
T Consensus       366 ~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~-~~~----~~~~~~~v~--~i~~d~-~g~lWi-gt~~~Gl~~~~~~  435 (781)
T 3v9f_A          366 SSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYN-KEN----RELLSNSVL--CSLKDS-EGNLWF-GTYLGNISYYNTR  435 (781)
T ss_dssp             EEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC----------CCCSBEE--EEEECT-TSCEEE-EETTEEEEEECSS
T ss_pred             EEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEc-cCC----CCCCCcceE--EEEECC-CCCEEE-EeccCCEEEEcCC
Confidence            999988888755 555566699999876543221 110    011123344  777766 566554 6666778999887


Q ss_pred             CCce
Q 006126          634 ESEV  637 (660)
Q Consensus       634 ~~~~  637 (660)
                      +++.
T Consensus       436 ~~~~  439 (781)
T 3v9f_A          436 LKKF  439 (781)
T ss_dssp             SCEE
T ss_pred             CCcE
Confidence            7654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.72  E-value=2.1e-06  Score=81.86  Aligned_cols=184  Identities=12%  Similarity=0.043  Sum_probs=125.1

Q ss_pred             eEEEEEe-CCEEEEEe-CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126          379 ISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL  452 (660)
Q Consensus       379 v~~v~~s-~~~l~s~~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~  452 (660)
                      ...+.|+ +.+..+++ +|  .|+++|+.+++.++.+..... .......+++  ..+..-.++.+.+||..+.+.+.++
T Consensus        45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            4788888 54555555 55  899999999999988864433 2222233344  3344456889999999999999988


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 006126          453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID  531 (660)
Q Consensus       453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~  531 (660)
                      ....   ....++++++.|+.+..++.|.++|..+.+......+.  ..+...  ..++.+.|. +|+..+.. .++.|.
T Consensus       124 ~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~~--~~lNELe~~-~G~lyan~w~~~~I~  195 (262)
T 3nol_A          124 NYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEEL--PELNELEWV-DGEIFANVWQTNKIV  195 (262)
T ss_dssp             ECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEEC--CCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             ECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCccc--cccceeEEE-CCEEEEEEccCCeEE
Confidence            7432   22334457777777666788999999997665544433  111110  245567776 67655545 678999


Q ss_pred             EEeCCCCceeeeecCCC----------CCCCeEEEEEccCCCEEEEEecC
Q 006126          532 VYEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       532 iwd~~~~~~~~~~~~~~----------~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                      +.|.++++.+..+....          .....+.++|+|+++.|+..+..
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            99999999988875421          12456889999998887776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=0.00012  Score=83.54  Aligned_cols=327  Identities=12%  Similarity=0.016  Sum_probs=192.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeccCcCCCcceeeeec-----------CCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEec
Q 006126          272 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-----------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW  340 (660)
Q Consensus       272 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l-----------~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~  340 (660)
                      ++| .|..|+..+-+.++|..+    ..+..+..           +.......|.++...++|. |-.|+.++-|..|+.
T Consensus       267 ~~g-~lWigt~~~Gl~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~  340 (781)
T 3v9f_A          267 KDN-KLWIATELNGIMILDLQQ----NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN  340 (781)
T ss_dssp             TTS-EEEEEESSSCEEEEETTC----C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred             CCC-CEEEEeCCCCeEEECCCC----CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence            444 455566656678888763    22222111           0111356799999999987 566776777777776


Q ss_pred             cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEE---cCCC
Q 006126          341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF---ANPP  415 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~---~~~~  415 (660)
                      .....           ..+.........   ..-....|.++... ...|..|+ ++-|..||..++......   ....
T Consensus       341 ~~~~~-----------~~~~~~~~~~~~---~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~  406 (781)
T 3v9f_A          341 APPTF-----------HTWSYSPTQMNE---SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLS  406 (781)
T ss_dssp             SCCSC-----------EEEC----CCCS---SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred             CCCcc-----------eeeccCcccccc---CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence            54432           112110000000   00133568888888 45566666 677999998765432211   1234


Q ss_pred             CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126          416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS  493 (660)
Q Consensus       416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~  493 (660)
                      ..|.++...++|.|..|+.++-+..+|..+++......  .....|.++...++|.+.+ |+. +-|..||..+++....
T Consensus       407 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          407 NSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             SBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEE
T ss_pred             cceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEec
Confidence            57888888877866667877789999987765433221  1346789998888876544 555 5688999887542111


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC--CCCCCeEEEEEccCCCEEEEEecC
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                      .... ......   ..|.++...++|...+.+.++.+..||..+++. ..+...  -....|.++..+++|.+.++.. +
T Consensus       485 ~~~~-~~~~~~---~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~  558 (781)
T 3v9f_A          485 YDTS-NSQLLE---NFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-E  558 (781)
T ss_dssp             ECTT-TSSCSC---SCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-T
T ss_pred             ccCc-cccccc---ceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-C
Confidence            0000 000001   478999999999887776656688899876543 333211  1245789999999998666554 6


Q ss_pred             CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          572 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       572 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      |.|..||..+++.. .+....    |-....++  ++...+ +|.+.+++ .+| |..+++.+.+
T Consensus       559 Glv~~~d~~~~~~~-~~~~~~----gl~~~~i~--~i~~d~-~g~lW~~t-~~G-l~~~~~~~~~  613 (781)
T 3v9f_A          559 GLVCFPSARNFDYQ-VFQRKE----GLPNTHIR--AISEDK-NGNIWAST-NTG-ISCYITSKKC  613 (781)
T ss_dssp             EEEEESCTTTCCCE-EECGGG----TCSCCCCC--EEEECS-SSCEEEEC-SSC-EEEEETTTTE
T ss_pred             CceEEECCCCCcEE-EccccC----CCCCceEE--EEEECC-CCCEEEEc-CCc-eEEEECCCCc
Confidence            65589998877633 332211    21123344  777777 67766654 444 7777877654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.65  E-value=1.6e-05  Score=80.17  Aligned_cols=233  Identities=11%  Similarity=-0.015  Sum_probs=144.6

Q ss_pred             eEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC-------------------CCCeEEEEEcC-CCeEEEEeCC
Q 006126          379 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-------------------PPIATYFILLP-QDLFAFGFDD  435 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~-------------------~~~v~~v~~sp-~~~l~s~~~d  435 (660)
                      ..++++.  +++++++. ++.|..|+..+++........                   ......+++.+ ++.|+++...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            4456777  56566666 789999998765543211100                   12467899998 5656666555


Q ss_pred             CeEEEEeCCCCceeeEeec-----cCCCeEEEEEeC-CCCEEEEEeC-----------------CCcEEEEEcCCCeeee
Q 006126          436 SSILVHCPCTKKTKAKLKG-----HQNRITCLAYSL-SLNVLVSSGA-----------------DAQLCVWDAVGWKKLC  492 (660)
Q Consensus       436 ~~I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp-~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~  492 (660)
                      +.|..+|..++.. ..+..     .......+++.+ +|+..++...                 ++.|..||..+++...
T Consensus       101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            6688999876542 22221     123578899999 9987776432                 3678889987654211


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~sg  568 (660)
                            ...+-    .....++++|+|+.|+++  ..+.|.+|++....  ....+..  ..+ ...++++++|++.++.
T Consensus       180 ------~~~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          180 ------LLKEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             ------EEEEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred             ------eccCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence                  11111    245679999999977764  55789999986421  1122211  123 7889999999977766


Q ss_pred             ec----------CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          569 CK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       569 ~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ..          .+.|..+|.. ++.+..+....    |..-.  .+..+++ . ++.++++....+.|.++++..
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~~~~--~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PFAGE--HFEQIQE-H-DGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TTTTS--CCCEEEE-E-TTEEEEECSSCSEEEEEEC--
T ss_pred             cCcccccccCCCccEEEEECCC-CCEEEEEECCC----CCccc--cceEEEE-e-CCEEEEeecCCCceEEEeccc
Confidence            54          4678889874 77776665321    11011  2335655 3 566677766788999999864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.62  E-value=1.5e-05  Score=75.36  Aligned_cols=187  Identities=13%  Similarity=0.091  Sum_probs=125.8

Q ss_pred             CCCeEEEEEe-CCEEEEEe-C--CcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCCeEEEEeCCCeEEEEeCCCCceee
Q 006126          376 KDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       376 ~~~v~~v~~s-~~~l~s~~-d--g~I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      ......+.|+ +.+..+++ +  +.|+.+|+.+++.++.+....... -.++...+......-.++.+.+||..+.+.+.
T Consensus        20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence            3456788999 54445555 4  489999999999998886443321 23444332244455678899999999999999


Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ  529 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~  529 (660)
                      ++..... -..+  .+++..|+.+..++.|.++|..+.+......+..-....    ..++.+.+. +|+..+.. .+..
T Consensus       100 ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~----~~lNeLe~~-~G~lyanvw~s~~  171 (243)
T 3mbr_X          100 RFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL----DNLNELEWV-NGELLANVWLTSR  171 (243)
T ss_dssp             EEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc----ccceeeEEe-CCEEEEEECCCCe
Confidence            8874332 2344  456777777777889999999997665544443111111    245667766 66655445 6789


Q ss_pred             EEEEeCCCCceeeeecCCC-----------CCCCeEEEEEccCCCEEEEEec
Q 006126          530 IDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                      |.+.|.++++.+..+....           .....+.++++|+++.|+..+.
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            9999999999888765321           1246688999998877766654

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=98.61  E-value=2.3e-08  Score=76.46  Aligned_cols=57  Identities=18%  Similarity=0.314  Sum_probs=48.6

Q ss_pred             ccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc--------HHHHHHHHhcC-chHhHHHhhhh
Q 006126           63 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--------INYFREYITSG-EWDNAEKYLSA  119 (660)
Q Consensus        63 ~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~--------~~~l~~~i~~G-~w~~~~~~l~~  119 (660)
                      ..++||++||++||+|.||.+||++|++||+|...        ...|...|++| .|.+++..+..
T Consensus         3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~   68 (90)
T 2xtc_A            3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINE   68 (90)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcC
Confidence            35899999999999999999999999999998762        68888888888 67777776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.51  E-value=5.8e-05  Score=75.98  Aligned_cols=245  Identities=11%  Similarity=-0.003  Sum_probs=147.9

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCcee---------eecccCCCCCCeEEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM---------TNDIAADPKDSISCF  382 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~v  382 (660)
                      ....+++|.++|+.+.++..++.|..|+..+...           ..|.......-         ....  .....+..+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~p~gi   85 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----------VDFAYASPYWNKAFCENSTDAEKR--PLCGRTYDI   85 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----------EEEEESCTTCCHHHHTTCCCGGGH--HHHCCEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----------EEEecccccccccccccccchhcc--ccCCCCceE
Confidence            4567788999998777888888998887665433           12211000000         0000  011346788


Q ss_pred             EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcC-CC-eEEEEeC-----------------C
Q 006126          383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-----PPPIATYFILLP-QD-LFAFGFD-----------------D  435 (660)
Q Consensus       383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~~sp-~~-~l~s~~~-----------------d  435 (660)
                      ++.  +..|+.+. .+.|..+|..++.. ..+..     .......+++.+ +| ..++...                 +
T Consensus        86 ~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  164 (322)
T 2fp8_A           86 SYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT  164 (322)
T ss_dssp             EEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred             EEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence            887  45677776 55688888776543 22211     123467899999 88 4444322                 3


Q ss_pred             CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126          436 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ  514 (660)
Q Consensus       436 ~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  514 (660)
                      +.|..||..+++...... .......++|+|+|+.|+.+ +..+.|.+|++......   ... .... .+  + ...++
T Consensus       165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---~~~-~~~~-~~--g-P~gi~  235 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---TAE-VLVK-IP--N-PGNIK  235 (322)
T ss_dssp             EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT---CEE-EEEE-CS--S-EEEEE
T ss_pred             ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC---ccc-eEEe-CC--C-CCCeE
Confidence            679999987775433222 22345679999999866555 55689999998753210   011 1111 11  3 67899


Q ss_pred             EecCCcEEEEE-e----------cCcEEEEeCCCCceeeeecCCCC--CCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          515 FHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       515 ~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      +.++|++.++. .          .+.|..+|. .++.+..+.....  ...++.+++ .++++.++...++.|.++++..
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            99999877764 4          467889987 5777776654211  234666666 4565555555678898888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.51  E-value=0.00094  Score=67.19  Aligned_cols=276  Identities=9%  Similarity=0.086  Sum_probs=152.1

Q ss_pred             CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126          311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL  389 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l  389 (660)
                      ...+.++.|.+++..++ ++.+|.|. +..+.++             -|.......      ......+.++.+. +..+
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~-------------tW~~~~~~~------~~~~~~~~~i~~~~~~~~   93 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQ-------------TWEPRTLVL------DHSDYRFNSVSFQGNEGW   93 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTS-------------SCEECCCCC------SCCCCEEEEEEEETTEEE
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCC-------------CCeECCCCC------CCCCccEEEEEecCCeEE
Confidence            45799999988887666 55666552 2222221             122111000      0123457888888 5555


Q ss_pred             EEEeCCcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEE
Q 006126          390 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAY  464 (660)
Q Consensus       390 ~s~~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~  464 (660)
                      +.+..+.|.. ..+.|+.-....   .....+..+.+.+++ .++++ .++.|..- ...|+.-.. ...+...+..+.+
T Consensus        94 ~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           94 IVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             EEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred             EEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence            5544675543 333343333322   233457778877777 55544 45654332 122332222 2345567899999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 006126          465 SLSLNVLVSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~  542 (660)
                      .|++.+++++...+..+-+|-  .+++.     +.   ....   ..+..+.+.+++..++++.+|.+++.+...++.-.
T Consensus       171 ~~~~~~~~~g~~G~~~~S~d~gG~tW~~-----~~---~~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~  239 (327)
T 2xbg_A          171 SPSGEYVAVSSRGSFYSTWEPGQTAWEP-----HN---RTTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG  239 (327)
T ss_dssp             CTTSCEEEEETTSSEEEEECTTCSSCEE-----EE---CCSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred             cCCCcEEEEECCCcEEEEeCCCCCceeE-----CC---CCCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence            999888776654443444442  33221     11   1122   46889999999988877888888877533244333


Q ss_pred             eecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          543 QLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       543 ~~~~~--~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      .+...  .+...+.++++.+++..++++. +|.| .+..+.|+.-..+....    +. ...++  ++.|.+ ++ .++.
T Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~----~~-~~~~~--~v~~~~-~~-~~~~  308 (327)
T 2xbg_A          240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK----KV-PSNFY--KILFFS-PD-QGFI  308 (327)
T ss_dssp             CCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT----TS-SSCCC--EEEEEE-TT-EEEE
T ss_pred             eccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC----CC-CCCeE--EEEEEC-CC-ceEE
Confidence            33211  1234588999998888777664 6766 44555554333332110    00 12345  788876 44 5667


Q ss_pred             EeCCCeEEEEeC
Q 006126          621 GLTNGRVHVIEP  632 (660)
Q Consensus       621 ~s~Dg~v~iw~~  632 (660)
                      ++.+|.|.-++-
T Consensus       309 ~G~~G~i~~~~~  320 (327)
T 2xbg_A          309 LGQKGILLRYVT  320 (327)
T ss_dssp             ECSTTEEEEECC
T ss_pred             EcCCceEEEEcC
Confidence            778998776654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.49  E-value=0.00034  Score=71.19  Aligned_cols=232  Identities=12%  Similarity=0.012  Sum_probs=144.2

Q ss_pred             EEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126          381 CFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN  457 (660)
Q Consensus       381 ~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~  457 (660)
                      |.+.. ..+|+.+....|+..++........+.. ......++|++.+  ++++-...+.|..+++..+.....+.....
T Consensus        38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~  116 (349)
T 3v64_C           38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE  116 (349)
T ss_dssp             EEESSSCCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             ccccccCceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC
Confidence            33333 4556666666788888876555444433 3457799999765  555656778999999886654443333334


Q ss_pred             CeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEE
Q 006126          458 RITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVY  533 (660)
Q Consensus       458 ~v~~l~~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iw  533 (660)
                      ....+++.+.+..| ++-...+.|.+.++.....      ..+.....   .....++++|.+..|+.+  .. +.|..+
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~l---~~P~~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECTTC---SCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------EEEEeCCC---CCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence            56789999855554 5555578899999876321      11121222   357899999976666653  44 779999


Q ss_pred             eCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126          534 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP  612 (660)
Q Consensus       534 d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp  612 (660)
                      ++. +.....+... .-.....++++|++..|+.+.. .+.|..+++........+...          .-....+++. 
T Consensus       188 ~~d-G~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~giav~-  254 (349)
T 3v64_C          188 SMD-GSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITVF-  254 (349)
T ss_dssp             ETT-SCSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEEEE-
T ss_pred             eCC-CCCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEEEE-
Confidence            885 4433343221 2456789999988777776544 578999998754333332210          1123356663 


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          613 LEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       613 ~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                       ++..+++-...+.|..++..+|+
T Consensus       255 -~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          255 -EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTCC
T ss_pred             -CCEEEEecCCCCeEEEEEccCCC
Confidence             45566666677888888865554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.48  E-value=0.0003  Score=70.47  Aligned_cols=227  Identities=11%  Similarity=-0.017  Sum_probs=140.7

Q ss_pred             EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC---Cceee-EeeccCCCeEE
Q 006126          388 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT---KKTKA-KLKGHQNRITC  461 (660)
Q Consensus       388 ~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~---~~~~~-~~~~~~~~v~~  461 (660)
                      +|+.+....|+..|+.+.+....+. .......++|++.+  .+++....+.|..+++..   +.... .+...-.....
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            4566666789999998876555443 34556799999866  555666678999999876   12222 23222245678


Q ss_pred             EEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCC
Q 006126          462 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPT  537 (660)
Q Consensus       462 l~~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iwd~~~  537 (660)
                      +++++.+..| ++-...+.|.++|+.....      ..+.....   .....++++|.+..|+.+  .. +.|..+++. 
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~---~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-  151 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-  151 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCce------EEEEECCC---CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence            9998755544 4555678999999875321      11122111   367899999976666553  32 689888884 


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      |.....+... .-.....+++++++..|+.+. ..+.|..+|+............        ...-....+++.  .+.
T Consensus       152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~--------~~~~~P~giav~--~~~  220 (316)
T 1ijq_A          152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--EDK  220 (316)
T ss_dssp             SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEE--TTE
T ss_pred             CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC--------CccCCcEEEEEE--CCE
Confidence            5544444321 245678999999887777665 4578999999754332222210        011123356664  355


Q ss_pred             EEEEEeCCCeEEEEeCCCCc
Q 006126          617 RIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ++++....+.|..++..+++
T Consensus       221 ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCC
T ss_pred             EEEEECCCCeEEEEeCCCCc
Confidence            66666677889999886664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.43  E-value=0.00025  Score=73.25  Aligned_cols=227  Identities=11%  Similarity=0.002  Sum_probs=143.0

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      ..+|+.+....|+.+++.......... .......++|++.+  ++++-...+.|..+++..+.....+.........++
T Consensus        87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla  165 (386)
T 3v65_B           87 EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA  165 (386)
T ss_dssp             CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred             cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence            456666666788888887665544443 33457789999765  555666778999999886654443333334567788


Q ss_pred             EeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCCCc
Q 006126          464 YSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN  539 (660)
Q Consensus       464 ~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iwd~~~~~  539 (660)
                      +.+.+..| ++-...+.|.+.++.....      ..+.....   .....++++|.+..|+.+  .. +.|..+++. +.
T Consensus       166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~------~~l~~~~l---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~  235 (386)
T 3v65_B          166 VDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GS  235 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEECBTTSCSC------EEEECSSC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred             EEeCCCeEEEEcCCCCeEEEEeCCCCce------EEeecCCC---CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CC
Confidence            99855554 4445567888888875221      11122221   357899999977776664  34 679999885 44


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI  618 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l  618 (660)
                      ....+... .-.....++|+|++..|+.+. ..+.|..+++........+..      +    .-....+++.  ++.++
T Consensus       236 ~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~------~----~~~P~giav~--~~~ly  302 (386)
T 3v65_B          236 GRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G----LPHPFAITVF--EDSLY  302 (386)
T ss_dssp             SCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS------S----CSSEEEEEEE--TTEEE
T ss_pred             CcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC------C----CCCceEEEEE--CCEEE
Confidence            33343221 245578999998777776654 457899999875443333221      1    1123466663  45666


Q ss_pred             EEEeCCCeEEEEeCCCCc
Q 006126          619 ALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       619 ~s~s~Dg~v~iw~~~~~~  636 (660)
                      ++....+.|..++..+|+
T Consensus       303 ~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          303 WTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEETTTTEEEEEETTTCC
T ss_pred             EeeCCCCeEEEEECCCCc
Confidence            676677889888865554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.43  E-value=0.00031  Score=70.03  Aligned_cols=223  Identities=12%  Similarity=-0.029  Sum_probs=134.9

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      .....++|+++|+.+++-..++.|..|+......           ..|.              .......+++.  ++++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------~~~~--------------~~~~p~gia~~~dG~l~   86 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------IHAT--------------VEGKVSGLAFTSNGDLV   86 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------EEEE--------------CSSEEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------EEEe--------------CCCCceeEEEcCCCcEE
Confidence            5678999999999666655678887776543211           1111              12347788888  6654


Q ss_pred             EEEe-CC--cEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce-eeEee---------c
Q 006126          390 FSAS-GG--KISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK---------G  454 (660)
Q Consensus       390 ~s~~-dg--~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~---------~  454 (660)
                      ++.. .+  .|..+|..+++....... .......++..+++ .+++...++.|+++|..+++. +....         .
T Consensus        87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            4443 22  477778788776443322 22233455555666 555555688999999876421 11110         1


Q ss_pred             cCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEE
Q 006126          455 HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQID  531 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~  531 (660)
                      .-...+.+  +|+++.|+.+ +..+.|..||+.. +.......+   ...     .....++++++|++.++ ...+.|.
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~---~~~-----~~P~gi~vd~dG~l~va~~~~~~V~  236 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF---VEQ-----TNIDDFAFDVEGNLYGATHIYNSVV  236 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE---EES-----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE---ecc-----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence            11234555  7888766554 4568899999875 322111111   111     23557899999987666 3578899


Q ss_pred             EEeCCCCceee--eecCCCCCCCeEEEEEc---cCCCEEEEEecCC
Q 006126          532 VYEAPTLNHTS--QLVPDKMDLPITYATYS---CDGKCIYVSCKSG  572 (660)
Q Consensus       532 iwd~~~~~~~~--~~~~~~~~~~v~~~~~s---~dg~~l~sg~~dg  572 (660)
                      ++|.. ++...  .+..  .....++++|.   |+++.|+..+..+
T Consensus       237 ~~~~~-G~~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          237 RIAPD-RSTTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EECTT-CCEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EECCC-CCEEEEeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence            99974 65532  2322  13668999998   8988887766543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.40  E-value=0.00096  Score=66.73  Aligned_cols=203  Identities=7%  Similarity=-0.046  Sum_probs=126.5

Q ss_pred             CCCeEEEEEe--CCEEEEEe--CCcEEEEECCC---CeE-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC
Q 006126          376 KDSISCFALR--GSHLFSAS--GGKISIFSLET---FQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT  445 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~---~~~-~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~  445 (660)
                      ......++|+  ++.|+.+.  .+.|..+++..   +.. ...+.........+++.+.+  +.++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3457788998  56666666  58999999876   122 22233222345688898755  555656788999999875


Q ss_pred             CceeeEeeccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                      ......+.........++++|.+..|+.+...  +.|...++.....   ..   +.....   .....++++|++..|+
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~---~~~~~~---~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLY  179 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EE---EECSSC---SCEEEEEEETTTTEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EE---EEECCC---CCceEEEEeccCCEEE
Confidence            43333333344567899999976666655543  6888888865211   11   111111   4678999999887777


Q ss_pred             EE--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          524 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       524 ~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      .+  ..+.|..+|+. +.....+.. .........+++. .+..+++-...+.|..++..+|+....+.
T Consensus       180 ~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          180 WVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            64  56789999986 433333322 1123456788885 34455555567899999988877665554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.39  E-value=0.00022  Score=71.09  Aligned_cols=228  Identities=10%  Similarity=-0.004  Sum_probs=133.6

Q ss_pred             CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC-eEEEEeCCCCceee
Q 006126          377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS-SILVHCPCTKKTKA  450 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d~-~I~iwd~~~~~~~~  450 (660)
                      .....++|+  +.++++-. ++.|..||.... ....+. .......+++.++| ++++... ++ .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            456788898  55555544 789999998753 333333 23467889999999 5554433 33 57778877776543


Q ss_pred             Eeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec--ee-eee-eeeccCCCCCCeEEEEEecCCcEEEEE
Q 006126          451 KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI  525 (660)
Q Consensus       451 ~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~-~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~  525 (660)
                      .... .......++..+++..+++-..++.|..+|..++.....  .. +.. ...+..   ...+.+  +|+++.|+++
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv~  184 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYVS  184 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEEE
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEEE
Confidence            3221 223345555555555455544688999999876421100  00 000 000111   234455  8888887774


Q ss_pred             --ecCcEEEEeCCC-Cce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          526 --HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       526 --~d~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                        ..+.|..||+.. ++.  ...+..   ......++++++|++.++....+.|.+++.. ++........        .
T Consensus       185 d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~  252 (306)
T 2p4o_A          185 NTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------Q  252 (306)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------G
T ss_pred             eCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------c
Confidence              567899999864 332  112211   1345678999999887777777899999975 6543321111        1


Q ss_pred             cccceEEEEEe---cCCCCEEEEEeCC
Q 006126          601 LELYPLVIAAH---PLEPNRIALGLTN  624 (660)
Q Consensus       601 ~~v~~~~v~~s---p~d~~~l~s~s~D  624 (660)
                      ....+.+++|.   | ++..|..++..
T Consensus       253 ~~~~p~~~a~~g~~~-d~~~LyVt~~~  278 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEG-DCTAIYVVTNG  278 (306)
T ss_dssp             TCTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred             ccCCceEEEEecccC-CCCEEEEECCC
Confidence            11235589998   7 66666555543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.36  E-value=0.0014  Score=66.57  Aligned_cols=201  Identities=8%  Similarity=-0.035  Sum_probs=128.9

Q ss_pred             CCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceee
Q 006126          377 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      ..+..++|+  ++.|..+.  .+.|..+++..+.....+.........+++.+.+  ++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            347788988  56666665  6889999988665444443333445688898755  55666667899999987543333


Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEe-CC-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H  526 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~  526 (660)
                      .+...-.....++++|.+..|+... .. +.|..+++.....      ..+.....   .....++++|++..|+.+  .
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~---~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHL---FWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EESCCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCC---CCcceEEEeCCCCEEEEEECC
Confidence            3333445678999999666655544 34 7788888875221      10111111   357899999977777764  5


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      .+.|..+|+. +.....+... .......+++ ..+...++-...+.|..++..+|+....+.
T Consensus       224 ~~~I~~~~~d-G~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          224 HHVIERANLD-GSHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTEEEEEETT-SCSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCC-CCceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            6789999985 4333333221 2455678888 344455555567889999977776665554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.36  E-value=4e-05  Score=85.48  Aligned_cols=235  Identities=10%  Similarity=-0.010  Sum_probs=124.5

Q ss_pred             CeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCC-eEEEEe-CC-----CeEEEEeCCC
Q 006126          378 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGF-DD-----SSILVHCPCT  445 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~-~d-----~~I~iwd~~~  445 (660)
                      ...++++.  +..++.|+  ++.+.+||..+.+....-..+. ..-.+++..++| +++.|+ .+     ..+.+||..+
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            34445555  77778887  4689999998775443322121 122355666788 777777 44     4799999987


Q ss_pred             CceeeEe----eccCCCeEEEEEeCCCCEEEEEeCCC---------cEEEEEcCCCeeeeceeeeeeeecc--CCCCCCe
Q 006126          446 KKTKAKL----KGHQNRITCLAYSLSLNVLVSSGADA---------QLCVWDAVGWKKLCSKFLHSFQTGL--VPETTIV  510 (660)
Q Consensus       446 ~~~~~~~----~~~~~~v~~l~~sp~~~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v  510 (660)
                      ++-...-    ......-....+..++..++.++.+|         .+..||..+..-..  .......++  .+....-
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBTC
T ss_pred             CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCCC
Confidence            6533210    00000000011223455555555443         56788887743221  111011100  0000123


Q ss_pred             EEEEEec-CCcEEEEE-ecC-----------cEEEEeCCCCceeeeecCCCC-CCCeEEEEEccCCCEEEEEecC-----
Q 006126          511 NHIQFHP-DQIHLLSI-HEG-----------QIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKS-----  571 (660)
Q Consensus       511 ~~~~~sp-~~~~l~~~-~d~-----------~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~sg~~d-----  571 (660)
                      .++.|.. +++.+++| .++           .|.+||..+............ ...-.+++..|+|++++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            3455544 66666664 322           688889877665433201111 2223345667899999999864     


Q ss_pred             ------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          572 ------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       572 ------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                            ..+.+||..+.+-.. +.... .      ...+..+....| ++++++.||.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~-~~~~~-~------~R~~hs~a~ll~-dg~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYK-QNPNS-I------VRVYHSISLLLP-DGRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEE-CCCCS-S------CCCTTEEEEECT-TSCEEEEECC
T ss_pred             CCCCcccceEEEcCCCCceee-cCCCC-C------ccccccHhhcCC-CcEEEecCCC
Confidence                  468999998765332 21111 1      111111345568 8999999985

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.35  E-value=3.1e-05  Score=86.28  Aligned_cols=273  Identities=8%  Similarity=0.013  Sum_probs=148.4

Q ss_pred             eeeEecC-CCCEEEEEeCCC-----------cEEEEeccCcCCCcceeeee-cCCCCCCCCeEEEEEecCCCEEEEEEC-
Q 006126          266 RESTSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-  331 (660)
Q Consensus       266 ~~~~~sp-dg~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~~spdg~~l~s~s~-  331 (660)
                      ....+.| +|+.++.|+.+.           .+.+||..+    .....+. ++. .+.....++++.++|+.++.|+. 
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t----~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~~  263 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST----GIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGND  263 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT----CCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSSS
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC----CcEEeCcccCC-CCCCccccccCCCCCCEEEeCCCC
Confidence            3456777 899999987653           578899874    3322211 211 12333446788899999999985 


Q ss_pred             CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe--C-----CcEEEEECC
Q 006126          332 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLE  403 (660)
Q Consensus       332 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~--d-----g~I~iwd~~  403 (660)
                      +..+.+||..++.              |.....      +. .......++.+. ++.++.|+  +     ..+.+||..
T Consensus       264 ~~~v~~yd~~t~~--------------W~~~~~------~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          264 AKKTSLYDSSSDS--------------WIPGPD------MQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             TTCEEEEEGGGTE--------------EEECCC------CS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CCceEEecCcCCc--------------eeECCC------CC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            4578888776553              221110      00 111222334443 77777776  3     469999998


Q ss_pred             CCeEEEEE----cCCCCCeEEEEEcCCC-eEEEEeCC---------CeEEEEeCCCCceeeEeeccC---------CCeE
Q 006126          404 TFQTLATF----ANPPPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLKGHQ---------NRIT  460 (660)
Q Consensus       404 ~~~~~~~~----~~~~~~v~~v~~sp~~-~l~s~~~d---------~~I~iwd~~~~~~~~~~~~~~---------~~v~  460 (660)
                      +.+....-    ......-....+..++ .++.|+.+         ..+..||..+.........+.         ..-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            87644320    0000000011223445 44555444         356788888765443322221         1224


Q ss_pred             EEEEeC-CCCEEEEEeCCC-----------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126          461 CLAYSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE  527 (660)
Q Consensus       461 ~l~~sp-~~~~l~s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d  527 (660)
                      ++.|.. +++.+++|+.++           .+.+||..+..-.... ...+...     ..-.+++..|+++.+++ |.+
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBS
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcc
Confidence            444544 677888887532           5778887764311100 0001111     12335677789999988 433


Q ss_pred             -----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126          528 -----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       528 -----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                                 ..+.+||..+.+....-.............+.|||+.++.|+.
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                       4689999977654321111111222334556799999999985

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.34  E-value=0.00061  Score=65.27  Aligned_cols=218  Identities=11%  Similarity=0.016  Sum_probs=132.4

Q ss_pred             EEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126          410 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV  486 (660)
Q Consensus       410 ~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~  486 (660)
                      .+.+-...+..++|+|++  ++++...++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            445566679999999987  55667778899999988 888877642 22567889999988777766667889999887


Q ss_pred             CCeeeec-eeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeC-CCCceeeee-----cCCCCCCCeEEE
Q 006126          487 GWKKLCS-KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA-PTLNHTSQL-----VPDKMDLPITYA  556 (660)
Q Consensus       487 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~iwd~-~~~~~~~~~-----~~~~~~~~v~~~  556 (660)
                      ....+.. .... +..+..+.......++|+|.+..|+++ ...  .|+.|+- .....+..+     ....+...+.++
T Consensus       100 ~~~~i~~~~~~~-~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          100 PNSEVKILKKIK-IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TTCCEEEEEEEE-CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCeeeeeeeec-cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            6432111 1111 111101111467899999999777774 333  4555551 011111111     111124567899


Q ss_pred             EEccCCC-EEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          557 TYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       557 ~~s~dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +++|... +++.......|.++|.. |+.+..+...... .|-...--..-.|+|.| +|++.++ ++.+.++++...
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC-
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEec
Confidence            9998654 55556666889999976 5566666543100 00000001234899999 8886655 677767666554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=0.00066  Score=70.09  Aligned_cols=201  Identities=8%  Similarity=-0.045  Sum_probs=130.0

Q ss_pred             CCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceee
Q 006126          377 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      ..+..++|.  ++.|+.+.  .+.|..+++..+.....+.........+++.+.+  ++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            447788998  56666665  6889999998765444444333344678888755  55666667889999987544333


Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H  526 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~  526 (660)
                      .+.........++++|.+..|+.... . +.|..+++....      ...+.....   .....++++|++..|+.+  .
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSC---SCEEEEEEEGGGTEEEEEETT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCeeeEEEeCCCCEEEEEECC
Confidence            33334456789999997766665543 3 678888887521      111111111   357899999877777764  5


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      .+.|..+|+.. .....+... .......+++ ..+..+++-...+.|..++..+|+....+.
T Consensus       267 ~~~I~~~d~dG-~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          267 HHVIERANLDG-SHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEECTTS-CSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCC-CeeEEEEEC-CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            67899999853 333333221 2455678888 344555555567889999977777666665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.33  E-value=0.0011  Score=68.64  Aligned_cols=230  Identities=10%  Similarity=-0.022  Sum_probs=143.8

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC----ceeeEeeccCCCe
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI  459 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~----~~~~~~~~~~~~v  459 (660)
                      ..+|+.+....|+..++........+ .....+..++|++.+  ++++-...+.|+.+++...    .....+.......
T Consensus        83 ~~~ll~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           83 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             SCEEEEEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             cceeEEeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            34666666788999998866554444 344567799999866  5555566788999998752    2233333344567


Q ss_pred             EEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeC
Q 006126          460 TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEA  535 (660)
Q Consensus       460 ~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~  535 (660)
                      ..+++.+. +++.++-...+.|.+.++.....      ..+.....   .....+++.|.+.+|+.+   ..+.|...++
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~---~~P~~iavdp~~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSS---CCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCC---CCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence            88999984 44455555678899999876321      11122111   357899999976666654   2468999998


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      . |.....+... .-.....+++++++..|+.+.. .+.|..+|+........+...        ...-...+++..  .
T Consensus       233 d-G~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~l~~P~gl~v~--~  300 (400)
T 3p5b_L          233 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--E  300 (400)
T ss_dssp             T-SCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS--------STTSSEEEEEEE--T
T ss_pred             C-CCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC--------CCCCCCEEEEEe--C
Confidence            5 4443444221 2456889999998887777654 578999998765443333211        011123356653  3


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce
Q 006126          615 PNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +.++.+....+.|..++..+|+.
T Consensus       301 ~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          301 DKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             TEEEEEESSSCSEEEEESSSCCC
T ss_pred             CEEEEecCCCCeEEEEEcCCCCc
Confidence            45666666778888888766643

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.28  E-value=6.3e-05  Score=85.11  Aligned_cols=203  Identities=9%  Similarity=0.025  Sum_probs=105.6

Q ss_pred             EEEEcCCC-eEEEEeCC-----CeEEEEeCCCCce--eeEee-ccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCC
Q 006126          420 YFILLPQD-LFAFGFDD-----SSILVHCPCTKKT--KAKLK-GHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVG  487 (660)
Q Consensus       420 ~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~--~~~~~-~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~  487 (660)
                      .++|+||| .|+....|     ..|+++++.+++.  ...+. ........+.|+|||++|+..+.   ...|+++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            57899999 66655554     3688899887642  23333 23345678899999999887663   34688889887


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec----CcEEEEeCCCCceeee-ecCCCCCCCeEEEEEccC
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLNHTSQ-LVPDKMDLPITYATYSCD  561 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d----~~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~d  561 (660)
                      +...  ..+..+..+..   ....++.|+.++.+++.+ .+    ..|..+|+.++..... +........+..+.+. .
T Consensus       305 ~~~~--~~~~~l~~~~~---~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~  378 (751)
T 2xe4_A          305 GNAH--NTLEIVRPREK---GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-S  378 (751)
T ss_dssp             CTTC--CCEEESSCCCT---TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-S
T ss_pred             CCCC--ceeEEeecCCC---CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-C
Confidence            4210  00011222222   345556555444444445 32    2677788765322223 2222112234455554 2


Q ss_pred             CCEEEEEecCCe--EEEEEC-------CCCeeEEEeecccccCCCCcCcccceEEEEE----ecCCCCEEEEEeCC---C
Q 006126          562 GKCIYVSCKSGH--VKVFDT-------STLELRCQINLTAYAQPGTISLELYPLVIAA----HPLEPNRIALGLTN---G  625 (660)
Q Consensus       562 g~~l~sg~~dg~--I~iwd~-------~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~----sp~d~~~l~s~s~D---g  625 (660)
                      +.++++...++.  |+++++       .+++....+..         ....++..+.+    +++...++++.+..   +
T Consensus       379 ~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l---------~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~  449 (751)
T 2xe4_A          379 NYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVM---------EEPIFTVHLVESQMLEYEEPTFRMEYSSLATPN  449 (751)
T ss_dssp             SEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCC---------CCSSCEEEECGGGCCCTTCSCEEEEEEETTEEE
T ss_pred             CEEEEEEEeCCEEEEEEEecccccccccCCccceEECC---------CCceeEEEeccCcccCCCCCEEEEEEeCCCCCC
Confidence            344556666775  556665       34431233321         11122223332    34333455555443   4


Q ss_pred             eEEEEeCCCCce
Q 006126          626 RVHVIEPLESEV  637 (660)
Q Consensus       626 ~v~iw~~~~~~~  637 (660)
                      .+..+|+.+++.
T Consensus       450 ~~~~~d~~~~~~  461 (751)
T 2xe4_A          450 TWFDVSPQDHSR  461 (751)
T ss_dssp             EEEEECTTTCCE
T ss_pred             EEEEEECCCCcE
Confidence            677788776654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.26  E-value=0.0022  Score=66.38  Aligned_cols=204  Identities=8%  Similarity=-0.044  Sum_probs=130.1

Q ss_pred             CCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC
Q 006126          375 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~  444 (660)
                      ....+..++|+  ++.|..+.  .+.|..+++...    .....+.........+++.+.+  +.++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34567889998  66666666  688999998752    2333333344567789998854  55666677899999987


Q ss_pred             CCceeeEeeccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       445 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                      .......+.........++++|.+..|+....  .+.|...++.....      ..+.....   .....+++++++..|
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~~~~~~l---~~P~glavd~~~~~l  260 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRL  260 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EEEECSSC---SCEEEEEEETTTTEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EEEEECCC---CceEEEEEEeCCCEE
Confidence            65444444434456889999997666666553  37888888875221      11111211   367899999988877


Q ss_pred             EEE--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          523 LSI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       523 ~~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      +.+  ..+.|..+|+.. .....+.. .........+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus       261 Y~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            774  567899999854 33333322 1123445677773 33444455556889999988887666554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.24  E-value=0.00096  Score=63.90  Aligned_cols=199  Identities=16%  Similarity=0.121  Sum_probs=130.0

Q ss_pred             CCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126          374 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK  447 (660)
Q Consensus       374 ~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~  447 (660)
                      +-...+..++|+  ++.|++..  ++.|...|.. ++.++.+. ......-.+++.+++ ++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            445679999999  56666655  6889999998 88888875 223567788999888 66666677889999876543


Q ss_pred             e---eeEee------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee-------ccCCCCCCeE
Q 006126          448 T---KAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-------GLVPETTIVN  511 (660)
Q Consensus       448 ~---~~~~~------~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~v~  511 (660)
                      .   +....      ..+...-.++|+|.++.|+++.......+|.++. . .....+. +..       .+.   ..+.
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~-~~~~~l~-i~~~~~~~~~~~~---~d~S  176 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-L-LSSNELH-ISKDKALQRQFTL---DDVS  176 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-T-TCSSCCE-EEECHHHHHTCCS---SCCC
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-c-ccCCcee-eecchhhcccccc---CCce
Confidence            2   22221      1334568999999998877777665555555541 0 0001111 110       111   3578


Q ss_pred             EEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC--C-----CCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          512 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       512 ~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      +++++|....+++ + .++.+..+|. +++.+..+....  +     -.....++|+++|+ |+..++.+.+++|....
T Consensus       177 ~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~  253 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS  253 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred             eEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence            9999997666555 6 6678999997 466665554421  0     23678999999998 55557888888886543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.19  E-value=0.00095  Score=66.78  Aligned_cols=226  Identities=8%  Similarity=-0.046  Sum_probs=137.4

Q ss_pred             EEEEEeCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCcee-eEeeccCCCeEEE
Q 006126          388 HLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL  462 (660)
Q Consensus       388 ~l~s~~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~-~~~~~~~~~v~~l  462 (660)
                      +|+.+....|+.+++....  ....+. .......++|.+.+  ++.+-...+.|..+++..+... ..+...-.....+
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            4455556778888887653  111111 12245688999865  5566667789999998766322 2222223456788


Q ss_pred             EEeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCC
Q 006126          463 AYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL  538 (660)
Q Consensus       463 ~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~  538 (660)
                      ++.+.+.. .++-...+.|.++++.....      ..+.....   .....+++.|.+..|+.+   ..+.|...++. |
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G  154 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLR------KVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-G  154 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-S
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcE------EEEEeCCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-C
Confidence            99975544 45555678899999876221      11111222   467899999976666654   25789999884 4


Q ss_pred             ceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126          539 NHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR  617 (660)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~  617 (660)
                      .....+... .-.....+++++++..|+.+. ..+.|..+|+..........       +   ..-....+++..  +.+
T Consensus       155 ~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~l  221 (318)
T 3sov_A          155 SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DIL  221 (318)
T ss_dssp             CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEE
T ss_pred             CCeEEEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEE
Confidence            443343221 145678999999877777654 45889999987543332221       1   011233566644  355


Q ss_pred             EEEEeCCCeEEEEeCCCCce
Q 006126          618 IALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       618 l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +.+-...+.|..++..+|+.
T Consensus       222 ywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          222 YWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEETTTTEEEEEETTTCCS
T ss_pred             EEEecCCCeEEEEECCCCCc
Confidence            56666678899999877653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.13  E-value=0.00016  Score=81.80  Aligned_cols=194  Identities=11%  Similarity=0.045  Sum_probs=112.2

Q ss_pred             CeEEEEEc-CCC-eEEEEe-CCC----eEEEEeCCCC-ceee-EeeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEE
Q 006126          417 IATYFILL-PQD-LFAFGF-DDS----SILVHCPCTK-KTKA-KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCV  482 (660)
Q Consensus       417 ~v~~v~~s-p~~-~l~s~~-~d~----~I~iwd~~~~-~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~v  482 (660)
                      .+....|| ||| .|+.+. .+|    .|+++|+.++ +.+. .+.   .....+.|+|||+.|+....|     ..|+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            56788999 999 666443 333    5999999998 6332 121   113467899999988877765     25888


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCc-ee--eeecCCCCCCCeEE
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLN-HT--SQLVPDKMDLPITY  555 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~-~~--~~~~~~~~~~~v~~  555 (660)
                      +++.++...   ... +......  .....+.|+|||++|+. +   ....|+++|+.++. ..  ..+... ......+
T Consensus       252 ~~lgt~~~~---~~l-v~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s  324 (751)
T 2xe4_A          252 HVMGKLQSE---DVC-LYEEHNP--LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYD  324 (751)
T ss_dssp             EETTSCGGG---CEE-EEECCCT--TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEE
T ss_pred             EECCCCchh---cEE-EEecCCC--ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEE
Confidence            888774311   111 1121111  34668899999999987 3   23469999998752 22  333332 2455566


Q ss_pred             EEEccCCCEEE-EEecC----CeEEEEECCCC-eeEE-EeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEE
Q 006126          556 ATYSCDGKCIY-VSCKS----GHVKVFDTSTL-ELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH  628 (660)
Q Consensus       556 ~~~s~dg~~l~-sg~~d----g~I~iwd~~~~-~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~  628 (660)
                      +.|+. |+.|+ ....+    ..|..+++.++ +... .+. +        ...+.+..+.+.  .+.++++...||..+
T Consensus       325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~--------~~~~~l~~~~~~--~~~lv~~~~~~g~~~  392 (751)
T 2xe4_A          325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-H--------SEDVFMESIAVR--SNYLVVAGRRAGLTR  392 (751)
T ss_dssp             EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-C--------CSSEEEEEEEEC--SSEEEEEEEETTEEE
T ss_pred             Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-C--------CCCcEEEEEEEE--CCEEEEEEEeCCEEE
Confidence            66544 55444 44333    36777887653 2222 222 1        222232345443  345566777788655


Q ss_pred             --EEeC
Q 006126          629 --VIEP  632 (660)
Q Consensus       629 --iw~~  632 (660)
                        ++++
T Consensus       393 l~~~dl  398 (751)
T 2xe4_A          393 IWTMMA  398 (751)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence              4554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.12  E-value=0.0012  Score=69.30  Aligned_cols=246  Identities=11%  Similarity=-0.022  Sum_probs=145.9

Q ss_pred             CeEEEEEe-C---CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---C-eEEEEeCCCCc
Q 006126          378 SISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S-SILVHCPCTKK  447 (660)
Q Consensus       378 ~v~~v~~s-~---~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~-~I~iwd~~~~~  447 (660)
                      ....++|+ .   ..|..+. .+.|+.+|..++..... .........++++++| ++++....   . .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            45678887 3   6777776 58999999987776544 3445567899999999 55555422   1 23334432221


Q ss_pred             e-eeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE
Q 006126          448 T-KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  525 (660)
Q Consensus       448 ~-~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  525 (660)
                      . ...+. .......++++| +|.+.++-..++.|+.+|..++....  .+.  ..+..   .....++|+|+|++|+++
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~--~~~~~---~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--EEV--MMDTK---GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--EEE--ECSCC---SSCEEEEECTTSSEEEEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--EEe--ccCCC---CCcccEEEeCCCCEEEEE
Confidence            1 01121 223456788999 67766666667889999998654311  111  11111   234579999999977664


Q ss_pred             --ecCcEEEEeCC--CCce--eeeecCC-C------------CCCCeEEEEE---------ccCCCEEEEEecCCeEEEE
Q 006126          526 --HEGQIDVYEAP--TLNH--TSQLVPD-K------------MDLPITYATY---------SCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       526 --~d~~i~iwd~~--~~~~--~~~~~~~-~------------~~~~v~~~~~---------s~dg~~l~sg~~dg~I~iw  577 (660)
                        ..+.|+.++..  ++..  ...+.+. .            .-.....+++         .++|.+.++-..++.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              56789998865  2321  1122111 0            0234667999         7777777777777899999


Q ss_pred             ECCCCeeEEEeecccccCCCCcC-------cccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          578 DTSTLELRCQINLTAYAQPGTIS-------LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~gh~~-------~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +. +|......-.......|..+       .--+...++++|.++.++++-...+.|+.++++
T Consensus       371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            85 56544333210000001101       112356899995377777777777888888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.0023  Score=67.03  Aligned_cols=244  Identities=9%  Similarity=-0.028  Sum_probs=141.0

Q ss_pred             CeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-C----eEEEEeCCCCc
Q 006126          378 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-S----SILVHCPCTKK  447 (660)
Q Consensus       378 ~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-~----~I~iwd~~~~~  447 (660)
                      ....++++   +..|..+. .+.|+.+|+.++...... ........++|+++| .|+++... +    .+.+++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            34567776   25666666 588999999876654443 345567899999999 56666542 1    3444443 332


Q ss_pred             ee--eEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          448 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       448 ~~--~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      ..  ..+.. ......++++| +|.++++-..++.|..+|..++...   .+.  ..+..   .....++|+|+|++|++
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~--~~~~~---~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLF--TIQDS---GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEE--ECSSS---SCCEEEEECTTSSEEEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEE--EcCCC---CcceeEEEcCCCCEEEE
Confidence            22  22221 23456788999 7777766667889999999875421   111  11111   35778999999997666


Q ss_pred             E--ecCcEEEEeCCC--Cce--eeeecCC-C------------CCCCeE-EEEEc--------cCCCEEEEEecCCeEEE
Q 006126          525 I--HEGQIDVYEAPT--LNH--TSQLVPD-K------------MDLPIT-YATYS--------CDGKCIYVSCKSGHVKV  576 (660)
Q Consensus       525 ~--~d~~i~iwd~~~--~~~--~~~~~~~-~------------~~~~v~-~~~~s--------~dg~~l~sg~~dg~I~i  576 (660)
                      +  ..+.|..++...  +..  +..+.+. .            .-.... .++..        ++|.+.++-..++.|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  667899987642  221  1222111 0            011223 45553        34566666566788999


Q ss_pred             EECCCCeeEEEeecccccCCCCcCc-------ccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          577 FDTSTLELRCQINLTAYAQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~gh~~~-------~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ++ .+|+.............|..+.       --....+++.|+++.++++-...+.|+.++++
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            98 4565444332100000010000       11356899999446666666667788887764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.04  E-value=0.0022  Score=63.73  Aligned_cols=193  Identities=11%  Similarity=0.118  Sum_probs=123.8

Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC----CC-e--EEEEe--C--CCeEEEEeC--CCCceeeEe
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP----QD-L--FAFGF--D--DSSILVHCP--CTKKTKAKL  452 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp----~~-~--l~s~~--~--d~~I~iwd~--~~~~~~~~~  452 (660)
                      .+++... .+-+.+||+ +|+.++.+..  ..++.+..-|    .| .  ++.++  .  +++|.+|++  .+++ +..+
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence            3444444 788999999 8999888853  4566666555    23 1  33333  3  578999966  4443 4444


Q ss_pred             ec------cC-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEEcCC---CeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126          453 KG------HQ-NRITCLAY--SLS-LN-VLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD  518 (660)
Q Consensus       453 ~~------~~-~~v~~l~~--sp~-~~-~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  518 (660)
                      ..      .. ..+..+++  +|. ++ ++++...+|.+..|++..   +. ...+.+.++..+     +.+..+...+.
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg-----sq~EgcvvDd~  190 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN-----SQTEGMAADDE  190 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS-----SCEEEEEEETT
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC-----CCcceEEEcCC
Confidence            21      11 45666777  674 44 677888899999999842   21 223344433333     56888999998


Q ss_pred             CcEEEEE-ecCcEEEEeCC-----CCceeeeecCCCCCCCeEEEEE--ccCCC-EEEEEe-cCCeEEEEECC-CCeeEEE
Q 006126          519 QIHLLSI-HEGQIDVYEAP-----TLNHTSQLVPDKMDLPITYATY--SCDGK-CIYVSC-KSGHVKVFDTS-TLELRCQ  587 (660)
Q Consensus       519 ~~~l~~~-~d~~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~dg~-~l~sg~-~dg~I~iwd~~-~~~~~~~  587 (660)
                      ...|+++ .+..|..+|.+     +++.+..+....-...+..+++  .++++ +|++++ .++...+||.. +.+.+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            8888887 55567777755     3445555433222357888888  45666 666666 56799999997 7777777


Q ss_pred             ee
Q 006126          588 IN  589 (660)
Q Consensus       588 ~~  589 (660)
                      +.
T Consensus       271 f~  272 (355)
T 3amr_A          271 FR  272 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.00  E-value=0.045  Score=64.34  Aligned_cols=328  Identities=10%  Similarity=-0.011  Sum_probs=179.1

Q ss_pred             CCEEEEEeC-CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEeccCC--ceeee
Q 006126          274 ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLWKWQSN--KQSLE  348 (660)
Q Consensus       274 g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s--pdg~~l~s~s~dg~i~vw~~~~~--~~~~~  348 (660)
                      +++++.|.. |++++|+++.+   -..+....++.   .....++.+.  ....+|..|-.||.+.-+.++..  .....
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~  644 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR  644 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc
Confidence            479999997 99999999974   23333333432   2233444433  23468889999998876665532  21100


Q ss_pred             ----eeccceeEEEecCCC------------------CceeeecccCCCCCCe-EEEEEe----CCEEEEEeCCcEEEEE
Q 006126          349 ----EENVNMESQLYQPSS------------------KLVMTNDIAADPKDSI-SCFALR----GSHLFSASGGKISIFS  401 (660)
Q Consensus       349 ----~~~~~~~~~~~~~~~------------------~~~~~~~~~~~h~~~v-~~v~~s----~~~l~s~~dg~I~iwd  401 (660)
                          ..+.......+....                  +.+.-.-.   ....+ ....|+    .+-++..+++.++|..
T Consensus       645 r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~  721 (1158)
T 3ei3_A          645 KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTIGT  721 (1158)
T ss_dssp             EEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEEEE
T ss_pred             eeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEEEE
Confidence                111111111111111                  11110000   01112 233454    3456655566788887


Q ss_pred             CCCCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEeC--------------------------------------------
Q 006126          402 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFD--------------------------------------------  434 (660)
Q Consensus       402 ~~~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~~--------------------------------------------  434 (660)
                      +.+..  .++++. -...+..++++|+. .++.+..                                            
T Consensus       722 i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1158)
T 3ei3_A          722 IDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF  800 (1158)
T ss_dssp             ECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred             ecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence            75432  223332 23566778888876 3332221                                            


Q ss_pred             -----CCeEEEEeCCCCceeeEeec-cCCCeEEEEE---eC-CCCEEEEEe----------CCCcEEEEEcCCCeeeece
Q 006126          435 -----DSSILVHCPCTKKTKAKLKG-HQNRITCLAY---SL-SLNVLVSSG----------ADAQLCVWDAVGWKKLCSK  494 (660)
Q Consensus       435 -----d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~---sp-~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~  494 (660)
                           -+.|++.|..+.+.+..+.- ....+.+++.   .. ...++++|+          ..|.|.+|++..++.   .
T Consensus       801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL---~  877 (1158)
T 3ei3_A          801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL---Q  877 (1158)
T ss_dssp             CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE---E
T ss_pred             CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE---E
Confidence                 12477788777776655543 2234455443   22 246888876          347899999874321   1


Q ss_pred             eeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                      .+.  .....   +.+++++--. | +|+++..+.|++|++...+.++ .... +-..|..+.....+++++.|..-..|
T Consensus       878 lv~--~~~v~---g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv  948 (1158)
T 3ei3_A          878 TVA--EKEVK---GAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGDFILVGDLMRSV  948 (1158)
T ss_dssp             EEE--EEEES---SCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETTEEEEEESSBCE
T ss_pred             EEE--EEEcC---CcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCCEEEEEEhhheE
Confidence            122  11112   6788877553 4 6777778899999997655443 2111 11123333343457899998876666


Q ss_pred             EE--EECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          575 KV--FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       575 ~i--wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      .+  |+...+++...-..         ..+.+++++.|-. + ..++.+..+|.+.+.....
T Consensus       949 ~~~~y~~~~~~L~~~a~D---------~~~~~vta~~~ld-~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          949 LLLAYKPMEGNFEEIARD---------FNPNWMSAVEILD-D-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEETTTTEEEEEEEC---------CSCBCEEEEEEEE-T-TEEEEEETTSEEEEEEECT
T ss_pred             EEEEEEcCCCeEEEEEee---------cccccEEEEEEEc-c-CcEEEEcCCCcEEEEecCC
Confidence            66  45555554433221         3345667888865 3 4778889999999987754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.98  E-value=0.014  Score=65.71  Aligned_cols=202  Identities=7%  Similarity=-0.060  Sum_probs=125.6

Q ss_pred             CCCeEEEEEe--CCEEEEEe--CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC
Q 006126          376 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT  445 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~  445 (660)
                      ...+..++|.  +..|+.+.  .+.|+.+++...    .....+.........+++.+.+  ++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            4557788888  56666665  578998988752    2233333344455688998877  555666778999999875


Q ss_pred             CceeeEeeccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126          446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                      ......+.........|+++|.+..|+.... . +.|...++.....      ..+.....   .....|++++.+..|+
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------~~lv~~~l---~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEEECSSC---SCEEEEEEETTTTEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------EEEEeCCC---CCceEEEEecCCCeEE
Confidence            4433333334456889999997666666553 2 6788888875221      11222222   4688999998777777


Q ss_pred             EE--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEee
Q 006126          524 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       524 ~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      .+  ..+.|..+|+. |.....+.. ...-.....+++.  +..|+.. ...+.|...|..+|+.+..+.
T Consensus       574 waD~~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          574 WVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEeCCCCcEEEEecC-CCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            64  55789999985 443333322 1112345566663  4455544 445889888887776555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.94  E-value=0.022  Score=57.07  Aligned_cols=271  Identities=8%  Similarity=-0.027  Sum_probs=140.1

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|.+++..++ ++.+|.|. ....++   .......++.......+.++.|.+ +. ++.++.++.|.. ..+.++   
T Consensus        41 v~~~~~~~~~~-~G~~g~i~-~s~DgG---~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~---  109 (327)
T 2xbg_A           41 MSFIDRHHGWL-VGVNATLM-ETRDGG---QTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ---  109 (327)
T ss_dssp             EEESSSSCEEE-EETTTEEE-EESSTT---SSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS---
T ss_pred             EEECCCCcEEE-EcCCCeEE-EeCCCC---CCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC---
Confidence            46666666666 44566542 222221   122222121111245789999986 44 444555664432 111121   


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEE-EcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLAT-FANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~s  424 (660)
                                .|.....       ...+...+..+.+.  +..++.+.+|.|.. ..+.|+.-.. .......+..+.+.
T Consensus       110 ----------tW~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~  171 (327)
T 2xbg_A          110 ----------SWSQIPL-------DPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS  171 (327)
T ss_dssp             ----------SCEECCC-------CTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC
T ss_pred             ----------CceECcc-------ccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEc
Confidence                      1221100       00123446777776  44444444665432 2222332222 23455678899999


Q ss_pred             CCC-eEEEEeCCCeEE-EEeC--CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126          425 PQD-LFAFGFDDSSIL-VHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~-iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      +++ .++.+. ++.+. -.|-  .+.+.+.  ......+..+.+.+++..++ ++.+|.+++.+...+..-  ..+. ..
T Consensus       172 ~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW--~~~~-~~  244 (327)
T 2xbg_A          172 PSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENW--GELL-SP  244 (327)
T ss_dssp             TTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEE--CCCB-CT
T ss_pred             CCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCee--Eecc-CC
Confidence            988 665554 44444 3442  2222221  23456788999999887654 556788777643322210  1111 00


Q ss_pred             -eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          501 -TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       501 -~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                       ....   ..+.++.+.+++..++++.++.| .+....++.-..+... .....+.++.|.+++. +++++.+|.|.-++
T Consensus       245 ~~~~~---~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          245 LRRNS---VGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             TSSCC---SCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             cccCC---cceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence             0111   35888999998888888888877 3444445443333211 1235678888876554 55666788877665


Q ss_pred             C
Q 006126          579 T  579 (660)
Q Consensus       579 ~  579 (660)
                      -
T Consensus       320 ~  320 (327)
T 2xbg_A          320 T  320 (327)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.93  E-value=0.0099  Score=66.84  Aligned_cols=229  Identities=10%  Similarity=-0.036  Sum_probs=141.4

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC----ceeeEeeccCCCe
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI  459 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~----~~~~~~~~~~~~v  459 (660)
                      ..+|+.+....|+..++.......... ....+..++|.+.+  ++++-...+.|+.+++...    .....+.......
T Consensus       395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            345666666778888887655444333 34566789999855  5556666788999998753    2233333344567


Q ss_pred             EEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e-cCcEEEEeC
Q 006126          460 TCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEA  535 (660)
Q Consensus       460 ~~l~~sp~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~-d~~i~iwd~  535 (660)
                      ..|++.+.+..|+ +-...+.|.+.++....      ...+.....   .....|++.|.+.+|+.+  . .+.|.+.++
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------~~~l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSS------EEEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCe------EEEEEeCCC---CCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence            7899998775555 44557889999997632      111222222   357899999986666653  2 367999998


Q ss_pred             CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      . |.....+... .-.....|++++.+..|+.+.. .+.|..+++........+...        ...-+..+++...  
T Consensus       545 d-G~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~--------~~l~~P~glav~~--  612 (791)
T 3m0c_C          545 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE--  612 (791)
T ss_dssp             T-SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--
T ss_pred             C-CCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC--------CccCCCCEEEEeC--
Confidence            5 5544444332 2467889999988777776644 578999998765444443311        1111233566543  


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc
Q 006126          615 PNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      +.++++-...+.|...+..+|+
T Consensus       613 ~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          613 DKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEECCCCEEEEEeCCCCc
Confidence            3455555566788888766664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.92  E-value=0.009  Score=59.57  Aligned_cols=199  Identities=8%  Similarity=-0.072  Sum_probs=125.5

Q ss_pred             eEEEEEe--CCEEEEEe--CCcEEEEECCCCeEE-EEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE
Q 006126          379 ISCFALR--GSHLFSAS--GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK  451 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~-~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~  451 (660)
                      ...++|.  ++.|..+.  .+.|..+++..+... ..+.........+++.+.+  ++++-...+.|.++++........
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  116 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL  116 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE
Confidence            5577787  55666555  688999998765321 1222222345578888755  556666778999999875433333


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec
Q 006126          452 LKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE  527 (660)
Q Consensus       452 ~~~~~~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d  527 (660)
                      +.........++++|.+..|+.+..  .+.|...++.....   ..   +....-   ...+.++++|++..|+.+  ..
T Consensus       117 ~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~---~~~~~l---~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          117 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FI---IINSEI---YWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EE---EECSSC---SCEEEEEEETTTTEEEEEETTT
T ss_pred             EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EE---EEECCC---CCccEEEEeccCCEEEEEECCC
Confidence            3344456789999997666666553  57888888865211   11   111111   357899999977777764  56


Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      +.|..+|+. +.....+... .......+++.. +..+.+-...+.|..++..+|+....+.
T Consensus       188 ~~I~~~d~d-G~~~~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          188 NFIHKSNLD-GTNRQAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TEEEEEETT-SCSCEEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEcCC-CCceEEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            789999985 4333333321 245567788753 3444455556899999998887666554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.90  E-value=0.0023  Score=66.96  Aligned_cols=241  Identities=10%  Similarity=0.020  Sum_probs=130.5

Q ss_pred             CCeEEEEEecC--CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          312 GRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       312 ~~V~~~~~spd--g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      .....++|+|+  +..|..+...+.|+.++..++.                     .....   ........++++  ++
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---------------------v~~~~---~~~~~P~giavd~dG~  194 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---------------------VDIKT---TNIGQCADVNFTLNGD  194 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE---------------------EEEEC---CCCSCEEEEEECTTCC
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE---------------------EEEee---cCCCCccEEEECCCCC
Confidence            45678899984  3445555444666666554332                     22211   233457889998  66


Q ss_pred             EEEEEe-CC-----cEEEEECCCCeE-EEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEe-ec-cC
Q 006126          388 HLFSAS-GG-----KISIFSLETFQT-LATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-KG-HQ  456 (660)
Q Consensus       388 ~l~s~~-dg-----~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~-~~-~~  456 (660)
                       |+.+. .+     .+...+...+.. ...+. .......++++| +| ++++-..++.|+.+|..++.....+ .. ..
T Consensus       195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             -EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             -EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence             44444 22     133333222111 01111 123345678999 56 5555556788999999877663333 21 12


Q ss_pred             CCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC--Ceeeeceeeeee--eeccCC------CCCCeEEEEE---------e
Q 006126          457 NRITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSF--QTGLVP------ETTIVNHIQF---------H  516 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~--~~~~~~~~~~~~--~~~~~~------~~~~v~~~~~---------s  516 (660)
                      ..-..++|+|+|++|+.+ ...+.|+.++...  +.......+...  ..+...      .-.....+++         .
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            233479999999955544 4568899988753  211000000000  000000      0024667999         6


Q ss_pred             cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC----------------CCCeEEEEEc-cCCCEEEEEecCCeEEEEE
Q 006126          517 PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------------DLPITYATYS-CDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       517 p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd  578 (660)
                      ++|.+.++ ...+.|+.++. ++.. .++.+...                -.....++++ ++|.++++=..++.|+.++
T Consensus       353 ~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          353 DEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             CCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            77766666 46678999985 5643 33332110                1236788998 5666665555667888777


Q ss_pred             CC
Q 006126          579 TS  580 (660)
Q Consensus       579 ~~  580 (660)
                      ++
T Consensus       431 ~e  432 (433)
T 4hw6_A          431 PE  432 (433)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.004  Score=65.14  Aligned_cols=241  Identities=7%  Similarity=-0.030  Sum_probs=130.9

Q ss_pred             CCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126          312 GRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH  388 (660)
Q Consensus       312 ~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~  388 (660)
                      .....++++| ++..|..+...+.|..++......                     ....   ........++|+  +++
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v---------------------~~~~---~~~~~P~~ia~d~~G~~  192 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV---------------------STVY---SGLSKVRTICWTHEADS  192 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE---------------------EEEE---CCCSCEEEEEECTTSSE
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE---------------------EEEe---cCCCCcceEEEeCCCCE
Confidence            3567889998 455566665555666555544322                     1111   133457788998  775


Q ss_pred             EEEEe--CC----cEEEEECCCCeEE--EEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCC
Q 006126          389 LFSAS--GG----KISIFSLETFQTL--ATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQN  457 (660)
Q Consensus       389 l~s~~--dg----~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~  457 (660)
                      |+.+.  ++    .+..++. .+...  ..+.. ......++++| +| ++++-..++.|..++..++........ ...
T Consensus       193 lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          193 MIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            66655  22    2333443 23221  22221 22345778999 56 566666778999999887654222221 224


Q ss_pred             CeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC--Ceeeeceeeeee--eeccCC------CCCCeE-EEEEe--------c
Q 006126          458 RITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSKFLHSF--QTGLVP------ETTIVN-HIQFH--------P  517 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~--~~~~~~~~~~~~--~~~~~~------~~~~v~-~~~~s--------p  517 (660)
                      ....++|+|+|++|+. -...+.|..++...  +.......+...  ..+...      .-.... .++..        +
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            5678999999995544 45678899988763  211000000000  000000      001233 45553        3


Q ss_pred             CCcEEEE-EecCcEEEEeCCCCceeeeecCCC----------------CCCCeEEEEEccC-CCEEEEEecCCeEEEEEC
Q 006126          518 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       518 ~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~  579 (660)
                      +|.+.++ ...+.|+.++. ++... ++.+..                .-.....++++|+ +.++++-..++.|+.+++
T Consensus       351 ~g~lyvaD~~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          351 EYDFYFCDRENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             CEEEEEEEGGGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCeEEEEECCCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            4555555 36678999984 56433 322210                0125788999995 555555555678888775


Q ss_pred             C
Q 006126          580 S  580 (660)
Q Consensus       580 ~  580 (660)
                      +
T Consensus       429 e  429 (430)
T 3tc9_A          429 E  429 (430)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.85  E-value=0.0047  Score=61.42  Aligned_cols=186  Identities=6%  Similarity=0.021  Sum_probs=115.9

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC----CCE--E-EEEe-C--CCcEEEEEcC--CCeeeecee
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LNV--L-VSSG-A--DAQLCVWDAV--GWKKLCSKF  495 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~--l-~s~s-~--dg~i~vwd~~--~~~~~~~~~  495 (660)
                      .++.....+-+.+||+ +|+.++.+..  +.++.+..-|+    |+.  + ++.. .  +++|.+|++.  ++..   ..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l---~~  115 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL---QS  115 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE---EE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce---ee
Confidence            5666667789999999 7888888864  56777776652    322  2 3333 3  5789999774  3221   11


Q ss_pred             eeee--eeccCCCCCCeEEEEE--ecC-Cc-EEEE-EecCcEEEEeCC-------CCceeeeecCCCCCCCeEEEEEccC
Q 006126          496 LHSF--QTGLVPETTIVNHIQF--HPD-QI-HLLS-IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       496 ~~~~--~~~~~~~~~~v~~~~~--sp~-~~-~l~~-~~d~~i~iwd~~-------~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      +...  ..+...  ..+..+++  +|. ++ ++++ ..+|.+..|++.       +.+.++++..   ...+..+...+.
T Consensus       116 i~~~~~pv~t~~--~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~  190 (355)
T 3amr_A          116 MTDPDHPIATAI--NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE  190 (355)
T ss_dssp             CSCTTSCEECCC--SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred             ccccccCcCCCC--CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence            1000  100000  24566777  674 54 4555 478999998882       3456777765   567889999999


Q ss_pred             CCEEEEEecCCeEEEEECC-----CCeeEEEeecccccCCCCcCcccceEEEEE--ecCCCC-EEEEEe-CCCeEEEEeC
Q 006126          562 GKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLELYPLVIAA--HPLEPN-RIALGL-TNGRVHVIEP  632 (660)
Q Consensus       562 g~~l~sg~~dg~I~iwd~~-----~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~--sp~d~~-~l~s~s-~Dg~v~iw~~  632 (660)
                      ...|+.+-++.-|..++.+     +++.+..+..      ++-...+.  .++.  .+ ++. +|++++ .+.+..+||.
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvE--GLai~~~~-~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIE--GLTIYYAA-DGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEE--EEEEEECG-GGCEEEEEEEGGGTEEEEEES
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcc--eEEEEecC-CCCEEEEEEcCCCCEEEEEEC
Confidence            9999999999777777755     3444444321      22223344  5555  55 455 555555 6789999999


Q ss_pred             C
Q 006126          633 L  633 (660)
Q Consensus       633 ~  633 (660)
                      .
T Consensus       262 ~  262 (355)
T 3amr_A          262 Q  262 (355)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.77  E-value=0.037  Score=60.63  Aligned_cols=225  Identities=11%  Similarity=-0.010  Sum_probs=142.5

Q ss_pred             CEEEEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          387 SHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       387 ~~l~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      .+|+.+..+.|+..++.+......+. ..-.....++|++.+  .+++-..++.|..+++........+.........++
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            35566667889999998755433332 223457799999976  555666788999999875544333333334577899


Q ss_pred             EeCCCCEEE-EEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCc
Q 006126          464 YSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLN  539 (660)
Q Consensus       464 ~sp~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~~  539 (660)
                      +.+.+..|+ +-...+.|.+.++.....      ..+.....   .....+++.|....|+.+   ..+.|...++. |.
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~------~~l~~~~l---~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~  156 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHR------QVLVWKDL---DSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GS  156 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTC------EEEECSSC---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcE------EEEEeCCC---CCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CC
Confidence            987655554 444567899999876321      11111111   357899999965555553   25688888884 44


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI  618 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l  618 (660)
                      ....+..  .-.....++++++++.|+.+.. .+.|..+|+..... ..+...     .  .+   ..++++..  +.++
T Consensus       157 ~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----l--~~---P~glav~~--~~ly  221 (628)
T 4a0p_A          157 ERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----L--PH---PFGLTQYQ--DYIY  221 (628)
T ss_dssp             SCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----C--SC---EEEEEEET--TEEE
T ss_pred             ceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----C--CC---ceEEEEEC--CEEE
Confidence            3344332  2567889999998877776654 57899999976544 333210     0  11   33666654  3555


Q ss_pred             EEEeCCCeEEEEeCCCCc
Q 006126          619 ALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       619 ~s~s~Dg~v~iw~~~~~~  636 (660)
                      ++-...+.|...|..+++
T Consensus       222 ~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          222 WTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEETTTTEEEEEETTTCC
T ss_pred             EecCCCCEEEEEECCCCC
Confidence            565567888888877665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.72  E-value=0.00021  Score=79.82  Aligned_cols=202  Identities=8%  Similarity=-0.046  Sum_probs=118.6

Q ss_pred             CCeEEEEEe--CCEEEEEe--CCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC
Q 006126          377 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK  446 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~  446 (660)
                      ..+..++|.  ++.|+.+.  .+.|..+++..    ......+.........+++.+.+  ++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            345677887  56666665  57899999875    22222221122234467887554  5555556788999998754


Q ss_pred             ceeeEeeccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      .....+.........++++|.+.+|+.+.. . +.|..+++.....   ..   +.....   .....|+|+|++..|+.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~---l~~~~l---~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CE---ESCSSC---SSCCCEEECTTTCCEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eE---EEeCCC---CCccEEEEeccCCEEEE
Confidence            433333323345678899996665555443 2 6788887764211   11   111111   35668999998776666


Q ss_pred             E--ecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126          525 I--HEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       525 ~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      +  ..+.|.++|+.. .....+... ........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus       557 aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          557 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            4  567899999853 333333221 11233445666543 344444556899999999888777664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.64  E-value=0.032  Score=58.61  Aligned_cols=254  Identities=9%  Similarity=-0.078  Sum_probs=145.9

Q ss_pred             CeEEEEEe---CCEEEEEe--CCcEEEEECCCCeEEEEEcCC---CCCeEEEEE-------cCCC-eEEEEeCCC-----
Q 006126          378 SISCFALR---GSHLFSAS--GGKISIFSLETFQTLATFANP---PPIATYFIL-------LPQD-LFAFGFDDS-----  436 (660)
Q Consensus       378 ~v~~v~~s---~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~---~~~v~~v~~-------sp~~-~l~s~~~d~-----  436 (660)
                      ....|+|+   +..|+.+.  .+.|++.|+.++.........   ......++|       ++++ .++++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            45678887   24555555  367999999887776555432   235789999       9999 666665543     


Q ss_pred             --eEEEEeCCC-Ccee-----eEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcC-------CCeee-e--ce---
Q 006126          437 --SILVHCPCT-KKTK-----AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAV-------GWKKL-C--SK---  494 (660)
Q Consensus       437 --~I~iwd~~~-~~~~-----~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~-------~~~~~-~--~~---  494 (660)
                        .|.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..- .  ..   
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              366776443 2221     222221 23456788994 5555566677889999997       54320 0  00   


Q ss_pred             eeeeee-eccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeC--CCCce--eeeecCC----C---------CCCCeE
Q 006126          495 FLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTLNH--TSQLVPD----K---------MDLPIT  554 (660)
Q Consensus       495 ~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~--~~~~~--~~~~~~~----~---------~~~~v~  554 (660)
                      ....+. .+..   .....++|+|+|++|+++  ....|+.+|.  .++..  ..++.+.    .         .-....
T Consensus       299 ~~~~l~~~~~~---~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          299 TFKQLFTIADP---SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             TEEEEEECSSS---SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             ccceeEecCCC---CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence            001111 1111   456799999999976664  5678888664  33321  0122111    0         012234


Q ss_pred             -EEEEc-------cCCCEEEEEecCCeEEEEECCCCeeEEEeecccc-------cCCCCcCc-------ccceEEEEEec
Q 006126          555 -YATYS-------CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY-------AQPGTISL-------ELYPLVIAAHP  612 (660)
Q Consensus       555 -~~~~s-------~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-------~~~gh~~~-------~v~~~~v~~sp  612 (660)
                       .++..       ++|.+.++=..++.|+.++ .+|.. ..+.....       ...|..+.       --....+++.+
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence             45554       4566666666788999999 45643 33332100       00011111       12356899999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          613 LEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       613 ~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +++.+.++-.....||.+++....+
T Consensus       454 ~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcc
Confidence            3377777777788999999876544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.64  E-value=0.028  Score=59.06  Aligned_cols=250  Identities=8%  Similarity=-0.075  Sum_probs=134.1

Q ss_pred             CeEEEEEec-CCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccC-CCCCCeEEEEE-----
Q 006126          313 RVVRLIYSH-SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFAL-----  384 (660)
Q Consensus       313 ~V~~~~~sp-dg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~-----  384 (660)
                      ....|+|+| ++..|+.+.. .+.|++.|.+.+..                     ....... ........++|     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v---------------------~~l~~~~~~~~~~p~~ia~~~~~~  198 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML---------------------SSPLNINTIPTNRIRSIAFNKKIE  198 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE---------------------EEEECCTTSSCSBEEEEEECCCBT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE---------------------EEEEccCccccCCCcEEEEeeccc
Confidence            577899998 3444444443 35555555444332                     2111000 12235788999     


Q ss_pred             --e--CCEEEEEe-CC-c------EEEEECCC-CeEE-----EEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC
Q 006126          385 --R--GSHLFSAS-GG-K------ISIFSLET-FQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       385 --s--~~~l~s~~-dg-~------I~iwd~~~-~~~~-----~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~  444 (660)
                        +  +++|+.+. .+ .      |.+++... +...     +.+... .....++++|++  ++++-..++.|..+|+.
T Consensus       199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence              7  77677776 32 2      66665443 2221     122211 123467889955  56666678889999987


Q ss_pred             -------CCce-----------eeE-ee-ccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC--Ceeeeceeeeee--
Q 006126          445 -------TKKT-----------KAK-LK-GHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSKFLHSF--  499 (660)
Q Consensus       445 -------~~~~-----------~~~-~~-~~~~~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~--~~~~~~~~~~~~--  499 (660)
                             ++..           ... +. +.......++|+|+|+.|.. -+....|+.+|...  +.......+.-.  
T Consensus       278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g  357 (496)
T 3kya_A          278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK  357 (496)
T ss_dssp             HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT
T ss_pred             cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC
Confidence                   5543           112 21 12345678999999996444 45667898866543  211000000000  


Q ss_pred             eeccCC------CCCCeE-EEEEe-------cCCcEEEE-EecCcEEEEeCCCCceeeeecCCC----------------
Q 006126          500 QTGLVP------ETTIVN-HIQFH-------PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------------  548 (660)
Q Consensus       500 ~~~~~~------~~~~v~-~~~~s-------p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------------  548 (660)
                      ..+...      .-.... .++..       ++|.++++ ..+..|+.++. +|. +.++.+..                
T Consensus       358 ~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG  435 (496)
T 3kya_A          358 QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDG  435 (496)
T ss_dssp             BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCE
T ss_pred             CCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCC
Confidence            001000      001234 34554       45666665 47789999994 563 44443320                


Q ss_pred             ------CCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCeeEE
Q 006126          549 ------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRC  586 (660)
Q Consensus       549 ------~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~~~~~~~~  586 (660)
                            .-.....++++++ |.+.++=..++.|+.+++.......
T Consensus       436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence                  0134667888886 6655555566788888887654443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.63  E-value=0.0022  Score=63.29  Aligned_cols=160  Identities=13%  Similarity=0.014  Sum_probs=106.1

Q ss_pred             EEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeEeecc-------CCCeEEEEE---eCCCCEEEEEe-----------
Q 006126          419 TYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH-------QNRITCLAY---SLSLNVLVSSG-----------  475 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~---sp~~~~l~s~s-----------  475 (660)
                      -++.|++.. .+..++ ..++|..||...+.........       ...+..+.|   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            478898866 666665 7899999999766443332211       114579999   68877777543           


Q ss_pred             --CCCcEEEEEcC---CCeeeeceeeeeeeec------cCCCCCCeEEEEEecCCcEEEE-Eec-CcEEEEeCCCCceee
Q 006126          476 --ADAQLCVWDAV---GWKKLCSKFLHSFQTG------LVPETTIVNHIQFHPDQIHLLS-IHE-GQIDVYEAPTLNHTS  542 (660)
Q Consensus       476 --~dg~i~vwd~~---~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~~-~~d-~~i~iwd~~~~~~~~  542 (660)
                        .+..+..||+.   +++......+.....+      ...  .....++..++|+..++ +.. +.|..++.. ++.+.
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~  172 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVS  172 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEe
Confidence              26779999999   7654433332211111      010  24789999999998887 566 778888774 44333


Q ss_pred             eecC----CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          543 QLVP----DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       543 ~~~~----~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      .+..    .......+.++++|+|+.|++...+|.+..+|+.+
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            3211    11133467999999999988887799999999884

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.57  E-value=0.00028  Score=78.75  Aligned_cols=228  Identities=11%  Similarity=-0.019  Sum_probs=129.4

Q ss_pred             EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCC----CceeeEeeccCCCeEE
Q 006126          388 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCT----KKTKAKLKGHQNRITC  461 (660)
Q Consensus       388 ~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~----~~~~~~~~~~~~~v~~  461 (660)
                      +|+.+..+.|+..++.+......+.. ...+..++|.+.+ .| ++-...+.|+.+++..    ......+.........
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  457 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred             eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence            34444456788888877655443332 2345678999866 44 4445567899999875    2222222212223556


Q ss_pred             EEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e-cCcEEEEeCCC
Q 006126          462 LAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAPT  537 (660)
Q Consensus       462 l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~-d~~i~iwd~~~  537 (660)
                      +++.+.+ +++++-...+.|.++++.....      ..+.....   .....++++|.+.+|+.+  . .+.|.++++. 
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-  527 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-  527 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCce------EEEEeCCC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCC-
Confidence            7887544 4444445578899999876321      11111111   245678999976666553  2 3688888874 


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      +.....+... .-.....++|+|++..|+.+ +..+.|..+++........+...     +   ...+...+++..  +.
T Consensus       528 G~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~---~~~~P~glavd~--~~  596 (699)
T 1n7d_A          528 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----K---RLAHPFSLAVFE--DK  596 (699)
T ss_dssp             SCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-----S---SCSSCCCCEEET--TE
T ss_pred             CCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-----C---cCCCceEeEEEC--CE
Confidence            3333333221 13456689999986666554 45678999998754433332211     0   001122455544  34


Q ss_pred             EEEEEeCCCeEEEEeCCCCce
Q 006126          617 RIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ++++....+.|..++..+++.
T Consensus       597 lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          597 VFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             EEEECSTTTCEEEEETTTEEE
T ss_pred             EEEEeCCCCeEEEEEccCCCc
Confidence            555666678899999877654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.57  E-value=0.15  Score=55.81  Aligned_cols=298  Identities=11%  Similarity=-0.039  Sum_probs=162.4

Q ss_pred             eeeEecCCCCEEEEEe-CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEeccCC
Q 006126          266 RESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSN  343 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~~~  343 (660)
                      ..+.+.++++.|+.+. ..+.|...|+.+    .....+ +.+  .......+++..+  .|+.+. .++.|...|..++
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG----~~~~~~-~~~--~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDG----TNRQAV-VKG--SLPHPFALTLFED--ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSC----CEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCC----CccEEE-EeC--CCCCceEEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence            3457788766665554 457788888764    111111 111  1222345666555  444443 4678888887665


Q ss_pred             ceeee---eeccceeEEEecCCCC------------ceeeecccCCCCCCeEEEEEe---------------CCEEEEEe
Q 006126          344 KQSLE---EENVNMESQLYQPSSK------------LVMTNDIAADPKDSISCFALR---------------GSHLFSAS  393 (660)
Q Consensus       344 ~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~~~~h~~~v~~v~~s---------------~~~l~s~~  393 (660)
                      +....   .......+.++.+...            .+-...+.........|.+..               ..+|+.+.
T Consensus       245 ~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~  324 (619)
T 3s94_A          245 EGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR  324 (619)
T ss_dssp             CCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE
T ss_pred             cccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc
Confidence            43222   1122334455543110            010000000000112232221               12556666


Q ss_pred             CCcEEEEECCCCeEEE-EEc-CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC
Q 006126          394 GGKISIFSLETFQTLA-TFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN  469 (660)
Q Consensus       394 dg~I~iwd~~~~~~~~-~~~-~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~  469 (660)
                      .+.|+..++....... .+. ..-..+..++|.+.+  .+++-...+.|+.+++........+...-.....+++.+.+.
T Consensus       325 ~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~  404 (619)
T 3s94_A          325 RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR  404 (619)
T ss_dssp             SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence            6778888876553221 111 122456789999855  555555678999999875443333333335677899987555


Q ss_pred             -EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCceeeeec
Q 006126          470 -VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       470 -~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~~~~~~~~  545 (660)
                       ..++-+..+.|.+.++....      ...+....-   .....+++.|....|+.+   ....|...++. |.....+.
T Consensus       405 ~lY~tD~~~~~I~v~~~~G~~------~~~l~~~~l---~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~  474 (619)
T 3s94_A          405 NLYWTDTGTDRIEVTRLNGTM------RKILISEDL---EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLV  474 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCS------CEEEECTTC---CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE
T ss_pred             cEEEEeCCCCcEEEEeCCCCe------EEEEEECCC---CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEE
Confidence             44554567889999987632      111222222   468899999974444443   23678777774 44433443


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCe
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE  583 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~  583 (660)
                      .. .-.....+++++++..|+.+.. .+.|..+++....
T Consensus       475 ~~-~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~  512 (619)
T 3s94_A          475 NT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG  512 (619)
T ss_dssp             CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             eC-CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence            21 2566789999998777776654 4789999986544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.53  E-value=0.1  Score=53.03  Aligned_cols=228  Identities=13%  Similarity=0.157  Sum_probs=141.6

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC-CceeeEeeccC----CCeE
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT  460 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~----~~v~  460 (660)
                      .+.+|.-...++.++|+++...++.+.-... |.-=.|-.+..|+.. .+..|+.|++.. ..+.+.+..|.    ..|.
T Consensus        77 ~~iiALrag~~lQiFnle~K~klks~~~~e~-VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QII  154 (494)
T 1bpo_A           77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQII  154 (494)
T ss_dssp             SSCEEEEETTEEEEEETTTTEEEEEEECSSC-CCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred             CcEEEEecCCeEEEEchHHhhhhcceecCCC-ceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecchhcccceEE
Confidence            3445555578999999999999888876554 434455444433322 256899999974 35666666553    4566


Q ss_pred             EEEEeCCCCEEEEEeC-------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEE-Ee----
Q 006126          461 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IH----  526 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~-~~----  526 (660)
                      .-..+++.++++..+-       .|.+.+|..+.+       +....+||.   +....+.+..  ....+.+ +.    
T Consensus       155 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             EEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSE---EEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             EEEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeee---eeeEEEecCCCCCCceEEEEEEecCC
Confidence            7777889998775432       467888888762       222566775   2222222221  1122333 42    


Q ss_pred             cCcEEEEeCCCC---ce------eee-ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC
Q 006126          527 EGQIDVYEAPTL---NH------TSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP  596 (660)
Q Consensus       527 d~~i~iwd~~~~---~~------~~~-~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  596 (660)
                      .+.++|.++...   ..      +.. +.+........++..|+.-..++.-+.-|.|++||+.++.++..-...     
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs-----  299 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS-----  299 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc-----
Confidence            268999998532   11      111 122222455668899999899999999999999999999988765432     


Q ss_pred             CCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                         ...+.  .-+.+. +..=++.....|.|.--.++...
T Consensus       300 ---~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          300 ---GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             ---SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred             ---CCceE--EecccC-CCCcEEEEccCceEEEEEEcccc
Confidence               44455  333344 33445555688887777766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.49  E-value=0.18  Score=55.09  Aligned_cols=334  Identities=11%  Similarity=-0.006  Sum_probs=174.7

Q ss_pred             CCCceeeEecCCCCEEEEEe-CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEe
Q 006126          262 NNQSRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWK  339 (660)
Q Consensus       262 ~~~~~~~~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~  339 (660)
                      -.....++|++.+..|+.+. ..+.|..++..+.   .....+ +..  -......+++.+.+..|+.+. ..+.|.+.+
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~---~~~~~v-~~~--~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~  112 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT---ESVQNV-VVS--GLLSPDGLACDWLGEKLYWTDSETNRIEVSN  112 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC---CceEEE-EeC--CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence            33455668898777666554 4577888888641   111111 211  135789999999766666554 467888777


Q ss_pred             ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcCC
Q 006126          340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANP  414 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~  414 (660)
                      .+......          +..             ..-.....+++.  +.+|..+.   .+.|...++............
T Consensus       113 ~dG~~~~~----------l~~-------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~  169 (619)
T 3s94_A          113 LDGSLRKV----------LFW-------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  169 (619)
T ss_dssp             TTSCSCEE----------EEC-------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             CCCCCEEE----------EEe-------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence            65443210          000             122335567776  45555555   256776776533332223333


Q ss_pred             CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          415 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       415 ~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      -.....+++++++  +.++-...+.|..+|+..........+......++++..+ ..+++-...+.|...|..+++...
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            4456889999876  4445556678999998754332222222223346667554 344444456789999987764321


Q ss_pred             ce------e--eeee-----eeccCCC---CCCeEEEE-----------Eec-------C--------CcEEEEEecCcE
Q 006126          493 SK------F--LHSF-----QTGLVPE---TTIVNHIQ-----------FHP-------D--------QIHLLSIHEGQI  530 (660)
Q Consensus       493 ~~------~--~~~~-----~~~~~~~---~~~v~~~~-----------~sp-------~--------~~~l~~~~d~~i  530 (660)
                      ..      +  +...     +.+..+-   .+....++           ..|       |        ..+|+.+..+.|
T Consensus       249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i  328 (619)
T 3s94_A          249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL  328 (619)
T ss_dssp             ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred             EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence            10      0  0000     0000000   00011111           112       2        124555666778


Q ss_pred             EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEE
Q 006126          531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA  609 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~  609 (660)
                      +..++...........-..-..+..++|++.+..|+.+. ..+.|+.+++........+..      +  -.  .+..++
T Consensus       329 ~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~------~--~~--~p~GlA  398 (619)
T 3s94_A          329 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA------Q--IA--HPDGIA  398 (619)
T ss_dssp             EEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--CS--CCCEEE
T ss_pred             EEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC------C--CC--CcCceE
Confidence            888886543221111111245678899998666666554 468899999876543333321      1  11  123677


Q ss_pred             EecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          610 AHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       610 ~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      +.+..+++.++-+..+.|.+.++...
T Consensus       399 vD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          399 VDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EecccCcEEEEeCCCCcEEEEeCCCC
Confidence            77634555566556678888877644

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.41  E-value=0.0073  Score=59.53  Aligned_cols=171  Identities=8%  Similarity=0.038  Sum_probs=109.9

Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEE---ecCCcEEEEEe---
Q 006126          455 HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQF---HPDQIHLLSIH---  526 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~---sp~~~~l~~~~---  526 (660)
                      .....-++.|++....+..++ ..++|..||...+..... .+..+. .+...  ..+..+.|   .|+++++++..   
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~--~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGE--QQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCS--EEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCc--ceeeEEEEeccCCCCcEEEEEcccc
Confidence            344455788988655666555 789999999975432111 111000 01110  24578999   68888887643   


Q ss_pred             -----------cCcEEEEeCC---CCceeeeecCCC-----------CCCCeEEEEEccCCCEEEEEecC-CeEEEEECC
Q 006126          527 -----------EGQIDVYEAP---TLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCKS-GHVKVFDTS  580 (660)
Q Consensus       527 -----------d~~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~s~dg~~l~sg~~d-g~I~iwd~~  580 (660)
                                 +..|..||+.   +++.+.......           .......++..++|+..++++.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                       4679999998   777654432110           12347899999999999999988 888888876


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ... ...+....  +.+.  .....+.++++| ++..|++...+|.+.-+|+..
T Consensus       168 G~~-~~~~~~~~--~~~~--~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 GKT-VSTFAWES--GNGG--QRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCC-EEEEEECC--CCSS--SCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             CCE-EeeeeecC--CCcc--cccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence            543 22222110  1111  112244899999 899888887799999999884

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.34  E-value=0.43  Score=56.02  Aligned_cols=308  Identities=10%  Similarity=-0.002  Sum_probs=162.2

Q ss_pred             CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC------CCEEEEEEC-CCcEEEEeccCCcee
Q 006126          274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQS  346 (660)
Q Consensus       274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd------g~~l~s~s~-dg~i~vw~~~~~~~~  346 (660)
                      +.+++.++ ++.+.++.+..+. -.......+     ...|.|+++.|.      +++++.|.. |++++|+++...+..
T Consensus       523 ~~~vvva~-g~~l~~fel~~~~-L~~~~~~~l-----~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          523 SSQVVVAV-GRALYYLQIHPQE-LRQISHTEM-----EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             SSEEEEEE-TTEEEEEEEETTE-EEEEEEEEC-----SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCEEEEEE-CCEEEEEEeeCCc-eeeecccCC-----CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence            44566664 5677777765311 112222333     568999999864      368999996 999999998754321


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEC--CCCeEEEE--EcCCCCC
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSL--ETFQTLAT--FANPPPI  417 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~--~~~~~~~~--~~~~~~~  417 (660)
                      ..          ...            +......++.+.    ..+|..|- ||.+..+.+  .+|.....  ..-...+
T Consensus       596 ~~----------~~L------------~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~p  653 (1158)
T 3ei3_A          596 HK----------EML------------GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP  653 (1158)
T ss_dssp             EE----------EEC------------CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSC
T ss_pred             EE----------EEC------------CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCc
Confidence            10          000            111223444443    33566666 887755544  45544322  2222344


Q ss_pred             eEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-EEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          418 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-TCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       418 v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      +.-..+...|  .+++++ +....+|.-+ ++.... .-.-..+ ....|+..  ..-++..+ ++.++|.-+....   
T Consensus       654 v~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~---  726 (1158)
T 3ei3_A          654 TVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ---  726 (1158)
T ss_dssp             CEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS---
T ss_pred             eEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC---
Confidence            5444444444  444444 3433344333 332211 1111123 23345432  23344433 5668888876532   


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-e--------------------------------------------
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-H--------------------------------------------  526 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~--------------------------------------------  526 (660)
                      ...+++++-+     ..+..++++|+.+.+++ . .                                            
T Consensus       727 ~~~~~~ipL~-----~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  801 (1158)
T 3ei3_A          727 KLHIRTVPLY-----ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG  801 (1158)
T ss_dssp             SEEEEEEECS-----SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred             CeeEEEEeCC-----CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence            2233333333     35778888887766544 2 1                                            


Q ss_pred             ----cCcEEEEeCCCCceeeeecCCCCCCCeEEEEE---ccC-CCEEEEEe----------cCCeEEEEECCCCeeEEEe
Q 006126          527 ----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATY---SCD-GKCIYVSC----------KSGHVKVFDTSTLELRCQI  588 (660)
Q Consensus       527 ----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~d-g~~l~sg~----------~dg~I~iwd~~~~~~~~~~  588 (660)
                          -+.|++.|..+.+.+..+.... ...+.+++.   ..+ ..++++|+          ..|.|++|++..+++....
T Consensus       802 ~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~  880 (1158)
T 3ei3_A          802 EEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA  880 (1158)
T ss_dssp             CEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred             CceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence                1247778877777776665532 444555543   322 47888886          2488999999765443332


Q ss_pred             ecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          589 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       589 ~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ...   .    .+.++  +++--  +| +|++|- .++|++|++...+
T Consensus       881 ~~~---v----~g~v~--al~~~--~g-~Lla~i-g~~l~vy~l~~~~  915 (1158)
T 3ei3_A          881 EKE---V----KGAVY--SMVEF--NG-KLLASI-NSTVRLYEWTTEK  915 (1158)
T ss_dssp             EEE---E----SSCEE--EEEEE--TT-EEEEEE-TTEEEEEEECTTS
T ss_pred             EEE---c----CCcCE--EEeee--CC-EEEEEc-CCEEEEEECCCCc
Confidence            211   0    23344  44422  45 444443 4789999997654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.32  E-value=0.05  Score=53.65  Aligned_cols=227  Identities=10%  Similarity=0.006  Sum_probs=115.9

Q ss_pred             EEEEEe-C--CcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeE--eecc
Q 006126          388 HLFSAS-G--GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAK--LKGH  455 (660)
Q Consensus       388 ~l~s~~-d--g~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~--~~~~  455 (660)
                      .++.|+ +  ..+.+||..+.+-...-  .........+.  -++ .++.|+.+    ..+.+||+.+++-...  +...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            344555 2  57999999887644321  11111222222  356 67777755    5789999987753322  1111


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee--
Q 006126          456 QNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH--  526 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~--  526 (660)
                      ......+.+  +++.++.|+.+      ..+.+||..+.+-..   +.......     .-.+++.. +++.++. |.  
T Consensus        92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~  160 (306)
T 3ii7_A           92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQR-----CSHGMVEA-NGLIYVCGGSLG  160 (306)
T ss_dssp             CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSSCC-----BSCEEEEE-TTEEEEECCEES
T ss_pred             ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcCCc-----ceeEEEEE-CCEEEEECCCCC
Confidence            111122222  67777777765      468899998854211   11111111     11122222 5565555 32  


Q ss_pred             -------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeeccccc
Q 006126          527 -------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYA  594 (660)
Q Consensus       527 -------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~  594 (660)
                             -..+.+||+.+.+-...-... ....-.+++. -++++++.|+.+     ..+.+||+.+.+-... ...   
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~---  234 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SPM---  234 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CCC---
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CCC---
Confidence                   345899999876543221111 1111112222 266777777654     4689999988753322 111   


Q ss_pred             CCCCcCcccceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCC
Q 006126          595 QPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL  642 (660)
Q Consensus       595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~  642 (660)
                      +..  .  ....++.+   ++.+++.|+.+     ..+.+||+.+.  .|...
T Consensus       235 p~~--r--~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~  278 (306)
T 3ii7_A          235 PWK--G--VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETD--KWVAN  278 (306)
T ss_dssp             SCC--B--SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTT--EEEEE
T ss_pred             CCC--c--cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC--eEEeC
Confidence            111  1  11112222   56788888854     46788888765  46543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.21  E-value=0.17  Score=50.72  Aligned_cols=197  Identities=13%  Similarity=0.052  Sum_probs=111.6

Q ss_pred             CeEEEEEcCCC-eEEEE------------eCCCeEEEEeCCCC--cee-eEeec-----cCCCeEEEEEeC--CCC-EEE
Q 006126          417 IATYFILLPQD-LFAFG------------FDDSSILVHCPCTK--KTK-AKLKG-----HQNRITCLAYSL--SLN-VLV  472 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~------------~~d~~I~iwd~~~~--~~~-~~~~~-----~~~~v~~l~~sp--~~~-~l~  472 (660)
                      ..-.+...|+| .++++            ..+|.|.++|+.+.  +.. -.+.+     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44567788888 44444            26899999998742  221 12222     224667787766  454 344


Q ss_pred             EE-eC--CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe------------------cCcEE
Q 006126          473 SS-GA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH------------------EGQID  531 (660)
Q Consensus       473 s~-s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------------d~~i~  531 (660)
                      ++ ..  +.+|.+|++..+... ...+. ...+..-  ...+.+.+.++|.+.++..                  .+.|+
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~-~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKS-LLHLK-TIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE-EEEEE-EECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCE-EEEEe-ccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            44 33  467888877653221 12222 2222221  5788999999999877642                  13455


Q ss_pred             EEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCC-CeeEE--EeecccccCCCCcCcccceEE
Q 006126          532 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTST-LELRC--QINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       532 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~-~~~~~--~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      .+|.  ++. ..+..  .-...+.++||||++.|+.+.. .+.|+.|++.. +++..  .+..     .|      ..-.
T Consensus       207 r~d~--~~~-~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-----~g------~PDG  270 (355)
T 3sre_A          207 YYSP--NDV-RVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----DT------LVDN  270 (355)
T ss_dssp             EECT--TCC-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----SS------EEEE
T ss_pred             EEEC--CeE-EEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----CC------CCce
Confidence            5555  332 22211  1455788999999998887654 68999999863 43322  2211     11      1236


Q ss_pred             EEEecCCCCEEEEEeCC-CeEEEEeCC
Q 006126          608 IAAHPLEPNRIALGLTN-GRVHVIEPL  633 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~D-g~v~iw~~~  633 (660)
                      ++..+.+|++.+++..+ +.|..|++.
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             EEEeCCCCcEEEEecCCceEEEEECCC
Confidence            77777228887776644 344444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.19  E-value=0.24  Score=49.97  Aligned_cols=228  Identities=10%  Similarity=0.052  Sum_probs=123.1

Q ss_pred             CCeEEEEEe-CCEEEEEe-CCcEEEEECCCCe-EEEEEc---CCCCCeEEEEEcCC----CeEEEEeC----C----CeE
Q 006126          377 DSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFA---NPPPIATYFILLPQ----DLFAFGFD----D----SSI  438 (660)
Q Consensus       377 ~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~-~~~~~~---~~~~~v~~v~~sp~----~~l~s~~~----d----~~I  438 (660)
                      .....++|. +..|+.+. +|.|.+++ .+++ .+..+.   ........++++|+    +.|+++..    +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            346788998 44455556 89999997 4454 222221   22356789999998    44433332    3    578


Q ss_pred             EEEeCCCC--c-----ee-eEeec-cCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCeeeece--
Q 006126          439 LVHCPCTK--K-----TK-AKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK--  494 (660)
Q Consensus       439 ~iwd~~~~--~-----~~-~~~~~-~~~~v~~l~~sp~~~~l~s~s~-------------dg~i~vwd~~~~~~~~~~--  494 (660)
                      ..|+...+  .     .+ ..+.. .......+.|.|||.+.++.+.             .|.|.-++... +.....  
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf  186 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF  186 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence            88887644  1     11 11221 1123467899999987776432             14555555443 100000  


Q ss_pred             -eeeeeeeccCCCCCCeEEEEEec-CCcEEEEE--ecC--cEEEEeCCCCc------------------eeeeecCCCCC
Q 006126          495 -FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG--QIDVYEAPTLN------------------HTSQLVPDKMD  550 (660)
Q Consensus       495 -~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~--~d~--~i~iwd~~~~~------------------~~~~~~~~~~~  550 (660)
                       .......++.    ....++|+| +|..+++-  .+.  .|.+..  .+.                  ++..+.  ...
T Consensus       187 ~~~~i~a~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~  258 (354)
T 3a9g_A          187 PNSPIWSYGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SET  258 (354)
T ss_dssp             TTCCEEEECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCC
T ss_pred             CCCcEEEEccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCC
Confidence             0111233443    356899999 67766662  222  244332  221                  111220  113


Q ss_pred             CCeEEEEEc-------cCCCEEEEEecCCeEEEEECCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          551 LPITYATYS-------CDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       551 ~~v~~~~~s-------~dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      .....++|.       .+|.++++....+.|...++... +......   +. .+   ..-.+..+++.| ||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~-~~---~~~rp~~v~~~p-DG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FF-KN---VFGRLRDVVIDD-DGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---EC-TT---TSCCEEEEEECT-TSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ec-cC---CCCCeeEEEECC-CCcEEEEEe
Confidence            457788883       56777777666788988888753 3321111   01 01   112355899999 787777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.18  E-value=0.068  Score=52.47  Aligned_cols=223  Identities=11%  Similarity=0.025  Sum_probs=112.3

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCc---eee--EeeccCCCeEEEE
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---TKA--KLKGHQNRITCLA  463 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~---~~~--~~~~~~~~v~~l~  463 (660)
                      ..+.+||+.+.+....-..........+...++ .++.|+.+     ..+.+||+.+++   -..  .+......-..+.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~  110 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT  110 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence            367888888765433211111111111222356 66777755     368999988765   222  1211111112222


Q ss_pred             EeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEE
Q 006126          464 YSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV  532 (660)
Q Consensus       464 ~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~i  532 (660)
                      +  +++.++.|+.+     ..+.+||..+.+-..   +........    . .+++.. +++.++. |.+     ..+.+
T Consensus       111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~----~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~  179 (301)
T 2vpj_A          111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTARE----G-AGLVVA-SGVIYCLGGYDGLNILNSVEK  179 (301)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE---EEECSSCCB----S-CEEEEE-TTEEEEECCBCSSCBCCCEEE
T ss_pred             E--CCEEEEEcccCCCcccceEEEEcCCCCeEEE---CCCCCCCcc----c-ceEEEE-CCEEEEECCCCCCcccceEEE
Confidence            2  66777777654     358889988754211   111111111    1 122222 5666665 333     46999


Q ss_pred             EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126          533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      ||+.+.+-...-...........+.  -++++++.|+.+     ..+.+||+.+.+-...-..    +...    .....
T Consensus       180 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~r----~~~~~  249 (301)
T 2vpj_A          180 YDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM----TTPR----CYVGA  249 (301)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC----SSCC----BSCEE
T ss_pred             EeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC----CCcc----cceeE
Confidence            9998765432211111111112222  367777777764     4689999988764433111    1111    11112


Q ss_pred             EEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCCC
Q 006126          608 IAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP  643 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~~  643 (660)
                      +.+   ++.+++.|+.+     ..|.+||+.+.  .|...+
T Consensus       250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~  285 (301)
T 2vpj_A          250 TVL---RGRLYAIAGYDGNSLLSSIECYDPIID--SWEVVT  285 (301)
T ss_dssp             EEE---TTEEEEECCBCSSSBEEEEEEEETTTT--EEEEEE
T ss_pred             EEE---CCEEEEEcCcCCCcccccEEEEcCCCC--eEEEcC
Confidence            222   56778888765     46788888764  466543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.15  E-value=0.28  Score=49.93  Aligned_cols=261  Identities=10%  Similarity=0.043  Sum_probs=158.1

Q ss_pred             CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC
Q 006126          284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS  363 (660)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  363 (660)
                      .+|.|-|+..+   ....+..+       .--+.-.+|..+.+|.-. ..++.|+|+++...                  
T Consensus        48 ~~vvIiDl~~~---~~~~rrpi-------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k------------------   98 (494)
T 1bpo_A           48 AQVVIIDMNDP---SNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------   98 (494)
T ss_dssp             CEEEEEETTST---TSCEEEEC-------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE------------------
T ss_pred             CeEEEEECCCC---Ccceeccc-------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhh------------------
Confidence            46888888762   22222222       223455678777665554 67788887766544                  


Q ss_pred             CceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCC-CeEEEEEcCC----CCCeEEEEEcCCC-eEE-EEe--
Q 006126          364 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LFA-FGF--  433 (660)
Q Consensus       364 ~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~-~~~~~~~~~~----~~~v~~v~~sp~~-~l~-s~~--  433 (660)
                         ++..   .....|..=.|- .+.|+-.++..|.-|++.. ..+.+.|..|    ...|.....+++. +++ +|-  
T Consensus        99 ---lks~---~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~  172 (494)
T 1bpo_A           99 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  172 (494)
T ss_dssp             ---EEEE---ECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEE
T ss_pred             ---hcce---ecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecc
Confidence               2111   123345544565 8899999999999999974 3566666654    3456677778888 443 332  


Q ss_pred             ----CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC---CCEEEEEeCC---CcEEEEEcCCC---e-eeeceeeee-
Q 006126          434 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---LNVLVSSGAD---AQLCVWDAVGW---K-KLCSKFLHS-  498 (660)
Q Consensus       434 ----~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---~~~l~s~s~d---g~i~vwd~~~~---~-~~~~~~~~~-  498 (660)
                          -.|.+.+|..+. +.-+.++||......+.+.-+   ...++.+...   +.+.+.++...   . ....+...- 
T Consensus       173 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~  251 (494)
T 1bpo_A          173 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF  251 (494)
T ss_dssp             ETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred             cCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence                235788998774 456677888765544433211   1234444432   78999998653   1 111111110 


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                      .+.....  ....++..++.-..++. ..-|.|++||++++.++..-...  ..+|...+-+....=++.....|.|.--
T Consensus       252 fppe~~~--DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          252 FPPEAQN--DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             CCTTSTT--CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred             CCccccc--CceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEE
Confidence            1111111  45667888887777766 78899999999999998776543  5666666655555555555577877766


Q ss_pred             ECCCCee
Q 006126          578 DTSTLEL  584 (660)
Q Consensus       578 d~~~~~~  584 (660)
                      .++...+
T Consensus       328 ~v~e~~i  334 (494)
T 1bpo_A          328 CVEEENI  334 (494)
T ss_dssp             EECTTTH
T ss_pred             EEccccc
Confidence            6665543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.12  E-value=0.16  Score=49.80  Aligned_cols=185  Identities=9%  Similarity=0.018  Sum_probs=96.5

Q ss_pred             CCEEEEEe-C----CcEEEEECCCCeEEEEEcCCC--CCeEEEEEcCCC-eEEEEeCC------CeEEEEeCCCCceeeE
Q 006126          386 GSHLFSAS-G----GKISIFSLETFQTLATFANPP--PIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAK  451 (660)
Q Consensus       386 ~~~l~s~~-d----g~I~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~-~l~s~~~d------~~I~iwd~~~~~~~~~  451 (660)
                      +..++.|+ +    ..+.+||+.+.+....-....  .....+.+  ++ .++.|+.+      ..+.+||+.+.+-...
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            55556665 4    578999998876543322111  12222222  56 66777655      3689999887653322


Q ss_pred             --eeccCCCeEEEEEeCCCCEEEEEeC---------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          452 --LKGHQNRITCLAYSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       452 --~~~~~~~v~~l~~sp~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                        +......-..+ . -+++.++.|+.         -..+.+||+.+.+-.   .+.......     .-.+++.. +++
T Consensus       134 ~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r-----~~~~~~~~-~~~  202 (306)
T 3ii7_A          134 PSMLTQRCSHGMV-E-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIEAR-----KNHGLVFV-KDK  202 (306)
T ss_dssp             CCCSSCCBSCEEE-E-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSSCC-----BSCEEEEE-TTE
T ss_pred             CCCcCCcceeEEE-E-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccchh-----hcceEEEE-CCE
Confidence              11111111222 2 26667776653         345889999885321   111111111     11122223 566


Q ss_pred             EEEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeE
Q 006126          521 HLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR  585 (660)
Q Consensus       521 ~l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~  585 (660)
                      .++. |.+     ..+.+||+.+.+-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+-.
T Consensus       203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            6665 332     4689999987654322111111122222333  67788888854     56899999886533

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=97.11  E-value=0.00025  Score=53.82  Aligned_cols=61  Identities=11%  Similarity=0.262  Sum_probs=49.2

Q ss_pred             cccccHHHHHHHHHHhhchhhHHHHHHHHhhhccccccH--HHHHHHHhcCchHhHHHhhhhh
Q 006126           60 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDI--NYFREYITSGEWDNAEKYLSAF  120 (660)
Q Consensus        60 ~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~~--~~l~~~i~~G~w~~~~~~l~~~  120 (660)
                      +.+.+++|+.+-|++||..+||.+++.+|.+|.++..+-  ..-.+-+++-.|..++.+-+.+
T Consensus         5 Lt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI   67 (88)
T 1uuj_A            5 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   67 (88)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence            566789999999999999999999999999999988752  2224556677888888776554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.0012  Score=65.96  Aligned_cols=200  Identities=7%  Similarity=-0.033  Sum_probs=110.2

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126          428 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAY--SL-SLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG  502 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~--sp-~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~  502 (660)
                      .++.++.||.|+-+|..+|+.+-++... ..++....-  .+ ++..++.. +.||.|..+|..+|.......+..+.  
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv--   89 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV--   89 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH--
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce--
Confidence            7889999999999999999998887653 122221110  01 22333333 68999999999887433222111000  


Q ss_pred             cCCCCCCeEE---EEE------ecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe-----EEEEEc-----cCC
Q 006126          503 LVPETTIVNH---IQF------HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI-----TYATYS-----CDG  562 (660)
Q Consensus       503 ~~~~~~~v~~---~~~------sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v-----~~~~~s-----~dg  562 (660)
                      ..   +++..   ...      +.+ ..+++ +.++.+...|+++|+.+..+........+     .+....     ..+
T Consensus        90 ~~---SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~  165 (339)
T 2be1_A           90 ST---SPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE  165 (339)
T ss_dssp             TT---CSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred             ec---cccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence            00   11211   001      123 44555 79999999999999999888653211111     111111     124


Q ss_pred             CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126          563 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW  639 (660)
Q Consensus       563 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w  639 (660)
                      ..|+.|..+..+.+.+ ++|+ ++.+....+.+... ...+. ..-..+. |+.+ +.++.||.|.-.|..+|+.+|
T Consensus       166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            6788888888888877 5565 44333211111000 00000 0000112 4555 447889999999999999999

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.03  E-value=0.34  Score=48.82  Aligned_cols=226  Identities=10%  Similarity=0.053  Sum_probs=115.9

Q ss_pred             CeEEEEEe--CCEEEEEeCCcEEEEECCCCeEE--EEEc---CCCCCeEEEEEcCC----CeEE-EEeCC-----CeEEE
Q 006126          378 SISCFALR--GSHLFSASGGKISIFSLETFQTL--ATFA---NPPPIATYFILLPQ----DLFA-FGFDD-----SSILV  440 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~--~~~~---~~~~~v~~v~~sp~----~~l~-s~~~d-----~~I~i  440 (660)
                      ....++|.  |.++++-.+|.|.+++  +++..  ..+.   ........++++|+    +.|+ +-...     +.|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            46788998  5544443389999998  44422  2221   22456789999998    4333 33322     67888


Q ss_pred             EeCCCCc-----e-eeEee---ccCCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEEcCCCeeeec-----
Q 006126          441 HCPCTKK-----T-KAKLK---GHQNRITCLAYSLSLNVLVSSGAD-------------AQLCVWDAVGWKKLCS-----  493 (660)
Q Consensus       441 wd~~~~~-----~-~~~~~---~~~~~v~~l~~sp~~~~l~s~s~d-------------g~i~vwd~~~~~~~~~-----  493 (660)
                      |+...+.     . +..+.   +.......++|.|||.+.++.+..             |.|.-+|... .....     
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~  188 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG  188 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence            8876432     1 11132   111234689999999776664321             4555555543 10000     


Q ss_pred             ---eeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-E-ecC-------cEEEEeCCCCc------------------eee
Q 006126          494 ---KFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-I-HEG-------QIDVYEAPTLN------------------HTS  542 (660)
Q Consensus       494 ---~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~-~d~-------~i~iwd~~~~~------------------~~~  542 (660)
                         ........++.    ....++|+| +|..+++ . .+.       .|.+..  .+.                  ++.
T Consensus       189 ~~~~~~~i~a~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          189 RRGARPEVYSLGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             CTTSCTTEEEECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CCCCCccEEEEcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeE
Confidence               00111223332    356789999 6776665 2 222       233332  222                  111


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE-EeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG  621 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~  621 (660)
                      .+   .+......++| .+|.++++....+.|...++....... .-....+.. .  .  -.+..+++.| ||.+.++.
T Consensus       263 ~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~--~--~rp~~v~~~p-dG~lyv~~  332 (352)
T 2ism_A          263 FW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G--F--GRLREVQVGP-DGALYVTT  332 (352)
T ss_dssp             EC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S--S--CCEEEEEECT-TSCEEEEE
T ss_pred             ec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c--C--CCeeEEEECC-CCcEEEEE
Confidence            11   11234567777 567666666566778777766432110 000000100 1  1  1245899999 78776665


Q ss_pred             e
Q 006126          622 L  622 (660)
Q Consensus       622 s  622 (660)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.99  E-value=0.14  Score=50.18  Aligned_cols=222  Identities=11%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceeeE--eeccCCCeEEEEEe
Q 006126          395 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK--LKGHQNRITCLAYS  465 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s  465 (660)
                      ..+..||+.+.+....-....... .+++. -++ .++.|+.++     .+.+||+.+.+-...  +......-..+.+ 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence            357788888765433211111111 12222 256 667776543     688999887643221  1111111122222 


Q ss_pred             CCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-------CcEEE
Q 006126          466 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------GQIDV  532 (660)
Q Consensus       466 p~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-------~~i~i  532 (660)
                       +++.++.|+.++     .+.+||+.+.+-..   +.......     .-.+++.. +++.++. |.+       ..+.+
T Consensus       108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  177 (302)
T 2xn4_A          108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRR-----SSVGVGVV-GGLLYAVGGYDVASRQCLSTVEC  177 (302)
T ss_dssp             -TTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSSCC-----BSCEEEEE-TTEEEEECCEETTTTEECCCEEE
T ss_pred             -CCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCCcc-----cCceEEEE-CCEEEEEeCCCCCCCccccEEEE
Confidence             667777777653     57788988754211   11111111     11122222 5555555 332       35899


Q ss_pred             EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126          533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      ||+.+.+-...-...........+.  -++++++.|+.+     ..+.+||+.+.+-...-. ..   ...    .....
T Consensus       178 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~---~~r----~~~~~  247 (302)
T 2xn4_A          178 YNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-MN---MCR----RNAGV  247 (302)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-CS---SCC----BSCEE
T ss_pred             EeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-CC---Ccc----ccCeE
Confidence            9998765432211111111112222  367777787765     468999998875433211 11   111    11112


Q ss_pred             EEEecCCCCEEEEEeCCC-----eEEEEeCCCCceeccCCC
Q 006126          608 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLP  643 (660)
Q Consensus       608 v~~sp~d~~~l~s~s~Dg-----~v~iw~~~~~~~~w~~~~  643 (660)
                      +.+   ++.+++.|+.++     .|.+||+.+.  .|...+
T Consensus       248 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~  283 (302)
T 2xn4_A          248 CAV---NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVS  283 (302)
T ss_dssp             EEE---TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECS
T ss_pred             EEE---CCEEEEECCcCCCcccccEEEEcCCCC--eEEECC
Confidence            222   567888887654     4889998875  576554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.97  E-value=0.63  Score=50.88  Aligned_cols=197  Identities=10%  Similarity=-0.007  Sum_probs=119.1

Q ss_pred             CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeec------cCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCC
Q 006126          417 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG------HQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVG  487 (660)
Q Consensus       417 ~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd~~~  487 (660)
                      .+..++|.+.+  .+.+-...+.|+.+++........+..      ....+..+++...++.|. +-+..+.|.+.++..
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G  420 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG  420 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence            46678888865  444555567888888764333333322      234678999998766554 555678899999865


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-EecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK  563 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~  563 (660)
                       +.     ...+.....   .....+++.| .|..+.+ ....  .|...++. |.....+... .-.....++++++++
T Consensus       421 -~~-----~~~l~~~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~-~l~~P~gla~D~~~~  489 (628)
T 4a0p_A          421 -RS-----VGVVLKGEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFS-GLSKPIALALDSRLG  489 (628)
T ss_dssp             -CE-----EEEEEECTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECS-SCSCEEEEEEETTTT
T ss_pred             -Ce-----EEEEEeCCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEec-cCCCccEEEEeCCCC
Confidence             21     111222222   4688999999 5555555 2222  67777774 5544444332 245678999999888


Q ss_pred             EEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          564 CIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       564 ~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .|+.+.. .+.|..+++.... ...+..      +.-.+   ..+++...  +.++.+-...+.|...+..+|+
T Consensus       490 ~LYw~D~~~~~I~~~~~dG~~-r~~~~~------~~~~~---P~glav~~--~~ly~tD~~~~~i~~~~k~~G~  551 (628)
T 4a0p_A          490 KLFWADSDLRRIESSDLSGAN-RIVLED------SNILQ---PVGLTVFE--NWLYWIDKQQQMIEKIDMTGRE  551 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSCS-CEEEEC------SSCSC---EEEEEEET--TEEEEEETTTTEEEEEETTSSS
T ss_pred             EEEEEeCCCCEEEEEeCCCCc-eEEEEc------CCCCC---cEEEEEEC--CEEEEEECCCCeEEEEECcCCC
Confidence            8776654 5889999986543 333321      00011   33566544  4455555566778777777665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.95  E-value=0.39  Score=54.05  Aligned_cols=236  Identities=12%  Similarity=0.111  Sum_probs=134.3

Q ss_pred             CCCeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEee
Q 006126          376 KDSISCFALR-GSHLFSASGGKISIFSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK  453 (660)
Q Consensus       376 ~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~  453 (660)
                      ...|.++.-. ..+|..|...-+..||-.+.+..... ......|.++....+|.|..|+.+| +..||..+.+......
T Consensus        21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~   99 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPET   99 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSC
T ss_pred             cceEEEEEECCCCCEEEEECCCccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECccc
Confidence            4568888888 66666677333666774332211100 1123468888877777666666655 7899988764332111


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEE
Q 006126          454 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY  533 (660)
Q Consensus       454 ~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iw  533 (660)
                      .....|.++.. .+| .|..++.+ .+..+|..+++...   +.....+...  ..|.++...++|...+... +.+..+
T Consensus       100 ~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~---~~~~~~~l~~--~~i~~i~~d~~g~lWigt~-~Gl~~~  170 (758)
T 3ott_A          100 DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS---FDTRRNGLPN--NTIYSIIRTKDNQIYVGTY-NGLCRY  170 (758)
T ss_dssp             CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE---ECHHHHCCSC--SCEEEEEECTTCCEEEEET-TEEEEE
T ss_pred             CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE---eccCCCCcCC--CeEEEEEEcCCCCEEEEeC-CCHhhC
Confidence            12335777654 355 45556655 67889987643211   1000011111  4688888888887766543 458888


Q ss_pred             eCCCCceeeeecCCC----CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEE
Q 006126          534 EAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA  609 (660)
Q Consensus       534 d~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~  609 (660)
                      |..+++.. .+....    ....|.++...+++..|..|+. +-+..+|..+++........        ...+.  ++.
T Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--------~~~i~--~i~  238 (758)
T 3ott_A          171 IPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--------NNSIK--SLA  238 (758)
T ss_dssp             ETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--------EEEEE--EEE
T ss_pred             ccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--------CCeEE--EEE
Confidence            98765532 221111    1234888888887775555554 45888998877643321110        22233  666


Q ss_pred             EecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          610 AHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       610 ~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      ..+ ++.+.+. +. +-+.+++..+++
T Consensus       239 ~d~-~g~lWig-T~-~Gl~~~~~~~~~  262 (758)
T 3ott_A          239 LDG-NGDLLAG-TD-NGLYVYHNDTTP  262 (758)
T ss_dssp             ECT-TCCEEEE-ET-TEEEEECCTTSC
T ss_pred             EcC-CCCEEEE-eC-CceeEEecCCCc
Confidence            666 5665544 44 458888876654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.91  E-value=0.31  Score=48.02  Aligned_cols=224  Identities=9%  Similarity=0.056  Sum_probs=112.1

Q ss_pred             eCCcEEEEECCCCeEEEE-EcCCCCCeEEEEEcCCC-eEEEEeC-----C------CeEEEEeCCCCceeeE--eeccCC
Q 006126          393 SGGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD-----D------SSILVHCPCTKKTKAK--LKGHQN  457 (660)
Q Consensus       393 ~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp~~-~l~s~~~-----d------~~I~iwd~~~~~~~~~--~~~~~~  457 (660)
                      +...+..||..+++-... +..+.......+...++ .++.|+.     .      ..+.+||+.+++-...  +.....
T Consensus        11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             cCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            346789999998875431 21222233333344566 6666663     1      1378899887653221  111111


Q ss_pred             CeEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e-c
Q 006126          458 RITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E  527 (660)
Q Consensus       458 ~v~~l~~sp~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~-d  527 (660)
                      .- +++.. +++.++.|+.+        ..+.+||..+.+-.   .+...+...     .-.+++. -+++.++.| . +
T Consensus        91 ~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r-----~~~~~~~-~~~~iyv~GG~~~  159 (315)
T 4asc_A           91 LF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPYVV-----YGHTVLS-HMDLVYVIGGKGS  159 (315)
T ss_dssp             SC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSSCC-----BSCEEEE-ETTEEEEECCBCT
T ss_pred             ce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCCcc-----cceeEEE-ECCEEEEEeCCCC
Confidence            11 22222 56677777632        45889999875321   111111111     1112222 355555553 3 2


Q ss_pred             -----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCeeEEEeecccccCCC
Q 006126          528 -----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPG  597 (660)
Q Consensus       528 -----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~~~g  597 (660)
                           ..+.+||..+.+-...-........-..+.  -++++++.|+.++     .+.+||+.+.+-...-. .   +..
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~---p~~  233 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-F---PQE  233 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-C---SSC
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC-C---CCc
Confidence                 469999998765432211111111112222  3677888887754     58899998875433211 1   111


Q ss_pred             CcCcccceEEEEEecCCCCEEEEEeCCC--------------eEEEEeCCCCceeccCC
Q 006126          598 TISLELYPLVIAAHPLEPNRIALGLTNG--------------RVHVIEPLESEVEWGKL  642 (660)
Q Consensus       598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg--------------~v~iw~~~~~~~~w~~~  642 (660)
                      .    .....+.+   ++.+++.|+.++              .|.+||+.+.  +|...
T Consensus       234 r----~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~  283 (315)
T 4asc_A          234 R----SSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV  283 (315)
T ss_dssp             C----BSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred             c----cceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence            1    11112222   567778777642              3667777664  57655

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.89  E-value=0.19  Score=50.40  Aligned_cols=172  Identities=11%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             CCcEEEEECCC--CeEE-EEEcCC-----CCCeEEEEEcC--CC--eEEEEe-C--CCeEEEEeCCCCc----eeeEeec
Q 006126          394 GGKISIFSLET--FQTL-ATFANP-----PPIATYFILLP--QD--LFAFGF-D--DSSILVHCPCTKK----TKAKLKG  454 (660)
Q Consensus       394 dg~I~iwd~~~--~~~~-~~~~~~-----~~~v~~v~~sp--~~--~l~s~~-~--d~~I~iwd~~~~~----~~~~~~~  454 (660)
                      +|.|.++|..+  ++.. ..+.+.     .-....+.+.+  ++  +|+++. .  +.+|.+|++..+.    .+..+.+
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g  161 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  161 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence            78999999874  2221 122221     12445666655  44  454443 3  4577787765432    2233433


Q ss_pred             c-CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126          455 H-QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH  516 (660)
Q Consensus       455 ~-~~~v~~l~~sp~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  516 (660)
                      . -...+.+.+.++|.+.++...                 .|.|.-+|..  +      +.....+-    ...+.++|+
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~------~~~~~~~l----~~pNGia~s  229 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D------VRVVAEGF----DFANGINIS  229 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C------CEEEEEEE----SSEEEEEEC
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e------EEEeecCC----cccCcceEC
Confidence            2 246789999999988776541                 2344444442  1      11112221    357889999


Q ss_pred             cCCcEEEEE--ecCcEEEEeCCC-Cce--eeeecCCCCCCCeEEEEEcc-CCCEEEEEecC-CeEEEEECC
Q 006126          517 PDQIHLLSI--HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS  580 (660)
Q Consensus       517 p~~~~l~~~--~d~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~d-g~I~iwd~~  580 (660)
                      ||++.++++  ..+.|+.||+.. +..  ...+.   .....-.+++++ +|++.+++..+ +.|..|+..
T Consensus       230 pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          230 PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            999988885  567899999863 332  12331   145677899999 59988866544 345555544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.89  E-value=0.076  Score=53.93  Aligned_cols=152  Identities=15%  Similarity=0.116  Sum_probs=93.8

Q ss_pred             cCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec-----
Q 006126          424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-----  493 (660)
Q Consensus       424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~-----  493 (660)
                      ..+| .++.+- ++.||.-++..+...+.+...    -..|..+..+|+|++|+..+ +..|.|-.+-.+.....     
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            3444 444443 477888887755444444432    12578899999999999876 56888888874321110     


Q ss_pred             --eeeeeeeeccCC--CCCCeEEEEEecC---CcEEEE-EecCcEEEEeCCCCc--ee------eeecCCCCCCCeEEEE
Q 006126          494 --KFLHSFQTGLVP--ETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLN--HT------SQLVPDKMDLPITYAT  557 (660)
Q Consensus       494 --~~~~~~~~~~~~--~~~~v~~~~~sp~---~~~l~~-~~d~~i~iwd~~~~~--~~------~~~~~~~~~~~v~~~~  557 (660)
                        ....+..-+...  ....|..+.|||-   +..|++ ..|+.|++||+....  +.      ..+........|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence              011111111100  1167999999994   456777 799999999997522  11      1111122247789999


Q ss_pred             EccCCCEEEEEe--cCCeEEEE
Q 006126          558 YSCDGKCIYVSC--KSGHVKVF  577 (660)
Q Consensus       558 ~s~dg~~l~sg~--~dg~I~iw  577 (660)
                      |+++|-.|+..+  ++|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999888777755  78888654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.88  E-value=0.15  Score=49.84  Aligned_cols=184  Identities=9%  Similarity=0.025  Sum_probs=94.9

Q ss_pred             CCEEEEEe-C-----CcEEEEECCCCe---EEEE--EcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCce
Q 006126          386 GSHLFSAS-G-----GKISIFSLETFQ---TLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT  448 (660)
Q Consensus       386 ~~~l~s~~-d-----g~I~iwd~~~~~---~~~~--~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~  448 (660)
                      +..++.|+ +     ..+.+||+.+.+   ....  +........++.+  ++ .++.|+.+     ..+.+||+.+.+-
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            55666665 4     369999998765   3322  2111122222222  56 66666644     3688999887653


Q ss_pred             eeE--eeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126          449 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  521 (660)
Q Consensus       449 ~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  521 (660)
                      ...  +......-.++.+  +++.++.|+.+     ..+.+||+.+.+-.   .+...+...     .-.+++.. +++.
T Consensus       141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r-----~~~~~~~~-~~~i  209 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT---NVTPMATKR-----SGAGVALL-NDHI  209 (301)
T ss_dssp             EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE---EECCCSSCC-----BSCEEEEE-TTEE
T ss_pred             EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE---eCCCCCccc-----ccceEEEE-CCEE
Confidence            322  2111111122222  67777777654     46889998875321   111111111     11122222 5566


Q ss_pred             EEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCee
Q 006126          522 LLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL  584 (660)
Q Consensus       522 l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~  584 (660)
                      ++. |.+     ..+.+||+.+.+-...-...........+.  -+++.++.|+.+     ..|.+||+.+.+-
T Consensus       210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            565 332     469999998765432211111111122222  367777787765     4688899887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.64  E-value=0.21  Score=49.20  Aligned_cols=221  Identities=12%  Similarity=0.057  Sum_probs=110.0

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCC-eEEEEeC----C-----CeEEEEeCCCCceeeE--eeccCCCeEE
Q 006126          395 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD----D-----SSILVHCPCTKKTKAK--LKGHQNRITC  461 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~-~l~s~~~----d-----~~I~iwd~~~~~~~~~--~~~~~~~v~~  461 (660)
                      ..+.+||..+.+....-....... .+++. -++ +++.|+.    +     ..+.+||+.+.+-...  +.........
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            468888988765433211111111 12222 255 6666665    2     3688999887643221  1111111222


Q ss_pred             EEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcE
Q 006126          462 LAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQI  530 (660)
Q Consensus       462 l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i  530 (660)
                      +.+  +++.++.|+.+     ..+.+||..+.+-.....   .+....    .- +++.. +++.++. |.+     ..+
T Consensus       118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~----~~-~~~~~-~~~iyv~GG~~~~~~~~~~  186 (308)
T 1zgk_A          118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTRRI----GV-GVAVL-NRLLYAVGGFDGTNRLNSA  186 (308)
T ss_dssp             EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSCCB----SC-EEEEE-TTEEEEECCBCSSCBCCCE
T ss_pred             EEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCcccc----ce-EEEEE-CCEEEEEeCCCCCCcCceE
Confidence            222  66777776643     468889988754221111   111111    11 22222 5565555 332     469


Q ss_pred             EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126          531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYP  605 (660)
Q Consensus       531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~  605 (660)
                      .+||+.+.+-...-...........+.+  ++++++.|+.+     ..+.+||+.+.+-...-..    +...    ...
T Consensus       187 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~r----~~~  256 (308)
T 1zgk_A          187 ECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRR----SAL  256 (308)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC----SSCC----BSC
T ss_pred             EEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC----CCCc----cce
Confidence            9999987654322111111111222222  67777777765     5699999988753332111    1111    111


Q ss_pred             EEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCC
Q 006126          606 LVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL  642 (660)
Q Consensus       606 ~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~  642 (660)
                       +++..  ++.+++.|+.+     ..+.+||+.+.  +|...
T Consensus       257 -~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~  293 (308)
T 1zgk_A          257 -GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEV  293 (308)
T ss_dssp             -EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEE
T ss_pred             -EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC--EEeec
Confidence             22222  56788888754     45788888765  56544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.52  E-value=0.37  Score=47.08  Aligned_cols=183  Identities=11%  Similarity=0.065  Sum_probs=93.7

Q ss_pred             CCEEEEEe-C-----CcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceeeE
Q 006126          386 GSHLFSAS-G-----GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK  451 (660)
Q Consensus       386 ~~~l~s~~-d-----g~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~~  451 (660)
                      +..++.|+ +     ..+.+||..+.+-...-.  ........+.  -++ .++.|+.++     .+.+||+.+.+-...
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            55566665 3     368899998776443322  1111222222  256 666676553     588899887643322


Q ss_pred             --eeccCCCeEEEEEeCCCCEEEEEeCC-------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          452 --LKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       452 --~~~~~~~v~~l~~sp~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                        +....... +++. -+++.++.|+.+       ..+.+||+.+.+-..   +........    . .+++.. +++.+
T Consensus       140 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~----~-~~~~~~-~~~iy  208 (302)
T 2xn4_A          140 APMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRS----G-AGVGVL-NNLLY  208 (302)
T ss_dssp             CCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSSCCB----S-CEEEEE-TTEEE
T ss_pred             CCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCccccc----c-ccEEEE-CCEEE
Confidence              11111111 2222 256677776543       358899998753211   111111111    1 122222 56666


Q ss_pred             EE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCe
Q 006126          523 LS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE  583 (660)
Q Consensus       523 ~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~  583 (660)
                      +. |.+     ..+.+||+.+.+-...-......... .++ ..++++++.|+.++     .+.+||+.+.+
T Consensus       209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            66 433     46999999876543221111101111 122 23677778887653     48999998875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.50  E-value=0.83  Score=45.92  Aligned_cols=236  Identities=10%  Similarity=0.033  Sum_probs=122.6

Q ss_pred             CeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-------CCCCCeEEEEEcCC----CeEEEE-eC-------C
Q 006126          378 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQ----DLFAFG-FD-------D  435 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~----~~l~s~-~~-------d  435 (660)
                      ....++|.  |+.|+.+. .|.|++++.. +.....+.       ........++++|+    +.|... +.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            36788888  66244555 8999999853 43221111       22345689999995    433333 22       2


Q ss_pred             CeEEEEeCCCC--c--eeeE-eec------cCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCeee
Q 006126          436 SSILVHCPCTK--K--TKAK-LKG------HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKL  491 (660)
Q Consensus       436 ~~I~iwd~~~~--~--~~~~-~~~------~~~~v~~l~~sp~~~~l~s~s~-------------dg~i~vwd~~~~~~~  491 (660)
                      ..|..|++..+  .  .... +..      .......+.|.|||.+.++.+.             .|.|.-+|.... .-
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence            35766766533  1  1111 111      1122457999999966665433             245666666531 00


Q ss_pred             ece--------eeeeeeeccCCCCCCeEEEEEec-CCcEEEE--EecCcEEEEeCCCCce--------------------
Q 006126          492 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS--IHEGQIDVYEAPTLNH--------------------  540 (660)
Q Consensus       492 ~~~--------~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~--~~d~~i~iwd~~~~~~--------------------  540 (660)
                      ...        .......++.    ....++|+| +|.+.++  +.++.=.|.-+..+..                    
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~  252 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA  252 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred             CCCCCcCCCCCCccEEEEcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence            000        1111223443    477899999 6766665  2322222222222111                    


Q ss_pred             -----------eeeecCCCCCCCeEEEEEcc-------CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcc
Q 006126          541 -----------TSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE  602 (660)
Q Consensus       541 -----------~~~~~~~~~~~~v~~~~~s~-------dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~  602 (660)
                                 +..+   .+......++|..       +|+++++....+.|...++..++.......   .  .  ...
T Consensus       253 ~~~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~--~--~~~  322 (353)
T 2g8s_A          253 KGEIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---L--T--DRG  322 (353)
T ss_dssp             CBSSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---S--G--GGC
T ss_pred             cCCCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---c--c--CCC
Confidence                       0011   1123566778763       467777766778888888876654332211   0  0  111


Q ss_pred             cceEEEEEecCCCCEEEEEe-CCCeEEEEeC
Q 006126          603 LYPLVIAAHPLEPNRIALGL-TNGRVHVIEP  632 (660)
Q Consensus       603 v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~  632 (660)
                      ..+..+++.| ||.+.++.. .+|  +||.+
T Consensus       323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred             CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence            2355899999 888766543 344  44443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.48  E-value=0.21  Score=58.37  Aligned_cols=188  Identities=12%  Similarity=0.151  Sum_probs=114.7

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-CceeeEeecc----CCC
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNR  458 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~~~~~~----~~~  458 (660)
                      .+.+|.-...++.|+|+++...++.+.-.. .|.-=.|-.+.  -|+|   +..|+.|++.. ..+.+.+..|    ...
T Consensus        77 ~~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q  152 (1630)
T 1xi4_A           77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQ  152 (1630)
T ss_pred             cceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCe
Confidence            344444447899999999888777766544 34444554444  3443   45799999964 2445555444    456


Q ss_pred             eEEEEEeCCCCEEEEEe-------CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe--cCCcEEEE-Ee--
Q 006126          459 ITCLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IH--  526 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~-~~--  526 (660)
                      |..-..+++.++++..+       ..|.+.+|..+.+       +....+||.   +....+.+.  +....+.+ +.  
T Consensus       153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha---~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhH---hhhheeccCCCCCCceEEEEEEec
Confidence            66777788899877543       3477888888762       222455665   233233222  22222333 32  


Q ss_pred             --cCcEEEEeCCCC---cee------ee-ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126          527 --EGQIDVYEAPTL---NHT------SQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ  587 (660)
Q Consensus       527 --d~~i~iwd~~~~---~~~------~~-~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~  587 (660)
                        .+.++|.++...   .+.      .. +.+........++..|+.-..++.-+.-|.|++||+.||.++..
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence              268999988542   111      11 11111133445678888888888888999999999999987654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.38  E-value=0.82  Score=45.92  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=60.9

Q ss_pred             CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee--eEee---ccCCCeEEEEEeCC---CCEEEEEeC-C-----CcEE
Q 006126          416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK--AKLK---GHQNRITCLAYSLS---LNVLVSSGA-D-----AQLC  481 (660)
Q Consensus       416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~--~~~~---~~~~~v~~l~~sp~---~~~l~s~s~-d-----g~i~  481 (660)
                      ..-..++|.|+|.++++..++.|++++  +++..  ..+.   ........++|+|+   +..|.++.. .     +.|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            345689999999444456679999998  44321  1111   12456889999998   555544433 2     6788


Q ss_pred             EEEcCCCeeeeceee-eeee--eccCCCCCCeEEEEEecCCcEEEE
Q 006126          482 VWDAVGWKKLCSKFL-HSFQ--TGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       482 vwd~~~~~~~~~~~~-~~~~--~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      .|+...+.......+ ..+.  .+..   .....++|.|||.+.++
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence            888775322111111 1111  1111   13458999999976666

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.38  E-value=0.11  Score=52.72  Aligned_cols=146  Identities=14%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc------------e
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK------------T  448 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~------------~  448 (660)
                      |..++.+.++.||.-++......+.+...    ...+..+..+|+| +||..+ +..|.|..+..+.            .
T Consensus        32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q  110 (452)
T 3pbp_A           32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ  110 (452)
T ss_dssp             TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred             CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence            77888888899999888755555555533    2367889999999 666664 5678888776321            1


Q ss_pred             eeEeec------cCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee--eccCCCCCCeEEEEEec
Q 006126          449 KAKLKG------HQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ--TGLVPETTIVNHIQFHP  517 (660)
Q Consensus       449 ~~~~~~------~~~~v~~l~~sp---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp  517 (660)
                      .+.+.-      ...+|..+.|||   .+..|++-..|+.|++||+........ .+....  -+.......|.+++|.+
T Consensus       111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred             eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence            122221      246799999999   456899999999999999986322111 111000  01111114688999999


Q ss_pred             CCcEEEE-E--ecCcEEEE
Q 006126          518 DQIHLLS-I--HEGQIDVY  533 (660)
Q Consensus       518 ~~~~l~~-~--~d~~i~iw  533 (660)
                      ++-.|.+ .  .+|.|+-.
T Consensus       190 ~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TSSCEEEEECTTSCEEEEE
T ss_pred             CCcEEEEEecCCCCCEEEE
Confidence            8877776 4  45666543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.30  E-value=2  Score=48.19  Aligned_cols=321  Identities=11%  Similarity=0.035  Sum_probs=170.0

Q ss_pred             cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeee
Q 006126          271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE  350 (660)
Q Consensus       271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~  350 (660)
                      .+++..|..|+. +-+..+|..+    ..+..+...   ....|.++...++|...+ |+.+ -+.+++..+...     
T Consensus       199 d~~~~~lWigt~-~Gl~~~~~~~----~~~~~~~~l---~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~-----  263 (758)
T 3ott_A          199 DTTRQCVWIGTE-GYLFQYFPST----GQIKQTEAF---HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL-----  263 (758)
T ss_dssp             ETTTTEEEEEEE-EEEEEEETTT----TEEEEEEEE---EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC-----
T ss_pred             ECCCCEEEEEEC-CCCeEEcCCC----CeEEeccCC---CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE-----
Confidence            345565555554 3477777653    333322110   234688888888887544 4444 466666544432     


Q ss_pred             ccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc-------CCCCCeEEE
Q 006126          351 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYF  421 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~~~~~v~~v  421 (660)
                            ..+........  .   -....|.++... ...|..|. .| +.++....  ....+.       .....|.++
T Consensus       264 ------~~~~~~~~~~~--~---l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i  329 (758)
T 3ott_A          264 ------QHIIHDSRNIQ--S---LTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSL  329 (758)
T ss_dssp             ------EEECCCTTCTT--S---CSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEE
T ss_pred             ------EEEEcCCCCcC--c---CCcCeEEEEEEcCCCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEE
Confidence                  11111100000  0   123458888777 44555566 55 54443321  111111       123468888


Q ss_pred             EEcCCCeEEEEeCCCeEEEEeCCCCc--eeeEeec-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          422 ILLPQDLFAFGFDDSSILVHCPCTKK--TKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       422 ~~sp~~~l~s~~~d~~I~iwd~~~~~--~~~~~~~-------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      .-..+|.|..|+.+| +..++..+++  ....+..       ....|.++.-.++|+..+ |+ ++-+..||..+++...
T Consensus       330 ~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~  406 (758)
T 3ott_A          330 FRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIH  406 (758)
T ss_dssp             EECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEE
Confidence            887777555566554 6667665432  1122210       124588888777776554 55 4678999998754321


Q ss_pred             ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC-----cee---eeec--CCCCCCCeEEEEEccCC
Q 006126          493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-----NHT---SQLV--PDKMDLPITYATYSCDG  562 (660)
Q Consensus       493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~-----~~~---~~~~--~~~~~~~v~~~~~s~dg  562 (660)
                      ..... ......  ...|.++...++|...+.+..+.+.++|..+.     ...   ..+.  ..-....|.++..+++|
T Consensus       407 ~~~~~-~~~~~~--~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g  483 (758)
T 3ott_A          407 YNIVD-NTGTYN--TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEG  483 (758)
T ss_dssp             EEEEC-CC--CB--SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTS
T ss_pred             eecCC-CcCCCC--CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCC
Confidence            11000 000000  14688888888887666666677888886421     111   1111  11113468999999999


Q ss_pred             CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          563 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       563 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                      .+.+.++..+-|..+|..+++.... ...     +. .....+.++.... +|.+.+. +.+ -+..+++.+++
T Consensus       484 ~lWi~~~t~~Gl~~~d~~~~~~~~~-~~~-----~~-~~~~~~~~i~~d~-~g~lWig-t~~-Gl~~~~~~~~~  547 (758)
T 3ott_A          484 NVWVLLYNNKGIDKINPRTREVTKL-FAD-----EL-TGEKSPNYLLCDE-DGLLWVG-FHG-GVMRINPKDES  547 (758)
T ss_dssp             CEEEEETTCSSEEEEETTTTEEEEE-CTT-----TS-CGGGCEEEEEECT-TSCEEEE-ETT-EEEEECC--CC
T ss_pred             CEEEEccCCCCcEEEeCCCCceEEe-cCC-----Cc-CCCcccceEEECC-CCCEEEE-ecC-ceEEEecCCCc
Confidence            9777444445588899988765432 110     10 1112234666666 6766654 444 48888876654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.29  E-value=0.24  Score=49.47  Aligned_cols=115  Identities=14%  Similarity=-0.043  Sum_probs=66.2

Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---CcEEEE--E
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--I  525 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~--~  525 (660)
                      .+...-...+.|+|.|+|+++++--..|.|++++..++.......+..+.....   .....|+++|+   +.+|++  +
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~---~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGE---GGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTT---BSEEEEEECTTHHHHCEEEEEEE
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCC---CCceeeEeccccccCCEEEEEEe
Confidence            333334567899999999977766558999999876544211111111111112   46889999995   334443  3


Q ss_pred             --ecCcEEEEeCCCC----------cee-eeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126          526 --HEGQIDVYEAPTL----------NHT-SQLVPDKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       526 --~d~~i~iwd~~~~----------~~~-~~~~~~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                        .++.|.-|.+..+          +.+ ..+.. .....-..++|.|||.+.++.+
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence              3456766766542          111 11221 1122345799999998777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.036  Score=55.22  Aligned_cols=195  Identities=10%  Similarity=0.081  Sum_probs=102.4

Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCC--CCCeEEEEE--cC-CC-eEEEE-eCCCeEEEEeCCCCceeeEeec---
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFIL--LP-QD-LFAFG-FDDSSILVHCPCTKKTKAKLKG---  454 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~--~~~v~~v~~--sp-~~-~l~s~-~~d~~I~iwd~~~~~~~~~~~~---  454 (660)
                      +..++.++ ||.|.-+|..+|+...++...  ...+. ..-  .+ ++ .++.. +.||.|+.++..+|.....+..   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            45677777 999999999999999998754  22221 110  11 33 33333 6899999999988855433321   


Q ss_pred             -cCCCeEE---EEE-e----CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE---Ee--cCCc
Q 006126          455 -HQNRITC---LAY-S----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ---FH--PDQI  520 (660)
Q Consensus       455 -~~~~v~~---l~~-s----p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s--p~~~  520 (660)
                       ...++..   ... .    ..+..+++|+.+|.+...|+++|+.+...... ...++-.. ....|..   +.  ..+.
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~-~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG-SKNGYFGS-QSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT-CBCC---------------------CC
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC-CCcccccc-cccccccccccccccCCC
Confidence             1122221   001 0    13557888999999999999998866544332 11110000 0000111   10  1123


Q ss_pred             EEEE-EecCcEEEEeCCCCceeeeec-----CCCCCCCe-EEEEEccCCCEEEEEecCCeEEEEECCCCeeEE
Q 006126          521 HLLS-IHEGQIDVYEAPTLNHTSQLV-----PDKMDLPI-TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC  586 (660)
Q Consensus       521 ~l~~-~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~v-~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~  586 (660)
                      .++. ..+..+.+.+ ++|+ +-.+.     ......++ ..-..+.|+.+ +.++.||.|+-+|..+|+.+.
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            4444 4556666666 3443 21110     00000000 00001234666 457789999999998888776

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.24  E-value=0.65  Score=45.68  Aligned_cols=176  Identities=13%  Similarity=0.055  Sum_probs=86.2

Q ss_pred             EEEEECCCCeEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC--------CeEEEEeCCCCceee--EeeccCCCeEEEEE
Q 006126          397 ISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKA--KLKGHQNRITCLAY  464 (660)
Q Consensus       397 I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~-~l~s~~~d--------~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~  464 (660)
                      +..||..+.+-...-....... .+++.. ++ .++.|+.+        ..+.+||+.+.+-..  .+......- +++.
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~  146 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS  146 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE
Confidence            7888998876432211111111 122222 55 66666632        368999998764322  111111111 2222


Q ss_pred             eCCCCEEEEEeC-C-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEE
Q 006126          465 SLSLNVLVSSGA-D-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV  532 (660)
Q Consensus       465 sp~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~i  532 (660)
                       -+++.++.|+. +     ..+.+||..+.+-..   +...+...     .-.+++.. +++.++. |.+     ..+.+
T Consensus       147 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  216 (315)
T 4asc_A          147 -HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQTAR-----SLFGATVH-DGRIIVAAGVTDTGLTSSAEV  216 (315)
T ss_dssp             -ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCSSCC-----BSCEEEEE-TTEEEEEEEECSSSEEEEEEE
T ss_pred             -ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCCCch-----hceEEEEE-CCEEEEEeccCCCCccceEEE
Confidence             35667777765 2     468899998753211   11111111     11122222 5566665 433     25899


Q ss_pred             EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC--------------CeEEEEECCCCeeEE
Q 006126          533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRC  586 (660)
Q Consensus       533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d--------------g~I~iwd~~~~~~~~  586 (660)
                      ||+.+.+-...-...........+.  -++++++.|+.+              ..|.+||+.+.+-..
T Consensus       217 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          217 YSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             EECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence            9998765432211111111112222  366777777764              247788888775433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.11  E-value=1.2  Score=43.80  Aligned_cols=222  Identities=13%  Similarity=0.077  Sum_probs=109.6

Q ss_pred             CcEEEEECCCCeEEEE-EcCCCCCeEEEEEcCCC-eEEEEeC----CC-------eEEEEeCCCCceeeE--eeccCCCe
Q 006126          395 GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD----DS-------SILVHCPCTKKTKAK--LKGHQNRI  459 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp~~-~l~s~~~----d~-------~I~iwd~~~~~~~~~--~~~~~~~v  459 (660)
                      ..+..||..+.+.... +..............++ .++.|+.    ++       .+.+||..+++-...  +.......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            3488999988775442 22212222233344556 6777773    11       277889887643321  11111111


Q ss_pred             EEEEEeCCCCEEEEEeCC-------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-c---
Q 006126          460 TCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E---  527 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d---  527 (660)
                       +++.. +++.++.|+.+       ..+.+||..+.+-.....+.....+|        +++. .+++.++. |. +   
T Consensus       104 -~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          104 -GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH--------NVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             -EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC--------EEEE-ETTEEEEECCEESSSC
T ss_pred             -ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc--------EEEE-ECCEEEEEcCCCCCCC
Confidence             22222 66777777754       24788898874321111111011111        2222 35666665 33 1   


Q ss_pred             --CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          528 --GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       528 --~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                        ..+.+||..+.+-...-... ....-.+++. -+++.++.|+.+     ..+.+||+.+.+-... ..   .+...  
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r--  244 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TE---FPQER--  244 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CC---CSSCC--
T ss_pred             ccceEEEEcCCCCEEEECCCCC-CCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CC---CCCcc--
Confidence              35999999876543221111 1111112222 366777777654     3578899987653322 11   11111  


Q ss_pred             cccceEEEEEecCCCCEEEEEeCC--------------CeEEEEeCCCCceeccCC
Q 006126          601 LELYPLVIAAHPLEPNRIALGLTN--------------GRVHVIEPLESEVEWGKL  642 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l~s~s~D--------------g~v~iw~~~~~~~~w~~~  642 (660)
                        .....+.+   ++.+++.||.+              ..+.+||+.+.  .|...
T Consensus       245 --~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~  293 (318)
T 2woz_A          245 --SSISLVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM  293 (318)
T ss_dssp             --BSCEEEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE
T ss_pred             --cceEEEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh
Confidence              11112222   56777777754              35778888664  57655

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.09  E-value=0.36  Score=56.54  Aligned_cols=261  Identities=10%  Similarity=0.035  Sum_probs=143.5

Q ss_pred             CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC
Q 006126          284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS  363 (660)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  363 (660)
                      .+|.|-|+..+   ....+.       .-.--+.-.+|..+.+|.- ...++.|+++++...                  
T Consensus        48 ~~vvIidl~~~---~~~~rr-------pi~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~k------------------   98 (1630)
T 1xi4_A           48 AQVVIIDMNDP---SNPIRR-------PISADSAIMNPASKVIALK-AGKTLQIFNIEMKSK------------------   98 (1630)
T ss_pred             ceEEEEECCCC---CCcccc-------cccchhhccCCCcceEEEe-cCCeEEEeehHHhhh------------------
Confidence            36778888752   222211       1122334567777755544 367788887765543                  


Q ss_pred             CceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCC-CeEEEEEcCC----CCCeEEEEEcCCC-eEE-EEe--
Q 006126          364 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LFA-FGF--  433 (660)
Q Consensus       364 ~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~-~~~~~~~~~~----~~~v~~v~~sp~~-~l~-s~~--  433 (660)
                         ++..   ....+|..=.|- .+.|+-.++..|.-|++.. ..+.+.|..|    ...|.....+++. +++ +|-  
T Consensus        99 ---lks~---~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~  172 (1630)
T 1xi4_A           99 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  172 (1630)
T ss_pred             ---hccc---ccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence               1111   123345544555 8888889999999999964 3444445444    3456667778888 443 333  


Q ss_pred             ----CCCeEEEEeCCCCceeeEeeccCCCeEEEEEe--CC-CCEEEEEeC---CCcEEEEEcCCC-ee---eeceeeee-
Q 006126          434 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--LS-LNVLVSSGA---DAQLCVWDAVGW-KK---LCSKFLHS-  498 (660)
Q Consensus       434 ----~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s--p~-~~~l~s~s~---dg~i~vwd~~~~-~~---~~~~~~~~-  498 (660)
                          -.|.+.+|..+.+ ..+.+.||.+....+...  +. ...++.+..   .+.+.|.++... ..   ...+.+.- 
T Consensus       173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~  251 (1630)
T 1xi4_A          173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF  251 (1630)
T ss_pred             CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence                3468888887643 445566776554444332  11 122222222   268888888553 11   00111110 


Q ss_pred             eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                      .+.....  ....++..++.-..+.. ..-|.|++||+.++.++..-...  ..+|...+-+....=++.....|.|.-.
T Consensus       252 ~~~~~~~--Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~vnr~G~vl~v  327 (1630)
T 1xi4_A          252 FPPEAQN--DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV  327 (1630)
T ss_pred             CCccccc--CcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCCCCceEEEcCCceEEEE
Confidence            1111111  34556777776556655 78899999999999987655432  4445444444332233333366666655


Q ss_pred             ECCCCee
Q 006126          578 DTSTLEL  584 (660)
Q Consensus       578 d~~~~~~  584 (660)
                      .++...+
T Consensus       328 ~v~~~~i  334 (1630)
T 1xi4_A          328 CVEEENI  334 (1630)
T ss_pred             EEccchh
Confidence            5554443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.08  E-value=0.66  Score=45.48  Aligned_cols=176  Identities=10%  Similarity=0.014  Sum_probs=89.4

Q ss_pred             CcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCceeeE--eeccCCCeEEEEE
Q 006126          395 GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAY  464 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~~~~--~~~~~~~v~~l~~  464 (660)
                      ..+.+||+.+.+....-  .........+.+  ++ .++.|+.+     ..+.+||+.+.+-...  +......-..+.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            46889999876543321  111112222222  56 66666543     3688999887643221  1111111122222


Q ss_pred             eCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEEE
Q 006126          465 SLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVY  533 (660)
Q Consensus       465 sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~iw  533 (660)
                        +++.++.|+.+     ..+.+||+.+.+-..   +.......     .-.+++.. +++.++. |.+     ..+.+|
T Consensus       168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIR-----SGAGVCVL-HNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             --TTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSSCC-----BSCEEEEE-TTEEEEECCBCSSSBCCCEEEE
T ss_pred             --CCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCCcc-----ccceEEEE-CCEEEEEeCCCCCCccceEEEE
Confidence              66777777654     458899988754211   11111111     11122222 5666665 333     569999


Q ss_pred             eCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeE
Q 006126          534 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR  585 (660)
Q Consensus       534 d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~  585 (660)
                      |+.+.+-...-......... +++. -++++++.|+.+     ..+.+||+.+.+-.
T Consensus       237 d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          237 DVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             eCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            99876543221111111111 2222 367777777754     45888998876533

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.07  E-value=0.68  Score=46.44  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=44.3

Q ss_pred             CCEEEEEe--CCcEEEEECCC--CeEE--EEEc-CCCCCeEEEEEcCCC-eEEEEeC-C---------CeEEEEeCCCCc
Q 006126          386 GSHLFSAS--GGKISIFSLET--FQTL--ATFA-NPPPIATYFILLPQD-LFAFGFD-D---------SSILVHCPCTKK  447 (660)
Q Consensus       386 ~~~l~s~~--dg~I~iwd~~~--~~~~--~~~~-~~~~~v~~v~~sp~~-~l~s~~~-d---------~~I~iwd~~~~~  447 (660)
                      +..++.|+  ...+.+||+.+  .+..  ..+. .......++.+  ++ +++.|+. +         ..+.+||+.+.+
T Consensus        20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            55555665  46899999864  2222  1122 11111222222  56 6666665 2         368999998764


Q ss_pred             eeeE--ee-ccCCCeEEEEEeCCCCEEEEEeCC
Q 006126          448 TKAK--LK-GHQNRITCLAYSLSLNVLVSSGAD  477 (660)
Q Consensus       448 ~~~~--~~-~~~~~v~~l~~sp~~~~l~s~s~d  477 (660)
                      -...  +. .....-.++ . .+++.++.|+.+
T Consensus        98 W~~~~~~~p~~r~~~~~~-~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTF-V-HNGKAYVTGGVN  128 (357)
T ss_dssp             EEECSCCCSSCCSSEEEE-E-ETTEEEEEECCC
T ss_pred             EEECCCCCCcccccceEE-E-ECCEEEEEeCcC
Confidence            3221  11 111111222 2 467788888765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.94  E-value=0.12  Score=47.50  Aligned_cols=149  Identities=13%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             CeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee------eEee--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 006126          417 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTK------AKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW  488 (660)
Q Consensus       417 ~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~------~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~  488 (660)
                      .+..++|+|+|.|... .+|.++-.+..+....      ..+-  +... ..++.|.|+|.+.++  .||.|.-++--+.
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            5669999998833333 7777777776553221      1110  1111 478889999988777  5699887775331


Q ss_pred             eeeeceeeeeee-eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCcee-----eeecCCCCCCCeEEEEEccCC
Q 006126          489 KKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT-----SQLVPDKMDLPITYATYSCDG  562 (660)
Q Consensus       489 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg  562 (660)
                      .......-.+.. .+--   ..+..+.|.|+|.+.++. |+.++-....++...     .+..+...-.....+.|.++|
T Consensus       118 ~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             TTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             CCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            111000000011 1111   257899999999998888 888654443322110     111111112234446688888


Q ss_pred             CEEEEEecCCeEE
Q 006126          563 KCIYVSCKSGHVK  575 (660)
Q Consensus       563 ~~l~sg~~dg~I~  575 (660)
                      .+.++.  +|.++
T Consensus       194 ~l~~v~--~g~~Y  204 (236)
T 1tl2_A          194 TLFGVQ--GGKFY  204 (236)
T ss_dssp             CEEEEE--TTEEE
T ss_pred             cEEEEe--CCeEE
Confidence            777665  66443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.87  E-value=0.63  Score=46.83  Aligned_cols=146  Identities=11%  Similarity=0.006  Sum_probs=80.6

Q ss_pred             CCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc-eeeEe---eccCCCeEEEEEeCC---CCEEEEEeC----C----Cc
Q 006126          415 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKL---KGHQNRITCLAYSLS---LNVLVSSGA----D----AQ  479 (660)
Q Consensus       415 ~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~-~~~~~---~~~~~~v~~l~~sp~---~~~l~s~s~----d----g~  479 (660)
                      -.....++|.|+|.|+++..++.|+++| .+++ .+..+   .........|+++|+   +..|.++..    +    ..
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3456789999999555556679999997 3454 22211   112356889999997   445544433    3    56


Q ss_pred             EEEEEcCCC--eeeeceee-eeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-------------CcEEEEeCCCCce--
Q 006126          480 LCVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------GQIDVYEAPTLNH--  540 (660)
Q Consensus       480 i~vwd~~~~--~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-------------~~i~iwd~~~~~~--  540 (660)
                      |..|+....  .......+ ..+..+..   .....++|.|||.+.++ +..             +.|..+|.. ++.  
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~---h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~  182 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYI---HNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA  182 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSS---CCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCC---cCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence            777887653  11111111 11121111   13457999999987776 321             356666653 321  


Q ss_pred             ------eeeecCCCCCCCeEEEEEcc-CCCEEEE
Q 006126          541 ------TSQLVPDKMDLPITYATYSC-DGKCIYV  567 (660)
Q Consensus       541 ------~~~~~~~~~~~~v~~~~~s~-dg~~l~s  567 (660)
                            ...+.. . -.....++|+| +|.++++
T Consensus       183 ~npf~~~~i~a~-G-~rnp~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          183 DNPFPNSPIWSY-G-HRNPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             TSSSTTCCEEEE-C-CSCCCEEEECTTTCCEEEE
T ss_pred             CCCCCCCcEEEE-c-cCCcceEEEeCCCCCEEEE
Confidence                  111111 1 23356899999 6665554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.78  E-value=0.22  Score=45.77  Aligned_cols=143  Identities=8%  Similarity=-0.049  Sum_probs=82.0

Q ss_pred             eEEEEeCCCeEEEEeCCCCce------eeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126          428 LFAFGFDDSSILVHCPCTKKT------KAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ  500 (660)
Q Consensus       428 ~l~s~~~d~~I~iwd~~~~~~------~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  500 (660)
                      +|+....| +++.=.+.++..      ..++-. -=..+..++|+|+|.+.++  .+|.+.-.+..+..........+..
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I   82 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI   82 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence            56667777 666665554431      122211 1236779999999986666  6777666665442111100111001


Q ss_pred             e--ccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee-----eecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126          501 T--GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS-----QLVPDKMDLPITYATYSCDGKCIYVSCKSGH  573 (660)
Q Consensus       501 ~--~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~  573 (660)
                      .  +-    ..-..+.|.|+|.+.++ .||.|+-++-.+...-.     +..+..--..+..+.|.|+|.+.++.  |+.
T Consensus        83 G~~Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~  155 (236)
T 1tl2_A           83 GNGGW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ  155 (236)
T ss_dssp             ECSCG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             ccccc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence            0  11    12368999999998888 77999888864322111     11110012467899999999888777  787


Q ss_pred             EEEEECC
Q 006126          574 VKVFDTS  580 (660)
Q Consensus       574 I~iwd~~  580 (660)
                      ++-+...
T Consensus       156 lyr~~~P  162 (236)
T 1tl2_A          156 FYKALPP  162 (236)
T ss_dssp             EEEECCC
T ss_pred             EEecCCC
Confidence            6544333

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.58  E-value=1.3  Score=44.28  Aligned_cols=59  Identities=3%  Similarity=-0.101  Sum_probs=30.8

Q ss_pred             cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC------eEEEEECCCCeeEEEee
Q 006126          529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG------HVKVFDTSTLELRCQIN  589 (660)
Q Consensus       529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg------~I~iwd~~~~~~~~~~~  589 (660)
                      .+.+||+.+.+-...-........  ..+...++++++.|+.++      .|.++++++++.+....
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            578999887653322111111111  222335778888888653      46677888887766544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.58  E-value=1.6  Score=42.82  Aligned_cols=176  Identities=9%  Similarity=0.016  Sum_probs=86.3

Q ss_pred             EEEEECCCCeEEEE--EcCCCCCeEEEEEcCCC-eEEEEeCC-------CeEEEEeCCCCceeeE--eeccCCCeEEEEE
Q 006126          397 ISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTKAK--LKGHQNRITCLAY  464 (660)
Q Consensus       397 I~iwd~~~~~~~~~--~~~~~~~v~~v~~sp~~-~l~s~~~d-------~~I~iwd~~~~~~~~~--~~~~~~~v~~l~~  464 (660)
                      +..||..+.+-...  +.........+.+  ++ .++.|+.+       ..+.+||+.+.+-...  +......- +++.
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE
Confidence            77889887654332  1111112222222  56 66666653       2588899887643321  11111111 1222


Q ss_pred             eCCCCEEEEEeC------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEE
Q 006126          465 SLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV  532 (660)
Q Consensus       465 sp~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~i  532 (660)
                       .+++.++.|+.      -..+.+||+.+.+-.   .+.......     .-.+++.. +++.++. |.+     ..+.+
T Consensus       157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  226 (318)
T 2woz_A          157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMKTPR-----SMFGVAIH-KGKIVIAGGVTEDGLSASVEA  226 (318)
T ss_dssp             -ETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCSSCC-----BSCEEEEE-TTEEEEEEEEETTEEEEEEEE
T ss_pred             -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCCCCc-----ccceEEEE-CCEEEEEcCcCCCCccceEEE
Confidence             36677777764      235899999875321   111111111     11122332 4555555 432     35889


Q ss_pred             EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC--------------CeEEEEECCCCeeEEE
Q 006126          533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRCQ  587 (660)
Q Consensus       533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d--------------g~I~iwd~~~~~~~~~  587 (660)
                      ||+.+.+-...-......... +++ ..++++++.|+.+              ..+.+||+.+.+-...
T Consensus       227 yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          227 FDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            999876543221111111111 222 2356777777654              3588889887654433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.55  E-value=2.1  Score=44.56  Aligned_cols=111  Identities=13%  Similarity=0.027  Sum_probs=63.3

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee--ccCCCCCCeEEEEEecC---CcEEEEE--e--
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHPD---QIHLLSI--H--  526 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~---~~~l~~~--~--  526 (660)
                      -...+.|+|.|+|+++++-...+.|++++..++.......+.....  ...   .....|+|+|+   +..|+++  .  
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~---~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQ---NGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSS---CSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCC---CceeEEEECCCcCcCCEEEEEEeccc
Confidence            3456799999999877765444578888865543211111111110  011   46789999995   5555542  2  


Q ss_pred             ----------cCcEEEEeCCCC-------ceee-eecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126          527 ----------EGQIDVYEAPTL-------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       527 ----------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                                ...|..|+...+       +.+. .+.. ........++|.|||.+.++.+.
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence                      235666665322       1111 1222 11345788999999987776543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.16  E-value=1.6  Score=45.43  Aligned_cols=107  Identities=13%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee--eEeec------cCCCeEEEEEeCC---CCEEEEEeC------
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKLKG------HQNRITCLAYSLS---LNVLVSSGA------  476 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~--~~~~~------~~~~v~~l~~sp~---~~~l~s~s~------  476 (660)
                      -...+.++|.|+| ++++-...+.|++++..+++..  ..+..      .......|+|+|+   +..|.....      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            3456799999999 5554433347998886655432  22221      2456779999995   445444332      


Q ss_pred             -------CCcEEEEEcCCC--eeeeceeee-eeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          477 -------DAQLCVWDAVGW--KKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       477 -------dg~i~vwd~~~~--~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                             ...|.-|+...+  .......+- .+.....   .....|+|.|||.+.++
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~  160 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYT  160 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEE
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEE
Confidence                   235666665432  111111111 1111111   34788999999987776

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.09  E-value=0.71  Score=46.42  Aligned_cols=107  Identities=8%  Similarity=-0.046  Sum_probs=58.7

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee---eeeccCCCCCCeEEEEEecC---CcEEEE--Ee--
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPD---QIHLLS--IH--  526 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~---~~~l~~--~~--  526 (660)
                      .....|+|.|+|+.|+++...|.|++++... ...  ..+..   +.....   .....++++|+   +..|++  ..  
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~--~~~~~~~~v~~~g~---~g~~gia~~pdf~~~g~lYv~~~~~~   91 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLS--APLSGVPDVWAHGQ---GGLLDVVLAPDFAQSRRIWLSYSEVG   91 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EEC--CCCBSCCCCCCSTT---CSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-cee--eEecCCcccccCCC---CCceeEEECCCCCCCCEEEEEEeCCC
Confidence            3568899999998344556789999998543 211  11110   111111   35789999996   444444  22  


Q ss_pred             -----cCcEEEEeCCCC--c--eeee----ecC-CCCCCCeEEEEEccCCCEEEEEe
Q 006126          527 -----EGQIDVYEAPTL--N--HTSQ----LVP-DKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       527 -----d~~i~iwd~~~~--~--~~~~----~~~-~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                           ...|..|++...  .  ....    +.. ......-..++|.|||.+.++.+
T Consensus        92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence                 235777776432  1  1111    111 00112235799999996555543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.07  E-value=1.8  Score=43.10  Aligned_cols=152  Identities=13%  Similarity=0.051  Sum_probs=83.5

Q ss_pred             EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee--eEe----eccCCCeEEEEEeCC---CCEEEEE-e--C
Q 006126          410 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKL----KGHQNRITCLAYSLS---LNVLVSS-G--A  476 (660)
Q Consensus       410 ~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~--~~~----~~~~~~v~~l~~sp~---~~~l~s~-s--~  476 (660)
                      .+...-..-+.++|.|+| ++++--..|.|++++..+++..  ..+    .........|+++|+   +..|... +  .
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            333444556799999999 6555544899999987665432  111    123456889999995   3344432 2  3


Q ss_pred             CCcEEEEEcCCCe-----eeecee-eeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-------------cCcEEEEeCC
Q 006126          477 DAQLCVWDAVGWK-----KLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-------------EGQIDVYEAP  536 (660)
Q Consensus       477 dg~i~vwd~~~~~-----~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-------------d~~i~iwd~~  536 (660)
                      ++.|.-|.+..+.     ...... +..+..+..   .....++|.|||.+.++ +.             .+.|.-.+..
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~---H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVI---HNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSS---CCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCC---ccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence            4566666665421     111111 111111111   23457999999987776 42             2445555543


Q ss_pred             CCce--------eeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126          537 TLNH--------TSQLVPDKMDLPITYATYSCDGKCIYV  567 (660)
Q Consensus       537 ~~~~--------~~~~~~~~~~~~v~~~~~s~dg~~l~s  567 (660)
                       ++.        ...+.. .| .....++|+|+|.+.++
T Consensus       183 -G~ip~~nPf~~~~i~a~-G~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          183 -GEPAPGNPFPGSPVYSY-GH-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             -SSBCTTCSSTTCCEEEB-CC-SBCCEEEECTTCCEEEE
T ss_pred             -CCccCCCCCCCCeEEee-CC-CCcceEEECCCCCEEEE
Confidence             221        011111 22 33557899998876654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.91  E-value=3.1  Score=40.62  Aligned_cols=242  Identities=6%  Similarity=0.012  Sum_probs=122.0

Q ss_pred             EecCCCCEEEEEeC--CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCc----EEEEeccC
Q 006126          269 TSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT----HKLWKWQS  342 (660)
Q Consensus       269 ~~spdg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~----i~vw~~~~  342 (660)
                      -|+++|.+|+....  ++.+...+.++    .....+.      .+  .+--++++|.+|+.+.....    ..+|..  
T Consensus        20 ~~~~~g~~iy~~n~~d~~~ly~~~~dg----~~~~~l~------~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~--   85 (302)
T 3s25_A           20 LFCESDGEVFFSNTNDNGRLYAMNIDG----SNIHKLS------ND--TAMYINADKNYVYYVRNNNQKITSQTFFSY--   85 (302)
T ss_dssp             CEEEETTEEEEEEGGGTTEEEEEETTS----CSCEEEE------EE--EEEEEEECSSEEEEEEECC------CCSSC--
T ss_pred             EEEEeCCEEEEEeCCCCceEEEEcCCC----CCCEEcc------CC--ceeeEEEcCCEEEEEECCCCcccccceecc--
Confidence            45678888887753  34444444442    2233321      12  23456899999988865321    011100  


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe---C--CcEEEEECCCCeEEEEEcCCCCC
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS---G--GKISIFSLETFQTLATFANPPPI  417 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~---d--g~I~iwd~~~~~~~~~~~~~~~~  417 (660)
                               ....+...+..++.....     .......++..+++|+-..   +  ..|...++... ....+..+.. 
T Consensus        86 ---------n~~~Iy~i~~dg~~~~~l-----~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~-  149 (302)
T 3s25_A           86 ---------DRNSLCRIKRNGHGSTVL-----DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL-  149 (302)
T ss_dssp             ---------CSEEEEEEETTSCCCEEE-----ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC-
T ss_pred             ---------CCCeEEEEeCCCCcceEe-----ecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc-
Confidence                     011112233333321111     1122223333377776654   3  45666676643 3344443322 


Q ss_pred             eEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCeeeec
Q 006126          418 ATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCS  493 (660)
Q Consensus       418 v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--g~i~vwd~~~~~~~~~  493 (660)
                         ..+++++ .|+-.+ ....|.+.++..+.....+.   +... ..++|++.+|+....+  ..|..-++.....   
T Consensus       150 ---~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~---  219 (302)
T 3s25_A          150 ---FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP---  219 (302)
T ss_dssp             ---CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC---
T ss_pred             ---eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe---
Confidence               3457778 555444 36789999987665443333   2222 2366999998877654  3566666665321   


Q ss_pred             eeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe---cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126          494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg  568 (660)
                      ..    ...     ..+  ..|+|++.+|+.+.   .+.|...++ +|...+.+..    ..+.  .+++.+.+|+-.
T Consensus       220 ~~----Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~-DG~~r~~l~~----~~~~--~i~i~~d~Iy~t  279 (302)
T 3s25_A          220 VV----LTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKN-DGTGFKELAK----GEFC--NINVTSQYVYFT  279 (302)
T ss_dssp             EE----CSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEET-TSCCCEEEEE----SCEE--EEEECSSEEEEE
T ss_pred             EE----EeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEEC-CCCccEEeeC----Cccc--eEEEeCCEEEEE
Confidence            11    111     233  34788898887642   356777777 4444444432    1233  334455555544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.72  E-value=2.1  Score=47.44  Aligned_cols=195  Identities=11%  Similarity=0.069  Sum_probs=101.5

Q ss_pred             CCEEEEEe-C----CcEEEEECCCCeEEEEE-c-----CCC-CCeEEEEEcC-CC-eEEEEeCCC------eEEEEeCCC
Q 006126          386 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPP-PIATYFILLP-QD-LFAFGFDDS------SILVHCPCT  445 (660)
Q Consensus       386 ~~~l~s~~-d----g~I~iwd~~~~~~~~~~-~-----~~~-~~v~~v~~sp-~~-~l~s~~~d~------~I~iwd~~~  445 (660)
                      +..++.|+ +    ..+.+||..+++....- .     ... ..-.+++..+ ++ .++.|+.++      .+.+||+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            66666666 3    46889998887654433 1     111 1112333333 67 777776443      588999887


Q ss_pred             CceeeE--eeccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-Cc
Q 006126          446 KKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QI  520 (660)
Q Consensus       446 ~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~  520 (660)
                      .+-...  +..... -.+++...+++.++.|+.++  .+.+||..+..-.........+...    .....+.+..+ ++
T Consensus       478 ~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          478 REWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTE
T ss_pred             CcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCE
Confidence            543221  111111 12233324788888887655  6899999885421111100011111    12223555655 55


Q ss_pred             EEEEE-e--c-----CcEEEEeCCCCce-----eeeecC-CCCCCCeEEEEEccCCCEEEEEecC--------CeEEEEE
Q 006126          521 HLLSI-H--E-----GQIDVYEAPTLNH-----TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--------GHVKVFD  578 (660)
Q Consensus       521 ~l~~~-~--d-----~~i~iwd~~~~~~-----~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~d--------g~I~iwd  578 (660)
                      .++.| .  +     +.+.+||+.+...     -..+.. ......-.+++...++++++.|+.+        ..|.+||
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            55554 3  2     3589999987761     111111 0001111123333447777777753        4699999


Q ss_pred             CCCCeeE
Q 006126          579 TSTLELR  585 (660)
Q Consensus       579 ~~~~~~~  585 (660)
                      +.+.+-.
T Consensus       633 ~~t~~W~  639 (695)
T 2zwa_A          633 PLSETLT  639 (695)
T ss_dssp             TTTTEEE
T ss_pred             CCCCeEE
Confidence            9987644

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.65  E-value=5.2  Score=42.08  Aligned_cols=244  Identities=9%  Similarity=0.046  Sum_probs=132.7

Q ss_pred             EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC--C--------ceeee--cccCCCCCCeEEEEEe-----CCE
Q 006126          326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS--K--------LVMTN--DIAADPKDSISCFALR-----GSH  388 (660)
Q Consensus       326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~--~~~~~h~~~v~~v~~s-----~~~  388 (660)
                      +.+|+..|.++|+-+.+.+....       +-+|.+..  |        .++..  .+..| ..--..+.+.     |++
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~-------IpVF~~~~~~G~G~t~esk~il~~~~~~~~g-D~HHp~~S~tdg~yDGry  144 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMR-------IPVFNVDSATGWGLTNESRHIMGDSAKFLNG-DCHHPHISMTDGKYDGKY  144 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEE-------ECSSSCCTTTCTTTBHHHHHHHGGGGGCCCC-CCCCCEEEEETTEEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEE-------eecccCCCCcccCCchhHHHHHhcCCCccCC-CcCCCcccccCCeeeeEE
Confidence            56777789999999888876433       11222211  1        11110  00001 0111234444     778


Q ss_pred             EEEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEc--CCC-eEEEEeCC-------CeE------------EEEeC
Q 006126          389 LFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILL--PQD-LFAFGFDD-------SSI------------LVHCP  443 (660)
Q Consensus       389 l~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~s--p~~-~l~s~~~d-------~~I------------~iwd~  443 (660)
                      |+...  ...|-..++...++-+.+. .....+..+.+-  |+. ++++++..       |..            ...|.
T Consensus       145 lfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~  224 (638)
T 3sbq_A          145 LFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDA  224 (638)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEET
T ss_pred             EEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcC
Confidence            88887  5789999999999887776 445677788876  555 77777643       221            01122


Q ss_pred             CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEEcCC-------Ce--eeeceeeeee
Q 006126          444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDAVG-------WK--KLCSKFLHSF  499 (660)
Q Consensus       444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---------------~i~vwd~~~-------~~--~~~~~~~~~~  499 (660)
                      .+.+....+. -.+....+...++|++.++.+.+.               .+.++++..       |+  .+....+. +
T Consensus       225 ~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~-V  302 (638)
T 3sbq_A          225 ETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTP-V  302 (638)
T ss_dssp             TTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCC-E
T ss_pred             CccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCee-E
Confidence            2222211111 012223344567777777665432               244554421       11  00000011 1


Q ss_pred             eeccC------------CCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCC------ce-------eeeecCCCCCCC
Q 006126          500 QTGLV------------PETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL------NH-------TSQLVPDKMDLP  552 (660)
Q Consensus       500 ~~~~~------------~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~------~~-------~~~~~~~~~~~~  552 (660)
                      ..+..            |.......+.++|||++++++  .+.++.++|++..      +.       +....   -.-.
T Consensus       303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e---~GlG  379 (638)
T 3sbq_A          303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE---LGLG  379 (638)
T ss_dssp             EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB---CCSC
T ss_pred             EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc---CCCc
Confidence            11100            001345678899999999994  6789999998742      11       11221   2456


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      ....+|+++|.-..+-.-|..|.-|++...
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            778999999944445557999999998753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.76  E-value=3.9  Score=45.24  Aligned_cols=198  Identities=11%  Similarity=0.034  Sum_probs=102.0

Q ss_pred             CCC-eEEEEeCC----CeEEEEeCCCCceeeEe-e------ccCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEc
Q 006126          425 PQD-LFAFGFDD----SSILVHCPCTKKTKAKL-K------GHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDA  485 (660)
Q Consensus       425 p~~-~l~s~~~d----~~I~iwd~~~~~~~~~~-~------~~~~~v~~l~~sp-~~~~l~s~s~d------g~i~vwd~  485 (660)
                      .++ .++.|+.+    ..+.+||+.+++-...- .      .....-.+++..+ +++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            345 66666643    46888998876543322 1      0111112333443 77777777754      35788998


Q ss_pred             CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec--CcEEEEeCCCCceeeeec---CCCCCCCeEEEEEc
Q 006126          486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--GQIDVYEAPTLNHTSQLV---PDKMDLPITYATYS  559 (660)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d--~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s  559 (660)
                      .+.+-.   .+...+...     .-.+++...+++.++. |.+  +.+.+||..+..-...-.   .......-..+.+.
T Consensus       476 ~t~~W~---~~~~~p~~R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          476 KTREWS---MIKSLSHTR-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             TTTEEE---ECCCCSBCC-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred             CCCcEE---ECCCCCCCc-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence            884321   111111111     1123334346777776 433  279999998765432211   00012222335556


Q ss_pred             cC-CCEEEEEec--C-----CeEEEEECCCCee-----EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC--
Q 006126          560 CD-GKCIYVSCK--S-----GHVKVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN--  624 (660)
Q Consensus       560 ~d-g~~l~sg~~--d-----g~I~iwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D--  624 (660)
                      .+ ++.++.|+.  +     +.+.+||+.+.+-     -..+......+.      ....++.+ . ++.+++.||.+  
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R------~~~~~~~~-~-~~~iyv~GG~~~~  619 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR------YGSQIKYI-T-PRKLLIVGGTSPS  619 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC------BSCEEEEE-E-TTEEEEECCBCSS
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc------ccceEEEe-C-CCEEEEECCccCC
Confidence            55 667777776  2     4689999988761     111211111111      11112332 2 36788888743  


Q ss_pred             ------CeEEEEeCCCCceecc
Q 006126          625 ------GRVHVIEPLESEVEWG  640 (660)
Q Consensus       625 ------g~v~iw~~~~~~~~w~  640 (660)
                            ..|.+||+.+.  .|.
T Consensus       620 ~~~~~~~~v~~yd~~t~--~W~  639 (695)
T 2zwa_A          620 GLFDRTNSIISLDPLSE--TLT  639 (695)
T ss_dssp             CCCCTTTSEEEEETTTT--EEE
T ss_pred             CCCCCCCeEEEEECCCC--eEE
Confidence                  45899999875  465

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.38  E-value=5.4  Score=38.37  Aligned_cols=222  Identities=11%  Similarity=0.019  Sum_probs=115.1

Q ss_pred             CeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126          378 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ  456 (660)
Q Consensus       378 ~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~  456 (660)
                      .|..++.. ...++.. ||.|..|-......+..-......|..++......++. . ||.|+.|-....-.+..-..-.
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~  101 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEAR  101 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGS
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccC
Confidence            56666666 4445554 99999998654221111111123566666655443333 4 8999999865422111111123


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  536 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~  536 (660)
                      ..|..++...+  ..+.-. ||.|+.|-....-..   .+.   ....   ..|..++...+... +.. ||.|+.|-..
T Consensus       102 ~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gql---g~~---~~~~---~~i~~i~~G~~~~~-~l~-~G~v~~wG~n  167 (282)
T 3qhy_B          102 SGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQT---TVP---AEAQ---SGVTALDGGVYTAL-AVK-NGGVIAWGDN  167 (282)
T ss_dssp             SSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTT---SCC---GGGG---SSEEEEEECSSEEE-EEE-TTEEEEEECC
T ss_pred             CCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcC---CCC---ccCC---CCeEEEEcccCEEE-EEE-CCEEEEecCC
Confidence            46777776543  333445 999999987652111   111   1111   35666665543322 224 7889999765


Q ss_pred             CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      ....+.. .. .....|..++...+.. ++.  .||.|+.|-....-.+.. ...     .  ...  +..++-..  ..
T Consensus       168 ~~gqlg~-p~-~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-p~~-----~--~~~--v~~i~~G~--~h  230 (282)
T 3qhy_B          168 YFGQTTV-PA-EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-PTE-----A--LSG--VSAIASGE--WY  230 (282)
T ss_dssp             TTSTTSC-CG-GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-CGG-----G--GSS--CCEEEECS--SC
T ss_pred             CCCCCCC-ce-ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-Ccc-----c--CCC--ceEEEcCC--CE
Confidence            4222111 10 1135677777654332 333  599999997654321111 100     0  112  33566544  23


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q 006126          617 RIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~  635 (660)
                      .++..  ||.|+.|--...
T Consensus       231 ~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          231 SLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             EEEEE--TTEEEEESTTCC
T ss_pred             EEEEE--CCEEEEecCCCC
Confidence            44443  999999987654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.09  E-value=6.9  Score=38.06  Aligned_cols=158  Identities=13%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV  470 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  470 (660)
                      .|+..++..++... +....    +..|++++ .|+-..    ....|+..++.. .....+..+..    ..|+|+++.
T Consensus        89 ~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~  158 (302)
T 3s25_A           89 SLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRY  158 (302)
T ss_dssp             EEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTE
T ss_pred             eEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCE
Confidence            56777776654332 22111    23677888 666554    345677777764 34444544432    356788888


Q ss_pred             EEEEeC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec--CcEEEEeCCCCceeeeecC
Q 006126          471 LVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE--GQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       471 l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~  546 (660)
                      |+..+. ...|.+.++..+..   ..   +..+      .. ...++|++.+|+-. .+  ..|..-++.... ...+. 
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~---~~---l~~~------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-  223 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSE---AL---FYDC------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT-  223 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEE---EE---EECS------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-
T ss_pred             EEEEeCCCceEEEEECCCCCE---EE---EeCC------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-
Confidence            887765 57888888877432   11   2221      12 23467999998874 22  367777775433 34443 


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEec--CCeEEEEECCCCe
Q 006126          547 DKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLE  583 (660)
Q Consensus       547 ~~~~~~v~~~~~s~dg~~l~sg~~--dg~I~iwd~~~~~  583 (660)
                         ...+  ..|+|++++|+-+..  .+.|..-++....
T Consensus       224 ---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          224 ---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             ---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             ---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence               2233  348889999886633  3567777776443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.54  E-value=12  Score=37.46  Aligned_cols=185  Identities=10%  Similarity=0.076  Sum_probs=101.6

Q ss_pred             cEEEEECCCC--eEEEEEcCC------CCCeEEEEEc---CC----C--eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126          396 KISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR  458 (660)
Q Consensus       396 ~I~iwd~~~~--~~~~~~~~~------~~~v~~v~~s---p~----~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~  458 (660)
                      .|.+||+.++  +.++++.-.      ...+..+.+.   |+    +  ..++-+...-|.|+|+.+++.-+.+  |.. 
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~-  200 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT-  200 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence            5778999998  888877532      3356777777   22    3  3444456778999999998877655  321 


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC----CcEEEEEecCcEEEEe
Q 006126          459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSIHEGQIDVYE  534 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~d~~i~iwd  534 (660)
                           |.|+.....+  .+|.-.             .+.          ..+..|+++|+    ++.|..+.=..-++|.
T Consensus       201 -----~~pd~~~~~~--i~G~~~-------------~~~----------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~  250 (381)
T 3q6k_A          201 -----FKAERPTKFD--YGGKEY-------------EFK----------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS  250 (381)
T ss_dssp             -----GSCCSCEEEE--ETTEEE-------------EEC----------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred             -----CccccCcceE--ECCEEe-------------Eec----------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence                 3454111111  122111             111          35788999987    7777764222223333


Q ss_pred             CC-----CC---ceeeeecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEECCC-C---eeEEEeecccccCCCCcCc
Q 006126          535 AP-----TL---NHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTST-L---ELRCQINLTAYAQPGTISL  601 (660)
Q Consensus       535 ~~-----~~---~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd~~~-~---~~~~~~~~~~~~~~gh~~~  601 (660)
                      +.     +.   ..++.+-.......-..++++ .+|.+.++--+.+.|..|+..+ .   +....+...        ..
T Consensus       251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d--------~~  322 (381)
T 3q6k_A          251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS--------SR  322 (381)
T ss_dssp             EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC--------TT
T ss_pred             EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC--------CC
Confidence            22     21   122222111001334456775 6777777777789999999876 1   112222211        22


Q ss_pred             ccceEEEEEecCCCCEEEEEe
Q 006126          602 ELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       602 ~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      -+++..+++.+ ++.+.+.++
T Consensus       323 l~~pd~~~i~~-~g~Lwv~sn  342 (381)
T 3q6k_A          323 FVFGTDISVDS-KGGLWFMSN  342 (381)
T ss_dssp             CCSEEEEEECT-TSCEEEEEC
T ss_pred             ccccCeEEECC-CCeEEEEEC
Confidence            24455777766 566655553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.52  E-value=1.5  Score=46.08  Aligned_cols=125  Identities=10%  Similarity=-0.004  Sum_probs=76.2

Q ss_pred             eEEEEeCCC----CceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeee-------ecee-eeeeeecc
Q 006126          437 SILVHCPCT----KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKL-------CSKF-LHSFQTGL  503 (660)
Q Consensus       437 ~I~iwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~-------~~~~-~~~~~~~~  503 (660)
                      .|.+.|.+.    +..+..+-.-......+.++|||+++++++. +.++.++|++.-...       .... ......| 
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence            367777765    3333333334445667889999999887764 789999999852110       0000 1111122 


Q ss_pred             CCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCC----------ceeeeecCCCCCCCeEEEEE------ccCCCEE
Q 006126          504 VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL----------NHTSQLVPDKMDLPITYATY------SCDGKCI  565 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~------s~dg~~l  565 (660)
                          -.....+|.++| ..+++  -|..|..|++...          ..+..+..   ...+-.+.-      .|||+||
T Consensus       378 ----lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv---~YqpGH~~~~~get~~~dGk~l  449 (638)
T 3sbq_A          378 ----LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV---HYQPGHLHASLCETNEADGKWL  449 (638)
T ss_dssp             ----SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC---SSCEEEEEETTTTSTTCCSCEE
T ss_pred             ----CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc---ccCCcccccCCCccCCCCccEE
Confidence                356789999999 55554  8999999998643          23344433   233334433      4789999


Q ss_pred             EEEec
Q 006126          566 YVSCK  570 (660)
Q Consensus       566 ~sg~~  570 (660)
                      ++...
T Consensus       450 v~lnK  454 (638)
T 3sbq_A          450 VALSK  454 (638)
T ss_dssp             EEEES
T ss_pred             EEecc
Confidence            98753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.57  E-value=3.7  Score=41.32  Aligned_cols=147  Identities=10%  Similarity=0.067  Sum_probs=80.1

Q ss_pred             cEEEEEcCCC--eeeeceeeeeeeeccCCCCCCeEEEEEe---cC----CcEEEEE--ecCcEEEEeCCCCceeeeec--
Q 006126          479 QLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFH---PD----QIHLLSI--HEGQIDVYEAPTLNHTSQLV--  545 (660)
Q Consensus       479 ~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~----~~~l~~~--~d~~i~iwd~~~~~~~~~~~--  545 (660)
                      +|.+||+.++  +.++...+..-.....   +.+..+++.   |+    +.++..+  ..+.|.|+|+.+++.-+...  
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~---S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~  200 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKP---TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT  200 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCG---GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccC---CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence            4557788776  5554444321111111   468888888   22    3444444  45789999999887654431  


Q ss_pred             --CCCC------------CCCeEEEEEccC----CCEEEEEecCCeEEEEECC-----CCeeEEEeecccccCCCCcCcc
Q 006126          546 --PDKM------------DLPITYATYSCD----GKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLE  602 (660)
Q Consensus       546 --~~~~------------~~~v~~~~~s~d----g~~l~sg~~dg~I~iwd~~-----~~~~~~~~~~~~~~~~gh~~~~  602 (660)
                        ....            ...+..+++||+    +++|+-..-.+ -++|.+.     .......+.     ..|.....
T Consensus       201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~-----~~G~kg~~  274 (381)
T 3q6k_A          201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPE-----LLGNRGKY  274 (381)
T ss_dssp             GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCE-----EEEECCTT
T ss_pred             CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceE-----EeeecCCC
Confidence              1100            246788999988    77777665544 2233332     221111111     01211101


Q ss_pred             cceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          603 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       603 v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ......+..+.+|.++++--....|..|+...
T Consensus       275 s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          275 NDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             CCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             CCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            12224566533677777877888999999875

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=86.38  E-value=0.53  Score=35.34  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhhhcccc
Q 006126           65 KEELIYLIHQFLNEEEFKETLHKLEQETRVF   95 (660)
Q Consensus        65 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~   95 (660)
                      -.-+.-||-.||+-.||+.|+..|+-|+|..
T Consensus        18 GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~   48 (82)
T 2d68_A           18 GRLVASLVAEFLQFFNLDFTLAVFQPETSTL   48 (82)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence            4558889999999999999999999999996

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=84.86  E-value=28  Score=33.24  Aligned_cols=183  Identities=8%  Similarity=-0.034  Sum_probs=96.2

Q ss_pred             CeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126          378 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ  456 (660)
Q Consensus       378 ~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~  456 (660)
                      .|..++.. ...++. .||.|..|-......+..-..-...|..++...+. .+.-. ||.|+.|-....-.+..-....
T Consensus        64 ~i~~ia~G~~hs~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~  140 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQ  140 (282)
T ss_dssp             CCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGG
T ss_pred             CEEEEEeCCCEEEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCC
Confidence            46666665 444444 48999999765421111111112457777765554 23334 9999999765422121111123


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP  536 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~  536 (660)
                      ..|..++...+  ..+.-. ||.+..|-....-... .+..     ..   ..|..++...+... +. .||.|+.|-..
T Consensus       141 ~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg-~p~~-----~~---~~v~~i~~G~~hs~-al-~~G~v~~wG~n  206 (282)
T 3qhy_B          141 SGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT-VPAE-----AQ---SGVDDVAGGIFHSL-AL-KDGKVIAWGDN  206 (282)
T ss_dssp             SSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS-CCGG-----GG---SSEEEEEECSSEEE-EE-ETTEEEEEECC
T ss_pred             CCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC-Ccee-----cC---CCeEEEEecCCEEE-EE-ECCeEEEEECC
Confidence            45776665433  333334 7999999776521111 1111     11   35777766554433 34 68999999765


Q ss_pred             CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      ....+.. .. .....|..++...+...+++   ||.|+.|-....
T Consensus       207 ~~gqlg~-p~-~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          207 RYKQTTV-PT-EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT  247 (282)
T ss_dssp             TTSTTCC-CG-GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred             CCCCCCC-Cc-ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence            4222111 00 11345667776544333333   999999976653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.74  E-value=14  Score=38.25  Aligned_cols=112  Identities=13%  Similarity=-0.024  Sum_probs=61.8

Q ss_pred             CCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeee-eceeeee-eeec----cCCCCCCeEEEEEecC----CcEEEE-
Q 006126          457 NRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKL-CSKFLHS-FQTG----LVPETTIVNHIQFHPD----QIHLLS-  524 (660)
Q Consensus       457 ~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~-~~~~----~~~~~~~v~~~~~sp~----~~~l~~-  524 (660)
                      ...+.|+|.|+|. .|+++...|.|++++....... ....+.. ...+    ..   .....|+|+|+    +.+.++ 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e---~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDE---RGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCC---CSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCC---CcceeeEeCCCCcCCCEEEEEE
Confidence            3567899999996 4555678899999975432100 0001110 1111    11   46789999996    444333 


Q ss_pred             Ee--c----------CcEEEEeCCCC----------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126          525 IH--E----------GQIDVYEAPTL----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS  571 (660)
Q Consensus       525 ~~--d----------~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d  571 (660)
                      +.  +          ..|.-|.+..+          +.+..+........-..++|.|||.+.++.+..
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            32  1          14555665421          223333211123446789999999877765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	660
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 475
            + +  +     LF  G  D+S  +        +    GH++ I  + +  + N   +  
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-GQIDVYE 534
            DA   ++D    ++L +    +   G       +  + F      LL+ ++    +V++
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICG-------ITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578
           A   +    L     D  ++    + DG  +        +K+++
Sbjct: 299 ALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 381 CFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP----QDLFAFGFDDS 436
           CF   G+   + S                   +   I      +       L   G+DD 
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292

Query: 437 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484
           +  V           L GH NR++CL  +     + +   D+ L +W+
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 10/157 (6%)

Query: 433 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 492
             D++  +    T +      GH   +  L+ +    + VS   DA   +WD        
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220

Query: 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL 551
           +   H          + +N I F P+     +   +    +++            D +  
Sbjct: 221 TFTGH---------ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271

Query: 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 588
            IT  ++S  G+ +       +  V+D    +    +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506
           +T+  L+GH  +I  + +     +LVS+  D +L +WD+    K+ +  L S        
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW------ 99

Query: 507 TTIVNHIQFHPDQIHLLSIHE 527
              V    + P   ++     
Sbjct: 100 ---VMTCAYAPSGNYVACGGL 117

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 7e-12
 Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 17/221 (7%)

Query: 319 YSHSGDFLVALTQTATHKLWKWQSNKQ--SLEEENVNMESQLYQPSSKLVMT--NDIAAD 374
              +GD +V+ ++  T K+W+ Q+     +       +          L+ +  ND    
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

Query: 375 PKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFD 434
                +                +   S     + ++ +      T     P      G  
Sbjct: 169 VWVVATKECK---AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 435 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 494
           D +I +    T      L GH N +  + +      ++S   D  L VWD    + + + 
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285

Query: 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 534
             H            V  + FH    ++++   +  + V+E
Sbjct: 286 NAH---------EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 51/302 (16%), Positives = 99/302 (32%), Gaps = 37/302 (12%)

Query: 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---------------------EE 350
             V R+I+      +V+ ++ AT K+W +++                             
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 77

Query: 351 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASG-GKISIFSLETFQTLA 409
           + +M  +L+       +      D   S       G H+ SAS    I ++ ++T   + 
Sbjct: 78  SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137

Query: 410 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 468
           TF                 L A   +D ++ V    TK+ KA+L+ H++ + C++++   
Sbjct: 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197

Query: 469 NVLVSSGADAQLCVWDAVGWKKLCSK------FLHSFQTG-----LVPETTIVNHIQFHP 517
           +    S A              L S        +    TG     LV     V  + FH 
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257

Query: 518 DQIHLLSIHE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 576
               +LS  +   + V++         L   +    +T   +      +        VKV
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 577 FD 578
           ++
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 504
               K  L GH++ +T + +    +V+VS+  DA + VWD        +   H       
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH------- 58

Query: 505 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 564
             T  V  I F      L S                  + +       ++  +   +G  
Sbjct: 59  --TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDH 115

Query: 565 IYVSCKSGHVKVFDTSTLELRCQIN 589
           I  + +   +K+++  T        
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFT 140

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 3e-09
 Identities = 20/169 (11%), Positives = 49/169 (28%), Gaps = 6/169 (3%)

Query: 427 DLFAFGFDDSSILVHCPCTKKTK--AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484
              A   ++  + ++     K     +LK H  ++T + ++   N +V+ G D    VW 
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

Query: 485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 544
             G     +  +              N  +F              I  +E        + 
Sbjct: 80  LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKH 135

Query: 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 593
           +   +   +    +  +   +         ++F     E+  +   T +
Sbjct: 136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 16/147 (10%), Positives = 43/147 (29%), Gaps = 8/147 (5%)

Query: 455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 514
               I+C A++     +     + ++ +++  G K +    L             V  + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-------VTGVD 58

Query: 515 FHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 573
           + PD   +++   +    V+          LV  +++       ++ + K   V   S  
Sbjct: 59  WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118

Query: 574 VKVFDTSTLELRCQINLTAYAQPGTIS 600
           + +                     T+ 
Sbjct: 119 ISICYFEQENDWWVCKHIKKPIRSTVL 145

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 11/104 (10%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 444
            S + +       +F+ ++     +F     +              F   D         
Sbjct: 255 SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS- 313

Query: 445 TKKTKAKLKGHQNRITCLAYS----LSLNVLVSSGADAQLCVWD 484
                     H+N ++ ++         +   ++G D  + +WD
Sbjct: 314 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 30/319 (9%), Positives = 67/319 (21%), Gaps = 36/319 (11%)

Query: 272 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 331
           PD  +A    +    +        + +    L       G  +     S  G  + A   
Sbjct: 49  PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108

Query: 332 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 391
                   +      L         +++  +  L             +            
Sbjct: 109 PTQRLNDHYVVKPPRL---------EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159

Query: 392 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 451
            +G  I    ++T +                               +      + + +  
Sbjct: 160 VAGPDIYKMDVKTGKYTVALPLRNWN-----------RKGYSAPDVLYFWPHQSPRHEFS 208

Query: 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 511
           +     R              ++         D    K    +F           T +  
Sbjct: 209 MLYTIARFKDDKQDP-----ATADLLYGYLSVDLKTGKTHTQEFADL--------TELYF 255

Query: 512 HIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 571
                P   + +     ++  Y+              +D       +   G  +Y+    
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA---NLDHTYYCVAFDKKGDKLYLGGTF 312

Query: 572 GHVKVFDTSTLELRCQINL 590
             + VF+  TLE    I L
Sbjct: 313 NDLAVFNPDTLEKVKNIKL 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 25/138 (18%)

Query: 376 KDSISC--FALRGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFILLPQ------ 426
           KDS+    F   G  + S S    + +++L+     +    P         +        
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 427 -------DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL------NVLVS 473
                  +    G  D  +L     +      L+GH+N +  +A +         NV  +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 474 SGADAQLCVWDAVGWKKL 491
              D +  +W    +KK+
Sbjct: 374 GSGDCKARIWK---YKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 24/172 (13%)

Query: 374 DPKDSISCFALRGSHLFSASG-GKISIFSLETFQTLATFANPPPIAT------YFILLPQ 426
           D   +++     G ++ + S    + ++  ET   +    +     T      Y ++  +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264

Query: 427 D--LFAFGFDDSSILVH------------CPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 472
           D      G  D S+ +              P +   +    GH++ +  +A + +   ++
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324

Query: 473 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524
           S   D  +  WD      L     H      V    + N     P+     +
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGH---RNSVISVAVANGSSLGPEYNVFAT 373

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 25/188 (13%), Positives = 51/188 (27%), Gaps = 22/188 (11%)

Query: 451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI- 509
           K   H + + C+ +S     L  +G +    V+       +      S            
Sbjct: 57  KSLDHTSVVCCVKFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 510 --------VNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 561
                   +  + F PD   L +  E ++              +    +  I    Y   
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPS 174

Query: 562 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621
           G  +        V+++D  T +    +++        +            P +   IA G
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV-----------SPGDGKYIAAG 223

Query: 622 LTNGRVHV 629
             +  V V
Sbjct: 224 SLDRAVRV 231

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 4e-06
 Identities = 24/120 (20%), Positives = 35/120 (29%), Gaps = 13/120 (10%)

Query: 375 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGF 433
            K  I+C   R   + S S    I ++ +E    L        +              G 
Sbjct: 177 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGA 235

Query: 434 DDSSILV---------HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484
            D  I V           P        L  H  R+  L +      +VSS  D  + +WD
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 9e-04
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 3/126 (2%)

Query: 395 GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 454
             I +++  T + + T  N        +     L   G  D++I +           L+G
Sbjct: 158 RTIKVWNTSTCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG 216

Query: 455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 514
           H+  + C         +VS   D ++ VWD V      +         LV  +  V  +Q
Sbjct: 217 HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274

Query: 515 FHPDQI 520
           F   QI
Sbjct: 275 FDEFQI 280

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 25/217 (11%), Positives = 51/217 (23%), Gaps = 15/217 (6%)

Query: 374 DPKDSISCFALRGSHLFSASG-GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFG 432
           +    + C       + S      I I+   T +                    D     
Sbjct: 13  ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVII 69

Query: 433 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 492
              S   V        +       +    L    +  ++V+   D  + VWD      + 
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 552
            + +             VN + F    I   S  +  I V+       T + V       
Sbjct: 130 LRRVLVGHRA------AVNVVDFDDKYIVSAS-GDRTIKVWNT----STCEFVRTLNGHK 178

Query: 553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589
              A      + +        ++++D         + 
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 38/320 (11%), Positives = 83/320 (25%), Gaps = 33/320 (10%)

Query: 305 LPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 363
           +     G   +  + +  G      + ++ +       + +             L  P  
Sbjct: 27  ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDLSTPEE 79

Query: 364 KLVMTNDIAADPKDS----ISCFALRGSHLFSASGGKISIFSLETFQTLATFANPP-PIA 418
           ++      A  P                  F     +++++  ET      F  P     
Sbjct: 80  RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM 139

Query: 419 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 478
             +      L+  G D     V  P                   A    L V     +  
Sbjct: 140 LAWARDGSKLYGLGRDLH---VMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196

Query: 479 QLCVWDAVGWKKLCSKFLHSFQTGLV---PETTIVNHIQFHPDQIH-----------LLS 524
            +        K +      +++TGL+    ET  +   +     +               
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256

Query: 525 IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 584
                ++ ++        ++              S DG  +++    G +  +D  TLE 
Sbjct: 257 GAYNVLESFDLEKNASIKRVPLPHS---YYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 585 RCQINLTAYAQPGTISLELY 604
           + Q++L   A     S+ L+
Sbjct: 314 KGQVDLPGNASMSLASVRLF 333

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 2/120 (1%)

Query: 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-KFLHSFQ-TGLVPETTI 509
             GH   IT L+ S     L S+ A+  +  WD            +H+   TG+   +  
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 510 VNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 569
                   D + ++      +D  +A     +SQ +   +      A  +C       S 
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 30/292 (10%)

Query: 315 VRLIYSHSGDFLVALTQTATHKLWKWQSNK--QSLE---------------EENVNMESQ 357
           V       G+ +V+ +   T K+W   + K  ++L                  + + +  
Sbjct: 19  VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT 78

Query: 358 LYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPI 417
           L   +++             ++ C  L    + S S                        
Sbjct: 79  LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 138

Query: 418 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 477
           A   +         G  D  + V  P T+     L+GH NR+           +VS   D
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLD 196

Query: 478 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 537
             + VWD      + +   H          ++ + ++   + + +    +  + +++  T
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQ---------SLTSGMELKDNIL-VSGNADSTVKIWDIKT 246

Query: 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589
                 L                +   +  S   G VK++D  T E    + 
Sbjct: 247 GQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 504
             K+   LKGH + +         N +VS   D  L VW AV  K L +   H       
Sbjct: 5   ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH------- 56

Query: 505 PETTIVNHIQFHPDQIH 521
             T  V   Q   + I 
Sbjct: 57  --TGGVWSSQMRDNIII 71

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 374 DPKDSISCFALRGSHLFSA-SGGKISIFSLETFQTLATFANPPP--IATYFILLPQDLFA 430
             +   S   L+ + L S  +   + I+ ++T Q L T   P     A   +   ++   
Sbjct: 215 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 274

Query: 431 FGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAYSLSLNVLVSSGAD----AQLC 481
              DD ++ +    T +    L      G    +  +  S +  V      +     +L 
Sbjct: 275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334

Query: 482 VWD 484
           V D
Sbjct: 335 VLD 337

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 429 FAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 486
            A G  D++I ++         K L  H++ +  L +    + LVSSGADA +  W+ V
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 18/123 (14%)

Query: 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 511
           + GH   IT L  +     L+S   D ++  W +               +     + ++ 
Sbjct: 9   ISGHNKGITALTVN----PLISGSYDGRIMEWSS--------------SSMHQDHSNLIV 50

Query: 512 HIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 571
            +     Q +     +  + V         SQ      +     A  + D   + +   +
Sbjct: 51  SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 572 GHV 574
           G +
Sbjct: 111 GDI 113

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 427 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484
             F     D+ +         +  +     + +     S+    +V+   D +  V++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 9e-04
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 11/81 (13%)

Query: 455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 514
           H++ +  L ++      VS+G D  L  W       +              E++ V    
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ----------SKESSSVLSCD 313

Query: 515 FHPDQIHLLSI-HEGQIDVYE 534
              D  ++++   + +  VYE
Sbjct: 314 ISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 7/109 (6%)

Query: 416 PIATYFILLPQDLFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 474
           P  ++ +     +    F  D+ I    P   +    L  H   +  +  S      V +
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP-TRHVYT 68

Query: 475 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523
           G    + VWD                         +   +  PD   L+
Sbjct: 69  GGKGCVKVWDISHPGNKSPVSQLDCLN----RDNYIRSCKLLPDGCTLI 113

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 511
            +  ++ I+ +    S ++L+ +  D  L V+     +      L S +         + 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDLLQSLRY-----KHPLL 60

Query: 512 HIQFHPDQIHLL 523
              F  +    +
Sbjct: 61  CCNFIDNTDLQI 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 427 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 486
           +    G DD  I V+    KK   +L GH   +  L Y+    +LVS   D  + VWD  
Sbjct: 24  NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK 82

Query: 487 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 546
                     H+           ++ +++   +  +    +  + V++ P    +     
Sbjct: 83  KGCCTHVFEGHNST------VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK-ESSVPDHG 135

Query: 547 DKMDLPITYATYSCDGKCIYVSCKSGH 573
           ++ D P+ + T   +   + V      
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMA 162

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 29/305 (9%), Positives = 66/305 (21%), Gaps = 27/305 (8%)

Query: 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTND 370
            G+  +   +    F + + +     +      +    +      + + +    ++    
Sbjct: 75  TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT 134

Query: 371 IAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFA 430
           I+ + +     F L+           I ++ +E  +  A                     
Sbjct: 135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 194

Query: 431 FGFDDSSILV-------HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 483
           +    S                      +                    +   D      
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 254

Query: 484 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-GQIDVYEAPTLNHTS 542
            +           +     L     I +         +     E G +  Y+  T   T 
Sbjct: 255 RSSPINVDPGD--YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 312

Query: 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 602
                 +   +T    S D K + V    G +  F     E              T+  +
Sbjct: 313 ------VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE-----------DERTVETD 355

Query: 603 LYPLV 607
             PLV
Sbjct: 356 KRPLV 360

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 425 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSSGADAQLC 481
               FA    D++I V    T K   K    + ++      +       ++S   D  L 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 482 VWD 484
            ++
Sbjct: 322 FYE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 25/237 (10%), Positives = 60/237 (25%), Gaps = 39/237 (16%)

Query: 376 KDSISCFALRGSHLFSASG-GKISIFSLETF-------QTLATFANPPPI-------ATY 420
              I   +   S   S SG G + ++  +         ++ + F +   +       A  
Sbjct: 14  DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73

Query: 421 FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG----------HQNRITCLAYSLS--- 467
                  L A       +L +    +    K+             ++    L +  S   
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133

Query: 468 --LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---------VNHIQFH 516
              + LV++       +W    +    +    ++   L  + T+            +   
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 517 PDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 573
              +     + G + + E  TL            +  + +  S             H
Sbjct: 194 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	660
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.99
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.93
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.87
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.84
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.83
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.47
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.33
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.21
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.11
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.86
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.84
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.83
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.67
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.62
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.6
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.57
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	97.55
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.49
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.48
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.36
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.32
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.31
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.25
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.13
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.11
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.76
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.36
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.09
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.95
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.65
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.09
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.99
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.3
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.63
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.61
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.09

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-39  Score=328.67  Aligned_cols=279  Identities=15%  Similarity=0.184  Sum_probs=240.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      |...|.+++|+|+|++|++|+ ||.|+|||+.......                  .+......+|...|.+++|+  ++
T Consensus        50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------~~~~~~~~~h~~~I~~v~~s~dg~  110 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQLDCLNRDNYIRSCKLLPDGC  110 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEEEECSCTTSBEEEEEECTTSS
T ss_pred             CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------eeEEeeecCCCCcEEEEEEcCCCC
Confidence            899999999999999999987 8999999987654310                  11111112699999999999  88


Q ss_pred             EEEEEe-CCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126          388 HLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA  463 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~  463 (660)
                      +|++++ ||.|++||+..  ++....+..|...+.+++|+|++ .+++++.|+.|++||+.+++......+|...|.+++
T Consensus       111 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~  190 (337)
T d1gxra_         111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999 99999999874  45667778899999999999999 999999999999999999999999999999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126          464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~  542 (660)
                      |++++..+++++.|+.+++||+++++.....       .+.   ..|.+++|+|+++++++ +.|+.|++||+++++...
T Consensus       191 ~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-------~~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  260 (337)
T d1gxra_         191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------DFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred             ccccccccccccccccccccccccceeeccc-------ccc---cceEEEEEcccccccceecccccccccccccccccc
Confidence            9999999999999999999999996543221       233   68999999999999998 589999999999887754


Q ss_pred             eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                      ..   .|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.        | ...+.  +++|+| ++++|++|+
T Consensus       261 ~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~-~~~v~--~~~~s~-d~~~l~t~s  325 (337)
T d1gxra_         261 LH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------E-SSSVL--SCDISV-DDKYIVTGS  325 (337)
T ss_dssp             EC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEEEE
T ss_pred             cc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--------C-CCCEE--EEEEeC-CCCEEEEEe
Confidence            43   468899999999999999999999999999999999887653        2 33444  999999 899999999


Q ss_pred             CCCeEEEEeC
Q 006126          623 TNGRVHVIEP  632 (660)
Q Consensus       623 ~Dg~v~iw~~  632 (660)
                      .||+|+|||+
T Consensus       326 ~D~~I~vWdl  335 (337)
T d1gxra_         326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=319.55  Aligned_cols=274  Identities=12%  Similarity=0.058  Sum_probs=236.6

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      +.|+|+|++|++|+ ||.|+|||+..............  .+|.+.|.+++|+|+|++|++++.||.|++||+...... 
T Consensus        57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~--~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~-  132 (337)
T d1gxra_          57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-  132 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC--SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-
T ss_pred             EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeee--cCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc-
Confidence            39999999999987 89999999986444444444333  348999999999999999999999999999998654321 


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL  424 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s  424 (660)
                                        ......  +|...+.+++|+  +.++++++ |+.|++|++.++++......|...|.+++|+
T Consensus       133 ------------------~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s  192 (337)
T d1gxra_         133 ------------------IKAELT--SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             ------------------EEEEEE--CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ------------------cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                              111111  688899999999  78899998 8999999999999999999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126          425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL  503 (660)
Q Consensus       425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  503 (660)
                      +++ .+++|+.|+.|++||+++++.+..+. |...|.+++|+|+++++++++.|+.+++||+++++..       ....|
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~  264 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-------QLHLH  264 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-------EECCC
T ss_pred             ccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-------ccccc
Confidence            999 99999999999999999999887775 8899999999999999999999999999999985432       23455


Q ss_pred             CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          504 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       504 ~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      .   ..|.+++|+|++++|++ +.|+.|++||+.+++.+..+.   |...|.+++|+|++++|++|+.||.|+|||+
T Consensus       265 ~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         265 E---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             S---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             c---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            5   68999999999999998 589999999999999887763   5789999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-37  Score=323.09  Aligned_cols=332  Identities=13%  Similarity=0.088  Sum_probs=246.5

Q ss_pred             EEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEE
Q 006126          279 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL  358 (660)
Q Consensus       279 s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~  358 (660)
                      .+..++...+|+..............   .+|++.|+|++|+|||++||+|+ |+.|+||++.++...........  ..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~---~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~--~~  106 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKS---LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA--AN  106 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEE---EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEee---CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccc--cc
Confidence            45677788899876421111111111   13999999999999999999986 89999999988765332000000  00


Q ss_pred             ecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC
Q 006126          359 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD  434 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~  434 (660)
                      .+.   .........+|...|++++|+  +++|++|+ ||.|++||..+++....+.+|...|.++.+++++ .+++++.
T Consensus       107 ~~~---~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  183 (388)
T d1erja_         107 KDP---ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG  183 (388)
T ss_dssp             ---------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccc---cccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            000   011111112688999999999  88999999 9999999999999999999999999999999999 9999999


Q ss_pred             CCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee-eeeeccCCCCCCeEEE
Q 006126          435 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHI  513 (660)
Q Consensus       435 d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~  513 (660)
                      ++.+++||..+.........+...+....+.+++.+|++++.|+.|++||.+++......... ....+|.   ..|.++
T Consensus       184 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l  260 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSV  260 (388)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEE
T ss_pred             ceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCC---CCEEEE
Confidence            999999999998887777655554444444458899999999999999999987654332211 1234566   689999


Q ss_pred             EEecCCcEEEE-EecCcEEEEeCCCCceeeee----------cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126          514 QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL----------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL  582 (660)
Q Consensus       514 ~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~  582 (660)
                      +|+|++++|++ +.|+.|++||++++......          ....|...|.+++|+|+|++|++|+.||.|++||+.++
T Consensus       261 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999999 58999999999865433221          11236789999999999999999999999999999999


Q ss_pred             eeEEEeecccccCCCCcCcccceEEEE------EecCCCCEEEEEeCCCeEEEEeCC
Q 006126          583 ELRCQINLTAYAQPGTISLELYPLVIA------AHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~------~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      +++..+.       || ...|.  +++      |+| ++.+||||+.||+|+||+++
T Consensus       341 ~~~~~l~-------~H-~~~V~--~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         341 NPLLMLQ-------GH-RNSVI--SVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEE-------CC-SSCEE--EEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             cEEEEEe-------CC-CCCEE--EEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            9999887       44 44455  554      578 78999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-37  Score=306.28  Aligned_cols=278  Identities=18%  Similarity=0.221  Sum_probs=245.2

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ||.++|++++|+|++++|++|+.||+|+|||+.+++.                     +..+.  +|...|.+++|+  +
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~---------------------~~~~~--~h~~~V~~~~~~~~~   71 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------ERTLK--GHTDSVQDISFDHSG   71 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------CEEEC--CCSSCEEEEEECTTS
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE---------------------EEEEe--CCCCcEEEEeeeccc
Confidence            4999999999999999999999999999999876654                     11111  699999999999  7


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      .+++++. ++.+.+|+....+....+..|...+.++.|+|++ .+++++.|+.+++||+++++.+..+.+|...+.+++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  151 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence            8888888 8999999999999888888999999999999999 9999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--------------------cEEEE
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--------------------IHLLS  524 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--------------------~~l~~  524 (660)
                      +|++.++++++.|+.|++|++.++...     . ...+|.   ..+.++.|+|++                    .++++
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~-----~-~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECK-----A-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEE-----E-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceee-----E-EEecCC---CCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            999999999999999999999985432     2 234555   578888887753                    45666


Q ss_pred             -EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126          525 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL  603 (660)
Q Consensus       525 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v  603 (660)
                       +.|+.|++||+++++++.++..  |...|.+++|+|++++|++|+.||.|+|||+.+++++..+.       +| ...|
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~h-~~~V  292 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------AH-EHFV  292 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------CC-SSCE
T ss_pred             ccCCCEEEEEECCCCcEEEEEeC--CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc-------CC-CCCE
Confidence             5899999999999999998875  68899999999999999999999999999999999998887       44 4445


Q ss_pred             ceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126          604 YPLVIAAHPLEPNRIALGLTNGRVHVIE  631 (660)
Q Consensus       604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~  631 (660)
                      .  +++|+| ++++|++|+.||+|+|||
T Consensus       293 ~--~~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         293 T--SLDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             E--EEEECS-SSSCEEEEETTSEEEEEC
T ss_pred             E--EEEEcC-CCCEEEEEeCCCeEEEeC
Confidence            5  999999 899999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-36  Score=304.82  Aligned_cols=281  Identities=16%  Similarity=0.129  Sum_probs=233.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      +.+.+..++++|+|+.|+.++ ++.+.+|++.+...                     ...+.  +|...|++++|+  |+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~---------------------~~~~~--~H~~~v~~~~~sp~g~   71 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD---------------------TEIYT--EHSHQTTVAKTSPSGY   71 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC---------------------CEEEC--CCSSCEEEEEECTTSS
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce---------------------eEEEc--CCCCCEEEEEEeCCCC
Confidence            566778899999999998875 56788888765543                     11111  799999999999  89


Q ss_pred             EEEEEe-CCcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCC-eEEEEeC--CCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          388 HLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp~~-~l~s~~~--d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      +|++|+ ||+|++||+.++...  ..+..|...|.+++|+|++ .+++++.  +..+++|++++++....+.+|...|++
T Consensus        72 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          72 YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             eEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999 999999999887643  5577899999999999999 8888875  456999999999999999999999999


Q ss_pred             EEEeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126          462 LAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN  539 (660)
Q Consensus       462 l~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~  539 (660)
                      ++|+|++++ +++|+.|+.|++||+++++.     .. ...+|.   ..|.++.|+|+++++++ +.|+.|++||..++.
T Consensus       152 v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~  222 (311)
T d1nr0a1         152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----KS-TFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  222 (311)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTBEE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             ccccccceeeeccccccccccccccccccc-----cc-cccccc---ccccccccCcccccccccccccccccccccccc
Confidence            999999885 88899999999999998542     22 455666   68999999999999998 589999999999988


Q ss_pred             eeeeecCC-----CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          540 HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       540 ~~~~~~~~-----~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      .+..+...     .|...|++++|+|++++|++|+.||.|+|||+++++++..+..+       ......+.++.|   +
T Consensus       223 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~-------~~~~~~~~~~~~---~  292 (311)
T d1nr0a1         223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-------TRIEDQQLGIIW---T  292 (311)
T ss_dssp             EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-------SSGGGCEEEEEE---C
T ss_pred             ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC-------CCccceEEEEEe---c
Confidence            77766432     36788999999999999999999999999999999999888642       222233334554   4


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q 006126          615 PNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ++.|++++.||.|++||++
T Consensus       293 ~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSCEEEEETTCCEEEEETT
T ss_pred             CCEEEEEECCCEEEEEeCC
Confidence            5679999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.8e-36  Score=302.08  Aligned_cols=280  Identities=12%  Similarity=0.128  Sum_probs=230.8

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++++|+|+.|+.++ ++.+.+||+..    ...... +.  +|.+.|.+++|+|+|++||+|+.||+|++|++.......
T Consensus        23 ~a~~~~g~~l~~~~-~~~v~i~~~~~----~~~~~~-~~--~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          23 LGNTPAGDKIQYCN-GTSVYTVPVGS----LTDTEI-YT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CEECTTSSEEEEEE-TTEEEEEETTC----SSCCEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             EEEcCCCCEEEEEe-CCEEEEEECCC----CceeEE-Ec--CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            48899999999986 56799999985    323222 32  499999999999999999999999999999987765411


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C--CcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                      .                   . .+ .+|..+|.+++|+  +.+|++++ +  ..+++|++++++....+.+|...|++++
T Consensus        95 ~-------------------~-~~-~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~  153 (311)
T d1nr0a1          95 K-------------------T-TI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD  153 (311)
T ss_dssp             E-------------------E-EE-ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEE
T ss_pred             c-------------------c-cc-ccccCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1                   0 01 1689999999999  78888887 3  5699999999999999999999999999


Q ss_pred             EcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee-ee
Q 006126          423 LLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SF  499 (660)
Q Consensus       423 ~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~  499 (660)
                      |+|++  .|++|+.|+.|++||+++++....+.+|...|+++.|+|+++++++++.|+.|++||..++......... ..
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  233 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  233 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             ccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence            99999  6889999999999999999999999999999999999999999999999999999999987654322211 12


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      ..+|.   +.|.+++|+|++++|++ +.|+.|+|||++++++++++..+. ......+.+.++++.|++++.||.|++||
T Consensus       234 ~~~h~---~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         234 NVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             SCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             ccccc---ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-CccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            34566   68999999999999999 589999999999999998886532 22223344445567899999999999999


Q ss_pred             CC
Q 006126          579 TS  580 (660)
Q Consensus       579 ~~  580 (660)
                      ++
T Consensus       310 ~d  311 (311)
T d1nr0a1         310 PE  311 (311)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-35  Score=296.20  Aligned_cols=282  Identities=20%  Similarity=0.261  Sum_probs=245.5

Q ss_pred             cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126          245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG  323 (660)
Q Consensus       245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg  323 (660)
                      ...++||.. |.++           .|+|++++|++|+.||+|+|||+.+    +.+.. ++.  +|...|.+++|+|++
T Consensus        10 ~~~L~GH~~~I~~l-----------~~sp~~~~l~s~s~Dg~i~iWd~~~----~~~~~-~~~--~h~~~V~~~~~~~~~   71 (317)
T d1vyhc1          10 KYALSGHRSPVTRV-----------IFHPVFSVMVSASEDATIKVWDYET----GDFER-TLK--GHTDSVQDISFDHSG   71 (317)
T ss_dssp             SCEEECCSSCEEEE-----------EECSSSSEEEEEESSSCEEEEETTT----CCCCE-EEC--CCSSCEEEEEECTTS
T ss_pred             cEEEcCCCCCeEEE-----------EEcCCCCEEEEEeCCCeEEEEECCC----CCEEE-EEe--CCCCcEEEEeeeccc
Confidence            345778877 5565           9999999999999999999999985    33332 243  389999999999999


Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF  400 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw  400 (660)
                      .++++++.++.+.+|+......                     ....  .+|...+.++.++  ++.+++++ |+.+++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFEC---------------------IRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMW  128 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCE---------------------EECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccccccccccccccccccccc---------------------cccc--ccccccceeeeccCCCceEEeeccCcceeEe
Confidence            9999999999998888665543                     1111  1688889999999  88999999 9999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC-----------
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-----------  468 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-----------  468 (660)
                      |+.+++....+..|...+.+++|+|++ .|++++.|+.|++|++.+++....+.+|...+.++.|+|++           
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  208 (317)
T d1vyhc1         129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS  208 (317)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             ecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccc
Confidence            999999999999999999999999999 99999999999999999999999999999999999998764           


Q ss_pred             ---------CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126          469 ---------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL  538 (660)
Q Consensus       469 ---------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~  538 (660)
                               ..+++++.|+.|++||+++++.     +. ...+|.   ..|.+++|+|++++|++ +.||.|++||++++
T Consensus       209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-----~~-~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-----LM-TLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTEE-----EE-EEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             eeeeeccCCceeEeccCCCEEEEEECCCCcE-----EE-EEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence                     4789999999999999999643     33 345676   68999999999999998 58999999999999


Q ss_pred             ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126          539 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       539 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      +++.++..  |...|++++|+|++++|++|+.||.|+|||
T Consensus       280 ~~~~~~~~--h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         280 RCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             cEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99998865  689999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-34  Score=294.38  Aligned_cols=290  Identities=16%  Similarity=0.195  Sum_probs=244.0

Q ss_pred             CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126          243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  321 (660)
Q Consensus       243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp  321 (660)
                      ...++++||.. |.++           +|+|++++||+|+.||+|+|||+.+    +.... .++.  |..+|.+++|+|
T Consensus        46 ~~~~tL~GH~~~I~~l-----------~~s~~~~~l~sgs~Dg~v~iWd~~~----~~~~~-~~~~--~~~~v~~v~~~~  107 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAM-----------HWGTDSRLLVSASQDGKLIIWDSYT----TNKVH-AIPL--RSSWVMTCAYAP  107 (340)
T ss_dssp             CEEEEECCCSSCEEEE-----------EECTTSSEEEEEETTTEEEEEETTT----TEEEE-EEEC--SCSCEEEEEECT
T ss_pred             eeeEEECCCCCCEEEE-----------EECCCCCEEEEEECCCceeeeeccc----ceeEE-EEec--ccccEEeeEeec
Confidence            45567889988 6666           9999999999999999999999984    33332 2433  899999999999


Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISI  399 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~i  399 (660)
                      +|+++++|+.|+.+.+|+........                 ......  .+|.......... +..+.... +.....
T Consensus       108 ~~~~l~~~~~d~~i~~~~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (340)
T d1tbga_         108 SGNYVACGGLDNICSIYNLKTREGNV-----------------RVSREL--AGHTGYLSCCRFLDDNQIVTSSGDTTCAL  168 (340)
T ss_dssp             TSSEEEEEETTCCEEEEESSSSCSCC-----------------CEEEEE--CCCSSCEEEEEEEETTEEEEEETTTEEEE
T ss_pred             cceeeeeecccceeeccccccccccc-----------------ccceec--ccccccccccccccccccccccccccccc
Confidence            99999999999999999976554311                 111111  1577777766666 77777777 899999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC
Q 006126          400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA  478 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  478 (660)
                      +.............+...+....+.+.+ .+++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++|+.||
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~  248 (340)
T d1tbga_         169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC
Confidence            9999888888888888999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126          479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT  557 (660)
Q Consensus       479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  557 (660)
                      .|++||++.........    ...+.   ..|.+++|+|++++|++ +.||.|++||+.+++++.++.+  |...|++++
T Consensus       249 ~i~~~~~~~~~~~~~~~----~~~~~---~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--H~~~V~~l~  319 (340)
T d1tbga_         249 TCRLFDLRADQELMTYS----HDNII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLG  319 (340)
T ss_dssp             CEEEEETTTTEEEEEEC----CTTCC---SCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             eEEEEeecccccccccc----ccccc---CceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC--CCCCEEEEE
Confidence            99999999855322111    12233   57999999999999999 5899999999999999999865  689999999


Q ss_pred             EccCCCEEEEEecCCeEEEEE
Q 006126          558 YSCDGKCIYVSCKSGHVKVFD  578 (660)
Q Consensus       558 ~s~dg~~l~sg~~dg~I~iwd  578 (660)
                      |+|++++|++|+.||.|+|||
T Consensus       320 ~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-34  Score=291.43  Aligned_cols=280  Identities=14%  Similarity=0.181  Sum_probs=240.8

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      ||.++|++++|+|++++||+|+.||+|+|||+.+++.                     +..+.  +|...|.+++|+  +
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~---------------------~~~~~--~~~~~v~~v~~~~~~  109 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK---------------------VHAIP--LRSSWVMTCAYAPSG  109 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE---------------------EEEEE--CSCSCEEEEEECTTS
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee---------------------EEEEe--cccccEEeeEeeccc
Confidence            4999999999999999999999999999999876654                     11111  689999999999  8


Q ss_pred             CEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          387 SHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      .++++++ |+.+.+|+....    .....+.+|...........+..+..+..|.....++............+...+..
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS  189 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee
Confidence            8999999 999999997653    45566777777776666655557888889999999998888777777788899999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH  540 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~  540 (660)
                      ..+.+.+.++++++.|+.|++||+++++.     +. ...+|.   ..|.+++|+|++.+|++ +.|+.|++||+.....
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~-----~~-~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMC-----RQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             eccccccceeEEeecCceEEEEECCCCcE-----EE-EEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence            99999999999999999999999998543     33 345676   68999999999999999 5899999999999988


Q ss_pred             eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126          541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL  620 (660)
Q Consensus       541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s  620 (660)
                      +..+....+...|.+++|+|++++|++|+.||.|++||+.+++.+..+.       || ...|.  +++|+| ++.+|+|
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~H-~~~V~--~l~~s~-d~~~l~s  329 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-------GH-DNRVS--CLGVTD-DGMAVAT  329 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEeC-CCCEEEE
Confidence            8877666678889999999999999999999999999999999998886       44 44555  999999 8999999


Q ss_pred             EeCCCeEEEEe
Q 006126          621 GLTNGRVHVIE  631 (660)
Q Consensus       621 ~s~Dg~v~iw~  631 (660)
                      ||.||+|+|||
T Consensus       330 ~s~Dg~v~iWd  340 (340)
T d1tbga_         330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             EccCCEEEEeC
Confidence            99999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=301.16  Aligned_cols=281  Identities=14%  Similarity=0.117  Sum_probs=222.8

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeee--------------cCCCCCCCCeEEEEEecCCCEEEEEECCC
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL--------------LPDNSFGGRVVRLIYSHSGDFLVALTQTA  333 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------l~~~~h~~~V~~~~~spdg~~l~s~s~dg  333 (660)
                      +.|||||++||+|+ |++|+|||+.++.   ....+.              ....+|...|.+++|+|+|++|++|+.||
T Consensus        68 l~fs~dg~~lasg~-d~~i~iW~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg  143 (388)
T d1erja_          68 VKFSNDGEYLATGC-NKTTQVYRVSDGS---LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR  143 (388)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCC---EEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred             EEECCCCCEEEEEe-CCeEEEEEecccc---eEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence            39999999999986 8999999997521   111110              11134788899999999999999999999


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT  410 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~  410 (660)
                      .|++|+...++.                     +...  .+|...|.++.++  +..+++++ ++.+++||..+......
T Consensus       144 ~v~i~~~~~~~~---------------------~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  200 (388)
T d1erja_         144 LIRIWDIENRKI---------------------VMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  200 (388)
T ss_dssp             CEEEEETTTTEE---------------------EEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             cccccccccccc---------------------cccc--ccccccccccccccccccccccccceeeeeeeccccccccc
Confidence            999999876654                     1111  1699999999999  77888888 89999999999888887


Q ss_pred             EcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe-------eccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126          411 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVSSGADAQLCV  482 (660)
Q Consensus       411 ~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v  482 (660)
                      ...+...+....+.+++ .|++|+.|+.|++||..++.....+       .+|...|.+++|+|++++|++++.||.|++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i  280 (388)
T d1erja_         201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  280 (388)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEE
Confidence            76666555444444567 9999999999999999998877655       358889999999999999999999999999


Q ss_pred             EEcCCCeeeece------eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 006126          483 WDAVGWKKLCSK------FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITY  555 (660)
Q Consensus       483 wd~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  555 (660)
                      ||++++......      ........|.   ..|.+++|+|++++|++ +.||.|++||+++++++.++.+  |...|++
T Consensus       281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~--H~~~V~~  355 (388)
T d1erja_         281 WNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG--HRNSVIS  355 (388)
T ss_dssp             EEC---------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEE
T ss_pred             EeccCCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC--CCCCEEE
Confidence            999875432211      1111334555   68999999999999999 5899999999999999999875  6899999


Q ss_pred             EEE------ccCCCEEEEEecCCeEEEEECC
Q 006126          556 ATY------SCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       556 ~~~------s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      +++      +|++++|++|+.||.|+||+++
T Consensus       356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            875      5789999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-34  Score=289.42  Aligned_cols=282  Identities=9%  Similarity=0.027  Sum_probs=215.7

Q ss_pred             CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126          308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--  385 (660)
Q Consensus       308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  385 (660)
                      +||.++|++++|+|+|++|++|+.||+|++||+.+++.                     ... +..+|...|++++|+  
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~---------------------~~~-~~~~h~~~v~~v~~~~~   66 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------------NRV-FPDVHATMITGIKTTSK   66 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------EEC-SSCSCSSCEEEEEECTT
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------------------EEE-EcCCCCCcEEEEEeecc
Confidence            46999999999999999999999999999999876653                     111 122689999999999  


Q ss_pred             CCEEEEEeCCcEEEEECCCCeE---EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          386 GSHLFSASGGKISIFSLETFQT---LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      +.+++++.|+.+++|+......   ......+...+.+++|+|++ .++++ .++.+++|+..  +.....  ....+.+
T Consensus        67 g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~--~~~~~~--~~~~~~~  141 (299)
T d1nr0a2          67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KLTEVP--ISYNSSC  141 (299)
T ss_dssp             SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT--EEEEEE--CSSCEEE
T ss_pred             ceeecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-ccccccccccc--cccccc--ccccccc
Confidence            5554444499999999865322   11223566788999999999 65555 46789999854  223222  3456889


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH  540 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~  540 (660)
                      ++|+|+++++++++.|+.|++||+++++...   +  ....|.   ..|.+++|+|+++++++ +.|+.|++||+.++..
T Consensus       142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~---~--~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  213 (299)
T d1nr0a2         142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSE---V--KTIVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE  213 (299)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEEEETTEEEE---E--EEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred             ccccccccccccccccccccccccccccccc---c--cccccc---cccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999998854321   1  233455   68999999999999998 5899999999988766


Q ss_pred             eeeec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126          541 TSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA  619 (660)
Q Consensus       541 ~~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~  619 (660)
                      ..... ...|...|++++|+|++++|++|+.||.|++||++++.....+...     +|+...+.  ++.| | ++.+|+
T Consensus       214 ~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~v~--~~~~-~-~~~~l~  284 (299)
T d1nr0a2         214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-----AHAMSSVN--SVIW-L-NETTIV  284 (299)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-----SSTTSCEE--EEEE-E-ETTEEE
T ss_pred             ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec-----CCCCCcEE--EEEE-C-CCCEEE
Confidence            54332 2346889999999999999999999999999999987654443321     33334344  5555 4 468999


Q ss_pred             EEeCCCeEEEEeCC
Q 006126          620 LGLTNGRVHVIEPL  633 (660)
Q Consensus       620 s~s~Dg~v~iw~~~  633 (660)
                      +++.||+|+|||+.
T Consensus       285 s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         285 SAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEETTSCEEEEECC
T ss_pred             EEeCCCEEEEEecc
Confidence            99999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-34  Score=296.89  Aligned_cols=296  Identities=9%  Similarity=0.062  Sum_probs=225.9

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS  387 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~  387 (660)
                      +.++|.|++|+|||++||+|+.||.|+||+..+++...                   +..+  .+|.++|.+++|+  ++
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~-------------------~~~l--~gH~~~V~~l~fsp~~~   64 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------VHEL--KEHNGQVTGVDWAPDSN   64 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEE-------------------EEEE--ECCSSCEEEEEEETTTT
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEE-------------------EEEe--cCCCCCEEEEEECCCCC
Confidence            46789999999999999999999999999987654311                   1111  1799999999999  89


Q ss_pred             EEEEEe-CCcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee----eEeeccCCCe
Q 006126          388 HLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK----AKLKGHQNRI  459 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~----~~~~~~~~~v  459 (660)
                      +|++++ |++|++||+.++...  ..+..|...|.+++|+|++ .|++|+.|+.|++|++......    .....|...|
T Consensus        65 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccc
Confidence            999999 999999999877654  4456788999999999999 9999999999999998765432    3345688999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec-------------eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E
Q 006126          460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-------------KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I  525 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~  525 (660)
                      .+++|+|++++|++|+.|++|++||.........             ..+. ...+|.   ..|.+++|+|+|++|++ +
T Consensus       145 ~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~g~~l~s~~  220 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSC---GWVHGVCFSANGSRVAWVS  220 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCS---SCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee-eccCcc---CcEEEEEeecccccccccc
Confidence            9999999999999999999999999876432110             0111 233455   68999999999999998 5


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC--CCeeEEEee--cc----------
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS--TLELRCQIN--LT----------  591 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~--~~~~~~~~~--~~----------  591 (660)
                      .|+.|++||+.+++.+..+..  |..+|.+++|+|++++|++|. |+.+++|...  .+.......  ..          
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~--~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  297 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             cCCcceEEeeecccceeeeec--ccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence            899999999999999888865  588999999999998888765 6766665543  333211100  00          


Q ss_pred             --------------------cccCCCCcCcccceEEEEEecCCC---CEEEEEeCCCeEEEEeCCCCc
Q 006126          592 --------------------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       592 --------------------~~~~~gh~~~~v~~~~v~~sp~d~---~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                                          ......| .+.+  .+++++|...   ..++|+|.||+|+|||+.+.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H-~~~I--~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~  362 (371)
T d1k8kc_         298 RERFQNLDKKASSEGSAAAGAGLDSLH-KNSV--SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  362 (371)
T ss_dssp             HHHHHHCCCCC---------CCCSSSS-SSCE--EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eeeEecccceeEEeccccccceecccc-cCCE--EEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence                                0001113 3334  4888877321   369999999999999986543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-33  Score=293.40  Aligned_cols=279  Identities=10%  Similarity=0.045  Sum_probs=219.9

Q ss_pred             eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcce-eeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126          267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .++|+|||++||+|+.||.|+|||..+    ++. ....|.  +|.++|.+++|+|++++|++++.|++|+||++.+...
T Consensus        12 ~~~~s~dg~~la~~~~~~~i~iw~~~~----~~~~~~~~l~--gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_          12 CHAWNKDRTQIAICPNNHEVHIYEKSG----NKWVQVHELK--EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEET----TEEEEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCC----CCEEEEEEec--CCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            349999999999999999999999974    332 222354  4999999999999999999999999999999876543


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeE----EEEEcCCCCCe
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT----LATFANPPPIA  418 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~----~~~~~~~~~~v  418 (660)
                      ..                   .  ....+|...|.+++|+  +++|++++ |+.|++|++.....    ......|...|
T Consensus        86 ~~-------------------~--~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          86 KP-------------------T--LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EE-------------------E--EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             cc-------------------c--cccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccc
Confidence            11                   0  0111688999999999  88999999 99999999876543    23345788999


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCC------------------ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTK------------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~------------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      .+++|+|++ +|++|+.|+.|++||....                  +.+....+|...|.+++|+|+|++|++++.|+.
T Consensus       145 ~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  224 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST  224 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc
Confidence            999999999 9999999999999997643                  244556778999999999999999999999999


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC--Cceeee--------------
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT--LNHTSQ--------------  543 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~--~~~~~~--------------  543 (660)
                      |++||+.++.     .+. ...+|.   .+|.+++|+|+++++++|.|+.+++|+...  +.....              
T Consensus       225 i~iwd~~~~~-----~~~-~~~~~~---~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
T d1k8kc_         225 VCLADADKKM-----AVA-TLASET---LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  295 (371)
T ss_dssp             EEEEEGGGTT-----EEE-EEECSS---CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             ceEEeeeccc-----cee-eeeccc---ccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence            9999998854     333 344555   689999999999999988888776665432  211100              


Q ss_pred             -----------------------ecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEEEECCC
Q 006126          544 -----------------------LVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       544 -----------------------~~~~~~~~~v~~~~~s~dg----~~l~sg~~dg~I~iwd~~~  581 (660)
                                             .....|...|+++++.+.+    ..++|++.||.|+|||+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                   0001267789999998754    4689999999999999865

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-32  Score=277.45  Aligned_cols=325  Identities=18%  Similarity=0.208  Sum_probs=249.2

Q ss_pred             CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126          243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH  321 (660)
Q Consensus       243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp  321 (660)
                      ++..+++||.. |.+            .++++|++||+|+.||+|+|||+.+    +++.. ++.+  |.+.|.+++|+|
T Consensus         7 ~~~~~l~GH~~~V~s------------~~~~~g~~l~sgs~Dg~i~vWd~~~----~~~~~-~~~~--h~~~V~~v~~~~   67 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT------------CLQFCGNRIVSGSDDNTLKVWSAVT----GKCLR-TLVG--HTGGVWSSQMRD   67 (342)
T ss_dssp             CCCEEEECSTTSCEE------------EEEEETTEEEEEETTSCEEEEETTT----CCEEE-ECCC--CSSCEEEEEEET
T ss_pred             CcCEEECCcCCceEE------------EEEECCCEEEEEeCCCeEEEEECCC----CCEEE-EEeC--CCCCEEEEEeCC
Confidence            34556777776 443            5677899999999999999999984    44443 2544  999999999997


Q ss_pred             CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 006126          322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF  400 (660)
Q Consensus       322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iw  400 (660)
                      +  +|++++.|+.+++|+.........                     .  ..+...+.........++.+. |+.+.+|
T Consensus        68 ~--~l~s~s~D~~~~~~~~~~~~~~~~---------------------~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  122 (342)
T d2ovrb2          68 N--IIISGSTDRTLKVWNAETGECIHT---------------------L--YGHTSTVRCMHLHEKRVVSGSRDATLRVW  122 (342)
T ss_dssp             T--EEEEEETTSCEEEEETTTTEEEEE---------------------E--CCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             C--ccccceecccccccccccccceec---------------------c--cccceeEeeeecccccccccccceeEEEe
Confidence            5  899999999999999876643111                     0  024445555555577777777 9999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      +..+++....+........  .+.+.. .+++++.|+.|++||...++.+..+.+|...+..+.  +++.++++++.||.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~  198 (342)
T d2ovrb2         123 DIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTS  198 (342)
T ss_dssp             ESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSC
T ss_pred             ecccccceeeeecccccce--eeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCe
Confidence            9999988887765555443  334445 899999999999999999999999999887776654  47889999999999


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-CCCCCeEEEE
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYAT  557 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~  557 (660)
                      |++||++.++.     +. ...+|.   ..+.++.+++  +++++ +.|+.|++||+...+....+... .|...+.++.
T Consensus       199 i~~~d~~~~~~-----~~-~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  267 (342)
T d2ovrb2         199 IRVWDVETGNC-----IH-TLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ  267 (342)
T ss_dssp             EEEEETTTCCE-----EE-EECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred             EEEeeccccee-----ee-Eecccc---cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecc
Confidence            99999998543     33 345666   5777777664  58888 58999999999988887777543 2455666666


Q ss_pred             EccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe----EEEEeCC
Q 006126          558 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHVIEPL  633 (660)
Q Consensus       558 ~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~----v~iw~~~  633 (660)
                      +  +++++++|+.||.|++||+++++.+..+....  ..+| ...|+  +++|+| ++.++|+|+.||+    |++||+.
T Consensus       268 ~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~--~~~~-~~~v~--~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         268 F--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE--SGGS-GGVVW--RIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             E--CSSEEEEEETTSEEEEEETTTCCEEEEEEECT--TGGG-TCEEE--EEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             c--CCCeeEEEcCCCEEEEEECCCCCEEEEEeccc--CCCC-CCCEE--EEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence            5  56799999999999999999999988775321  1123 34455  999999 8999999999986    9999986


Q ss_pred             C
Q 006126          634 E  634 (660)
Q Consensus       634 ~  634 (660)
                      .
T Consensus       340 ~  340 (342)
T d2ovrb2         340 V  340 (342)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-33  Score=283.62  Aligned_cols=290  Identities=14%  Similarity=0.130  Sum_probs=222.8

Q ss_pred             CCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe
Q 006126          242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS  320 (660)
Q Consensus       242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s  320 (660)
                      |+-.+++.||.. |.++           +|+|||++|++|+.||+|++||+.+    +..... +. .+|...|.+++|+
T Consensus         2 g~~~~~~~GH~~~V~~l-----------~~s~dg~~l~s~s~Dg~v~vWd~~~----~~~~~~-~~-~~h~~~v~~v~~~   64 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITAL-----------SSSADGKTLFSADAEGHINSWDIST----GISNRV-FP-DVHATMITGIKTT   64 (299)
T ss_dssp             TEEEEEECCCSSCEEEE-----------EECTTSSEEEEEETTSCEEEEETTT----CCEEEC-SS-CSCSSCEEEEEEC
T ss_pred             CccceEcCCCCCCcEEE-----------EECCCCCEEEEEcCCCeEEEEECCC----CcEEEE-Ec-CCCCCcEEEEEee
Confidence            344577888887 6665           9999999999999999999999974    444432 32 2489999999999


Q ss_pred             cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEE
Q 006126          321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKIS  398 (660)
Q Consensus       321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~  398 (660)
                      |+|+ +++++.|+.+++|+.......                ......    ..+...+.+++|+  +.++++++++.+.
T Consensus        65 ~~g~-~~~~~~d~~v~~~~~~~~~~~----------------~~~~~~----~~~~~~~~~~~~s~~g~~~~~~~~~~i~  123 (299)
T d1nr0a2          65 SKGD-LFTVSWDDHLKVVPAGGSGVD----------------SSKAVA----NKLSSQPLGLAVSADGDIAVAACYKHIA  123 (299)
T ss_dssp             TTSC-EEEEETTTEEEEECSSSSSSC----------------TTSCCE----EECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred             ccce-eecccceeeEEEeccCCcccc----------------cccccc----cccccccccccccccccccccccccccc
Confidence            9998 567778999999987654320                000000    1467788999999  6777777799999


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee-EeeccCCCeEEEEEeCCCCEEEEEeC
Q 006126          399 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGA  476 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~  476 (660)
                      +|+...  .....  ....+.+++|+|++ .+++|+.|+.|++||+++++... ....|...|++++|+|++++|++++.
T Consensus       124 ~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         124 IYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             EEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccc--ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999543  33322  33457899999999 99999999999999998876554 34468999999999999999999999


Q ss_pred             CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC-CCCeE
Q 006126          477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM-DLPIT  554 (660)
Q Consensus       477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~  554 (660)
                      |+.|++||+.++....  ... ...+|.   ..|++++|+|++++|++ +.|+.|++||++++.....+....| ...+.
T Consensus       200 d~~i~~~~~~~~~~~~--~~~-~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         200 SRKVIPYSVANNFELA--HTN-SWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             TSCEEEEEGGGTTEES--CCC-CCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             cccccccccccccccc--ccc-cccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            9999999998754321  112 344566   68999999999999999 5899999999988765444333333 45566


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEECC
Q 006126          555 YATYSCDGKCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       555 ~~~~s~dg~~l~sg~~dg~I~iwd~~  580 (660)
                      .+. ++++++|++|+.||.|++||+.
T Consensus       274 ~~~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVI-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEE-EEETTEEEEEETTSCEEEEECC
T ss_pred             EEE-ECCCCEEEEEeCCCEEEEEecc
Confidence            554 5677899999999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=281.75  Aligned_cols=306  Identities=12%  Similarity=0.129  Sum_probs=227.0

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .+++||++||+|+.||+|+|||+.+    +++.. ++.+  |.++|.+++|+|+ .+|++|+.||.|++|++........
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~~----~~~~~-~l~~--H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~   89 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSIN----KKFLL-QLSG--HDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV   89 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTT----TEEEE-EEEC--CSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCC----CcEEE-EEEC--CCCCEEEEEEcCC-CEEEEEecccccccccccccccccc
Confidence            4567899999999999999999984    44333 2443  9999999999986 5799999999999999877654111


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-------------
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------------  412 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------------  412 (660)
                                           .....+........+.  +.++++++ |+.|++||+.++.......             
T Consensus        90 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  148 (355)
T d1nexb2          90 ---------------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  148 (355)
T ss_dssp             ---------------------ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTT
T ss_pred             ---------------------cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccc
Confidence                                 0100222333444455  66788888 9999999998765433221             


Q ss_pred             ----------CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126          413 ----------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC  481 (660)
Q Consensus       413 ----------~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  481 (660)
                                .|...+  ..+.+++ .++++..|+.|++||+.+++.+....++...+.++.|+|++..+++++.|+.|+
T Consensus       149 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  226 (355)
T d1nexb2         149 ENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR  226 (355)
T ss_dssp             TCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEE
Confidence                      122222  3455667 899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEE-EEEc
Q 006126          482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYS  559 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s  559 (660)
                      +||++++..     +. ...+|.   ..|.++++++  ++|++ +.||.|++||++++......    |...+.+ ..++
T Consensus       227 i~d~~~~~~-----~~-~~~~h~---~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~  291 (355)
T d1nexb2         227 IWDLENGEL-----MY-TLQGHT---ALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSY----HHTNLSAITTFY  291 (355)
T ss_dssp             EEETTTCCE-----EE-EECCCS---SCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEE----ECTTCCCCCEEE
T ss_pred             eeecccccc-----cc-cccccc---cccccccccc--ceeeeeecccccccccccccceeccc----ccCCceEEEEEc
Confidence            999998543     33 455777   6899998874  57887 58999999999888765444    2344444 4567


Q ss_pred             cCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          560 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       560 ~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      ++++++++| .||.|+|||+++++++....      .+| ...|.  +++|+| + .++++++.||+++||..
T Consensus       292 ~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~------~~~-~~~V~--~v~~~~-~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         292 VSDNILVSG-SENQFNIYNLRSGKLVHANI------LKD-ADQIW--SVNFKG-K-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             ECSSEEEEE-ETTEEEEEETTTCCBCCSCT------TTT-CSEEE--EEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred             CCCCEEEEE-eCCEEEEEECCCCCEEEEEe------cCC-CCCEE--EEEEcC-C-eEEEEEECCCcEEEEEE
Confidence            788877766 58999999999998764322      144 44455  999999 5 57888999999777643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-32  Score=275.33  Aligned_cols=290  Identities=13%  Similarity=0.125  Sum_probs=217.1

Q ss_pred             EecCCCCEEEEEeCCC-cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec--CCCEEEEEECCCcEEEEeccCCce
Q 006126          269 TSLPDADSAVCAKSLE-KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp--dg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .|+|+|+.|+.++.+. .++.|+...... ....  .+.++ |...|++++|+|  +|++|++|+.||+|+|||+.....
T Consensus        24 ~~~~~~~~la~~~~~~~~i~~~~~~~~~~-~~~~--~~~gh-~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~   99 (325)
T d1pgua1          24 SYDPTTNAIAYPCGKSAFVRCLDDGDSKV-PPVV--QFTGH-GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE   99 (325)
T ss_dssp             EEETTTTEEEEEETTEEEEEECCSSCCSS-CSEE--EECTT-TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             EECCCCCEEEEEeCCCEEEEEEeCCCCCc-cceE--EEeCC-CCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcc
Confidence            8999999999887664 467777653211 1122  23331 357899999998  678999999999999999754432


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP  425 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp  425 (660)
                      ...                  .                                    .+.....+..|..+|.+++|++
T Consensus       100 ~~~------------------~------------------------------------~~~~~~~~~~~~~~v~~v~~s~  125 (325)
T d1pgua1         100 SNS------------------V------------------------------------EVNVKSEFQVLAGPISDISWDF  125 (325)
T ss_dssp             GTE------------------E------------------------------------EEEEEEEEECCSSCEEEEEECT
T ss_pred             eee------------------e------------------------------------ecccccccccccCcEEEEEECC
Confidence            000                  0                                    0111223456788899999999


Q ss_pred             CC-eEEEEe--CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126          426 QD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       426 ~~-~l~s~~--~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                      ++ .+++++  .++.+++|+..+++.+..+.+|...|.+++|+|++.+ +++++.|+.+++||...++....  .. ...
T Consensus       126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~--~~-~~~  202 (325)
T d1pgua1         126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS--DR-THH  202 (325)
T ss_dssp             TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--EC-SSS
T ss_pred             CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccccccee--cc-ccc
Confidence            99 776665  4678999999999999999999999999999998865 77899999999999988543221  11 223


Q ss_pred             ccCCCCCCeEEEEEecC-CcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc---cCCCEEEEEecCCeEEE
Q 006126          502 GLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS---CDGKCIYVSCKSGHVKV  576 (660)
Q Consensus       502 ~~~~~~~~v~~~~~sp~-~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~dg~~l~sg~~dg~I~i  576 (660)
                      +|.   ..|.+++|+|+ +.++++ +.|+.|++||+++++.+..+..  |..++..+.|+   |+|++|++++.|+.|+|
T Consensus       203 ~~~---~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~--~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         203 KQG---SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED--DQEPVQGGIFALSWLDSQKFATVGADATIRV  277 (325)
T ss_dssp             CTT---CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB--TTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             CCC---CccEEeeeccccceeccccccccceeeeeeccccccccccc--cccccccceeeeeccCCCEEEEEeCCCeEEE
Confidence            444   68999999997 577777 5899999999999999988865  45555544444   78999999999999999


Q ss_pred             EECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126          577 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       577 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      ||+++++++..+..+     ++ .......++.|.+  +.+|+++|.||+|+|||+
T Consensus       278 wd~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         278 WDVTTSKCVQKWTLD-----KQ-QLGNQQVGVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTTTEEEEEEECC-----TT-CGGGCEEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EECCCCCEEEEEEec-----CC-cccCeEEEEEECC--CCEEEEEECCCEEEEEEC
Confidence            999999999887743     21 2223333455555  458999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-29  Score=256.65  Aligned_cols=307  Identities=14%  Similarity=0.109  Sum_probs=229.6

Q ss_pred             CCCCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEE
Q 006126          239 NQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL  317 (660)
Q Consensus       239 ~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~  317 (660)
                      ..++..+..+.+|.. |.++           .|+|+ .+|++|+.||+|++|+...    ...... .....+...+...
T Consensus        40 ~~~~~~~~~l~~H~~~V~~l-----------~~s~~-~~l~s~s~D~~i~iw~~~~----~~~~~~-~~~~~~~~~~~~~  102 (355)
T d1nexb2          40 SINKKFLLQLSGHDGGVWAL-----------KYAHG-GILVSGSTDRTVRVWDIKK----GCCTHV-FEGHNSTVRCLDI  102 (355)
T ss_dssp             TTTTEEEEEEECCSSCEEEE-----------EEETT-TEEEEEETTCCEEEEETTT----TEEEEE-ECCCSSCEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEE-----------EEcCC-CEEEEEecccccccccccc----cccccc-ccccccccccccc
Confidence            345667777777776 5554           78885 5899999999999999984    333322 2222245566778


Q ss_pred             EEecCCCEEEEEECCCcEEEEeccCCceeeeeec-cceeEEEecCCC-CceeeecccCCCCCCeEEEEEeCCEEEEEe-C
Q 006126          318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN-VNMESQLYQPSS-KLVMTNDIAADPKDSISCFALRGSHLFSAS-G  394 (660)
Q Consensus       318 ~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-d  394 (660)
                      .+++++.++++++.|+.|++|++........... .......+.... .......  ..|...+......+++++++. |
T Consensus       103 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~d  180 (355)
T d1nexb2         103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL--RGHMASVRTVSGHGNIVVSGSYD  180 (355)
T ss_dssp             EEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE--ECCSSCEEEEEEETTEEEEEETT
T ss_pred             ccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee--eeccccccccccccceeeeeccc
Confidence            8899999999999999999999987654332111 111111111111 1111111  146777777666688999998 9


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS  473 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  473 (660)
                      +.|++||+.+++.+....++...+.++.++|++ .+++++.|+.|++||+.++..+..+.+|...|.++.|+  +++|++
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~  258 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVS  258 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEE
T ss_pred             ceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeee
Confidence            999999999999999999999999999999999 99999999999999999999999999999999999986  479999


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE-EEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCC
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP  552 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  552 (660)
                      ++.||.|++||++++..        ....|.   ..+.+ ..+++++.+++++.|+.|++||+++++++..... .|...
T Consensus       259 ~~~dg~i~iwd~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~-~~~~~  326 (355)
T d1nexb2         259 AAADGSIRGWDANDYSR--------KFSYHH---TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL-KDADQ  326 (355)
T ss_dssp             ECTTSEEEEEETTTCCE--------EEEEEC---TTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTT-TTCSE
T ss_pred             eecccccccccccccce--------eccccc---CCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEec-CCCCC
Confidence            99999999999988532        122333   23444 4567888888888999999999999998865433 46889


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          553 ITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       553 v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      |.+++|+|+ .++++++.||.++||.+
T Consensus       327 V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         327 IWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            999999987 57888899998776643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=252.15  Aligned_cols=261  Identities=11%  Similarity=0.063  Sum_probs=203.7

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS  387 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~  387 (660)
                      ||..+|.+++|+|    |++|+.||+|++||+.+...                            +|...|.+++++ +.
T Consensus        11 gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~----------------------------~h~~~V~~~~~~~~~   58 (287)
T d1pgua2          11 GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ----------------------------DHSNLIVSLDNSKAQ   58 (287)
T ss_dssp             CCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC----------------------------CCCSCEEEEECCSTT
T ss_pred             CCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC----------------------------CCCCCEEEEEecCCC
Confidence            4999999999988    89999999999998754432                            699999999999 88


Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL  466 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp  466 (660)
                      .+++++ |++|++|++...+       ....+.++++++++.++..+.++.+.+|+..+++.+..+..+ ..+  .++++
T Consensus        59 ~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~  128 (287)
T d1pgua2          59 EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL  128 (287)
T ss_dssp             CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE
T ss_pred             eEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-cee--eeeec
Confidence            889999 9999999975422       234567888999994444456777889999999888877643 333  45677


Q ss_pred             CCCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeee
Q 006126          467 SLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       467 ~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~  544 (660)
                      ++..+++++.|+ .+++|++.....     .......+.   ..+++++|+|++.+|+++ .||.|++||+.++......
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~-----~~~~~~~~~---~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  200 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEV-----SFDLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR  200 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEE-----EEECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred             cCcceeeeccccceeeeeeccccce-----eeeeeeccC---CceeEEEeccCccccccccccccccceeeccccccccc
Confidence            888888888775 799999976332     111233344   689999999999999995 8999999999988776543


Q ss_pred             cCCCCCCCeEEEEEccC----------CCEEEEEecCCeEEEEECCCC-eeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126          545 VPDKMDLPITYATYSCD----------GKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~d----------g~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      .. .|...|.+++|+|+          +.++++|+.|+.|+|||++++ +.+..+.       || ...+.  +++|+| 
T Consensus       201 ~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~-------~h-~~~V~--~v~~~~-  268 (287)
T d1pgua2         201 WA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-------AH-KDGVN--NLLWET-  268 (287)
T ss_dssp             SC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-------SS-TTCEE--EEEEEE-
T ss_pred             cc-ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC-------CC-CCCeE--EEEECC-
Confidence            32 47899999999875          468999999999999999774 4444433       45 44455  999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeC
Q 006126          614 EPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       614 d~~~l~s~s~Dg~v~iw~~  632 (660)
                      ++ .|+|++.||+|++|++
T Consensus       269 ~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT-EEEEEETTSCEEEEEE
T ss_pred             CC-EEEEEECCCeEEEEEE
Confidence            64 6899999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-29  Score=258.89  Aligned_cols=260  Identities=9%  Similarity=0.035  Sum_probs=190.4

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|+++++++  ++++++|.|++|+||+....+....              ........   .|...+..+...   
T Consensus        12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~~~~   72 (393)
T d1sq9a_          12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP--------------KDKSYSHF---VHKSGLHHVDVLQAI   72 (393)
T ss_dssp             CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG--------------GGGEEEEE---CCTTCEEEEEEEEEE
T ss_pred             cccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcc--------------cceeEeee---eccCCceEeeeEeee
Confidence            5999999999864  6999999999999999765542110              00011110   233333333221   


Q ss_pred             ------CCEEEEEe-CCcEEEEECCCCeEE-----EEEc-----CCCCCeEEEEEcCC-----C-eEEEEeCCCeEEEEe
Q 006126          386 ------GSHLFSAS-GGKISIFSLETFQTL-----ATFA-----NPPPIATYFILLPQ-----D-LFAFGFDDSSILVHC  442 (660)
Q Consensus       386 ------~~~l~s~~-dg~I~iwd~~~~~~~-----~~~~-----~~~~~v~~v~~sp~-----~-~l~s~~~d~~I~iwd  442 (660)
                            +.++++++ ||.|++|++......     ....     .+...+..++|.++     + .+++++.||.+++|+
T Consensus        73 ~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~  152 (393)
T d1sq9a_          73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  152 (393)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             ccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence                  34677888 999999997543211     1111     23455777888765     3 789999999999999


Q ss_pred             CCCCc------------------eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126          443 PCTKK------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       443 ~~~~~------------------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  504 (660)
                      +....                  .......+...+.+++|+|++ +|++|+.|++|++||+.+++............+|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~  231 (393)
T d1sq9a_         153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  231 (393)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccccccc
Confidence            75321                  011112355678999999998 88999999999999999987665444443556777


Q ss_pred             CCCCCeEEEEEecCCcEEEE-EecC---cEEEEeCCCCceeeeecC-----------CCCCCCeEEEEEccCCCEEEEEe
Q 006126          505 PETTIVNHIQFHPDQIHLLS-IHEG---QIDVYEAPTLNHTSQLVP-----------DKMDLPITYATYSCDGKCIYVSC  569 (660)
Q Consensus       505 ~~~~~v~~~~~sp~~~~l~~-~~d~---~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~s~dg~~l~sg~  569 (660)
                         ..|.+++|+|+|++|++ +.|+   .|++||+++++.+..+..           .+|...|++++|+||+++|++|+
T Consensus       232 ---~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         232 ---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             ---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ---ceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence               79999999999999999 4665   499999999998877642           14788999999999999999999


Q ss_pred             cCCeEEEEECCCCeeEEEeecc
Q 006126          570 KSGHVKVFDTSTLELRCQINLT  591 (660)
Q Consensus       570 ~dg~I~iwd~~~~~~~~~~~~~  591 (660)
                      .|+.|+|||+.+++++..+..|
T Consensus       309 ~D~~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         309 WDGKLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEECCCCCEEEEECCc
Confidence            9999999999999999998744

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.7e-28  Score=243.32  Aligned_cols=280  Identities=17%  Similarity=0.174  Sum_probs=219.2

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCE
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH  388 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  388 (660)
                      ||.+.|.+ +++++|++||||+.||+|+|||+.+++.                     +..+.  +|...|.+++|++++
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~---------------------~~~~~--~h~~~V~~v~~~~~~   69 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------LRTLV--GHTGGVWSSQMRDNI   69 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE---------------------EEECC--CCSSCEEEEEEETTE
T ss_pred             CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCE---------------------EEEEe--CCCCCEEEEEeCCCc
Confidence            49999876 4778899999999999999998876653                     22222  799999999999779


Q ss_pred             EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126          389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS  467 (660)
Q Consensus       389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~  467 (660)
                      |++++ |+.+++|+............+...+......+. .+..+..|+.+.+|+..+++....+..+......  +.+.
T Consensus        70 l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~  146 (342)
T d2ovrb2          70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYD  146 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEEC
T ss_pred             cccceecccccccccccccceecccccceeEeeeecccc-cccccccceeEEEeecccccceeeeeccccccee--eccc
Confidence            99999 999999999998888777777777766554443 7788899999999999999888777655444333  4456


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecC
Q 006126          468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~  546 (660)
                      ...+++++.|+.|++||.+....     +. ...+|.     .....+++++.++++ +.|+.|++||++.++++..+..
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~-----~~-~~~~~~-----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~  215 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETC-----LH-TLQGHT-----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG  215 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEE-----EE-EECCCS-----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             cceeeeecCCCeEEEeeccccee-----eE-EEcCcc-----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc
Confidence            67889999999999999988442     23 344554     334556667889998 5999999999999999888865


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe
Q 006126          547 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR  626 (660)
Q Consensus       547 ~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~  626 (660)
                        |...+.+++++  +++|++|+.||.|++||+...+....+..+       ..+...+.++.++   ++++++|+.||+
T Consensus       216 --~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~s~s~Dg~  281 (342)
T d2ovrb2         216 --HQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP-------NKHQSAVTCLQFN---KNFVITSSDDGT  281 (342)
T ss_dssp             --CCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST-------TSCSSCEEEEEEC---SSEEEEEETTSE
T ss_pred             --cccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccc-------ceeeeceeecccC---CCeeEEEcCCCE
Confidence              57788877765  579999999999999999998887776532       2333343456554   579999999999


Q ss_pred             EEEEeCCCCceecc
Q 006126          627 VHVIEPLESEVEWG  640 (660)
Q Consensus       627 v~iw~~~~~~~~w~  640 (660)
                      |+|||+.+++....
T Consensus       282 i~iwd~~tg~~i~~  295 (342)
T d2ovrb2         282 VKLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEEETTTCCEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            99999999987543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=2.4e-30  Score=265.47  Aligned_cols=312  Identities=11%  Similarity=0.029  Sum_probs=231.7

Q ss_pred             EecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC--cEEEEeccCCce
Q 006126          269 TSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA--THKLWKWQSNKQ  345 (660)
Q Consensus       269 ~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg--~i~vw~~~~~~~  345 (660)
                      .||| ||+++|+++. |.|.+||..+    +.+.++     +|...|.+++|+|||++|++++.+.  .+++|+..++..
T Consensus         9 ~fSP~dG~~~a~~~~-g~v~v~d~~~----~~~~~~-----~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           9 DFSPLDGDLIAFVSR-GQAFIQDVSG----TYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEECGGGCEEEEET-TEEEEECTTS----SBEEEC-----SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             cccCCCCCEEEEEEC-CeEEEEECCC----CcEEEc-----cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            8999 9999999875 7999999974    555553     3899999999999999998877653  677777655432


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                                           .+..   .|...|.+++|+  +++|++++ ++.+++|++.+++....+..+...+.+++
T Consensus        79 ---------------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (360)
T d1k32a3          79 ---------------------EKFE---ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT  134 (360)
T ss_dssp             ---------------------EECC---CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE
T ss_pred             ---------------------EEee---CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchh
Confidence                                 2221   689999999999  88999999 89999999999999999999999999999


Q ss_pred             EcCCC-eEEEEe----------CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee
Q 006126          423 LLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL  491 (660)
Q Consensus       423 ~sp~~-~l~s~~----------~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~  491 (660)
                      |+|+| +|+.+.          .++.+++||+.+++.... ..+...+..+.|+|+|++|++++.|+.+.+||.......
T Consensus       135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             hccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEccccccccee
Confidence            99999 777543          344799999998766544 447778899999999999999999999999998764322


Q ss_pred             ece--eeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC--
Q 006126          492 CSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD--  561 (660)
Q Consensus       492 ~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d--  561 (660)
                      ...  ... ....+.   ..+..+.|++++..++++ .+     ..+..++...+...... .  +...+..+.+.+.  
T Consensus       214 ~~~~~~~~-~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~  286 (360)
T d1k32a3         214 FEVVSKPF-VIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII-P--LESSILIYSVPVHGE  286 (360)
T ss_dssp             CCSCBEEE-EEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEE-E--CSSEEEEEECCCCCS
T ss_pred             eccccceE-EEeccc---CccccceECCCcCcccccceeecccccceeecccCcCceeEee-e--cCCCceEEEEEecCC
Confidence            111  111 111222   344456677777766552 21     23445555554433222 2  2444555555444  


Q ss_pred             -CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          562 -GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       562 -g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                       +.++++++.++.|++||+.+++....            ...+  .+++|+| ||++|++++.||+|++|++.+++.
T Consensus       287 ~~~~~~~~~~~~~i~~~d~~~~~~~~~------------~~~v--~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         287 FAAYYQGAPEKGVLLKYDVKTRKVTEV------------KNNL--TDLRLSA-DRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCCEEEE------------EEEE--EEEEECT-TSCEEEEEETTSCEEEEESSCTTS
T ss_pred             CeeEEEecCCCCEEEEEECCCCeEEEe------------cCCc--CEEEECC-CCCEEEEEECCCeEEEEECCCCCc
Confidence             34678888999999999998875432            1124  4899999 899999999999999999998865

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.5e-29  Score=251.81  Aligned_cols=287  Identities=12%  Similarity=0.104  Sum_probs=211.2

Q ss_pred             CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126          309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---  385 (660)
Q Consensus       309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  385 (660)
                      +|.+.|++++|+|+|++||+|+.||+|+|||+.......                 .+....   +|..+|.+++|+   
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-----------------~~~~~~---~h~~~V~~v~f~~~~   68 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----------------DLLQSL---RYKHPLLCCNFIDNT   68 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----------------EEEEEE---ECSSCEEEEEEEESS
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-----------------EEEEec---CCCCCEEEEEEeCCC
Confidence            499999999999999999999999999999987654311                 111111   599999999998   


Q ss_pred             CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe----ecc--C
Q 006126          386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL----KGH--Q  456 (660)
Q Consensus       386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~----~~~--~  456 (660)
                      +.+|++|+ ||.|++|++..+........+.... ....+.+++ .+++++.|+.+++||++++......    ..+  .
T Consensus        69 ~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~  148 (342)
T d1yfqa_          69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             CCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccc
Confidence            44788998 9999999999887777766554443 445556666 9999999999999998765433222    222  2


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEe
Q 006126          457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYE  534 (660)
Q Consensus       457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd  534 (660)
                      .....+.+.+++..+++++.|+.|++||++..........   ...+.   ..+.+..+.+ ++..+++ +.||.+.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~v~~  222 (342)
T d1yfqa_         149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE---ESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE---ECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             ceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeee---ecccc---cceeeeEeecCCCCEEEeecCCCeEEEEE
Confidence            3445667788899999999999999999987543222111   12222   3455555554 5666776 5899999999


Q ss_pred             CCCCceeee-------------ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126          535 APTLNHTSQ-------------LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL  601 (660)
Q Consensus       535 ~~~~~~~~~-------------~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~  601 (660)
                      .........             .....|...+++++|+|++++|++|+.||.|++||+.+++.+..+..         .+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~---------~~  293 (342)
T d1yfqa_         223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK---------FN  293 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC---------CS
T ss_pred             ecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC---------CC
Confidence            764322111             01123567899999999999999999999999999999998877642         12


Q ss_pred             ccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ...  .++|+| +++++++++.|+++++|...
T Consensus       294 ~~~--~~~~s~-~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         294 EDS--VVKIAC-SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             SSE--EEEEEE-CSSEEEEEEECTHHHHCSSS
T ss_pred             CCE--EEEEEe-CCCEEEEEEcCCcEEEeeee
Confidence            233  678888 78999999999988888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.2e-28  Score=241.95  Aligned_cols=266  Identities=12%  Similarity=0.076  Sum_probs=207.1

Q ss_pred             CCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe
Q 006126          242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS  320 (660)
Q Consensus       242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s  320 (660)
                      .++++++.||.. |.++           .|+|    |++|+.||+|++||..+    .      .  .+|...|.+++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l-----------~~s~----l~sgs~Dg~v~~Wd~~~----~------~--~~h~~~V~~~~~~   55 (287)
T d1pgua2           3 DEVLKTISGHNKGITAL-----------TVNP----LISGSYDGRIMEWSSSS----M------H--QDHSNLIVSLDNS   55 (287)
T ss_dssp             EEEEEEECCCSSCEEEE-----------ETTT----TEEEETTSCEEETTTTE----E------E--CCCCSCEEEEECC
T ss_pred             cceeEEECCCCCceEEE-----------EECc----EEEEeCCCeEEEEECCC----C------C--CCCCCCEEEEEec
Confidence            356788899988 6665           6666    89999999999999863    1      1  2389999999999


Q ss_pred             cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC-EEEEEeCCcEE
Q 006126          321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSASGGKIS  398 (660)
Q Consensus       321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~-~l~s~~dg~I~  398 (660)
                      +++. +++++.|+++++|+.....                              ....+.++++. +. .++++.++.+.
T Consensus        56 ~~~~-~~s~s~D~~v~~w~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (287)
T d1pgua2          56 KAQE-YSSISWDDTLKVNGITKHE------------------------------FGSQPKVASANNDGFTAVLTNDDDLL  104 (287)
T ss_dssp             STTC-CEEEETTTEEEETTEEEEE------------------------------CSSCEEEEEECSSSEEEEEETTSEEE
T ss_pred             CCCe-EEEEeeccccccccccccc------------------------------cccceeeeeeccCCceEEEeecccce
Confidence            8765 7999999999999864322                              23346677777 44 45555588999


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-eEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEEEe
Q 006126          399 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSG  475 (660)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s  475 (660)
                      +|+..+++.+..+..+..   ..++++++ .+++++.++ .|++|++...+....+. .|...+++++|+|++.+|++|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  181 (287)
T d1pgua2         105 ILQSFTGDIIKSVRLNSP---GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD  181 (287)
T ss_dssp             EEETTTCCEEEEEECSSC---EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeccceeeeeeccccce---eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc
Confidence            999999998888765432   34567777 777777664 79999998766555554 4778999999999999999999


Q ss_pred             CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC----------CcEEEE-EecCcEEEEeCCCCc-eeee
Q 006126          476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----------QIHLLS-IHEGQIDVYEAPTLN-HTSQ  543 (660)
Q Consensus       476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----------~~~l~~-~~d~~i~iwd~~~~~-~~~~  543 (660)
                      .||.|++||+.++...     .....+|.   ..|.+++|+|+          +.++++ +.|++|++||++++. .+..
T Consensus       182 ~dg~i~i~d~~~~~~~-----~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         182 VMGKILLYDLQSREVK-----TSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             TTSCEEEEETTTTEEE-----ECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             ccccccceeecccccc-----cccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            9999999999985432     22345677   68999999875          457888 589999999997744 4444


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      +.  .|...|++++|+|++ .+++++.||.|++|++
T Consensus       254 ~~--~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LN--AHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT--SSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eC--CCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            43  478999999999986 5889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-26  Score=228.81  Aligned_cols=265  Identities=15%  Similarity=0.174  Sum_probs=205.5

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL  389 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l  389 (660)
                      |...|+|++  +||++||+|+.||+|+|||+.+++.                     +..+.  +|...|.+++|++++|
T Consensus        14 ~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~---------------------~~~l~--~H~~~V~~v~~~~~~l   68 (293)
T d1p22a2          14 TSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLEC---------------------KRILT--GHTGSVLCLQYDERVI   68 (293)
T ss_dssp             SCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCE---------------------EEEEC--CCSSCEEEEECCSSEE
T ss_pred             CCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcE---------------------EEEEe--cCCCCEeeeeccccee
Confidence            788999865  5899999999999999998876653                     22221  7999999999999999


Q ss_pred             EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce---eeEeeccCCCeEEEEE
Q 006126          390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQNRITCLAY  464 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~---~~~~~~~~~~v~~l~~  464 (660)
                      ++|+ |+.|++|++..+........+.....  .+.+.. .++++..++.+.+||..+...   ...+..|...+.++.+
T Consensus        69 ~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  146 (293)
T d1p22a2          69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  146 (293)
T ss_dssp             EEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred             ecccccccccccccccccccccccccccccc--cccccccceeecccccceeEeecccccccccccccccccccccccee
Confidence            9999 99999999999988777765554433  344455 899999999999999887653   3445668888888777


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~  543 (660)
                      .+  ..+++++.|+.|++||+++++.     +. ...++.   ..+..+.++  +.++++ +.|+.|++||+++...+..
T Consensus       147 ~~--~~~~~~s~d~~i~~~d~~~~~~-----~~-~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~  213 (293)
T d1p22a2         147 DD--KYIVSASGDRTIKVWNTSTCEF-----VR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV  213 (293)
T ss_dssp             ET--TEEEEEETTSEEEEEETTTCCE-----EE-EEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cc--cccccccCCCceeeecCCCCcE-----EE-EEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeee
Confidence            64  5788999999999999998643     22 234554   467676665  567777 5999999999999998888


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC---------eeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL---------ELRCQINLTAYAQPGTISLELYPLVIAAHPLE  614 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~---------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d  614 (660)
                      +..  +...+.  .+++++.+|++|+.||.|++||+.++         ..+..+.       +| ...|+  +++|+|  
T Consensus       214 ~~~--~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~H-~~~V~--~v~~d~--  277 (293)
T d1p22a2         214 LEG--HEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EH-SGRVF--RLQFDE--  277 (293)
T ss_dssp             ECC--CSSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-------CC-SSCCC--CEEECS--
T ss_pred             ecc--cceeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec-------CC-CCCEE--EEEEcC--
Confidence            754  456665  45678899999999999999997543         2344443       45 44566  788854  


Q ss_pred             CCEEEEEeCCCeEEEEe
Q 006126          615 PNRIALGLTNGRVHVIE  631 (660)
Q Consensus       615 ~~~l~s~s~Dg~v~iw~  631 (660)
                       .+|+|||.||+|+|||
T Consensus       278 -~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 -FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -SCEEECCSSSEEEEEC
T ss_pred             -CEEEEEecCCEEEEeC
Confidence             6899999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-27  Score=241.08  Aligned_cols=241  Identities=12%  Similarity=0.087  Sum_probs=180.5

Q ss_pred             eEecC--CCCEEEEEeCCCcEEEEeccCcCCCcceeee---ecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126          268 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTL---LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS  342 (660)
Q Consensus       268 ~~~sp--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~  342 (660)
                      +.|+|  +|++|++|+.||+|+|||+............   .+  ..|.++|.+++|+|+|+++++++.+.         
T Consensus        69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~~~---------  137 (325)
T d1pgua1          69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF--QVLAGPISDISWDFEGRRLCVVGEGR---------  137 (325)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE--ECCSSCEEEEEECTTSSEEEEEECCS---------
T ss_pred             EEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccc--ccccCcEEEEEECCCCCccceeeccc---------
Confidence            48987  6789999999999999999753222222110   11  22677888888888888877766421         


Q ss_pred             CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126          343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFI  422 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~  422 (660)
                                                                         ++.+.+|+..+++++..+.+|...|.+++
T Consensus       138 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  166 (325)
T d1pgua1         138 ---------------------------------------------------DNFGVFISWDSGNSLGEVSGHSQRINACH  166 (325)
T ss_dssp             ---------------------------------------------------SCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred             ---------------------------------------------------cceEEEEeecccccceeeeeccccccccc
Confidence                                                               22344555566677777888999999999


Q ss_pred             EcCCC--eEEEEeCCCeEEEEeCCCCceeeEe---eccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126          423 LLPQD--LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFL  496 (660)
Q Consensus       423 ~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  496 (660)
                      |+|++  .+++++.|+.|++||..+++....+   .+|...|.+++|+|+ +.++++++.|+.|++||+++++..     
T Consensus       167 ~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~-----  241 (325)
T d1pgua1         167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL-----  241 (325)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE-----
T ss_pred             ccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc-----
Confidence            99998  5788999999999999888766554   456788999999996 688999999999999999986533     


Q ss_pred             eeeeeccCCCCCCeEEEEEe---cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC-CCEEEEEecC
Q 006126          497 HSFQTGLVPETTIVNHIQFH---PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKS  571 (660)
Q Consensus       497 ~~~~~~~~~~~~~v~~~~~s---p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~~d  571 (660)
                      . ...+|.   ..+..+.|+   |+|++|++ +.|+.|+|||+++++++..+..+.+...+..+++.+. +.+|++|+.|
T Consensus       242 ~-~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  317 (325)
T d1pgua1         242 K-YIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD  317 (325)
T ss_dssp             E-ECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred             c-cccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC
Confidence            3 233454   344444444   68888888 6899999999999999998877555544445554433 3488999999


Q ss_pred             CeEEEEEC
Q 006126          572 GHVKVFDT  579 (660)
Q Consensus       572 g~I~iwd~  579 (660)
                      |.|+|||+
T Consensus       318 g~i~vwdl  325 (325)
T d1pgua1         318 GTLNFYEL  325 (325)
T ss_dssp             SCEEEEET
T ss_pred             CEEEEEEC
Confidence            99999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-26  Score=228.44  Aligned_cols=260  Identities=17%  Similarity=0.231  Sum_probs=199.6

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .+++||++||+|+.||+|+|||+.+    .++.. ++.+  |.+.|.+++|  ++++|++|+.||.|++|++..+.....
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~----~~~~~-~l~~--H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNT----LECKR-ILTG--HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSS----CCEEE-EECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCC----CcEEE-EEec--CCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence            4678999999999999999999984    44443 2544  9999999876  678999999999999999877654111


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCe---EEEEEcCCCCCeEEEEEc
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILL  424 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~---~~~~~~~~~~~v~~v~~s  424 (660)
                                           ..  .+.............++++. ++.+.+|+..+..   ....+..|...+.++.+.
T Consensus        91 ---------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          91 ---------------------LI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             ---------------------EC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred             ---------------------cc--ccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec
Confidence                                 00  12222222222266777777 8999999998754   344556788888877776


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126          425 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       425 p~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  504 (660)
                      ++ .+++++.|+.|++||+++++.+..+.++...+..+.++  +..+++++.||.|++||+++...     +. ...++.
T Consensus       148 ~~-~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-----~~-~~~~~~  218 (293)
T d1p22a2         148 DK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC-----LR-VLEGHE  218 (293)
T ss_dssp             TT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-----EE-EECCCS
T ss_pred             cc-ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccccee-----ee-eecccc
Confidence            55 67889999999999999999999999999999888775  56899999999999999998543     22 334444


Q ss_pred             CCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC---------CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126          505 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT---------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV  574 (660)
Q Consensus       505 ~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I  574 (660)
                         ..+.  .+++++.+|++ +.||.|++||+.+         ..++..+..  |...|++++|  ++++|++|+.||.|
T Consensus       219 ---~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--H~~~V~~v~~--d~~~l~s~s~Dg~i  289 (293)
T d1p22a2         219 ---ELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQF--DEFQIVSSSHDDTI  289 (293)
T ss_dssp             ---SCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             ---eeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC--CCCCEEEEEE--cCCEEEEEecCCEE
Confidence               3454  46678889988 5899999999753         234555543  7889999998  46789999999999


Q ss_pred             EEEE
Q 006126          575 KVFD  578 (660)
Q Consensus       575 ~iwd  578 (660)
                      +|||
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.5e-27  Score=245.99  Aligned_cols=278  Identities=11%  Similarity=0.092  Sum_probs=192.2

Q ss_pred             CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe---c----CCCEEEEEECCCcEEEEeccCCce
Q 006126          273 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS---H----SGDFLVALTQTATHKLWKWQSNKQ  345 (660)
Q Consensus       273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s---p----dg~~l~s~s~dg~i~vw~~~~~~~  345 (660)
                      .++++++++.|++|+|||............. .....|...+..+...   +    ++.++++++.||.+++|++.....
T Consensus        23 ~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~  101 (393)
T d1sq9a_          23 CNSFTVSCSGDGYLKVWDNKLLDNENPKDKS-YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE  101 (393)
T ss_dssp             CSSEEEEEETTSEEEEEESBCCTTCCGGGGE-EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred             eCCEEEEEECCCeEEEEECCCCCCCccccee-EeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCc
Confidence            4579999999999999997643211111110 1111255555444332   1    335788999999999999765443


Q ss_pred             eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-------CCEEEEEe-CCcEEEEECCCCe-----------
Q 006126          346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIFSLETFQ-----------  406 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------~~~l~s~~-dg~I~iwd~~~~~-----------  406 (660)
                      ....       ......   ..   ....+...+..++|.       +.++++++ ||.+++|++....           
T Consensus       102 ~~~~-------~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  168 (393)
T d1sq9a_         102 TKKV-------IFEKLD---LL---DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  168 (393)
T ss_dssp             TCCE-------EEEEEC---CS---CTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             eeee-------eccccc---ee---eeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence            1110       000000   00   001245567777776       35788888 9999999974211           


Q ss_pred             ----EEEEE---cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe------eccCCCeEEEEEeCCCCEEEE
Q 006126          407 ----TLATF---ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL------KGHQNRITCLAYSLSLNVLVS  473 (660)
Q Consensus       407 ----~~~~~---~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~------~~~~~~v~~l~~sp~~~~l~s  473 (660)
                          .....   ..+...+.+++|+|++.|++|+.|++|++||+.+++.+..+      .+|...|++++|+|+|++|++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  248 (393)
T d1sq9a_         169 PTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  248 (393)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             cceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeee
Confidence                11111   24456688999999998899999999999999998876544      468899999999999999999


Q ss_pred             EeCCCc---EEEEEcCCCeeeeceee-------eeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126          474 SGADAQ---LCVWDAVGWKKLCSKFL-------HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       474 ~s~dg~---i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~  542 (660)
                      |+.|++   |++||+++++.......       .....+|.   ..|++++|+|++++|++ +.|++|++||+++++++.
T Consensus       249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~---~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ecCCCCcceeeecccccceeeeeeccccccccceeeeeccc---CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence            999875   99999999765443211       11234787   79999999999999999 589999999999999999


Q ss_pred             eecCCCCCCCeE----EEEEccCCCEEEEEe
Q 006126          543 QLVPDKMDLPIT----YATYSCDGKCIYVSC  569 (660)
Q Consensus       543 ~~~~~~~~~~v~----~~~~s~dg~~l~sg~  569 (660)
                      ++.+  |...|.    .++|+|++..+++++
T Consensus       326 ~l~g--H~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         326 TLNM--HCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEC--CGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EECC--cCCcccCCccEEEECCCCCEEEEcc
Confidence            9875  454443    466777777665443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.3e-27  Score=236.46  Aligned_cols=281  Identities=11%  Similarity=0.052  Sum_probs=201.5

Q ss_pred             eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCcee
Q 006126          268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~  346 (660)
                      +.|+|+|++||+|+.||+|+|||+........+...    .+|.++|.+++|+|++ .+|++|+.||.|++|++......
T Consensus        17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~----~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~   92 (342)
T d1yfqa_          17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE----EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe----cCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence            499999999999999999999999753322333322    1389999999999875 58999999999999998766541


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE----EEEcCC--CCC
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL----ATFANP--PPI  417 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~----~~~~~~--~~~  417 (660)
                      ..                     .. ..+........+.  +..+++++ ++.+++||+.++...    .....+  ...
T Consensus        93 ~~---------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          93 QA---------------------LT-NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             EE---------------------CB-SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             cc---------------------cc-ccccccccccccccccccccccccccccceeeccccccceeeecccccccccce
Confidence            11                     00 0222333333333  77888888 999999998654322    222222  223


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE---eeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126          418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLC  492 (660)
Q Consensus       418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~---~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~  492 (660)
                      .....+.+++ .+++++.|+.|++||+..++....   ...+...+.+..+.+ ++..+++++.||.+.+|+........
T Consensus       151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~  230 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             eeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCccee
Confidence            4566777778 999999999999999987654432   233445566666655 67889999999999999987643211


Q ss_pred             cee----ee-----eeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC
Q 006126          493 SKF----LH-----SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG  562 (660)
Q Consensus       493 ~~~----~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg  562 (660)
                      ...    ..     ....+|.   ..+++++|+|++.+|++ +.||.|++||+++++.+..+..   ...+..++|+|+|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~---~~~~~~~~~s~~~  304 (342)
T d1yfqa_         231 NSSKRFAFRCHRLNLKDTNLA---YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK---FNEDSVVKIACSD  304 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSC---CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC---CSSSEEEEEEECS
T ss_pred             eccccceeeeeeeccCCCccc---ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC---CCCCEEEEEEeCC
Confidence            100    00     0112333   57899999999999999 5999999999999998887743   3455668889999


Q ss_pred             CEEEEEecCCeEEEEECC
Q 006126          563 KCIYVSCKSGHVKVFDTS  580 (660)
Q Consensus       563 ~~l~sg~~dg~I~iwd~~  580 (660)
                      +++++++.|+.+++|...
T Consensus       305 ~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         305 NILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             SEEEEEEECTHHHHCSSS
T ss_pred             CEEEEEEcCCcEEEeeee
Confidence            999999999988888654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=3.6e-24  Score=225.47  Aligned_cols=332  Identities=11%  Similarity=0.027  Sum_probs=219.7

Q ss_pred             ecCCCC--EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          270 SLPDAD--SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       270 ~spdg~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      ++.|.+  ++++++.||+|++||..+    +++... ++.   ...+..++|||||+++++++.|+++++||+.+.+...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t----~~~~~~-l~~---g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDS----KKIVKV-IDT---GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTT----CSEEEE-EEC---CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCC----CcEEEE-EeC---CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            344433  567888999999999985    444332 432   3569999999999999999999999999988776411


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCe-----
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIA-----  418 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v-----  418 (660)
                      .          ...      .  ...+|...+.+++|+  |+++++++  ++.+.+||..++.+...+..+...+     
T Consensus        98 ~----------~~i------~--~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~  159 (426)
T d1hzua2          98 V----------AEI------K--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  159 (426)
T ss_dssp             E----------EEE------E--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             E----------EEE------e--CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceee
Confidence            1          110      0  001344556666776  77776555  8999999999999888776554333     


Q ss_pred             ------EEEEEcCCC-e-EEEEeCCCeEEEEeCCCCcee-eEeeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCC
Q 006126          419 ------TYFILLPQD-L-FAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW  488 (660)
Q Consensus       419 ------~~v~~sp~~-~-l~s~~~d~~I~iwd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~  488 (660)
                            ..+.+++++ . +.+....+.+.+++...+... ....++...+..+.|+|++++++++.. +..+.++|..++
T Consensus       160 ~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence                  445556666 3 333334455666655544332 233457778899999999998877764 567899999997


Q ss_pred             eeeeceeeeeeeeccCCCCCCeEEEEEecCCc--EEEEE--ecCcEEEEeCCC-------CceeeeecCCCCCCCeEEEE
Q 006126          489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPITYAT  557 (660)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~--~d~~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~  557 (660)
                      +........     ..+  .......+.+.+.  ..+..  .++.+.+|+...       ++...++.+  |...+..++
T Consensus       240 ~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~  310 (426)
T d1hzua2         240 RLSALVDVG-----KTP--HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIK  310 (426)
T ss_dssp             EEEEEEECS-----SCC--CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEE
T ss_pred             cEEEEeccC-----Ccc--cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEE
Confidence            654332222     111  1222333433332  22222  567788887654       356666655  678899999


Q ss_pred             EccCCCEEEE-------EecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EE----eCCC
Q 006126          558 YSCDGKCIYV-------SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LG----LTNG  625 (660)
Q Consensus       558 ~s~dg~~l~s-------g~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~----s~Dg  625 (660)
                      |+|||++|++       ++.|++|+|||+.+++....+.+.... .++..+...+..++||| ||++++ ++    +.||
T Consensus       311 ~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~-~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~  388 (426)
T d1hzua2         311 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW-ADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSS  388 (426)
T ss_dssp             CCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH-HCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCC
T ss_pred             cCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchh-cccCCCCccEEEEEECC-CCCEEEEEEecCCCCCC
Confidence            9999999994       556889999999999877665432110 01112233455899999 898764 43    3678


Q ss_pred             eEEEEeCCCCcee
Q 006126          626 RVHVIEPLESEVE  638 (660)
Q Consensus       626 ~v~iw~~~~~~~~  638 (660)
                      .|+|||..+.+.+
T Consensus       389 ~i~v~D~~T~k~~  401 (426)
T d1hzua2         389 ALVVVDDKTLKLK  401 (426)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             eEEEEECCCCeEE
Confidence            9999999999753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.7e-21  Score=193.53  Aligned_cols=266  Identities=13%  Similarity=0.101  Sum_probs=202.4

Q ss_pred             EEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccceeE
Q 006126          278 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMES  356 (660)
Q Consensus       278 ~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~  356 (660)
                      ++++.|++|.+||+++   ......+.     ....+..++|+|||++|+ +++.++.|.+||+.+++.           
T Consensus         6 V~~~~~~~v~v~D~~t---~~~~~~i~-----~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-----------   66 (301)
T d1l0qa2           6 IANSESDNISVIDVTS---NKVTATIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------   66 (301)
T ss_dssp             EEETTTTEEEEEETTT---TEEEEEEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------
T ss_pred             EEECCCCEEEEEECCC---CeEEEEEE-----CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----------
Confidence            4677899999999985   22333333     345689999999999885 556689999998876654           


Q ss_pred             EEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEE
Q 006126          357 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFA  430 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~  430 (660)
                                +....  .+ ..+..++|+  +..+++++  ++.+.+|+..+++....+..+ ....++.|+|++  .++
T Consensus        67 ----------~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~  132 (301)
T d1l0qa2          67 ----------IATVP--AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYV  132 (301)
T ss_dssp             ----------EEEEE--CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEE
T ss_pred             ----------eeeee--cc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeee
Confidence                      11111  22 346788888  66665555  689999999999988888655 456789999999  556


Q ss_pred             EEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126          431 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI  509 (660)
Q Consensus       431 s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  509 (660)
                      ++..++.+.+|+..++..+..+..+ ..+..+.++|++..+++++.+ +.+.+|+........      ....+    ..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~  201 (301)
T d1l0qa2         133 TNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID------TVKVE----AA  201 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE------EEECS----SE
T ss_pred             eeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeee------ccccc----CC
Confidence            6777889999999999888887744 567889999999988887765 567777777643222      11122    46


Q ss_pred             eEEEEEecCCcEEEE-Ee---cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE-EEEecCCeEEEEECCCCee
Q 006126          510 VNHIQFHPDQIHLLS-IH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTSTLEL  584 (660)
Q Consensus       510 v~~~~~sp~~~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~sg~~dg~I~iwd~~~~~~  584 (660)
                      +..+++++++..+++ +.   ++.|++||+.+++.+..+..   ...+.+++|+|||++| ++++.|+.|++||+.++++
T Consensus       202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             cceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            788999999998876 33   36799999999998888754   4568999999999987 5677789999999999999


Q ss_pred             EEEeec
Q 006126          585 RCQINL  590 (660)
Q Consensus       585 ~~~~~~  590 (660)
                      +..+..
T Consensus       279 ~~~~~v  284 (301)
T d1l0qa2         279 TATMAV  284 (301)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            988763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=9.9e-21  Score=187.87  Aligned_cols=261  Identities=16%  Similarity=0.164  Sum_probs=200.8

Q ss_pred             EEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEE-Ee-CCcEEEEEC
Q 006126          327 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GGKISIFSL  402 (660)
Q Consensus       327 ~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s-~~-dg~I~iwd~  402 (660)
                      ++.+.|++|.+||+++++.                     +...   .....+..++|+  |++|++ ++ ++.|.+||+
T Consensus         6 V~~~~~~~v~v~D~~t~~~---------------------~~~i---~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~   61 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKV---------------------TATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE---------------------EEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             EEECCCCEEEEEECCCCeE---------------------EEEE---ECCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            4566789998888766653                     2222   133457889999  787754 44 799999999


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE-EeCCCc
Q 006126          403 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS-SGADAQ  479 (660)
Q Consensus       403 ~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s-~s~dg~  479 (660)
                      .+++.+..+..+. .+..++|++++  .++++..++.+.+|+..+++....+.. .....++.|+|++..++. +..++.
T Consensus        62 ~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          62 ATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             TTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccc
Confidence            9999999987665 46789999999  556677788999999999988888874 456788999999998754 556788


Q ss_pred             EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126          480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT  557 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  557 (660)
                      +.+|+..++.....      ...+    ..+..++++|++..++++  .++.+.+|+....+.......   ...+..++
T Consensus       140 ~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  206 (301)
T d1l0qa2         140 VSVINTVTKAVINT------VSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIA  206 (301)
T ss_dssp             EEEEETTTTEEEEE------EECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEE
T ss_pred             eeeeeccccceeee------cccC----CCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceee
Confidence            99999998653322      1222    468899999999998884  456788898877777666643   55678899


Q ss_pred             EccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE-EEEeCCCeEEEEeCC
Q 006126          558 YSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVIEPL  633 (660)
Q Consensus       558 ~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l-~s~s~Dg~v~iw~~~  633 (660)
                      |+++++.++.++.+   +.|++||+.+++....+..         ...  +.+++|+| ||++| ++++.|++|++||+.
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~---------~~~--~~~va~sp-dg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---------GPD--PAGIAVTP-DGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---------CSS--EEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcC---------CCC--EEEEEEeC-CCCEEEEEECCCCeEEEEECC
Confidence            99999988766543   6899999999998887753         122  34899999 88876 677889999999999


Q ss_pred             CCcee
Q 006126          634 ESEVE  638 (660)
Q Consensus       634 ~~~~~  638 (660)
                      +++..
T Consensus       275 t~~~~  279 (301)
T d1l0qa2         275 TNTIT  279 (301)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            99864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.9e-21  Score=204.28  Aligned_cols=323  Identities=10%  Similarity=-0.003  Sum_probs=207.3

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      -++++.+.||+|.|||..+    .++... ++.  | ..+..++|||||+++++++.||.+.+||+.+++....      
T Consensus        33 ~~~v~~~d~g~v~v~D~~t----~~v~~~-~~~--g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~------   98 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST----YEIKTV-LDT--G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV------   98 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT----CCEEEE-EEC--S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE------
T ss_pred             EEEEEEcCCCEEEEEECCC----CcEEEE-EeC--C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE------
Confidence            3468899999999999984    454443 432  3 4699999999999999999999999999877653111      


Q ss_pred             eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEEEECCCCeEEEEEcCC-----------CCCeE
Q 006126          355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANP-----------PPIAT  419 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l-~s~~-dg~I~iwd~~~~~~~~~~~~~-----------~~~v~  419 (660)
                          .      .+..  ..+|.+.+.+..|+  |++| ++++ ++.|++||..+++++..+..+           .....
T Consensus        99 ----~------~i~~--~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
T d1qksa2          99 ----A------EIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  166 (432)
T ss_dssp             ----E------EEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             ----E------EEec--CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCcee
Confidence                0      0000  00244445555666  7776 5566 899999999999998877543           34556


Q ss_pred             EEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeecee
Q 006126          420 YFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKF  495 (660)
Q Consensus       420 ~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~  495 (660)
                      .+.++|+|  .+++...++.|.+||..+++...... .+...+.++.|+|+|+++++++. ++.+.++|..+++......
T Consensus       167 ~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            78999999  56777788999999998877655443 35567889999999998877765 5679999998865543322


Q ss_pred             eeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126          496 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH  573 (660)
Q Consensus       496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~  573 (660)
                      .. ....|.   .......+...+...++.  .++.|.+|+......    .  .|...+....++|++..+++++.++.
T Consensus       247 ~g-~~~~~~---~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----~--~~~~~v~~~~~~~~g~~~~~~s~p~~  316 (432)
T d1qksa2         247 TG-GQTPHP---GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----P--DNAWKILDSFPALGGGSLFIKTHPNS  316 (432)
T ss_dssp             CS-SSSBCC---TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----T--TTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             cC-cccccc---CcccceecCCCCceecccccCCceEEecccccccc----c--ccccEEEEEEEcCCCCeEEEEecCCc
Confidence            22 111122   234445555555555554  467888888654321    0  12344555555555555555555555


Q ss_pred             EEEEECCCCee-------EEEeecccc------------------cCCCCcCcccceEEEEEecCCCCEEEEEe-----C
Q 006126          574 VKVFDTSTLEL-------RCQINLTAY------------------AQPGTISLELYPLVIAAHPLEPNRIALGL-----T  623 (660)
Q Consensus       574 I~iwd~~~~~~-------~~~~~~~~~------------------~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-----~  623 (660)
                      .++|+..+...       +........                  ...+| ..  .+..++|+| ||++++.+.     .
T Consensus       317 ~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~-~~--~v~~~~fS~-DG~~v~~S~~~~~~~  392 (432)
T d1qksa2         317 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG-QP--RVVQGEFNK-DGTEVWFSVWNGKDQ  392 (432)
T ss_dssp             SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS-CC--EEEEEEECT-TSSEEEEEEECCTTS
T ss_pred             cceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCC-CC--cEEEeEECC-CCCEEEEEEecCCCC
Confidence            55554332110       111110000                  00012 12  245899999 899875553     4


Q ss_pred             CCeEEEEeCCCCce
Q 006126          624 NGRVHVIEPLESEV  637 (660)
Q Consensus       624 Dg~v~iw~~~~~~~  637 (660)
                      ||.|+|||..+.+.
T Consensus       393 ~g~i~i~D~~T~k~  406 (432)
T d1qksa2         393 ESALVVVDDKTLEL  406 (432)
T ss_dssp             CCEEEEEETTTTEE
T ss_pred             CCcEEEEECCCceE
Confidence            68999999999987

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=2.4e-21  Score=203.58  Aligned_cols=306  Identities=12%  Similarity=0.070  Sum_probs=203.8

Q ss_pred             eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEeccCCc
Q 006126          266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNK  344 (660)
Q Consensus       266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~~~~  344 (660)
                      ..+.|||||+++++++.|+++++||+.+.+.. ....+. ...+|.+.+.+++|+|||+++++++ .++.+.+||.....
T Consensus        65 ~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~-~~~~i~-~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~  142 (426)
T d1hzua2          65 HISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  142 (426)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEccCCcee-EEEEEe-CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc
Confidence            34599999999999999999999999853211 111111 1123666778888899999876554 68999999988876


Q ss_pred             eeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEE-EEcCCCCCeE
Q 006126          345 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLA-TFANPPPIAT  419 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~-~~~~~~~~v~  419 (660)
                      ....          +...........+  .+......+.++  +..++...  .+.+.+++..++.... ....+...+.
T Consensus       143 ~~~~----------~~~~~~~~~~~~~--~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  210 (426)
T d1hzua2         143 PKQI----------VSTRGMTVDTQTY--HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA  210 (426)
T ss_dssp             EEEE----------EECCEECSSSCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred             eeEE----------eeccCCCccceee--cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence            5221          1111110000000  244555666666  56665555  4677777776654322 3336677889


Q ss_pred             EEEEcCCC-eEEE-EeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEEeCCCCE-E--EEEeCCCcEEEEEcCCCeee-
Q 006126          420 YFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNV-L--VSSGADAQLCVWDAVGWKKL-  491 (660)
Q Consensus       420 ~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~-l--~s~s~dg~i~vwd~~~~~~~-  491 (660)
                      .+.|+|++ ++++ ...+..+.+++..+++.+.....  +........+.+.+.. .  +..+.|+.+.+|+....... 
T Consensus       211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~  290 (426)
T d1hzua2         211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ  290 (426)
T ss_dssp             EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred             eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence            99999999 5554 45667899999999988776643  2222333444433332 2  23345788888887653210 


Q ss_pred             -eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--------ecCcEEEEeCCCCceeeeecC-------CCCCCCeEE
Q 006126          492 -CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--------HEGQIDVYEAPTLNHTSQLVP-------DKMDLPITY  555 (660)
Q Consensus       492 -~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--------~d~~i~iwd~~~~~~~~~~~~-------~~~~~~v~~  555 (660)
                       ...... ...+|.   ..+..++|+||+++|++.        .+++|+|||+++++...++..       ..+...|.+
T Consensus       291 ~~~~~~~-~l~g~~---~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~  366 (426)
T d1hzua2         291 YAWKKVA-ELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ  366 (426)
T ss_dssp             TBTSEEE-EEECSS---SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred             ccceEeE-EEecCC---CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence             012222 456777   689999999999999952        468999999999887766532       235677999


Q ss_pred             EEEccCCCEEEEE-----ecCCeEEEEECCCCeeEEEee
Q 006126          556 ATYSCDGKCIYVS-----CKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       556 ~~~s~dg~~l~sg-----~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      ++|||||++++.+     +.+|.|+|||..++++...+.
T Consensus       367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             EEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             EEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence            9999999987543     357899999999999888876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.7e-21  Score=196.68  Aligned_cols=278  Identities=12%  Similarity=0.071  Sum_probs=196.6

Q ss_pred             CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccc
Q 006126          275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVN  353 (660)
Q Consensus       275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~  353 (660)
                      +++++++.|++|++||+++   ......+.++.  +...+.+++|+|||++++ +++.++.|.+||+.+++....     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s---~~~~~~i~~~~--~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~-----   71 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK---MAVDKVITIAD--AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR-----   71 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT---TEEEEEEECTT--CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE-----
T ss_pred             eEEEEEcCCCEEEEEECCC---CeEEEEEECCC--CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE-----
Confidence            4799999999999999985   23333343433  566788999999999875 556789999999988765222     


Q ss_pred             eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-------------CCcEEEEECCCCeEEEEEcCCCCCe
Q 006126          354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANPPPIA  418 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-------------dg~I~iwd~~~~~~~~~~~~~~~~v  418 (660)
                           .......        .+...+..++|+  +++++++.             ++.+.+||..+++....+..+ ..+
T Consensus        72 -----~~~~~~~--------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~  137 (337)
T d1pbyb_          72 -----IDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQI  137 (337)
T ss_dssp             -----EECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSC
T ss_pred             -----EecCCCc--------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCc
Confidence                 1111100        011223456777  66665553             467899999999998888654 457


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC------------------------EEEE
Q 006126          419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN------------------------VLVS  473 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~------------------------~l~s  473 (660)
                      .+++|+|+| .+++++.+  +.+||..+++....+..+... ....+.|++.                        ....
T Consensus       138 ~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T d1pbyb_         138 TMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             CCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             eEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeee
Confidence            789999999 88887654  678999999887776543211 1111222221                        1111


Q ss_pred             EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCe
Q 006126          474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPI  553 (660)
Q Consensus       474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  553 (660)
                      ++.++.+.+||..++.....     ....+.   ..+..+.++|++.++++. ++.|++||+.+++.+..+..   ...+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~---~~~~  282 (337)
T d1pbyb_         215 TAYRTGLLTMDLETGEMAMR-----EVRIMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHSY  282 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEE-----EEEECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSCC
T ss_pred             cccCccEEEEEcCCCcEEEE-----EecCCC---cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC---CCCE
Confidence            22344688899888643211     122333   567889999999988654 68899999999999888853   5678


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecc
Q 006126          554 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT  591 (660)
Q Consensus       554 ~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~  591 (660)
                      .+++|+|||++|++++.|+.|+|||..+++.+..+..+
T Consensus       283 ~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             CEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            89999999999999999999999999999999988754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=8.1e-23  Score=208.69  Aligned_cols=272  Identities=11%  Similarity=-0.027  Sum_probs=198.2

Q ss_pred             EEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE
Q 006126          316 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA  392 (660)
Q Consensus       316 ~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~  392 (660)
                      .-.||| ||+++|+++ +|.|.+|+...+.                     .++.    +|...|.+++|+  |++|+++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~---------------------~~~~----~~~~~v~~~~~spDg~~l~~~   60 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---------------------VLKV----PEPLRIRYVRRGGDTKVAFIH   60 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSB---------------------EEEC----SCCSCEEEEEECSSSEEEEEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCc---------------------EEEc----cCCCCEEEEEECCCCCEEEEE
Confidence            457999 999998876 4788888765543                     3321    588999999999  7788877


Q ss_pred             e-C--CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC
Q 006126          393 S-G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL  468 (660)
Q Consensus       393 ~-d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~  468 (660)
                      + +  ..|++||..+++.. .+..|...+.+++|+|+| +|++++.++.+++|++.+++....+..|...+.+++|+|+|
T Consensus        61 ~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  139 (360)
T d1k32a3          61 GTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS  139 (360)
T ss_dssp             EETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred             EcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccce
Confidence            6 4  37999999887654 567899999999999999 99999999999999999999999999999999999999999


Q ss_pred             CEEEEEe----------CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 006126          469 NVLVSSG----------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT  537 (660)
Q Consensus       469 ~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~  537 (660)
                      ++|+.+.          .++.+++||+.+++..     . .. .+.   ..+..++|+|||++|++ +.++.+.+||...
T Consensus       140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-----~-~~-~~~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-----A-AT-TEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-----E-CS-CSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             eeeeeeccccccceeeccccceeeeccccCcee-----e-ec-ccc---cccccccccCCCCEEEEEeCCCceEcccccc
Confidence            9998654          3456999999985432     1 12 222   46888999999999998 6889999999765


Q ss_pred             Ccee-------eeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126          538 LNHT-------SQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTISLELYP  605 (660)
Q Consensus       538 ~~~~-------~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~  605 (660)
                      ....       ..+.  .+...+..+.|++++..++++..+.     .+..++...+.......        + ...+. 
T Consensus       210 ~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~-  277 (360)
T d1k32a3         210 LNFSFEVVSKPFVIP--LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP--------L-ESSIL-  277 (360)
T ss_dssp             SCEECCSCBEEEEEE--SSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE--------C-SSEEE-
T ss_pred             cceeeccccceEEEe--cccCccccceECCCcCcccccceeecccccceeecccCcCceeEeee--------c-CCCce-
Confidence            4432       1111  1244445566778877776655432     24445555555433221        1 11122 


Q ss_pred             EEEEEecC--CCCEEEEEeCCCeEEEEeCCCCce
Q 006126          606 LVIAAHPL--EPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       606 ~~v~~sp~--d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                       .+.+.+.  ++.++++++.++.|++||+.+++.
T Consensus       278 -~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  310 (360)
T d1k32a3         278 -IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV  310 (360)
T ss_dssp             -EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred             -EEEEEecCCCeeEEEecCCCCEEEEEECCCCeE
Confidence             3444331  334688899999999999988764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=5.5e-22  Score=201.06  Aligned_cols=285  Identities=11%  Similarity=0.002  Sum_probs=199.2

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcce-eeeecCCCCCCCCeEEEEEecCCCEEEE-EECCCcEEEEeccCCcee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQS  346 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~~spdg~~l~s-~s~dg~i~vw~~~~~~~~  346 (660)
                      +|+++++++++++.|++|.+||+.+    .++ ..+.++   |...+.+++|+|||+++++ ++.++.|.+||+.+++..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t----~~~~~t~~~~---~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVAS----DTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTT----TEEEEEEECS---SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCC----CCEEEEEEcC---CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            6899999999999999999999985    443 334443   4667899999999998755 456899999999887652


Q ss_pred             eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-------------CCcEEEEECCCCeEEEEE
Q 006126          347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATF  411 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-------------dg~I~iwd~~~~~~~~~~  411 (660)
                      ..          ........       .+...+..++|+  |+++++++             ++.+.+|+..+++....+
T Consensus        76 ~~----------~~~~~~~~-------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  138 (346)
T d1jmxb_          76 FH----------ANLSSVPG-------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  138 (346)
T ss_dssp             EE----------EESCCSTT-------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             ee----------eccccccc-------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence            21          11100000       111224456777  66665543             567889998887655433


Q ss_pred             c--CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE-------------------
Q 006126          412 A--NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------------------  470 (660)
Q Consensus       412 ~--~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-------------------  470 (660)
                      .  .....+..+.+++++.+++.  ++.+.+|++.+++.+..+..+. ....+.++|++..                   
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (346)
T d1jmxb_         139 RTFPMPRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  215 (346)
T ss_dssp             EEEECCSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             EeeeccCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeee
Confidence            3  22344556677777733333  2458999999998888776432 2333344454433                   


Q ss_pred             -------EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeee
Q 006126          471 -------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       471 -------l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~  543 (660)
                             ++++..++.+.+||+.++....     ....++.   ..+..+.+++++.+++...++.|.+||..+++.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~  287 (346)
T d1jmxb_         216 FKDDKQDPATADLLYGYLSVDLKTGKTHT-----QEFADLT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKA  287 (346)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEE-----EEEEECS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEE
T ss_pred             eccCceeEeeccCCceEEEEECCCCceEE-----EEeeccc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEE
Confidence                   2233345567778887754221     1233444   578889999999998887778899999999998888


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecc
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT  591 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~  591 (660)
                      +..   ...+.+++|+|||++|++++.||.|+|||+.+++.+..+..+
T Consensus       288 ~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         288 ANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            754   456889999999999999999999999999999999988754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=9.4e-22  Score=206.71  Aligned_cols=304  Identities=12%  Similarity=0.051  Sum_probs=187.8

Q ss_pred             ceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEE-EEEECCCcEEEEeccCC
Q 006126          265 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSN  343 (660)
Q Consensus       265 ~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~  343 (660)
                      ...+.|||||+++++++.||++++||+.+.... ....+.. +.+|.+.+.+.+|+|||++| ++++.++.+++||..++
T Consensus        64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~-~~~~i~~-~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce-EEEEEec-CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence            344599999999999999999999999753211 1122111 12255667777888999986 67777999999999887


Q ss_pred             ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-e-CCcEEEEECCCCeEEEEEc-CCCCCe
Q 006126          344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFA-NPPPIA  418 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-~-dg~I~iwd~~~~~~~~~~~-~~~~~v  418 (660)
                      +....          ............+  .+......+.++  +..++.+ . ++.|.+||..+++...... .+....
T Consensus       142 ~~~~~----------~~~~~~~~~~~~~--~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~  209 (432)
T d1qksa2         142 EPKKI----------QSTRGMTYDEQEY--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL  209 (432)
T ss_dssp             CEEEE----------EECCEECTTTCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred             cceee----------eccCCccccceec--cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCcc
Confidence            65222          1111000000000  356667788888  6665544 4 6999999999887655433 445678


Q ss_pred             EEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeEeec-----cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCee
Q 006126          419 TYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK  490 (660)
Q Consensus       419 ~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~  490 (660)
                      ..++|+|+| ++++++ .++.+.++|..+++.+..+..     |........+...+....+.. .++.+.+|+......
T Consensus       210 ~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~  289 (432)
T d1qksa2         210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH  289 (432)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             ccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc
Confidence            899999999 665555 556899999988877655432     333334444443444443333 366777777654211


Q ss_pred             ee--ceeeeeeeeccC---------C-------------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeec
Q 006126          491 LC--SKFLHSFQTGLV---------P-------------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV  545 (660)
Q Consensus       491 ~~--~~~~~~~~~~~~---------~-------------~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~  545 (660)
                      ..  ..... ....+.         +             ......++++ ||++.+++ +.|+.+++||+.++..   +.
T Consensus       290 ~~~~~~v~~-~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~  364 (432)
T d1qksa2         290 PDNAWKILD-SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---IT  364 (432)
T ss_dssp             TTTBTSEEE-EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CC
T ss_pred             cccccEEEE-EEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccc---cC
Confidence            00  00000 000000         0             0001112333 66666666 4667777777644322   21


Q ss_pred             CCCCCCCeEEEEEccCCCEEEEEe-----cCCeEEEEECCCCeeEEEee
Q 006126          546 PDKMDLPITYATYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~dg~~l~sg~-----~dg~I~iwd~~~~~~~~~~~  589 (660)
                        .|...+.+++|||||++++.+.     .+|.|.|||..++++...+.
T Consensus       365 --~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~  411 (432)
T d1qksa2         365 --EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  411 (432)
T ss_dssp             --SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             --CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEec
Confidence              2467799999999999887664     36899999999999988776

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.9e-20  Score=187.39  Aligned_cols=278  Identities=14%  Similarity=0.075  Sum_probs=196.8

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE-EEe-CCcEEE
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISI  399 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~-s~~-dg~I~i  399 (660)
                      +|+++++.|++|.|||+++.+.                     +..+....+...+.+++|+  |++++ +++ ++.|.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~---------------------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v   60 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV---------------------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE---------------------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeE---------------------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEE
Confidence            4899999999999998877654                     2211111344567789999  77775 455 899999


Q ss_pred             EECCCCeEEEEEcCCCC-----CeEEEEEcCCC-eEEEEe------------CCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126          400 FSLETFQTLATFANPPP-----IATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRITC  461 (660)
Q Consensus       400 wd~~~~~~~~~~~~~~~-----~v~~v~~sp~~-~l~s~~------------~d~~I~iwd~~~~~~~~~~~~~~~~v~~  461 (660)
                      ||+.+++.+..+..+..     .+..++|+|++ .++++.            .+..+.+||..+++....+.. ...+.+
T Consensus        61 ~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~  139 (337)
T d1pbyb_          61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITM  139 (337)
T ss_dssp             EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCC
T ss_pred             EECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceE
Confidence            99999999988875543     33578999999 776665            467899999999998888874 456888


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC--CC---------CCC---eEEEEEecCCcEEEE-Ee
Q 006126          462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PE---------TTI---VNHIQFHPDQIHLLS-IH  526 (660)
Q Consensus       462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~---------~~~---v~~~~~sp~~~~l~~-~~  526 (660)
                      +.|+|+|+++++++.  .+.+||..+++...............  +.         ...   ........+...... +.
T Consensus       140 ~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T d1pbyb_         140 LAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             EEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             EEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence            999999999998864  47789999876544332221000000  00         000   000111111111111 23


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                      ++.+.+||..++........ .+...+..+.++|++.+++.+  ++.|++||+.+++.+..+..         ...+.  
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~---------~~~~~--  283 (337)
T d1pbyb_         218 RTGLLTMDLETGEMAMREVR-IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------PHSYY--  283 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCC--
T ss_pred             CccEEEEEcCCCcEEEEEec-CCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC---------CCCEE--
Confidence            45699999998886554332 357788889999999998876  58999999999999988763         23344  


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126          607 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      +++|+| ||++|++++.||+|+|||..+++..-.
T Consensus       284 ~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         284 SVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             EEEECT-TSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             EEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            899999 899999999999999999999887443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.7e-20  Score=189.98  Aligned_cols=279  Identities=11%  Similarity=-0.002  Sum_probs=198.1

Q ss_pred             EEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-
Q 006126          317 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-  393 (660)
Q Consensus       317 ~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-  393 (660)
                      ++|+++++||++++.|++|.+||+.+++.                     +..... .|...+.+++|+  |+++++++ 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~---------------------~~t~~~-~~~~~p~~l~~spDG~~l~v~~~   59 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------YKSCVM-PDKFGPGTAMMAPDNRTAYVLNN   59 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-SSCCSSCEEEECTTSSEEEEEET
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE---------------------EEEEEc-CCCCCcceEEECCCCCEEEEEEC
Confidence            47899999999999999999998877654                     221111 355667899999  77765544 


Q ss_pred             -CCcEEEEECCCCeEEEEEcCCCC------CeEEEEEcCCC-eEEEEe------------CCCeEEEEeCCCCceeeEee
Q 006126          394 -GGKISIFSLETFQTLATFANPPP------IATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLK  453 (660)
Q Consensus       394 -dg~I~iwd~~~~~~~~~~~~~~~------~v~~v~~sp~~-~l~s~~------------~d~~I~iwd~~~~~~~~~~~  453 (660)
                       ++.|.+||+.+++.+..+.....      .+..++|+||| .+++++            .++.+.+||..+++....+.
T Consensus        60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence             79999999999999887764322      34578999999 666554            46789999998887665443


Q ss_pred             c--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--------------
Q 006126          454 G--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--------------  517 (660)
Q Consensus       454 ~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------------  517 (660)
                      .  ....+..+.+++++..+++   ++.+.+||+.+++........          .....+.++|              
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  206 (346)
T d1jmxb_         140 TFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLR----------NWNRKGYSAPDVLYFWPHQSPRHE  206 (346)
T ss_dssp             EEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECST----------TCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred             eeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecC----------CCccceEEeccccEEEEEecCCCc
Confidence            3  2345666777778776654   356889999886544322211          0111122222              


Q ss_pred             ------------CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126          518 ------------DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL  584 (660)
Q Consensus       518 ------------~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~  584 (660)
                                  ....+.+ ..+..+.+||..++........ .+...+..+.+++++.+++.+.. +.|++||..+++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~  284 (346)
T d1jmxb_         207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-DLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKL  284 (346)
T ss_dssp             EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEE
T ss_pred             eEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEee-cccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcE
Confidence                        2222233 3566799999988876655433 25778899999999988887654 5799999999998


Q ss_pred             EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126          585 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       585 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~  644 (660)
                      +..+..         .+.++  +++|+| ||+++++++.||.|+|||+.+++.......|
T Consensus       285 ~~~~~~---------~~~~~--~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         285 IKAANL---------DHTYY--CVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EEEEEC---------SSCCC--EEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEcC---------CCCEE--EEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            887753         23345  899999 8999999999999999999999986655444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.7e-17  Score=166.74  Aligned_cols=285  Identities=12%  Similarity=0.121  Sum_probs=188.1

Q ss_pred             EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCceeeeeeccce
Q 006126          276 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM  354 (660)
Q Consensus       276 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~  354 (660)
                      .+++++.|++|++|++..   .+.+..+....  |.+.|..++|||||++|++++. |+.|.+|++........      
T Consensus         6 v~v~~~~~~~I~v~~~~~---~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~------   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNH---EGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECT---TSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred             EEEECCCCCcEEEEEEcC---CCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE------
Confidence            346777999999999975   23222222111  7889999999999999966665 89999999876543111      


Q ss_pred             eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC-
Q 006126          355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-  427 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~-  427 (660)
                                 .....   .+...+..++|+  |++|++++  ++.|.+|+..........  ..+...+.++.++|++ 
T Consensus        75 -----------~~~~~---~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~  140 (333)
T d1ri6a_          75 -----------FAAES---ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR  140 (333)
T ss_dssp             -----------EEEEE---ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS
T ss_pred             -----------Eeeec---ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecce
Confidence                       11000   244456679999  88888887  578999998776654443  3566778889999999 


Q ss_pred             eEEEEe-CCCeEEEEeCCCCceeeE------eeccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeee--eceeee
Q 006126          428 LFAFGF-DDSSILVHCPCTKKTKAK------LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKL--CSKFLH  497 (660)
Q Consensus       428 ~l~s~~-~d~~I~iwd~~~~~~~~~------~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~--~~~~~~  497 (660)
                      .+++++ .+..|.+|+.........      ..........++|++++..++... ..+...+|+.......  ....+.
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  220 (333)
T d1ri6a_         141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD  220 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred             eeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee
Confidence            665555 556899999876543221      122445678899999998877655 4567788886543211  111111


Q ss_pred             eeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEec-CCe
Q 006126          498 SFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK-SGH  573 (660)
Q Consensus       498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~-dg~  573 (660)
                      ....... .......++++++++++++ + .++.+.+|++........... ......+.+++|+|||++|++++. ++.
T Consensus       221 ~~~~~~~-~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~  299 (333)
T d1ri6a_         221 MMPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH  299 (333)
T ss_dssp             CSCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCE
T ss_pred             eeecCCC-ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCe
Confidence            1111111 0135677899999998887 4 667899998875543322221 112456778999999999887654 588


Q ss_pred             EEEE--ECCCCeeEE
Q 006126          574 VKVF--DTSTLELRC  586 (660)
Q Consensus       574 I~iw--d~~~~~~~~  586 (660)
                      |++|  |..+|++..
T Consensus       300 v~v~~id~~tG~l~~  314 (333)
T d1ri6a_         300 ISVYEIVGEQGLLHE  314 (333)
T ss_dssp             EEEEEEETTTTEEEE
T ss_pred             EEEEEEECCCCcEEE
Confidence            9998  556776543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=4.7e-17  Score=166.72  Aligned_cols=289  Identities=13%  Similarity=0.045  Sum_probs=194.9

Q ss_pred             CCCCeEEEEEecCCCEEEEEEC-----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      +..++.+++++|||+.++....     .+.+.+||.                     .+++.+....  .+.  ...++|
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~---------------------~tg~~~~~~~--~~~--~~~~a~   73 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDA---------------------GSGSILGHVN--GGF--LPNPVA   73 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEEC---------------------CCCCEEEEEe--CCC--CccEEE
Confidence            7889999999999998876532     234555554                     4444443321  222  236788


Q ss_pred             e--CCEEEEEe-----------CCcEEEEECCCCeEEEEEcCCCCCe-------EEEEEcCCC-eEEE--EeCCCeEEEE
Q 006126          385 R--GSHLFSAS-----------GGKISIFSLETFQTLATFANPPPIA-------TYFILLPQD-LFAF--GFDDSSILVH  441 (660)
Q Consensus       385 s--~~~l~s~~-----------dg~I~iwd~~~~~~~~~~~~~~~~v-------~~v~~sp~~-~l~s--~~~d~~I~iw  441 (660)
                      +  |++|++++           ++.|.+||..+++.+..+..+....       ..+.|++++ .++.  ...++.+.+|
T Consensus        74 SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~  153 (373)
T d2madh_          74 AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence            8  88887764           4679999999999988887655443       456788888 4433  3456688899


Q ss_pred             eCCCCceeeEeeccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          442 CPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      +..+.+.....    ....++.++|+|+.+ ++.+.|+.+.+||...+.............+..   .....+.+++++.
T Consensus       154 ~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  226 (373)
T d2madh_         154 VQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQN---LLTQPAQANKSGR  226 (373)
T ss_pred             eccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCcc---ceeeeEEECCCce
Confidence            88876654433    346788899998764 678899999999998865443322221111222   2344566777777


Q ss_pred             EEEEEecCcEEEEeCCCCceeeeecCCCC----------CCCeEEEEEccCCCEEE----------EEecCCeEEEEECC
Q 006126          521 HLLSIHEGQIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIY----------VSCKSGHVKVFDTS  580 (660)
Q Consensus       521 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~dg~~l~----------sg~~dg~I~iwd~~  580 (660)
                      +++.+.++.+.+|+..+...........+          ......+++++++..++          +...++.+.+||..
T Consensus       227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  306 (373)
T d2madh_         227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC
Confidence            77778889999999877654322211111          12334456666666544          45556789999999


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE--EEEEeCCCeEEEEeCCCCceeccCC
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR--IALGLTNGRVHVIEPLESEVEWGKL  642 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~--l~s~s~Dg~v~iw~~~~~~~~w~~~  642 (660)
                      +++.+..+..         .....  .++|+| ||+.  +++++.|++|+|||+.+++......
T Consensus       307 t~~~~~~~~~---------~~~~~--~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         307 VGQTSSQISL---------GHDVD--AISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CCcEEEEecC---------CCCee--EEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            9998887753         22334  899999 8884  5788999999999999998755443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=9.5e-16  Score=156.78  Aligned_cols=287  Identities=9%  Similarity=-0.031  Sum_probs=187.4

Q ss_pred             EecCCCCEEEEEe-----CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CC
Q 006126          269 TSLPDADSAVCAK-----SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TA  333 (660)
Q Consensus       269 ~~spdg~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg  333 (660)
                      .++|||+.++...     .++.+.+||..+    ++.... ++.  +.  ...++|||||++|++++.          ++
T Consensus        27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~t----g~~~~~-~~~--~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~   97 (373)
T d2madh_          27 APGADGRRSYINLPAHHSAIIQQWVLDAGS----GSILGH-VNG--GF--LPNPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             ccCCCCCEEEEEcccccCCCceEEEEECCC----CCEEEE-EeC--CC--CccEEEcCCCCEEEEEeecCCcccccccce
Confidence            7899999987653     346789999874    444432 322  22  337999999999998764          45


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTL  408 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~  408 (660)
                      .|.+||..+++....          ..........      -......+.|+  ++.++...   ++.+.+|+..+.+..
T Consensus        98 ~v~v~D~~t~~~~~~----------~~~~~~~~~~------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  161 (373)
T d2madh_          98 YVEVFDPVTFLPIAD----------IELPDAPRFD------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD  161 (373)
T ss_pred             EEEEEECCCCcEEEE----------EecCCcceeE------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE
Confidence            677777666554111          0000000000      00112345666  55544443   568889998887765


Q ss_pred             EEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccC------CCeEEEEEeCCCCEEEEEeCCCcE
Q 006126          409 ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------NRITCLAYSLSLNVLVSSGADAQL  480 (660)
Q Consensus       409 ~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~------~~v~~l~~sp~~~~l~s~s~dg~i  480 (660)
                      ....    ...++.++|++  .+++.+.|+.+.+|+...+........+.      .....+.+++++ .++..+.++.+
T Consensus       162 ~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v  236 (373)
T d2madh_         162 QLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKI  236 (373)
T ss_pred             EEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceE
Confidence            5443    34578899999  67889999999999999887766554321      223344556555 44556778999


Q ss_pred             EEEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEE-----------EecCcEEEEeCCCCceeeee
Q 006126          481 CVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLS-----------IHEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       481 ~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~-----------~~d~~i~iwd~~~~~~~~~~  544 (660)
                      .+|+..++..........     ......+  .....+++++++..++.           ..++.+.+||..+++.+..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         237 LQADISAAGATNKAPIDALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             EEEEcCCCeEEEEEeeccccCcEEeeeecc--CcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence            999988764322111110     0000011  23445677777766543           24567999999999998887


Q ss_pred             cCCCCCCCeEEEEEccCCCE--EEEEecCCeEEEEECCCCeeEEEeec
Q 006126          545 VPDKMDLPITYATYSCDGKC--IYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       545 ~~~~~~~~v~~~~~s~dg~~--l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      .   +...+..++|+|||+.  +++++.|+.|++||+.+++.+..+..
T Consensus       315 ~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         315 S---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             c---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC
Confidence            4   3677899999999984  46788999999999999999998874

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=5.4e-17  Score=164.82  Aligned_cols=287  Identities=14%  Similarity=0.091  Sum_probs=185.2

Q ss_pred             EecCCCCEEEEEe-----CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCC
Q 006126          269 TSLPDADSAVCAK-----SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTA  333 (660)
Q Consensus       269 ~~spdg~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s----------~dg  333 (660)
                      ..+|||+.++...     .++++.+||..+    ++.... ++    .+.+..++|||||++|++.+          .|+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~t----g~~~~~-~~----~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGM-ID----GGFLPNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT----TEEEEE-EE----ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCC----CcEEEE-EE----CCCCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            5689999987764     346799999984    443332 32    23344799999999887654          367


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTL  408 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~  408 (660)
                      .|.+||..+++....         +... .....      ........++|+  +++++.++   +..+.+|+..+++.+
T Consensus        79 ~v~v~D~~t~~~~~~---------~~~~-~~~~~------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          79 YVEVFDPVTLLPTAD---------IELP-DAPRF------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             EEEEECTTTCCEEEE---------EEET-TCCCC------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             EEEEEECCCCCEEEE---------EecC-Cccee------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence            888888877654211         0000 00000      112233457888  77777665   468999999999988


Q ss_pred             EEEcCCCCC-------eEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126          409 ATFANPPPI-------ATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ  479 (660)
Q Consensus       409 ~~~~~~~~~-------v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  479 (660)
                      ..+..+...       ...+.+++|+ .+ +....++.+.+++......     .+...+....+.+++..++.++.++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d2bbkh_         143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGK  217 (355)
T ss_dssp             EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSE
T ss_pred             eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCe
Confidence            887654321       1234455555 22 2233333444444333221     23344556678888899999999999


Q ss_pred             EEEEEcCCCeeeeceeee--e---eeeccCCCCCCeEEEEEecCCcEEEE-Eec----------CcEEEEeCCCCceeee
Q 006126          480 LCVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHLLS-IHE----------GQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       480 i~vwd~~~~~~~~~~~~~--~---~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d----------~~i~iwd~~~~~~~~~  543 (660)
                      +++|++..+.........  .   ......+  .....+++++++..++. ..+          +.|.+||..+++.+..
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~  295 (355)
T d2bbkh_         218 IHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  295 (355)
T ss_dssp             EEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             EEEEecCCCcEEEEeccCCcccceEeeeeec--cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEE
Confidence            999999886532111110  0   0000000  23345889999999887 332          3699999999999888


Q ss_pred             ecCCCCCCCeEEEEEccCCC--EEEEEecCCeEEEEECCCCeeEEEeec
Q 006126          544 LVPDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~--~l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                      +..   ...+.+++|+|||+  ++++++.|+.|++||+.+++.+..+..
T Consensus       296 ~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         296 FEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             ecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            754   45688999999998  456677799999999999999988863

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.5e-16  Score=158.06  Aligned_cols=279  Identities=12%  Similarity=0.070  Sum_probs=183.3

Q ss_pred             EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEE
Q 006126          326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFS  401 (660)
Q Consensus       326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd  401 (660)
                      +++++.|++|++|++......                  ..++..   .|.+.+..++|+  |++|++++  |+.|.+|+
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l------------------~~~~~~---~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~   65 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGAL------------------TLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR   65 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCE------------------EEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCe------------------EEEEEE---cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            467778999999998654320                  111111   477889999999  88886665  79999999


Q ss_pred             CCCCeEEEEE---cCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeE--eeccCCCeEEEEEeCCCCEEEEE
Q 006126          402 LETFQTLATF---ANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSS  474 (660)
Q Consensus       402 ~~~~~~~~~~---~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~  474 (660)
                      +.......++   ..+...+..++|+||| ++++++ .++.|.+|+.........  ...+...+.++.++|++++++++
T Consensus        66 i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~  145 (333)
T d1ri6a_          66 IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP  145 (333)
T ss_dssp             ECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE
T ss_pred             EeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecc
Confidence            9765433222   2344456789999999 777776 467899998776654433  34466778899999999998887


Q ss_pred             eC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCce----eeeecC-
Q 006126          475 GA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH----TSQLVP-  546 (660)
Q Consensus       475 s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~----~~~~~~-  546 (660)
                      +. +..|.+|+....................   .....++|++++.+++..  ..+...+|+......    ...... 
T Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g---~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         146 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEG---AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEEECSTT---CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             ccccceeeEEEeccCCcceeeeceeeeeecC---CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence            75 4579999987754322222111111222   457889999999998874  556778887653221    111111 


Q ss_pred             ---CCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126          547 ---DKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       547 ---~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s  622 (660)
                         .........+++++|+++++... .++.+.+|++........+....  ..   ..  .+.+++|+| ||++|++++
T Consensus       223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~--~p~~~a~sp-DGk~l~va~  294 (333)
T d1ri6a_         223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ--PT---ET--QPRGFNVDH-SGKYLIAAG  294 (333)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE--EC---SS--SCCCEEECT-TSSEEEEEC
T ss_pred             ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe--CC---CC--CeeEEEEeC-CCCEEEEEE
Confidence               11245667889999999777654 56889999987654333322110  00   11  233799999 899877665


Q ss_pred             -CCCeEEEEeC--CCCc
Q 006126          623 -TNGRVHVIEP--LESE  636 (660)
Q Consensus       623 -~Dg~v~iw~~--~~~~  636 (660)
                       .+++|+||++  .+|+
T Consensus       295 ~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         295 QKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             TTTCEEEEEEEETTTTE
T ss_pred             CCCCeEEEEEEECCCCc
Confidence             5689999955  4554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1.4e-15  Score=154.14  Aligned_cols=274  Identities=12%  Similarity=0.020  Sum_probs=178.2

Q ss_pred             EEEecCCCEEEEEEC-----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          317 LIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       317 ~~~spdg~~l~s~s~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      .+.+|||+.++....     ++.+.+||..+++                     ++....  .+  ....++|+  |++|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~---------------------~~~~~~--~g--~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------VIGMID--GG--FLPNPVVADDGSFI   61 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------EEEEEE--EC--SSCEEEECTTSSCE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCc---------------------EEEEEE--CC--CCCceEEcCCCCEE
Confidence            356899998876643     3457666655544                     333221  12  23368888  7766


Q ss_pred             EEE----------e-CCcEEEEECCCCeEEEEEcCCCC-------CeEEEEEcCCC-eEEEE--eCCCeEEEEeCCCCce
Q 006126          390 FSA----------S-GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFG--FDDSSILVHCPCTKKT  448 (660)
Q Consensus       390 ~s~----------~-dg~I~iwd~~~~~~~~~~~~~~~-------~v~~v~~sp~~-~l~s~--~~d~~I~iwd~~~~~~  448 (660)
                      +++          . ++.|++||..+++.+..+..+..       ....++|+|++ .++++  +.+..+.+|+..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            543          3 67899999999999887753322       23467999999 66555  4567899999999988


Q ss_pred             eeEeeccCC-------CeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126          449 KAKLKGHQN-------RITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI  520 (660)
Q Consensus       449 ~~~~~~~~~-------~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  520 (660)
                      +..+..+..       ....+.++++++.++... .++.+.+++.....           ..+.   ..+....+.+++.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~  207 (355)
T d2bbkh_         142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----------PEDE---FLINHPAYSQKAG  207 (355)
T ss_dssp             EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----------CTTS---CBCSCCEEETTTT
T ss_pred             eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----------ceec---ceeeeccccCCCC
Confidence            887765432       223345556655554432 23344444443311           1122   2345567777777


Q ss_pred             EEEE-EecCcEEEEeCCCCceeee--ecCCC--------CCCCeEEEEEccCCCEEEEEecC----------CeEEEEEC
Q 006126          521 HLLS-IHEGQIDVYEAPTLNHTSQ--LVPDK--------MDLPITYATYSCDGKCIYVSCKS----------GHVKVFDT  579 (660)
Q Consensus       521 ~l~~-~~d~~i~iwd~~~~~~~~~--~~~~~--------~~~~v~~~~~s~dg~~l~sg~~d----------g~I~iwd~  579 (660)
                      .++. +.++.+++|++..+.....  .....        .......+++++++..++....+          +.|.+||.
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            7777 5889999999987654221  11100        01223458899999988876554          36999999


Q ss_pred             CCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC--EEEEEeCCCeEEEEeCCCCceeccC
Q 006126          580 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN--RIALGLTNGRVHVIEPLESEVEWGK  641 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~--~l~s~s~Dg~v~iw~~~~~~~~w~~  641 (660)
                      .+++.+..+..         ...+.  +++|+| ||+  ++++++.|++|+|||+.+++.....
T Consensus       288 ~t~~~~~~~~~---------~~~~~--~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         288 KTGERLAKFEM---------GHEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             TTCCEEEEEEE---------EEEEC--EEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEecC---------CCCEE--EEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            99998887763         22234  899999 787  4567778999999999999875443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=1.6e-13  Score=145.01  Aligned_cols=339  Identities=9%  Similarity=0.061  Sum_probs=188.1

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE  348 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~  348 (660)
                      .|.+|++++..  .|+.+.+||..+++....+...++.  .|...|.++.|||||++|+.++..  .++|....      
T Consensus        23 ~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~i~~~~~SpDg~~i~~~~~~--~~~~r~s~------   90 (470)
T d2bgra1          23 RWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFD--EFGHSINDYSISPDGQFILLEYNY--VKQWRHSY------   90 (470)
T ss_dssp             EECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTT--TSSSCCCEEEECTTSSEEEEEEEE--EECSSSCE------
T ss_pred             EeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhh--hccCccceeEECCCCCEEEEEECC--cceeeecc------
Confidence            89999988764  5788999999863322111111222  267789999999999999988742  23343211      


Q ss_pred             eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCC------------
Q 006126          349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP------------  414 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~------------  414 (660)
                          .....+||..++......   .|...+..+.|+  |+++|...++.+.+|+..+++..+....+            
T Consensus        91 ----~~~~~l~d~~~~~~~~l~---~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~  163 (470)
T d2bgra1          91 ----TASYDIYDLNKRQLITEE---RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW  163 (470)
T ss_dssp             ----EEEEEEEETTTTEECCSS---CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred             ----CceEEEEECCCCcccccc---cCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccce
Confidence                122356676666654432   588889999999  99999988999999999988766544321            


Q ss_pred             ------CCCeEEEEEcCCC-eEEEEeCCCe-EEEE-----------------------------------eCCCCceeeE
Q 006126          415 ------PPIATYFILLPQD-LFAFGFDDSS-ILVH-----------------------------------CPCTKKTKAK  451 (660)
Q Consensus       415 ------~~~v~~v~~sp~~-~l~s~~~d~~-I~iw-----------------------------------d~~~~~~~~~  451 (660)
                            ......+.|+||| .|+....|.+ +..|                                   ++.++.....
T Consensus       164 ~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~  243 (470)
T d2bgra1         164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (470)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSC
T ss_pred             eeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeee
Confidence                  1223567899999 8877665432 3322                                   2222211110


Q ss_pred             e-----------eccCCCeEEEEEeCCCCEEEEEe-CCC-----cEEEEEcCCCeeeeceeeeeeeeccCC--CCCCeEE
Q 006126          452 L-----------KGHQNRITCLAYSLSLNVLVSSG-ADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNH  512 (660)
Q Consensus       452 ~-----------~~~~~~v~~l~~sp~~~~l~s~s-~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~  512 (660)
                      .           ......+..+.|.+++..++... ..+     .+..+|..++.................  ....-..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~  323 (470)
T d2bgra1         244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE  323 (470)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred             ccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCC
Confidence            0           01112345678888887655432 222     233445555443221111000000000  0001112


Q ss_pred             EEEecCCcE--EEEE-ecCc--EEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEE-EEecCC------eEEEEECC
Q 006126          513 IQFHPDQIH--LLSI-HEGQ--IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSG------HVKVFDTS  580 (660)
Q Consensus       513 ~~~sp~~~~--l~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-sg~~dg------~I~iwd~~  580 (660)
                      ..+.+++..  ++.+ .+|.  |++|+...+.. ..+..  +...|..+ ++++++.++ ++..++      .|+-.++.
T Consensus       324 ~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt~--g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~  399 (470)
T d2bgra1         324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITK--GTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLS  399 (470)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCSCC-EESCC--SSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred             ceeeecCCCcEEEEeccCcCceeEEEeccCCce-eeecc--CCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECC
Confidence            344554433  3334 5554  66667654444 34432  25567665 455566553 333222      24444556


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE-E--EeCCCeEEEEeCCCCce
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-L--GLTNGRVHVIEPLESEV  637 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s--~s~Dg~v~iw~~~~~~~  637 (660)
                      .+.....+...   ..+| ...++  .++||| ||++++ +  +...-.+.+|+..+++.
T Consensus       400 g~~~~~~lt~~---~~~~-~~~~~--s~~fSp-dgky~~~~~s~~~~P~~~l~~~~~g~~  452 (470)
T d2bgra1         400 DYTKVTCLSCE---LNPE-RCQYY--SVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDKG  452 (470)
T ss_dssp             CTTCEEESSTT---TSTT-TBCBE--EEEECT-TSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred             CCCceeEeccc---ccCC-CCCEE--EEEECC-CCCEEEEEecCCCCCeEEEEECCCCCE
Confidence            55544444321   1122 33455  899999 899877 3  33445689999998876

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=6.2e-14  Score=143.05  Aligned_cols=289  Identities=10%  Similarity=-0.031  Sum_probs=182.8

Q ss_pred             CCCCeEEEEEecCCCEEEE---EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126          310 FGGRVVRLIYSHSGDFLVA---LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-  385 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s---~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-  385 (660)
                      +.++...++..++++....   ...+|...+|                   ++|..++..+....  ++...  .++|+ 
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~-------------------~~d~~~~~~~~~~~--~~~~~--~~a~sp   74 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENW-------------------VSCAGCGVTLGHSL--GAFLS--LAVAGH   74 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEE-------------------EEETTTTEEEEEEE--ECTTC--EEEECT
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEE-------------------EEeCCCCcEEEEEe--CCCCC--cceECC
Confidence            4666677778888885322   3345666655                   44555555554332  23222  47788 


Q ss_pred             -CCEEEEEe-----------CCcEEEEECCCCeEEEEEcCCCC-------CeEEEEEcCCC-eEEEEe-CCCeEEEEeCC
Q 006126          386 -GSHLFSAS-----------GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFGF-DDSSILVHCPC  444 (660)
Q Consensus       386 -~~~l~s~~-----------dg~I~iwd~~~~~~~~~~~~~~~-------~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~  444 (660)
                       |+.|++.+           |+.|.+||..+++.+..+..+..       ....++|+||| +++++. .++.+.+||+.
T Consensus        75 Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_          75 SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred             CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence             77776643           46799999999999888753322       22468999999 776665 67899999999


Q ss_pred             CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       445 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      +++....+..+.....   +......++..+.||.+.+|++.................+.   ..+..+.+.+++..+..
T Consensus       155 ~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         155 GASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN---CSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             TTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC---BCSCCEEETTTTEEEEC
T ss_pred             CCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc---cceeecccccCcEEEEe
Confidence            9998888776543321   11234566677788888888876643221111111112222   34556777777765443


Q ss_pred             EecCcEEEEeCCCCceeeeecCCC----------CCCCeEEEEEccCCCEEEEEecC---------CeEEEEECCCCeeE
Q 006126          525 IHEGQIDVYEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELR  585 (660)
Q Consensus       525 ~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~s~dg~~l~sg~~d---------g~I~iwd~~~~~~~  585 (660)
                       .++.+++++...+..........          .......+++++++..++....+         ..|.+||..+++.+
T Consensus       229 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~  307 (368)
T d1mdah_         229 -VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             -BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             -cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence             44566677765544332211110          01123357889999887765433         35999999999988


Q ss_pred             EEeecccccCCCCcCcccceEEEEEecCCCC--EEEEEeCCCeEEEEeCCCCceecc
Q 006126          586 CQINLTAYAQPGTISLELYPLVIAAHPLEPN--RIALGLTNGRVHVIEPLESEVEWG  640 (660)
Q Consensus       586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~--~l~s~s~Dg~v~iw~~~~~~~~w~  640 (660)
                      ..+..         ...++  +++|+| ||+  .++++..|++|+|||..+++..-.
T Consensus       308 ~~~~~---------~~~~~--~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         308 GPISN---------GHDSD--AIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             ECCEE---------EEEEC--EEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             EEecC---------CCcee--EEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            77653         22334  899999 786  356777899999999999987543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=3.3e-13  Score=137.56  Aligned_cols=286  Identities=7%  Similarity=-0.081  Sum_probs=174.3

Q ss_pred             EecCCCCEEE---EEeCCCc--EEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CC
Q 006126          269 TSLPDADSAV---CAKSLEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TA  333 (660)
Q Consensus       269 ~~spdg~~l~---s~~~dg~--i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg  333 (660)
                      ..++|++...   .+..+|+  +.+||..+    ++.... +..  +..  ..++|+|||++|++.+.          |+
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~----~~~~~~-~~~--~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGC----GVTLGH-SLG--AFL--SLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTT----TEEEEE-EEE--CTT--CEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCC----CcEEEE-EeC--CCC--CcceECCCCCEEEEEcccCccccccccCC
Confidence            5577887532   2345566  44557663    444332 211  232  36899999999888653          55


Q ss_pred             cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEE
Q 006126          334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLA  409 (660)
Q Consensus       334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~  409 (660)
                      .|.+||..+.+....          .....+...      ........++|+  |++|+++.  ++.+.+||+.+++...
T Consensus        97 ~v~v~D~~t~~~~~~----------i~~p~~~~~------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          97 YVEVFDPVTFLPIAD----------IELPDAPRF------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             EEEEECTTTCCEEEE----------EEETTSCSC------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             eEEEEECCCCcEeee----------ecCCcccee------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence            677777666543111          000000000      011223357888  88887776  6999999999999998


Q ss_pred             EEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE------eeccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126          410 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK------LKGHQNRITCLAYSLSLNVLVSSGADAQLC  481 (660)
Q Consensus       410 ~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~------~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  481 (660)
                      .+..+....    +.|++  .++..+.||.+.+++.........      +..+...+....+.+++..+.+  .++.+.
T Consensus       161 ~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~  234 (368)
T d1mdah_         161 LTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSIL  234 (368)
T ss_dssp             EEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCE
T ss_pred             EeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEE
Confidence            887554332    22333  666677788888887665433221      2234445556677777765543  345666


Q ss_pred             EEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEEE-ec---------CcEEEEeCCCCceeeeecC
Q 006126          482 VWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-HE---------GQIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~  546 (660)
                      +++...+..........     ...+..+  .....++++|++..+++. .+         ..|.+||..+++.+.++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~  312 (368)
T d1mdah_         235 QGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN  312 (368)
T ss_dssp             EEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred             EEeecCCceEEEeecccccceeeeeeecC--CCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC
Confidence            66665543221111100     0000000  223458899999887763 22         2599999999998888754


Q ss_pred             CCCCCCeEEEEEccCCC-E-EEEEecCCeEEEEECCCCeeEEEeec
Q 006126          547 DKMDLPITYATYSCDGK-C-IYVSCKSGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       547 ~~~~~~v~~~~~s~dg~-~-l~sg~~dg~I~iwd~~~~~~~~~~~~  590 (660)
                         ...+.+++|+|||+ + ++++..|+.|++||..+++.+..+..
T Consensus       313 ---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         313 ---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence               45688999999997 3 45667789999999999999988764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=2.8e-13  Score=137.97  Aligned_cols=302  Identities=10%  Similarity=0.008  Sum_probs=185.3

Q ss_pred             EEEEeCCCcEEEEeccCcCCCcceeeeec--------------------------CCCCCCCCeEEEEEecCCCEEEEEE
Q 006126          277 AVCAKSLEKSVNLKLQLINEPSECRTLLL--------------------------PDNSFGGRVVRLIYSHSGDFLVALT  330 (660)
Q Consensus       277 l~s~~~dg~i~iwd~~~~~~~~~~~~~~l--------------------------~~~~h~~~V~~~~~spdg~~l~s~s  330 (660)
                      +++++.+|+|++|++..+   ..+..+..                          .+..|........++|||++|+...
T Consensus        14 f~Sgg~sG~V~V~dlpS~---r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSM---RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTT---EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCC---cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence            567778999999998742   22222111                          0111444566666789999997776


Q ss_pred             C-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC--EEEEEeCCcE--------
Q 006126          331 Q-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS--HLFSASGGKI--------  397 (660)
Q Consensus       331 ~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~--~l~s~~dg~I--------  397 (660)
                      . ++.|.++|+.+.+.                     .+.... .+...+..++|+  ++  +++..++..+        
T Consensus        91 ~~~~rVavIDl~t~k~---------------------~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          91 KANTRVARIRLDIMKT---------------------DKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             TTTTEEEEEETTTTEE---------------------EEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             CCCCEEEEEECCCCcE---------------------eeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            4 78898888776643                     111100 355678888888  55  4544444333        


Q ss_pred             ----------EEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-eEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126          398 ----------SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYS  465 (660)
Q Consensus       398 ----------~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~v~~l~~s  465 (660)
                                ..+|..+.+....+... .....++++|+| ++++.+.+. .+..++..+......+... ..-..+.+.
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~  226 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAV  226 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEe
Confidence                      55888888777766533 345688999999 776666543 4444444444333222111 111223467


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCcee--
Q 006126          466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHT--  541 (660)
Q Consensus       466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~--  541 (660)
                      |+|+++.. +.++.+.+++.....     .+.+++.+     .....+.++|||++++++  .+++|.+||+.+....  
T Consensus       227 ~dGk~~~v-~~~~v~vvd~~~~~~-----v~~~IPvg-----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~  295 (441)
T d1qnia2         227 KAGNFKTI-GDSKVPVVDGRGESE-----FTRYIPVP-----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE  295 (441)
T ss_dssp             HTTCCBCC-TTCCCCEEECSSSCS-----SEEEECCB-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT
T ss_pred             cCCCEEEe-CCCCcEEEEcccCCc-----eEEEEeCC-----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh
Confidence            88987765 446777777766532     23323444     245679999999999884  7899999998652210  


Q ss_pred             ------eeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC----------CeeEEEeecccccCCCCcCcccc
Q 006126          542 ------SQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       542 ------~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                            ..+... ...-.....+|+++|....+..-|..|..|++..          ...+..+..+  -..|| ...+.
T Consensus       296 ~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~--y~~GH-~~~~~  372 (441)
T d1qnia2         296 DKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ--YQPGH-NHASL  372 (441)
T ss_dssp             TSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS--SCEEE-EEETT
T ss_pred             ccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc--cCCCC-Ccccc
Confidence                  111110 0123345678999998888888999999999742          1234444332  12366 33333


Q ss_pred             eEEEEEecCCCCEEEEEe
Q 006126          605 PLVIAAHPLEPNRIALGL  622 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s  622 (660)
                        +.+++| ||++|++++
T Consensus       373 --~~t~~p-dGk~l~s~~  387 (441)
T d1qnia2         373 --TESRDA-DGKWLVVLS  387 (441)
T ss_dssp             --TTSTTC-CCCEEEEEE
T ss_pred             --ccccCC-CCcEEEecC
Confidence              688999 899999994

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=1.3e-12  Score=133.03  Aligned_cols=285  Identities=11%  Similarity=-0.048  Sum_probs=180.1

Q ss_pred             EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC----------ceee---ecc-cCCCCCCeEEEEEe--CCEE
Q 006126          326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK----------LVMT---NDI-AADPKDSISCFALR--GSHL  389 (660)
Q Consensus       326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---~~~-~~~h~~~v~~v~~s--~~~l  389 (660)
                      +++++.+|.|.+|++.+.+.....       -++.+...          .++.   ... ...|.........+  |++|
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~I-------pVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l   86 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRI-------PVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL   86 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEE-------CSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEE-------EeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence            456777999999999877654331       11111110          0000   000 00233334444344  8888


Q ss_pred             EEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC---eEEEEeCCC-----------------eEEEEeCCCC
Q 006126          390 FSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD---LFAFGFDDS-----------------SILVHCPCTK  446 (660)
Q Consensus       390 ~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~---~l~s~~~d~-----------------~I~iwd~~~~  446 (660)
                      ++..  ++.|.++|+.+++..+.+. ........++|+|+|   +++..+.+.                 .+..+|..+.
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            7776  6899999999999988776 456788999999999   444444332                 2355888887


Q ss_pred             ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE
Q 006126          447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI  525 (660)
Q Consensus       447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  525 (660)
                      +....+.. .+....+.|+|+|+++++++.+. .+..++..+........+.          .....+.++|+|+++.++
T Consensus       167 ~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~----------n~p~~~~~~~dGk~~~v~  235 (441)
T d1qnia2         167 DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF----------NVERIAAAVKAGNFKTIG  235 (441)
T ss_dssp             SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE----------EHHHHHHHHHTTCCBCCT
T ss_pred             eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC----------CccceEEEecCCCEEEeC
Confidence            77766653 34577899999999998887653 3434444442211111111          122235567899988777


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEECCCCeeE--EEeecccccCCCCcCcc
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLELR--CQINLTAYAQPGTISLE  602 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-g~~dg~I~iwd~~~~~~~--~~~~~~~~~~~gh~~~~  602 (660)
                      .++.+.+++....+.+..+..   ......+.++|||+++++ |..+++|.|||+.+....  ..+.. .....++....
T Consensus       236 ~~~v~vvd~~~~~~v~~~IPv---gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~-~~~~~~~~~~g  311 (441)
T d1qnia2         236 DSKVPVVDGRGESEFTRYIPV---PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL-RDTIVAEPELG  311 (441)
T ss_dssp             TCCCCEEECSSSCSSEEEECC---BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG-GGGEEECCBCC
T ss_pred             CCCcEEEEcccCCceEEEEeC---CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc-ceEEEeecccc
Confidence            778888888877777777765   344578999999998765 566899999998753210  00000 00000111222


Q ss_pred             cceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          603 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       603 v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                      ...+..+|.+ +|....+...|..|.-|++.
T Consensus       312 lgplh~~fd~-~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         312 LGPLHTTFDG-RGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             SCEEEEEECS-SSEEEEEETTTTEEEEEEHH
T ss_pred             cCcccceecC-CceEEEcccccceEEEeccc
Confidence            3345679999 79889999999999999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=6.5e-11  Score=124.46  Aligned_cols=297  Identities=7%  Similarity=-0.062  Sum_probs=159.2

Q ss_pred             eEecCCCCEEEEEeC---------CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 006126          268 STSLPDADSAVCAKS---------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW  338 (660)
Q Consensus       268 ~~~spdg~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw  338 (660)
                      ..|||||++|++++.         ++.+.+||+++    +....  +..  |...+..+.|||||+++|.. .++.+.+|
T Consensus        67 ~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~----~~~~~--l~~--~~~~~~~~~~SPDG~~ia~~-~~~~l~~~  137 (470)
T d2bgra1          67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK----RQLIT--EER--IPNNTQWVTWSPVGHKLAYV-WNNDIYVK  137 (470)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----TEECC--SSC--CCTTEEEEEECSSTTCEEEE-ETTEEEEE
T ss_pred             eEECCCCCEEEEEECCcceeeeccCceEEEEECCC----Ccccc--ccc--CCccccccccccCcceeeEe-ecccceEE
Confidence            489999999998853         56789999984    55544  332  78899999999999999885 46789999


Q ss_pred             eccCCceeeeeec--c------------------ceeEEEecCCCCceeeecccCCCCCCeEEEEEe--------CCEEE
Q 006126          339 KWQSNKQSLEEEN--V------------------NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--------GSHLF  390 (660)
Q Consensus       339 ~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--------~~~l~  390 (660)
                      +..++........  .                  ......|.+.+..+.....   +...|..+.+.        .....
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~---d~~~v~~~~~~~~~~~~~~~~~~~  214 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF---NDTEVPLIEYSFYSDESLQYPKTV  214 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE---ECTTCCEEEEEECCSTTCSSCEEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe---cCCcCceEEEEeeccCCCCCCeee
Confidence            9887765322000  0                  0011224443333222111   11112211111        00000


Q ss_pred             EE--------e-CCcEEEEECCCCeEEEEE-----------cCCCCCeEEEEEcCCC-eEEE-EeCCC-----eEEEEeC
Q 006126          391 SA--------S-GGKISIFSLETFQTLATF-----------ANPPPIATYFILLPQD-LFAF-GFDDS-----SILVHCP  443 (660)
Q Consensus       391 s~--------~-dg~I~iwd~~~~~~~~~~-----------~~~~~~v~~v~~sp~~-~l~s-~~~d~-----~I~iwd~  443 (660)
                      ..        . +..+.+|++..+......           ......+..+.|.+++ .++. ....+     .+..+|.
T Consensus       215 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~  294 (470)
T d2bgra1         215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (470)
T ss_dssp             EEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             eeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecC
Confidence            00        0 113445555443321111           0122334678888888 4433 33332     2344555


Q ss_pred             CCCceeeEee-------------ccCCCeEEEEEeCCC--CEEEEEeCCCcEEEE--EcCCCeeeeceeeeeeeeccCCC
Q 006126          444 CTKKTKAKLK-------------GHQNRITCLAYSLSL--NVLVSSGADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPE  506 (660)
Q Consensus       444 ~~~~~~~~~~-------------~~~~~v~~l~~sp~~--~~l~s~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~  506 (660)
                      .++.......             .|...  ...|.+++  .+++....||...+|  +...+.     ... +..++   
T Consensus       295 ~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-----~~~-lt~g~---  363 (470)
T d2bgra1         295 SSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTF-ITKGT---  363 (470)
T ss_dssp             TTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-----CEE-SCCSS---
T ss_pred             CCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCc-----eee-eccCC---
Confidence            5655432211             11112  22344443  345566778776555  444422     222 22333   


Q ss_pred             CCCeEEEEEecCCcEEEE-E-e-cC-----cEEEEeCCCCceeeeec--CCCCCCCeEEEEEccCCCEEEE---EecCCe
Q 006126          507 TTIVNHIQFHPDQIHLLS-I-H-EG-----QIDVYEAPTLNHTSQLV--PDKMDLPITYATYSCDGKCIYV---SCKSGH  573 (660)
Q Consensus       507 ~~~v~~~~~sp~~~~l~~-~-~-d~-----~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~dg~~l~s---g~~dg~  573 (660)
                       ..|..+ ++++++.++. + . +.     .|+-.++..+.....+.  ...|...+.+++|||||++++.   |...-.
T Consensus       364 -~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~  441 (470)
T d2bgra1         364 -WEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPL  441 (470)
T ss_dssp             -SCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCE
T ss_pred             -eeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCe
Confidence             356665 4555555543 3 2 22     25545555444444332  2245778999999999999873   333456


Q ss_pred             EEEEECCCCeeEEEee
Q 006126          574 VKVFDTSTLELRCQIN  589 (660)
Q Consensus       574 I~iwd~~~~~~~~~~~  589 (660)
                      +.+|+..+++.+..+.
T Consensus       442 ~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         442 YTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEe
Confidence            8999999999998886

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.18  E-value=6.3e-08  Score=97.35  Aligned_cols=169  Identities=8%  Similarity=0.016  Sum_probs=104.4

Q ss_pred             CCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCC-cee--eEee--ccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC
Q 006126          415 PPIATYFILLPQD-LFAFGF-DDSSILVHCPCTK-KTK--AKLK--GHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAV  486 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~-~~~--~~~~--~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~  486 (660)
                      ...+.++.|+||| +++++. ....|.+|+.... ...  ....  ........++|+|+++++.+.. .+++|.+|++.
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3457899999999 666665 3457888876533 222  1221  2346788999999999886655 57899999997


Q ss_pred             CCeeeeceeeeeeee---cc-------CCCCCCeEEEEEecCCcEEEEE--ecC-----cEEEEeCCCCceeee----ec
Q 006126          487 GWKKLCSKFLHSFQT---GL-------VPETTIVNHIQFHPDQIHLLSI--HEG-----QIDVYEAPTLNHTSQ----LV  545 (660)
Q Consensus       487 ~~~~~~~~~~~~~~~---~~-------~~~~~~v~~~~~sp~~~~l~~~--~d~-----~i~iwd~~~~~~~~~----~~  545 (660)
                      .+.........+...   +.       .........+.++|||++|+++  .+.     .|..|++.....+..    ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            754322222111110   00       0000235678999999999884  233     277777754322211    11


Q ss_pred             CCCCCCCeEEEEEcc-CCCEEEEEe-cCCeEEEEECCCCe
Q 006126          546 PDKMDLPITYATYSC-DGKCIYVSC-KSGHVKVFDTSTLE  583 (660)
Q Consensus       546 ~~~~~~~v~~~~~s~-dg~~l~sg~-~dg~I~iwd~~~~~  583 (660)
                      ..........++++| +|++|+++. .++.|.+|+++...
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            111234566799998 899887765 56899999876554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=3.5e-08  Score=95.31  Aligned_cols=241  Identities=10%  Similarity=0.088  Sum_probs=163.9

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSH  388 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~  388 (660)
                      .....++++|+|+.+++-..++.|++|+.+..-.           ..+.. .+.      ..+.......+++.   +..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~-----------~~~~~-~~~------~~~~~~~p~~~~~~~~~~~~   84 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-----------FQFGE-CGK------RDSQLLYPNRVAVVRNSGDI   84 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-----------EEECC-BSS------STTCBSSEEEEEEETTTTEE
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEE-----------EEecc-cCC------Cccccccccccccccccccc
Confidence            3568999999999777766778898887553211           11110 000      00122233445554   445


Q ss_pred             EEEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeEEE
Q 006126          389 LFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCL  462 (660)
Q Consensus       389 l~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~~l  462 (660)
                      +++..  ++.|..++. .++....+. ........+++.++| .+++....+.+.+++.. ++.+..+.  .+......+
T Consensus        85 ~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i  162 (279)
T d1q7fa_          85 IVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV  162 (279)
T ss_dssp             EEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred             ceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccccccccee
Confidence            55444  467777776 466666664 344566789999999 77777777889999854 66666653  355678889


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCc
Q 006126          463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN  539 (660)
Q Consensus       463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~  539 (660)
                      ++.++++.+++....+.|.+||... +     .+.++- .+..   .....+++.++|+.+++ . .++.|.+|+. +|+
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d~~G-~-----~~~~~g~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~  232 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFNYEG-Q-----YLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ  232 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTC-C-----EEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred             eeccceeEEeeeccccceeeeecCC-c-----eeeeecccccc---cCCcccccccCCeEEEEECCCCcEEEEECC-CCC
Confidence            9999999888888889999999865 2     222121 1222   46789999999998877 3 3457999995 788


Q ss_pred             eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126          540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE  583 (660)
Q Consensus       540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~  583 (660)
                      .+.++...........+++.|||.+++ ...++.|++|......
T Consensus       233 ~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         233 LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            877775543355688999999997655 5578999999987653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=2.1e-08  Score=100.91  Aligned_cols=252  Identities=11%  Similarity=0.060  Sum_probs=145.1

Q ss_pred             CCCCeEEEEEe--CCEEEEEeCCcEEEEECCC-CeEEEEE-cCCCCCeEEEEEcCCC-eE-EEEe--CCCeEEEEeCCC-
Q 006126          375 PKDSISCFALR--GSHLFSASGGKISIFSLET-FQTLATF-ANPPPIATYFILLPQD-LF-AFGF--DDSSILVHCPCT-  445 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~-~~~~~~~-~~~~~~v~~v~~sp~~-~l-~s~~--~d~~I~iwd~~~-  445 (660)
                      ....+..++++  +++|.++..+.+..|.+.. +...... .........+.+++++ .+ ++..  ..++|..+.+.. 
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            34456678998  7788887877788887753 2222221 1222334466778888 32 2222  234555443321 


Q ss_pred             ------------Cce---eeE-eeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCC-eeeeceeeeeeeeccCCCC
Q 006126          446 ------------KKT---KAK-LKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW-KKLCSKFLHSFQTGLVPET  507 (660)
Q Consensus       446 ------------~~~---~~~-~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~  507 (660)
                                  +..   ... -......+.++.|+|||+++++++. ...|.+|+.... .........  .....   
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~--~~~~g---  192 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD--APDPG---  192 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE--CSSTT---
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecccee--ecCCC---
Confidence                        111   111 1112335789999999999888764 457888876542 211111111  11112   


Q ss_pred             CCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeee-----ecCC------------CCCCCeEEEEEccCCCEEEEE
Q 006126          508 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQ-----LVPD------------KMDLPITYATYSCDGKCIYVS  568 (660)
Q Consensus       508 ~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~-----~~~~------------~~~~~v~~~~~s~dg~~l~sg  568 (660)
                      .....++|+|+++++++ . .+++|.+||+..++....     ....            .+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            46889999999999988 4 678999999876543211     1100            012235578999999999887


Q ss_pred             ec-C-----CeEEEEECCCCeeEEEe-ecccccCCCCcCcccceEEEEEecCCCCEEEEE-eCCCeEEEEeCCCCc
Q 006126          569 CK-S-----GHVKVFDTSTLELRCQI-NLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGRVHVIEPLESE  636 (660)
Q Consensus       569 ~~-d-----g~I~iwd~~~~~~~~~~-~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~-s~Dg~v~iw~~~~~~  636 (660)
                      .. +     +.|..|++.....+... ........|     .+..+++++|.+|++|+++ ..++.|.+|++....
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            54 1     34777877653222221 111111111     1233789998668877666 467999999886554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=9.4e-08  Score=92.15  Aligned_cols=235  Identities=11%  Similarity=0.071  Sum_probs=160.6

Q ss_pred             CeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCC--eEE-EEeCCCeEEEEeCCC
Q 006126          378 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFA-FGFDDSSILVHCPCT  445 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~------~~~v~~v~~sp~~--~l~-s~~~d~~I~iwd~~~  445 (660)
                      ....++++  ++.+++-. ...|++||.+ |+.+..+...      ...-..+++.++.  .++ ..+.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            46788888  66555544 6899999965 7777766421      1123456665554  343 3445568888885 4


Q ss_pred             CceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee-eeccCCCCCCeEEEEEecCCcEEE
Q 006126          446 KKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLL  523 (660)
Q Consensus       446 ~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~  523 (660)
                      +.....+.. .......+++.++|.++++....+.+.+++... +     .+.+. ...+.   .....+++.+++..++
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~-----~~~~~g~~~~~---~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-----VLHKFGCSKHL---EFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-----EEEEEECTTTC---SSEEEEEECSSSEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-c-----eeecccccccc---cccceeeeccceeEEe
Confidence            666666643 445678899999999888887778888888654 2     12211 11222   4678899999998877


Q ss_pred             EE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126          524 SI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISL  601 (660)
Q Consensus       524 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~  601 (660)
                      +. ..+.|++||. +++.+.++...........++++++|+.+++-.. ++.|.+|+. +|+.+..+...        ..
T Consensus       173 ~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~--------~~  242 (279)
T d1q7fa_         173 SDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------VK  242 (279)
T ss_dssp             EEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------SC
T ss_pred             eeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCC--------CC
Confidence            74 7789999997 6777777754334566889999999997777544 457999984 58777766532        11


Q ss_pred             ccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126          602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES  635 (660)
Q Consensus       602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~  635 (660)
                      ......+++.| ||.+++ ++.++.|++|+....
T Consensus       243 ~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         243 HAQCFDVALMD-DGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             CSCEEEEEEET-TTEEEE-EETTTEEEEEECSCC
T ss_pred             CCCEeEEEEeC-CCcEEE-EeCCCeEEEEEeeee
Confidence            12345889999 786555 567899999998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.6e-07  Score=97.43  Aligned_cols=333  Identities=12%  Similarity=0.054  Sum_probs=186.0

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCC-CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126          269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL  347 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~-~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~  347 (660)
                      .|.+++.++. -..+|.+.+||..++.    -..+ +.. ..+.-.+....|||||++++....-.  ++|.....    
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~----~~~l-~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~--~~~r~s~~----   90 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNT----STVL-IEGKKIESLRAIRYEISPDREYALFSYNVE--PIYQHSYT----   90 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCC----CEEE-ECTTTTTTTTCSEEEECTTSSEEEEEESCC--CCSSSCCC----
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCC----EEEE-EcCccccccccceeEECCCCCeEEEEEccc--ceeEeecc----
Confidence            6788887654 3567889999998532    2221 111 11234677889999999988775422  22322111    


Q ss_pred             eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEc-CCCCCe------
Q 006126          348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-NPPPIA------  418 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v------  418 (660)
                            ....++|..++..............+....|+  |+.||...++.|.+.+..++..++... +....+      
T Consensus        91 ------~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d  164 (465)
T d1xfda1          91 ------GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD  164 (465)
T ss_dssp             ------SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred             ------ccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccc
Confidence                  11245566555544332222234455667888  889999999999999988776655443 222211      


Q ss_pred             -----------EEEEEcCCC-eEEEEeCC-C---------------------------------eEEEEeCCCCceeeEe
Q 006126          419 -----------TYFILLPQD-LFAFGFDD-S---------------------------------SILVHCPCTKKTKAKL  452 (660)
Q Consensus       419 -----------~~v~~sp~~-~l~s~~~d-~---------------------------------~I~iwd~~~~~~~~~~  452 (660)
                                 ..+.||||| .||....| .                                 .+.++|+.++......
T Consensus       165 ~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~  244 (465)
T d1xfda1         165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (465)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             hhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEE
Confidence                       467799999 77765422 2                                 2445555443221111


Q ss_pred             ------eccCCCeEEEEEeCCCCEEEEEeC-C---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe----EEEEEecC
Q 006126          453 ------KGHQNRITCLAYSLSLNVLVSSGA-D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV----NHIQFHPD  518 (660)
Q Consensus       453 ------~~~~~~v~~l~~sp~~~~l~s~s~-d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~sp~  518 (660)
                            ......+..+.|+|+++.++.... +   ..+.++|..+++...   +.   ....+  ++|    ....|+||
T Consensus       245 ~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~---~~---~e~~~--~wv~~~~~~p~~~~d  316 (465)
T d1xfda1         245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK---KH---EDESE--AWLHRQNEEPVFSKD  316 (465)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE---EE---EEECS--SCCCCCCCCCEECTT
T ss_pred             eccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE---EE---EEcCC--ceEeccCCceeEccC
Confidence                  112224677899999886665432 2   258889998876422   11   11111  222    24679999


Q ss_pred             CcEEEE---E-ecC--cEEEEeCC------CCceeeeecCCCCCCCeEEE-EEccCCCEEEE-EecC----CeEEEEECC
Q 006126          519 QIHLLS---I-HEG--QIDVYEAP------TLNHTSQLVPDKMDLPITYA-TYSCDGKCIYV-SCKS----GHVKVFDTS  580 (660)
Q Consensus       519 ~~~l~~---~-~d~--~i~iwd~~------~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~s-g~~d----g~I~iwd~~  580 (660)
                      |+.++.   + .+|  .++..++.      .++.+..++.+  .-.|..+ .|+.+++.|+. +..+    ..++-.++.
T Consensus       317 g~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G--~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~  394 (465)
T d1xfda1         317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (465)
T ss_dssp             SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC--CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECC
Confidence            985432   3 333  45544432      23334444432  4556665 68888887764 4333    234444454


Q ss_pred             CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC---CeEEEEeCCCCce
Q 006126          581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESEV  637 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D---g~v~iw~~~~~~~  637 (660)
                      .+.....+....    . .....+  .+.||| ++++++.....   -.+.+++..+++.
T Consensus       395 g~~~~~~lt~~~----~-~~~~~~--~~~~S~-~~~y~v~~~s~~~~P~~~~~~~~~~~~  446 (465)
T d1xfda1         395 GNFNRQCLSCDL----V-ENCTYF--SASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKKK  446 (465)
T ss_dssp             TTCCCBCSSTTS----S-SSCCCC--EEEECT-TSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred             CCCcceeecccc----C-CCCCEE--EEEECC-CCCEEEEEeecCCCCeEEEEECCCCCE
Confidence            443333332110    1 122334  899999 89988744332   4678888777765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=9.3e-07  Score=84.08  Aligned_cols=213  Identities=12%  Similarity=0.046  Sum_probs=129.2

Q ss_pred             CCCCeEEEEEecCCCEEEEEECCC-cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGGRVVRLIYSHSGDFLVALTQTA-THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +...+...+|||||++||...... ...+|.                   .+..++......   .+........|+  |
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVI-------------------QTLANGAVRQVA---SFPRHNGAPAFSPDG   94 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEE-------------------EETTTCCEEEEE---CCSSCEEEEEECTTS
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceee-------------------eecccCceeEEe---eeecccccceecCCC
Confidence            467788999999999999876642 222222                   222222222222   366778888899  7


Q ss_pred             CEEEEEe--CCcE--EEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCC--eEEEEeCCCCceeeEeeccCCC
Q 006126          387 SHLFSAS--GGKI--SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNR  458 (660)
Q Consensus       387 ~~l~s~~--dg~I--~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~--~I~iwd~~~~~~~~~~~~~~~~  458 (660)
                      ..++...  ++..  ..+........ .............+++++  .+++...++  .|.+.++..+... .+..+...
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~  172 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQ  172 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSE
T ss_pred             CeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccce-eeeccccc
Confidence            7777666  3333  33333333222 222334444566777877  555555555  5666677665433 33445666


Q ss_pred             eEEEEEeCCCCEEEEEeCCC-c--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee---cCcEE
Q 006126          459 ITCLAYSLSLNVLVSSGADA-Q--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQID  531 (660)
Q Consensus       459 v~~l~~sp~~~~l~s~s~dg-~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~---d~~i~  531 (660)
                      .....|+|+++.++..+.++ .  +.+.|...+.      .. .... .   .......|+|||+.|+. +.   ...|+
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~------~~-~~~~-~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQ-VLSS-T---FLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------EE-ECCC-S---SSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             ccccccccccceeEEEeecCCceeeeEeeccccc------ce-Eeec-C---ccccceEECCCCCEEEEEEcCCCCcEEE
Confidence            77889999999988776554 3  4444554422      11 1111 1   35678899999999986 42   34799


Q ss_pred             EEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126          532 VYEAPTLNHTSQLVPDKMDLPITYATYSC  560 (660)
Q Consensus       532 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  560 (660)
                      ++++..+.. ..+..  ..+.+...+|||
T Consensus       242 ~~~~dg~~~-~~lt~--~~g~~~~p~WSP  267 (269)
T d2hqsa1         242 LVSTDGRFK-ARLPA--TDGQVKFPAWSP  267 (269)
T ss_dssp             EEETTSCCE-EECCC--SSSEEEEEEECC
T ss_pred             EEECCCCCE-EEEeC--CCCcEEeEEeCC
Confidence            999976554 44433  256778889998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=2.1e-07  Score=88.59  Aligned_cols=234  Identities=13%  Similarity=0.038  Sum_probs=147.5

Q ss_pred             CCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee
Q 006126          376 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       376 ~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      ...-..+++.  |+..++..  .+.+..++...................++++++| .+++....+.+++++-.++..+.
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            3456788998  66555544  4677777665433222211222334678999999 76766666677776655554443


Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ  529 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~  529 (660)
                      ... ......++++.++++++++-..+..+..++......    ... ...+.    .....++++|+|+.+++. .++.
T Consensus        93 ~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~-~~~~~----~~p~~i~~~~~g~~~v~~~~~~~  162 (260)
T d1rwia_          93 PFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVL-PFTGL----NDPDGVAVDNSGNVYVTDTDNNR  162 (260)
T ss_dssp             CCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EEC-CCCSC----CSCCEEEECTTCCEEEEEGGGTE
T ss_pred             eee-eeeecccccccccceeEeecccccccccccccccee----eee-eeccc----CCcceeeecCCCCEeeecccccc
Confidence            332 235678999999999888776777787877765321    111 11111    345689999999977774 6788


Q ss_pred             EEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEE
Q 006126          530 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA  609 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~  609 (660)
                      |..+|....... .+.. ........++++++|+++++....+.|..++...... ..+..         ...-.+..++
T Consensus       163 i~~~d~~~~~~~-~~~~-~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~---------~~~~~P~~i~  230 (260)
T d1rwia_         163 VVKLEAESNNQV-VLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPF---------TGLNTPLAVA  230 (260)
T ss_dssp             EEEECTTTCCEE-ECCC-SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCC---------CSCCCEEEEE
T ss_pred             ccccccccceee-eeec-cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEcc---------CCCCCeEEEE
Confidence            999998654432 3322 2256678999999999888888888999888765432 22211         1112355899


Q ss_pred             EecCCCCEEEEEeCCCeEEEEeC
Q 006126          610 AHPLEPNRIALGLTNGRVHVIEP  632 (660)
Q Consensus       610 ~sp~d~~~l~s~s~Dg~v~iw~~  632 (660)
                      +++ +|+++++-..+++|+.++.
T Consensus       231 ~d~-~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDS-DRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECT-TCCEEEEEGGGTEEEEECC
T ss_pred             EeC-CCCEEEEECCCCEEEEEeC
Confidence            999 7888888777776665443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.6e-06  Score=82.30  Aligned_cols=216  Identities=11%  Similarity=0.047  Sum_probs=134.4

Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC---eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126          396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL  471 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  471 (660)
                      .|.+.|.. |...+.+......+.+.+||||| .||......   .+.+.+...+.. ..+..+........|+|+|+.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            47777865 44444454556678899999999 777655433   577777766554 4455577888899999999998


Q ss_pred             EEEeC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecC--cEEEEeCCCCceeeeecC
Q 006126          472 VSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVP  546 (660)
Q Consensus       472 ~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~  546 (660)
                      +.... ++...++.......   .... .....    .......+++++..++. + .++  .|.+.++..+...... .
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~  168 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASG---QIRQ-VTDGR----SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-W  168 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTC---CEEE-CCCCS----SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-C
T ss_pred             eEeeecCCccceeecccccc---ccee-eeecc----ccccccccccccccceecccccCCceEeeeecccccceeee-c
Confidence            87664 33333333222111   1111 11111    34456678888877766 4 344  5777777665443322 2


Q ss_pred             CCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          547 DKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       547 ~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                        .........|+|+++.++..+.++   .+.+.+...+... .+..         .....  ...|+| ||+.|+..+.
T Consensus       169 --~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---------~~~~~--~p~~SP-DG~~i~f~s~  233 (269)
T d2hqsa1         169 --EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS---------TFLDE--TPSLAP-NGTMVIYSSS  233 (269)
T ss_dssp             --SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC---------SSSCE--EEEECT-TSSEEEEEEE
T ss_pred             --ccccccccccccccceeEEEeecCCceeeeEeecccccce-Eeec---------Ccccc--ceEECC-CCCEEEEEEc
Confidence              356677889999999998877654   4555666655432 2211         22223  789999 8999876554


Q ss_pred             ---CCeEEEEeCCCCce
Q 006126          624 ---NGRVHVIEPLESEV  637 (660)
Q Consensus       624 ---Dg~v~iw~~~~~~~  637 (660)
                         ...|++|++..+..
T Consensus       234 ~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         234 QGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             ETTEEEEEEEETTSCCE
T ss_pred             CCCCcEEEEEECCCCCE
Confidence               34789999987765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=5.5e-07  Score=87.69  Aligned_cols=226  Identities=12%  Similarity=0.002  Sum_probs=147.4

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL  389 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l  389 (660)
                      ..+..++++|||+++++...+++|..|+......           ..+              .....+.+++|.  |+++
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-----------~~~--------------~~~~~~~gla~~~dG~l~   82 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------IHA--------------TVEGKVSGLAFTSNGDLV   82 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------EEE--------------ECSSEEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-----------EEE--------------cCCCCcceEEEcCCCCeE
Confidence            3688999999999988888888887666433221           111              245668899999  7777


Q ss_pred             EEEe-CCcEEEEECCC--CeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee----------c
Q 006126          390 FSAS-GGKISIFSLET--FQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK----------G  454 (660)
Q Consensus       390 ~s~~-dg~I~iwd~~~--~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~----------~  454 (660)
                      ++.. ++.+..|+...  +....... ........+++.+++ .+++.+.++.+..+|...+.......          .
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (302)
T d2p4oa1          83 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  162 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccC
Confidence            7776 67888777653  22222222 344567889999999 88888888999999988765332221          1


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEE
Q 006126          455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY  533 (660)
Q Consensus       455 ~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iw  533 (660)
                      .......+.++. +..+++.+..+.|..++............  ...+     .....+++.++|++.++ ..++.|..+
T Consensus       163 ~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~-----~~pdgia~d~dG~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         163 VFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEI--FVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRI  234 (302)
T ss_dssp             CSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEE--EEES-----CCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             cccccccccccC-CceeeecCCCCeEEecccccccccccccc--ccCC-----CCCcceEECCCCCEEEEEcCCCcEEEE
Confidence            123456666654 34556667788899898876432211111  1112     24567999999997777 478889999


Q ss_pred             eCCCCceeeeecCCCCCCCeEEEEE---ccCCCEEEEEecC
Q 006126          534 EAPTLNHTSQLVPDKMDLPITYATY---SCDGKCIYVSCKS  571 (660)
Q Consensus       534 d~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l~sg~~d  571 (660)
                      +.. ++..........-...++++|   ++|++.|+.++..
T Consensus       235 ~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         235 APD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            874 443333322222456889999   6788888876554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=1.1e-06  Score=85.99  Aligned_cols=244  Identities=11%  Similarity=0.022  Sum_probs=146.6

Q ss_pred             CCeEEEEEecCCCEEEEEEC-------CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQ-------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL  384 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  384 (660)
                      .....++|.|+|+..++...       +|.|..|+..++..           ..+.....        ......-..++|
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~-----------~~~~~~~~--------~~~~g~P~Gl~~   78 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----------TVICKPEV--------NGYGGIPAGCQC   78 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----------EEEECCEE--------TTEECCEEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcE-----------EEEECCcc--------ccCCCcceeEEE
Confidence            34677899999996665332       24565555544432           11110000        011123567888


Q ss_pred             e--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC----CCeEEEEEcCCC-eEEEEeC---------------CCeEEEE
Q 006126          385 R--GSHLFSAS-GGKISIFSLETFQTLATFANPP----PIATYFILLPQD-LFAFGFD---------------DSSILVH  441 (660)
Q Consensus       385 s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~----~~v~~v~~sp~~-~l~s~~~---------------d~~I~iw  441 (660)
                      .  ++.++++. .+.|..++...+..........    ...+.+++.++| ..++...               +|.|+.+
T Consensus        79 ~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~  158 (314)
T d1pjxa_          79 DRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             CSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             eCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEE
Confidence            8  67777777 6778888877544322111111    134678999999 5554321               2355556


Q ss_pred             eCCCCceeeEeeccCCCeEEEEEeCCCC-----EEEEEeCCCcEEEEEcCCCeeeecee-eeeeeeccCCCCCCeEEEEE
Q 006126          442 CPCTKKTKAKLKGHQNRITCLAYSLSLN-----VLVSSGADAQLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQF  515 (660)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~l~~sp~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~  515 (660)
                      +.. ++..... ..-...+.++|+|++.     +.++-+..+.|..||+.......... .........   .....+++
T Consensus       159 ~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~---~~pdGiav  233 (314)
T d1pjxa_         159 TTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADGMDF  233 (314)
T ss_dssp             CTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEEEEE
T ss_pred             eec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc---ccceeeEE
Confidence            543 4433322 2334457899999764     44555678889999876432222221 111111111   34567999


Q ss_pred             ecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE-EEEecCCeEEEEECCC
Q 006126          516 HPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTST  581 (660)
Q Consensus       516 sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~sg~~dg~I~iwd~~~  581 (660)
                      .++|+..++. ..+.|.+||.+.+.....+...  ....++++|.||++.| ++.+.+|.|+.+++..
T Consensus       234 D~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            9999987774 6789999999888776666542  4678899999999755 5556678888888653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.87  E-value=2.7e-07  Score=90.01  Aligned_cols=231  Identities=10%  Similarity=-0.029  Sum_probs=145.4

Q ss_pred             CeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce-eeEe
Q 006126          378 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKL  452 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~  452 (660)
                      .+..+++.  |+++++.. +++|..|+... + ...+......+.+++|+++| ++++...++.+..|+...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            57789999  77777766 78898888653 3 33344556778999999999 888888888888887654321 1222


Q ss_pred             --eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee--eeeeccCCCCCCeEEEEEecCCcEEEE--Ee
Q 006126          453 --KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLS--IH  526 (660)
Q Consensus       453 --~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~  526 (660)
                        .......+.+.+.++++++++.+.++.+..+|...+.......-.  .....+. .......+.+..  ..++.  ..
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ngi~~~~--~~l~~~~~~  183 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES-VFPAANGLKRFG--NFLYVSNTE  183 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC-CSCSEEEEEEET--TEEEEEETT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccC-cccccccccccC--CceeeecCC
Confidence              124456889999999999998888999999998875422110000  0000011 002445566654  44544  36


Q ss_pred             cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126          527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL  606 (660)
Q Consensus       527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~  606 (660)
                      .+.|+.++.....................++++++|++.++...++.|..++... +........        ......+
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~--------~~~~~pt  254 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAE--------QGVIGST  254 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGG--------GTCTTEE
T ss_pred             CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecC--------CCCCCce
Confidence            7888888876543322111101134456799999999888888889999998764 333332211        1112356


Q ss_pred             EEEE---ecCCCCEEEEEeC
Q 006126          607 VIAA---HPLEPNRIALGLT  623 (660)
Q Consensus       607 ~v~~---sp~d~~~l~s~s~  623 (660)
                      +++|   +| |++.|..++.
T Consensus       255 ~vafg~~~~-D~~~Lyvtt~  273 (302)
T d2p4oa1         255 AVAFGQTEG-DCTAIYVVTN  273 (302)
T ss_dssp             EEEECCSTT-TTTEEEEEEC
T ss_pred             EEEEcCCCC-CCCEEEEECC
Confidence            8999   56 6777765544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=9.8e-07  Score=83.79  Aligned_cols=235  Identities=11%  Similarity=-0.000  Sum_probs=144.4

Q ss_pred             CCCCeEEEEEecCCCEEEEEE-CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126          310 FGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G  386 (660)
Q Consensus       310 h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~  386 (660)
                      +......++++++|+..++.. ..+.+..++......           ....          .  +-......++++  +
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-----------~~~~----------~--~~~~~p~gvav~~~g   68 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------TVLP----------F--NGLYQPQGLAVDGAG   68 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE-----------EECC----------C--CSCCSCCCEEECTTC
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-----------EEec----------c--CCccCceEEEEcCCC
Confidence            345678999999999666544 456666554433321           0000          0  112234567777  5


Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY  464 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~  464 (660)
                      ..+++.. .+.+++++-.++..+.... ......++++.+++ ++++-..+..+..++..................++++
T Consensus        69 ~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  147 (260)
T d1rwia_          69 TVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  147 (260)
T ss_dssp             CEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE
T ss_pred             CEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeee
Confidence            5555544 4556665555444433222 23456899999999 6666666777888876654322221122345678999


Q ss_pred             eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeee
Q 006126          465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ  543 (660)
Q Consensus       465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~  543 (660)
                      +++|+.+++...++.|..+|.......     . ......   .....+++.++|+++++. ..+.|..++..... ...
T Consensus       148 ~~~g~~~v~~~~~~~i~~~d~~~~~~~-----~-~~~~~~---~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~  217 (260)
T d1rwia_         148 DNSGNVYVTDTDNNRVVKLEAESNNQV-----V-LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STV  217 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCCEE-----E-CCCSSC---CSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEE
T ss_pred             cCCCCEeeeccccccccccccccceee-----e-eecccc---CCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEE
Confidence            999998888888899999998763211     1 111222   457889999999887775 56788888865432 223


Q ss_pred             ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                      +.. ..-.....++++++|+++++-..+++|+.++.
T Consensus       218 ~~~-~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         218 LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCC-CSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             Ecc-CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            322 12356789999999988777666777765544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.84  E-value=5.8e-06  Score=80.86  Aligned_cols=230  Identities=11%  Similarity=0.050  Sum_probs=144.9

Q ss_pred             CeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC----CCeEEEEeCCCCcee
Q 006126          378 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD----DSSILVHCPCTKKTK  449 (660)
Q Consensus       378 ~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~----d~~I~iwd~~~~~~~  449 (660)
                      .+..++|.  |++.++-. .+.|..|+..++.....+.........++++++| ++++...    .+.+...+..++...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            35678887  66444444 7899999998877666666666678899999999 5555433    234666666655444


Q ss_pred             eEeec--cCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126          450 AKLKG--HQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  521 (660)
Q Consensus       450 ~~~~~--~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  521 (660)
                      .....  -....+.+++.++|++.++....      +.+..++.....      +..+..+-    ...+.++|+|+++.
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~------~~~~~~~~----~~pnGia~s~dg~~  190 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT------VTPIIQNI----SVANGIALSTDEKV  190 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC------EEEEEEEE----SSEEEEEECTTSSE
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce------eEEEeecc----ceeeeeeeccccce
Confidence            33322  23457789999999876654321      235555544321      11111111    35678999999998


Q ss_pred             EEEE--ecCcEEEEeCCCC-ceeeee----c-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc
Q 006126          522 LLSI--HEGQIDVYEAPTL-NHTSQL----V-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY  593 (660)
Q Consensus       522 l~~~--~d~~i~iwd~~~~-~~~~~~----~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~  593 (660)
                      |+++  ..+.|+.||+... ......    . ..........++++++|++.++...++.|.+||. .|+.+..+..+..
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            7664  6789999997632 211111    0 0011233567999999998888888999999995 6888887765321


Q ss_pred             cCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          594 AQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       594 ~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                       ..+   ....+++++|.| +...+++...
T Consensus       270 -~~~---~~~~~~~~~~~~-~~~~~~~t~~  294 (319)
T d2dg1a1         270 -DEG---HMLRSTHPQFIP-GTNQLIICSN  294 (319)
T ss_dssp             -GGT---CSCBCCEEEECT-TSCEEEEEEE
T ss_pred             -CCC---cCceeeeEEEeC-CCCEEEEEcC
Confidence             112   122355899999 6666655443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.83  E-value=2.3e-06  Score=83.57  Aligned_cols=232  Identities=13%  Similarity=0.074  Sum_probs=146.7

Q ss_pred             eEEEEEe--CCEEEEEe--------CCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCC-eEEEEeCCCeEEEEeC
Q 006126          379 ISCFALR--GSHLFSAS--------GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFDDSSILVHCP  443 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~--------dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~  443 (660)
                      ...++|.  |++.++..        +|.|..||..++.........    ...-..++|.+++ .++++...+.|..+|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            5567787  66555432        357889999887654443321    1234679999999 8888887778999997


Q ss_pred             CCCceeeEeeccC----CCeEEEEEeCCCCEEEEEeC---------------CCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126          444 CTKKTKAKLKGHQ----NRITCLAYSLSLNVLVSSGA---------------DAQLCVWDAVGWKKLCSKFLHSFQTGLV  504 (660)
Q Consensus       444 ~~~~~~~~~~~~~----~~v~~l~~sp~~~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~  504 (660)
                      ..+..........    ...+.+++.++|++.++-..               +|.|..++... +.     .. ...+ .
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~-----~~-~~~~-~  171 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM-----IQ-VDTA-F  171 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE-----EE-EEEE-E
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ce-----eE-eeCC-c
Confidence            7543221111111    13578999999988776432               23344444332 11     11 1111 1


Q ss_pred             CCCCCeEEEEEecCCc----EEEEE--ecCcEEEEeCCCCceee------eecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126          505 PETTIVNHIQFHPDQI----HLLSI--HEGQIDVYEAPTLNHTS------QLVPDKMDLPITYATYSCDGKCIYVSCKSG  572 (660)
Q Consensus       505 ~~~~~v~~~~~sp~~~----~l~~~--~d~~i~iwd~~~~~~~~------~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg  572 (660)
                         ...+.++|+|++.    .|+++  ..+.|+.||+.....+.      .+.. ........+++..+|++.++....+
T Consensus       172 ---~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~-~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         172 ---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             ---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             ---ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc-cccccceeeEEecCCcEEEEEcCCC
Confidence               2456899999764    45553  66789888875432221      1211 1123456899999999888887889


Q ss_pred             eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEeCCCeEEEEeCC
Q 006126          573 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPL  633 (660)
Q Consensus       573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s~Dg~v~iw~~~  633 (660)
                      .|++||...++....+...        .  -.+.+++|.| |++ ++++.+.+|.|.-.++.
T Consensus       248 ~I~~~dp~~g~~~~~i~~p--------~--~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCP--------F--EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEECTTCBSCSEEEECS--------S--SCEEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEeCCCCEEEEEEECC--------C--CCEEEEEEeC-CCCEEEEEECCCCcEEEEECC
Confidence            9999999988877666532        1  1245899999 776 56777778888887764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.6e-07  Score=93.85  Aligned_cols=203  Identities=10%  Similarity=-0.008  Sum_probs=126.9

Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec---cCCCeEEEEEeCCCCEEEEEe---------CCCcEEEEEcCC
Q 006126          421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAYSLSLNVLVSSG---------ADAQLCVWDAVG  487 (660)
Q Consensus       421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~s~s---------~dg~i~vwd~~~  487 (660)
                      ..|.+++ ++. -..+|.|.+||+.+++....+..   ....+....||||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            3588888 543 35678899999998866444433   223567788999999988764         356789999998


Q ss_pred             CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCe--------------
Q 006126          488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPI--------------  553 (660)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v--------------  553 (660)
                      +...   .+. ......   ..+....|||||+.+|...++.|++.+..++..++....+. ...|              
T Consensus       101 ~~~~---~l~-~~~~~~---~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~-~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1         101 GDPQ---SLD-PPEVSN---AKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGK-EGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             CCCE---ECC-CTTCCS---CCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCB-TTTEEEEECCHHHHHTTS
T ss_pred             Ccee---ecc-CccCCc---cccceeeeccCCceEEEEecceEEEEecCCCceEEEecccC-cceeeccccchhhhhhhc
Confidence            6532   222 111111   35667899999999999888999999988776655443321 2222              


Q ss_pred             ---EEEEEccCCCEEEEEecC-CeEEEE---------------------------------ECCCCeeEEEeecccccCC
Q 006126          554 ---TYATYSCDGKCIYVSCKS-GHVKVF---------------------------------DTSTLELRCQINLTAYAQP  596 (660)
Q Consensus       554 ---~~~~~s~dg~~l~sg~~d-g~I~iw---------------------------------d~~~~~~~~~~~~~~~~~~  596 (660)
                         ..+-|||||++||....| ..|..+                                 |+.++.......+.    .
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~----~  248 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP----D  248 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC----C
T ss_pred             cccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEecc----C
Confidence               467799999999976533 333333                                 33332211111100    0


Q ss_pred             CCcCcccceEEEEEecCCCCEEEEEeC-C---CeEEEEeCCCCce
Q 006126          597 GTISLELYPLVIAAHPLEPNRIALGLT-N---GRVHVIEPLESEV  637 (660)
Q Consensus       597 gh~~~~v~~~~v~~sp~d~~~l~s~s~-D---g~v~iw~~~~~~~  637 (660)
                      .......++..+.|+| ++++++.... +   ..|.++|+.+++.
T Consensus       249 ~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         249 DPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             CGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             cCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcE
Confidence            0011223456889999 7776655432 2   3678889988865

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=4.3e-05  Score=74.43  Aligned_cols=208  Identities=13%  Similarity=0.086  Sum_probs=132.3

Q ss_pred             CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCCC
Q 006126          414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWDAVGW  488 (660)
Q Consensus       414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----g~i~vwd~~~~  488 (660)
                      ....+..++|.++| +.++....+.|+.|+..++.....+.........++++++|+++++...+    +.+...+..+.
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            33445689999999 77777788999999998877666665566778999999999988776433    33445555442


Q ss_pred             eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe-------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126          489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD  561 (660)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d  561 (660)
                      ..      ........ .....+.+++.++|++.++..       .+.+..++.. ++.+..+..  .-.....++|+||
T Consensus       118 ~~------~~~~~~~~-~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~--~~~~pnGia~s~d  187 (319)
T d2dg1a1         118 NL------QDIIEDLS-TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQ--NISVANGIALSTD  187 (319)
T ss_dssp             SC------EEEECSSS-SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEE--EESSEEEEEECTT
T ss_pred             ee------eeeccCCC-cccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEee--ccceeeeeeeccc
Confidence            21      10111110 014578899999999777632       1346666654 333333322  1345678999999


Q ss_pred             CCEEEEE-ecCCeEEEEECCCC-eeEEEeecc-cccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126          562 GKCIYVS-CKSGHVKVFDTSTL-ELRCQINLT-AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       562 g~~l~sg-~~dg~I~iwd~~~~-~~~~~~~~~-~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      ++.|+.+ +..+.|+.|++... ......... .....+    .-..-.+++.+ +|++.++....+.|.+|+. +|+.
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~----~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~  260 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG----HEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYP  260 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS----SSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCC----ccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcE
Confidence            9976554 55789999998642 222211110 000001    01133788999 8999999889999999997 5665

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.54  E-value=0.00011  Score=70.55  Aligned_cols=218  Identities=11%  Similarity=0.040  Sum_probs=138.3

Q ss_pred             EEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec--
Q 006126          381 CFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--  454 (660)
Q Consensus       381 ~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~--  454 (660)
                      +..|.  ++.|.-..  .+.|..||..+++.. .+. ....+.++++.++|.++.++.+ .+.++|..+++.......  
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeec
Confidence            34455  34444444  578999999887653 232 3456788999999933344544 588999998875433221  


Q ss_pred             --cCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e
Q 006126          455 --HQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H  526 (660)
Q Consensus       455 --~~~~v~~l~~sp~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~  526 (660)
                        ....++.+.+.|+|++.++...    .+.-.+|.+..++...      +..+.    ...+.++|+++++.++.+  .
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~------~~~~~----~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK------LFADI----SIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE------EEEEE----SSEEEEEECTTSCEEEEEETT
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE------Eeecc----CCcceeeecCCCceEEEeecc
Confidence              1235788999999987766432    2345566666643211      12222    356789999999987764  5


Q ss_pred             cCcEEEEeCCCC------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126          527 EGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS  600 (660)
Q Consensus       527 d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~  600 (660)
                      .+.|+.|++...      +................++++.+|++.++.-..+.|..||. .|+.+..+..+        .
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP--------~  239 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--------G  239 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--------C
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC--------C
Confidence            678988887421      11111111122456788999999998888877899999995 58888887643        1


Q ss_pred             cccceEEEEEecCCCCEE-EEEe
Q 006126          601 LELYPLVIAAHPLEPNRI-ALGL  622 (660)
Q Consensus       601 ~~v~~~~v~~sp~d~~~l-~s~s  622 (660)
                        -++++++|-..|.+.| +|..
T Consensus       240 --~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         240 --KQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             --SBEEEEEEESTTSCEEEEEEB
T ss_pred             --CceEEEEEeCCCCCEEEEEEC
Confidence              1356899963365554 4443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.47  E-value=0.00017  Score=69.13  Aligned_cols=186  Identities=13%  Similarity=-0.017  Sum_probs=121.0

Q ss_pred             CCCeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCC-eEEEEeC----CCeEEEEeCCC
Q 006126          376 KDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAFGFD----DSSILVHCPCT  445 (660)
Q Consensus       376 ~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~-~l~s~~~----d~~I~iwd~~~  445 (660)
                      ...+.++++. +..|+.++...+.++|..+++.......    ....++.+.+.|+| ..++...    .+.-.+|.+..
T Consensus        58 ~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~  137 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK  137 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET
T ss_pred             CCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC
Confidence            3457788888 5555556655699999999876544332    12357889999999 4333321    22445666666


Q ss_pred             CceeeEeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeee--eceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          446 KKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKL--CSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                      ++....... -...+.+.|+++++.++.+ +..+.|..|++......  ..........+..   +....+++..+|.+.
T Consensus       138 g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~---g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         138 GKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIW  213 (295)
T ss_dssp             TEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEE
T ss_pred             CcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccc---ccccceEEcCCCCEE
Confidence            665544433 3456789999999876544 55788998987542211  1111110111222   467789999999888


Q ss_pred             EEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEE
Q 006126          523 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVS  568 (660)
Q Consensus       523 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg  568 (660)
                      ++. ..+.|..||. +++.+..+...  ...+++++|. +|.+.|+..
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~lP--~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEE
T ss_pred             eeeeCCCceEEecC-CCcEeeEecCC--CCceEEEEEeCCCCCEEEEE
Confidence            775 6778999996 78888888663  4569999996 787766644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.33  E-value=7.2e-05  Score=70.72  Aligned_cols=222  Identities=13%  Similarity=0.130  Sum_probs=125.7

Q ss_pred             eCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCC-----eEEEEeCCCCceeeEee----
Q 006126          385 RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DDS-----SILVHCPCTKKTKAKLK----  453 (660)
Q Consensus       385 s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~-----~I~iwd~~~~~~~~~~~----  453 (660)
                      +|+.++..++|.|.+.|+.+++.. .+..+...+...+||||| .|+... .++     .|.+++..+++..+...    
T Consensus        11 ~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~   89 (281)
T d1k32a2          11 HGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK   89 (281)
T ss_dssp             ETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred             CCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence            377888888888999999988764 456666778899999999 666443 222     48888888776543211    


Q ss_pred             --ccCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126          454 --GHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-  524 (660)
Q Consensus       454 --~~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-  524 (660)
                        ..........|+|+|+.++.....      ..+...+...+..     .. ..   .   ...... +.+++..++. 
T Consensus        90 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~---~---~~~~~~-~~~~~~~~~~~  156 (281)
T d1k32a2          90 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF-----VP-LN---L---GPATHI-LFADGRRVIGR  156 (281)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE-----EE-CC---S---CSCSEE-EEETTEEEEEE
T ss_pred             ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee-----EE-ec---C---Ccccee-eecCCCeEEEe
Confidence              122345678899999998875432      2344555554321     11 11   1   122233 3444444433 


Q ss_pred             E-ecC-----------cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec--CCeEEEEECCCCeeEEEeec
Q 006126          525 I-HEG-----------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINL  590 (660)
Q Consensus       525 ~-~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~--dg~I~iwd~~~~~~~~~~~~  590 (660)
                      . .+.           ....+........... .  .........++++. .+.....  ...|+++|+.+++...... 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~-  231 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-D--MSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTS-  231 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-C--CSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCC-
T ss_pred             eccccceeeeeccCCcceeeeeccccceeecc-C--Cccccceeeeeccc-cceecccccccceEEEeCCCCceEEeec-
Confidence            2 111           1122222122222111 1  13344455565543 2222222  2468888988776544321 


Q ss_pred             ccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          591 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       591 ~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                               .....  ...|+| ||+.|+.. .++.|+++|+.+++..
T Consensus       232 ---------~~~~~--~~~~Sp-DG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         232 ---------FTDYY--PRHLNT-DGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             ---------CCSSC--EEEEEE-SSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             ---------CCCcc--cccCcC-CCCEEEEE-eCCEEEEEECCCCCEE
Confidence                     11123  347899 88887764 4788999999988763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.21  E-value=0.00061  Score=71.50  Aligned_cols=249  Identities=10%  Similarity=0.019  Sum_probs=145.8

Q ss_pred             EEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCC----CCeEEEEEcCCCeEEEEe------CCCeEEEEeCCCCcee
Q 006126          381 CFALRGSHLFSAS-GGKISIFSLETFQTLATFANPP----PIATYFILLPQDLFAFGF------DDSSILVHCPCTKKTK  449 (660)
Q Consensus       381 ~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~----~~v~~v~~sp~~~l~s~~------~d~~I~iwd~~~~~~~  449 (660)
                      .+++.+..++.++ ||.+.-.|.++|+.........    ..++..-.-.++.++.+.      .+|.|+-+|+.+|+.+
T Consensus       110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             cceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEE
Confidence            3455655666666 9999999999999887764221    111111111234444444      3678999999999988


Q ss_pred             eEeeccC-------------------------------------CCe-EEEEEeCCCCEEEEEeC---------------
Q 006126          450 AKLKGHQ-------------------------------------NRI-TCLAYSLSLNVLVSSGA---------------  476 (660)
Q Consensus       450 ~~~~~~~-------------------------------------~~v-~~l~~sp~~~~l~s~s~---------------  476 (660)
                      -++....                                     ..+ ...++.+....+..+..               
T Consensus       190 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~  269 (571)
T d2ad6a1         190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccc
Confidence            7654211                                     112 23456676666665544               


Q ss_pred             -CCcEEEEEcCCCeeeeceeeeeeeeccC----CCCCCeEEEEEecCCcE--E-EE-EecCcEEEEeCCCCceeeeecCC
Q 006126          477 -DAQLCVWDAVGWKKLCSKFLHSFQTGLV----PETTIVNHIQFHPDQIH--L-LS-IHEGQIDVYEAPTLNHTSQLVPD  547 (660)
Q Consensus       477 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~--l-~~-~~d~~i~iwd~~~~~~~~~~~~~  547 (660)
                       ...+.-.|.++|+..-.....    .|.    .............+++.  + +. +.+|.++++|..+|+.+......
T Consensus       270 ~s~svvAld~~TG~~~W~~q~~----~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~  345 (571)
T d2ad6a1         270 WTMTIWGRDLDTGMAKWGYQKT----PHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD  345 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESS----TTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             cccceeeeeccchhheeccccc----CccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccC
Confidence             235777888888754322211    110    00012222223334542  2 23 48899999999999876432211


Q ss_pred             CC------------------------------------C-CCeEEEEEccCCCEEEEEecC-------------------
Q 006126          548 KM------------------------------------D-LPITYATYSCDGKCIYVSCKS-------------------  571 (660)
Q Consensus       548 ~~------------------------------------~-~~v~~~~~s~dg~~l~sg~~d-------------------  571 (660)
                      ..                                    . ..-...+++|+...++....+                   
T Consensus       346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~  425 (571)
T d2ad6a1         346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV  425 (571)
T ss_dssp             TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             CcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccc
Confidence            00                                    0 000125677877777654432                   


Q ss_pred             ------------------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126          572 ------------------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL  633 (660)
Q Consensus       572 ------------------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~  633 (660)
                                        |.|.-+|+.+|+.+.......         +...-.++-   .+.++++++.||.++-+|..
T Consensus       426 ~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~---------~~~~g~l~T---agglVf~G~~dg~l~A~Da~  493 (571)
T d2ad6a1         426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---------AAWGGTLYT---KGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---------CCCSBCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             ccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC---------CCCcceeEe---cCCEEEEECCCCeEEEEECC
Confidence                              467788889998888765321         111001221   35678889999999999999


Q ss_pred             CCceeccCCCCc
Q 006126          634 ESEVEWGKLPFT  645 (660)
Q Consensus       634 ~~~~~w~~~~~~  645 (660)
                      +|+..|....+.
T Consensus       494 tGe~lW~~~l~~  505 (571)
T d2ad6a1         494 DGKELWNFKMPS  505 (571)
T ss_dssp             TCCEEEEEECSS
T ss_pred             CCcEEEEEECCC
Confidence            999999765554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=5.6e-05  Score=71.49  Aligned_cols=227  Identities=11%  Similarity=0.021  Sum_probs=120.6

Q ss_pred             EecCC--CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CC-----cEEEEec
Q 006126          269 TSLPD--ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TA-----THKLWKW  340 (660)
Q Consensus       269 ~~spd--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg-----~i~vw~~  340 (660)
                      ..|||  |+.+|..+. |.|.+.|+.+    +...+++-    +...+...+|||||++||.... ++     .|.+++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~----g~~~~Lt~----~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKS----GSTRKIVS----NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTT----CCEEEEEC----SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCC----CCEEEEec----CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            45899  999988754 5677778874    55555432    5678899999999999987653 22     2333333


Q ss_pred             cCCceeeeeeccceeEEEecCCCCceeeecccC----CCCCCeEEEEEe--CCEEEEEe-C------CcEEEEECCCCeE
Q 006126          341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA----DPKDSISCFALR--GSHLFSAS-G------GKISIFSLETFQT  407 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~v~~s--~~~l~s~~-d------g~I~iwd~~~~~~  407 (660)
                      .++                     ...+.....    ..........|+  ++.|+... .      ..+...+...+..
T Consensus        76 ~~g---------------------~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          76 ENG---------------------EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             TTT---------------------EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             cCC---------------------ceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            333                     322211100    122335567787  77777654 1      1345556555444


Q ss_pred             EEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-----------eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEE
Q 006126          408 LATFANPPPIATYFILLPQD--LFAFGFDDS-----------SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS  474 (660)
Q Consensus       408 ~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~-----------~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  474 (660)
                      ....   ...... .+.+++  .++....+.           ............. ....+........++++. .+...
T Consensus       135 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~  208 (281)
T d1k32a2         135 VPLN---LGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR-IYFIT  208 (281)
T ss_dssp             EECC---SCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE-EEEEE
T ss_pred             EEec---CCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc-cceec
Confidence            3222   122222 344555  333332221           1122222222222 222233444555566543 23333


Q ss_pred             eCC--CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 006126          475 GAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS  542 (660)
Q Consensus       475 s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~  542 (660)
                      ..+  ..|.++|+.++...   .   +....     ......|+|||+.|+...++.|+++|+.+++...
T Consensus       209 ~~~~~~~l~~~d~~g~~~~---~---lt~~~-----~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         209 DIDGFGQIYSTDLDGKDLR---K---HTSFT-----DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CTTSSCEEEEEETTSCSCE---E---CCCCC-----SSCEEEEEESSSCEEEEETTEEEEECTTTCCEEE
T ss_pred             ccccccceEEEeCCCCceE---E---eecCC-----CcccccCcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence            333  35778888774321   1   11111     1223468999999998888999999998877543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=0.00033  Score=68.38  Aligned_cols=188  Identities=11%  Similarity=0.056  Sum_probs=121.2

Q ss_pred             CCEEEEEe--CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCC---eEEEEeCCC------------------eEEEE
Q 006126          386 GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD---LFAFGFDDS------------------SILVH  441 (660)
Q Consensus       386 ~~~l~s~~--dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~---~l~s~~~d~------------------~I~iw  441 (660)
                      |++++...  ++.|.+.|+.+.++.+.+.. ....+..+...+++   +++.++.+.                  .+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            67888887  68999999999998776653 34556666776554   777766532                  36778


Q ss_pred             eCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC---------------cEEE-----------------------E
Q 006126          442 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCV-----------------------W  483 (660)
Q Consensus       442 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---------------~i~v-----------------------w  483 (660)
                      |..+.+....+.- .+....+.++++|+++++.+.+.               .+.+                       -
T Consensus       179 D~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         179 DADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             ETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            9888877665542 33566789999999999877431               1233                       3


Q ss_pred             EcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCcee--------eeecC-CCCCCC
Q 006126          484 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHT--------SQLVP-DKMDLP  552 (660)
Q Consensus       484 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~--------~~~~~-~~~~~~  552 (660)
                      |.+...  ....+..++.+     .....+.++|||++++++  .+.++.|+|++.-...        ..+.. ....-.
T Consensus       258 D~~~~~--~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         258 DGRKEA--SSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             ECSGG----CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             cccccC--CcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence            332210  01111122333     245678999999999994  7899999998632111        01100 012344


Q ss_pred             eEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126          553 ITYATYSCDGKCIYVSCKSGHVKVFDTST  581 (660)
Q Consensus       553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~  581 (660)
                      ....+|+..|.-..+---|..|.-|++..
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccccCCCceEEEEeeccceEEEEecch
Confidence            56788988885444555799999999853

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.86  E-value=0.0089  Score=62.21  Aligned_cols=247  Identities=13%  Similarity=0.114  Sum_probs=144.6

Q ss_pred             EEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC-CeEEEEEcC---CCeEEEEeC------CCeEEEEeCCCCceeeE
Q 006126          383 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP-IATYFILLP---QDLFAFGFD------DSSILVHCPCTKKTKAK  451 (660)
Q Consensus       383 ~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~-~v~~v~~sp---~~~l~s~~~------d~~I~iwd~~~~~~~~~  451 (660)
                      +..+..++.+. ++.+.-.|..+|+.+..+..... ....+.-.|   ++.++.+..      .|.|.-+|.++|+.+-+
T Consensus       114 ~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  193 (560)
T d1kv9a2         114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (560)
T ss_dssp             EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ceeCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEee
Confidence            33455666677 89999999999999887753221 111111111   333444432      36799999999998877


Q ss_pred             eecc------------------------------CCCe-EEEEEeCCCCEEEEEeC-------------------CCcEE
Q 006126          452 LKGH------------------------------QNRI-TCLAYSLSLNVLVSSGA-------------------DAQLC  481 (660)
Q Consensus       452 ~~~~------------------------------~~~v-~~l~~sp~~~~l~s~s~-------------------dg~i~  481 (660)
                      +..-                              ...+ ..+++.+....+..+..                   ...|.
T Consensus       194 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~siv  273 (560)
T d1kv9a2         194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (560)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             eeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeE
Confidence            6421                              0111 12456676666654332                   23466


Q ss_pred             EEEcCCCeeeeceeeeeeeeccCC----CCCCeEEEEEecCCc--E-EEE-EecCcEEEEeCCCCceeeeecCCC-----
Q 006126          482 VWDAVGWKKLCSKFLHSFQTGLVP----ETTIVNHIQFHPDQI--H-LLS-IHEGQIDVYEAPTLNHTSQLVPDK-----  548 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~--~-l~~-~~d~~i~iwd~~~~~~~~~~~~~~-----  548 (660)
                      -.|+++++..-.....    .|..    ......-+.+..+++  . ++. ..+|.++++|..+++++.......     
T Consensus       274 Ald~~tG~~~W~~Q~~----~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         274 AIRPDTGKLAWHYQVT----PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             EECTTTCCEEEEEESS----TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             EecCCccceeEEEecc----ccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            7788887654322111    1110    001112222333443  2 333 478999999999998875432210     


Q ss_pred             ----------------------------C-CCCeEEEEEccCCCEEEEEecC----------------------------
Q 006126          549 ----------------------------M-DLPITYATYSCDGKCIYVSCKS----------------------------  571 (660)
Q Consensus       549 ----------------------------~-~~~v~~~~~s~dg~~l~sg~~d----------------------------  571 (660)
                                                  . ...-...+++|+...++....+                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                        0 0001145677777777654422                            


Q ss_pred             --------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCC
Q 006126          572 --------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP  643 (660)
Q Consensus       572 --------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~  643 (660)
                              |.|.-||+.+|+.+.......         ....-.++  - .+.+++.|+.||.++-+|..+|+..|....
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~---------~~~gg~l~--T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT---------HWNGGTLS--T-AGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESS---------SCCCCEEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCC---------CCCCceeE--E-CCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence                    568889999999998876421         11111222  1 467888899999999999999999998766


Q ss_pred             Cc
Q 006126          644 FT  645 (660)
Q Consensus       644 ~~  645 (660)
                      +.
T Consensus       498 ~~  499 (560)
T d1kv9a2         498 QS  499 (560)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.84  E-value=0.0081  Score=62.73  Aligned_cols=293  Identities=10%  Similarity=0.027  Sum_probs=157.8

Q ss_pred             EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECC
Q 006126          325 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE  403 (660)
Q Consensus       325 ~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~  403 (660)
                      .++.++.++.|.-+|.++++.            +|.-+................-..+.+.+..++.+. |+.+.-.|..
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~------------~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~  146 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAA  146 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred             EEEEECCCCeEEEEeCCCCCe------------EEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccc
Confidence            355566677777777777764            554221110000000000111122344455566666 8999999999


Q ss_pred             CCeEEEEEcCC--CC-Ce--EEEEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeeccC----------------
Q 006126          404 TFQTLATFANP--PP-IA--TYFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ----------------  456 (660)
Q Consensus       404 ~~~~~~~~~~~--~~-~v--~~v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~----------------  456 (660)
                      +|+.+......  .. .+  +..-.-.++.+++++.      .|.|+-+|.++|+.+-.+....                
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  226 (573)
T d1kb0a2         147 TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA  226 (573)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             cccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccc
Confidence            99988766432  11 11  1100111334555442      4689999999999887653210                


Q ss_pred             ---------------CCe-EEEEEeCCCCEEEEEeCC-------------------CcEEEEEcCCCeeeeceeeeeeee
Q 006126          457 ---------------NRI-TCLAYSLSLNVLVSSGAD-------------------AQLCVWDAVGWKKLCSKFLHSFQT  501 (660)
Q Consensus       457 ---------------~~v-~~l~~sp~~~~l~s~s~d-------------------g~i~vwd~~~~~~~~~~~~~~~~~  501 (660)
                                     ..+ ...++.++...++.+...                   ..|.-.|.++++..-.....    
T Consensus       227 ~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~----  302 (573)
T d1kb0a2         227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET----  302 (573)
T ss_dssp             TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS----
T ss_pred             cccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeeccccc----
Confidence                           111 124556655555543211                   24566677776543221110    


Q ss_pred             ccC----CCCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCC-------------------------
Q 006126          502 GLV----PETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK-------------------------  548 (660)
Q Consensus       502 ~~~----~~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-------------------------  548 (660)
                      .|.    .............++.   .++. ..+|.++++|..+|+.+.......                         
T Consensus       303 ~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (573)
T d1kb0a2         303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP  382 (573)
T ss_dssp             TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred             CcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccc
Confidence            110    0001222223333342   2333 478999999999998765432110                         


Q ss_pred             -------C-CCCeEEEEEccCCCEEEEEecC-------------------------------------------CeEEEE
Q 006126          549 -------M-DLPITYATYSCDGKCIYVSCKS-------------------------------------------GHVKVF  577 (660)
Q Consensus       549 -------~-~~~v~~~~~s~dg~~l~sg~~d-------------------------------------------g~I~iw  577 (660)
                             + ...-..++++|+...++....+                                           |.|.-|
T Consensus       383 ~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~Ai  462 (573)
T d1kb0a2         383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW  462 (573)
T ss_dssp             EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred             eEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEe
Confidence                   0 0011134677777766653322                                           357778


Q ss_pred             ECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126          578 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT  645 (660)
Q Consensus       578 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~  645 (660)
                      |+.+|+.+.......         +...-.++-   .+.++++|+.||.++.+|..+|+..|+...+.
T Consensus       463 D~~tGk~~W~~~~~~---------p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         463 DPVAQKAAWSVEHVS---------PWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             ETTTTEEEEEEEESS---------SCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCCceEeeecCCC---------CCCCceEEE---cCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            999999888776421         111112321   56788889999999999999999999865553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.83  E-value=0.0025  Score=66.93  Aligned_cols=243  Identities=12%  Similarity=0.069  Sum_probs=140.9

Q ss_pred             CEEEEEe-CCcEEEEECCCCeEEEEEcCCC----CCeEEEEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeecc
Q 006126          387 SHLFSAS-GGKISIFSLETFQTLATFANPP----PIATYFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGH  455 (660)
Q Consensus       387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~----~~v~~v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~  455 (660)
                      .+++.++ |+.|.-.|.++|+.+..+....    ..++.--.--++.+++|..      .|.|+-+|+++|+.+-++...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            3677777 9999999999999998875321    1111100111335555543      489999999999998765321


Q ss_pred             C-------------------------------------CCe-EEEEEeCCCCEEEEEeCC----------------CcEE
Q 006126          456 Q-------------------------------------NRI-TCLAYSLSLNVLVSSGAD----------------AQLC  481 (660)
Q Consensus       456 ~-------------------------------------~~v-~~l~~sp~~~~l~s~s~d----------------g~i~  481 (660)
                      .                                     ..+ ..+++.+....+..+..+                ..|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            0                                     111 234566666666665432                3477


Q ss_pred             EEEcCCCeeeeceeeeeeeeccCC----CCCCeEEEE-EecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCCC---
Q 006126          482 VWDAVGWKKLCSKFLHSFQTGLVP----ETTIVNHIQ-FHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---  549 (660)
Q Consensus       482 vwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~-~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~---  549 (660)
                      -.|+++|+..-.....    .|..    ......-+. ...+|+   .++. ..+|.++++|..+|+++........   
T Consensus       282 AlD~~TG~~~W~~Q~~----~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~  357 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKT----PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (596)
T ss_dssp             EEETTTCCEEEEEESS----TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccccce----eccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccc
Confidence            7888888754322211    1110    001111122 123443   3333 3778999999999987743221100   


Q ss_pred             ---------------------C-------------CCeEEEEEccCCCEEEEEecC------------------------
Q 006126          550 ---------------------D-------------LPITYATYSCDGKCIYVSCKS------------------------  571 (660)
Q Consensus       550 ---------------------~-------------~~v~~~~~s~dg~~l~sg~~d------------------------  571 (660)
                                           .             ..-...+++|+..+++....+                        
T Consensus       358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (596)
T d1w6sa_         358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (596)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccc
Confidence                                 0             000124566666665543211                        


Q ss_pred             ---------------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126          572 ---------------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE  636 (660)
Q Consensus       572 ---------------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~  636 (660)
                                     |.|.-||+.+|+.+......         .+.+.-.++  - .+.+++.|+.||.++-+|..+|+
T Consensus       438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~---------~~~~gg~ls--T-agglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---------FAVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---------SCCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccCcccCcccCCCcceEEEEeCCCCceecccCCC---------CCCccceeE--e-cCCEEEEECCCCeEEEEECCCCc
Confidence                           46788888899888765432         111100122  1 46788889999999999999999


Q ss_pred             eeccCCCCc
Q 006126          637 VEWGKLPFT  645 (660)
Q Consensus       637 ~~w~~~~~~  645 (660)
                      ..|+...+.
T Consensus       506 ~LW~~~~~~  514 (596)
T d1w6sa_         506 LLWKFKIPS  514 (596)
T ss_dssp             EEEEEECSS
T ss_pred             EeeEEECCC
Confidence            999876664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.71  E-value=0.0047  Score=64.84  Aligned_cols=245  Identities=12%  Similarity=0.134  Sum_probs=141.8

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEEEe-------CC
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GG  395 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-------dg  395 (660)
                      ..++.++.|+.+.--|.++++.            +|+...+....       ...++ ...+.++.++.+.       .|
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~------------~w~~~~~d~~~-------~~~~t~~P~v~~~~vivg~~~~e~~~~G  182 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGET------------VWKVENSDIKV-------GSTLTIAPYVVKDKVIIGSSGAELGVRG  182 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGG-------TCBCCSCCEEETTEEEECCBCGGGTCCC
T ss_pred             eEEEEEeCCCCeEeeccccCce------------ecccccccccc-------ccccccCCcEECCeEEEeeccccccccC
Confidence            4678888888888778777764            45432221100       00111 1112255555554       27


Q ss_pred             cEEEEECCCCeEEEEEcCCC-------------------------------------CCe-EEEEEcCCC-eEEEEeC--
Q 006126          396 KISIFSLETFQTLATFANPP-------------------------------------PIA-TYFILLPQD-LFAFGFD--  434 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~-------------------------------------~~v-~~v~~sp~~-~l~s~~~--  434 (660)
                      .|+-+|+.+|+.+.++....                                     ..+ ..+++.+.. .++.+..  
T Consensus       183 ~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~  262 (596)
T d1w6sa_         183 YLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNP  262 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCC
T ss_pred             ceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccc
Confidence            89999999999998764211                                     111 234555555 4444432  


Q ss_pred             --------------CCeEEEEeCCCCceeeEeeccCC---------CeEEEEE-eCCCC---EEEEEeCCCcEEEEEcCC
Q 006126          435 --------------DSSILVHCPCTKKTKAKLKGHQN---------RITCLAY-SLSLN---VLVSSGADAQLCVWDAVG  487 (660)
Q Consensus       435 --------------d~~I~iwd~~~~~~~~~~~~~~~---------~v~~l~~-sp~~~---~l~s~s~dg~i~vwd~~~  487 (660)
                                    ...|.-.|+++|+.+-.++....         ....+.. ..+|+   .++..+.+|.+.++|..+
T Consensus       263 ~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~t  342 (596)
T d1w6sa_         263 APWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTD  342 (596)
T ss_dssp             SCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCC
Confidence                          23588889999998876654211         1111221 23443   577788999999999999


Q ss_pred             Ceeeeceeeee---eeecc-----------------C-------CC---CCCeEEEEEecCCcEEEEE-e----------
Q 006126          488 WKKLCSKFLHS---FQTGL-----------------V-------PE---TTIVNHIQFHPDQIHLLSI-H----------  526 (660)
Q Consensus       488 ~~~~~~~~~~~---~~~~~-----------------~-------~~---~~~v~~~~~sp~~~~l~~~-~----------  526 (660)
                      |+.+.......   ...+.                 .       +.   ...-..++++|+..++++. .          
T Consensus       343 G~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~  422 (596)
T d1w6sa_         343 GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM  422 (596)
T ss_dssp             CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred             CceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccc
Confidence            98764322110   00000                 0       00   0001134566655554431 1          


Q ss_pred             -----------------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126          527 -----------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF  577 (660)
Q Consensus       527 -----------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw  577 (660)
                                                   -|.|.-||+.+++.+-....   ..++.+-.++..|.+++.|+.||.++-+
T Consensus       423 ~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~  499 (596)
T d1w6sa_         423 LPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKAR  499 (596)
T ss_dssp             CCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             ccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEE
Confidence                                         14577788888887655432   2333333344567888899999999999


Q ss_pred             ECCCCeeEEEeec
Q 006126          578 DTSTLELRCQINL  590 (660)
Q Consensus       578 d~~~~~~~~~~~~  590 (660)
                      |.++|+.+..+..
T Consensus       500 Da~TGe~LW~~~~  512 (596)
T d1w6sa_         500 DSDTGDLLWKFKI  512 (596)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEeeEEEC
Confidence            9999999999875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.67  E-value=0.0092  Score=62.20  Aligned_cols=266  Identities=10%  Similarity=0.030  Sum_probs=149.7

Q ss_pred             CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE-EEEeCCEEEEEe-------CC
Q 006126          324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-------GG  395 (660)
Q Consensus       324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~l~s~~-------dg  395 (660)
                      ..++.++.||.+.--|.++++.            +|+.......       ....++. -.+.++.++.+.       +|
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~------------~w~~~~~~~~-------~~~~~t~~p~v~~~~vivg~~~~~~~~~G  176 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPK-------VGSTLTQAPFVAKDTVLMGCSGAELGVRG  176 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEEECBCGGGTCCC
T ss_pred             CeEEEEeCCCcEEeeehhhhhh------------hccccccccc-------cccceeecCeEeCCeEEEeeccccccccC
Confidence            3567778888887777777764            4432111000       0001110 011244444443       46


Q ss_pred             cEEEEECCCCeEEEEEcCCC-------------------------------------CCe-EEEEEcCCC-eEEEEeC--
Q 006126          396 KISIFSLETFQTLATFANPP-------------------------------------PIA-TYFILLPQD-LFAFGFD--  434 (660)
Q Consensus       396 ~I~iwd~~~~~~~~~~~~~~-------------------------------------~~v-~~v~~sp~~-~l~s~~~--  434 (660)
                      .|.-+|+.+|+.+..+....                                     ..+ ...++.+.. .++.+..  
T Consensus       177 ~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~  256 (571)
T d2ad6a1         177 AVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNP  256 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCC
T ss_pred             cEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccc
Confidence            89999999999988764221                                     111 224555665 5544443  


Q ss_pred             --------------CCeEEEEeCCCCceeeEeeccCCCe---------EEEEEeCCCC---EEEEEeCCCcEEEEEcCCC
Q 006126          435 --------------DSSILVHCPCTKKTKAKLKGHQNRI---------TCLAYSLSLN---VLVSSGADAQLCVWDAVGW  488 (660)
Q Consensus       435 --------------d~~I~iwd~~~~~~~~~~~~~~~~v---------~~l~~sp~~~---~l~s~s~dg~i~vwd~~~~  488 (660)
                                    ...+.-.|+++|+.+-.++.....+         .......+++   .++.++.+|.+.++|..+|
T Consensus       257 ~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG  336 (571)
T d2ad6a1         257 APWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG  336 (571)
T ss_dssp             SCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCC
Confidence                          2468888999999887776432221         1222333443   4677889999999999998


Q ss_pred             eeeeceeeee-------------------------------eeeccCCCCCCeEEEEEecCCcEEEE-Eec---------
Q 006126          489 KKLCSKFLHS-------------------------------FQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------  527 (660)
Q Consensus       489 ~~~~~~~~~~-------------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---------  527 (660)
                      +.+.......                               +..+... ...-...+++|+...+++ ..+         
T Consensus       337 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~G-g~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~  415 (571)
T d2ad6a1         337 NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMG-FHNQGVDSYDPESRTLYAGLNHICMDWEPFM  415 (571)
T ss_dssp             CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTC-SSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred             cEeeeeccCCcccccccccccccccccCcccccccccCceEEEecccc-ccccccceECCCCceEEEecccccccccccc
Confidence            7653211100                               0000000 000013567777666654 221         


Q ss_pred             ----------------------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126          528 ----------------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT  579 (660)
Q Consensus       528 ----------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~  579 (660)
                                                  |.|.-+|+.+++.+-+...   ..+..+-.++..+.++++|+.||.++-+|.
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~---~~~~~~g~l~TagglVf~G~~dg~l~A~Da  492 (571)
T d2ad6a1         416 LPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             CCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCC---CCCCCcceeEecCCEEEEECCCCeEEEEEC
Confidence                                        3577788888887655543   222222223335778889999999999999


Q ss_pred             CCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEe
Q 006126          580 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL  622 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s  622 (660)
                      ++|+.+..+...         ..+...-+.|.. ||+ |+++..
T Consensus       493 ~tGe~lW~~~l~---------~~~~a~P~ty~~-dGkqYi~v~~  526 (571)
T d2ad6a1         493 KDGKELWNFKMP---------SGGIGSPMTYSF-KGKQYIGSMY  526 (571)
T ss_dssp             TTCCEEEEEECS---------SCCCSCCEEEEE-TTEEEEEEEE
T ss_pred             CCCcEEEEEECC---------CCceecceEEEE-CCEEEEEEEe
Confidence            999999998753         122222466666 665 554443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.62  E-value=0.016  Score=56.71  Aligned_cols=235  Identities=9%  Similarity=-0.052  Sum_probs=117.3

Q ss_pred             eEEEEEe--CCEEEEEe-C-CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCC------CeEEEEeCCCC
Q 006126          379 ISCFALR--GSHLFSAS-G-GKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDD------SSILVHCPCTK  446 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~-d-g~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~l~s~~~d------~~I~iwd~~~~  446 (660)
                      ....++.  +.+++.|+ + ..+.+||..+......-.. ....-.+++..+|| .++.|+.+      ..+.+||+.+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            3344555  77777776 3 6899999988765432211 12223466778888 77777643      36899998876


Q ss_pred             ceeeEe--e-------ccC-----CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE
Q 006126          447 KTKAKL--K-------GHQ-----NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH  512 (660)
Q Consensus       447 ~~~~~~--~-------~~~-----~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  512 (660)
                      +-...-  .       .+.     ..-..+...++|+.++.+..++.+.++|..+...............+.. ...-.+
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  236 (387)
T d1k3ia3         158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD-AMCGNA  236 (387)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC-CBTCEE
T ss_pred             ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcc-cccccE
Confidence            432110  0       000     0011122345677777777777777888777543211111100000100 011122


Q ss_pred             EEE-ecCCcEEEEE-e-c-------CcEEEEeCCCC---ceeeeecC-CCCCCCeEEEEEccCCCEEEEEecC-------
Q 006126          513 IQF-HPDQIHLLSI-H-E-------GQIDVYEAPTL---NHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKS-------  571 (660)
Q Consensus       513 ~~~-sp~~~~l~~~-~-d-------~~i~iwd~~~~---~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~d-------  571 (660)
                      +.+ ..+++.++.+ . +       ....+.++...   ........ ......-.+....+||++++.|+.+       
T Consensus       237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~  316 (387)
T d1k3ia3         237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  316 (387)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence            333 2356666663 2 1       12334443321   11111111 0112222345666899999998853       


Q ss_pred             ----CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126          572 ----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT  623 (660)
Q Consensus       572 ----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~  623 (660)
                          ..+.+||..+.+-.. +........+|     .  .....| ||++++.|+.
T Consensus       317 ~~~~~~ve~Ydp~~~~W~~-~~~~~~~R~~H-----s--~a~l~~-dG~v~v~GG~  363 (387)
T d1k3ia3         317 STPVFTPEIYVPEQDTFYK-QNPNSIVRVYH-----S--ISLLLP-DGRVFNGGGG  363 (387)
T ss_dssp             CSBCCCCEEEEGGGTEEEE-CCCCSSCCCTT-----E--EEEECT-TSCEEEEECC
T ss_pred             CcEeceEEEEECCCCeEEE-CCCCCCcccce-----E--EEEECC-CCEEEEEeCC
Confidence                147889988775322 22111111112     1  233457 8999999884

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.60  E-value=0.0065  Score=63.26  Aligned_cols=194  Identities=15%  Similarity=0.125  Sum_probs=119.4

Q ss_pred             CcEEEEECCCCeEEEEEcCCC------------------------------CCe-EEEEEcCCC-eEEEEeC--------
Q 006126          395 GKISIFSLETFQTLATFANPP------------------------------PIA-TYFILLPQD-LFAFGFD--------  434 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~------------------------------~~v-~~v~~sp~~-~l~s~~~--------  434 (660)
                      |.|.-+|..+|+.+..+..-.                              ..+ ..+++.+.. .++.+..        
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~  257 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence            679999999999998875210                              111 124556665 4443221        


Q ss_pred             -----------CCeEEEEeCCCCceeeEeeccCCCeE---------EEEEeCCCC---EEEEEeCCCcEEEEEcCCCeee
Q 006126          435 -----------DSSILVHCPCTKKTKAKLKGHQNRIT---------CLAYSLSLN---VLVSSGADAQLCVWDAVGWKKL  491 (660)
Q Consensus       435 -----------d~~I~iwd~~~~~~~~~~~~~~~~v~---------~l~~sp~~~---~l~s~s~dg~i~vwd~~~~~~~  491 (660)
                                 ...|.-.|+++|+..-.++.....+.         -+....+++   .++.++.+|.+.++|..+++.+
T Consensus       258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                       23677889999988766654322221         122223443   5677888999999999998865


Q ss_pred             eceeeeee--ee-------------------------ccCCCCCCeEEEEEecCCcEEEE-Eec----------------
Q 006126          492 CSKFLHSF--QT-------------------------GLVPETTIVNHIQFHPDQIHLLS-IHE----------------  527 (660)
Q Consensus       492 ~~~~~~~~--~~-------------------------~~~~~~~~v~~~~~sp~~~~l~~-~~d----------------  527 (660)
                      ........  ..                         ........-...+++|+...+++ ..+                
T Consensus       338 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~  417 (560)
T d1kv9a2         338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK  417 (560)
T ss_dssp             EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred             ccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccc
Confidence            43221100  00                         00000001124567777777665 322                


Q ss_pred             --------------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126          528 --------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ  587 (660)
Q Consensus       528 --------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~  587 (660)
                                          |.|.-||+.+++.+-.+...   .+..+-.++-.|.++++|+.||.++-+|.++|+.+..
T Consensus       418 ~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~---~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         418 AFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             SCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC---CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence                                45778899888887666442   2233333445678888999999999999999999999


Q ss_pred             eecc
Q 006126          588 INLT  591 (660)
Q Consensus       588 ~~~~  591 (660)
                      +...
T Consensus       495 ~~l~  498 (560)
T d1kv9a2         495 FEAQ  498 (560)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            8753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.03  Score=51.66  Aligned_cols=228  Identities=13%  Similarity=0.054  Sum_probs=140.4

Q ss_pred             CEEEEEeCCcEEEEECCCCeE-----EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126          387 SHLFSASGGKISIFSLETFQT-----LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI  459 (660)
Q Consensus       387 ~~l~s~~dg~I~iwd~~~~~~-----~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v  459 (660)
                      .+|+.+..+.|+-.+++....     ...+..+...+..++|.+.+  .+.+-..++.|+..++..+.....+......+
T Consensus         2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence            456666666777777654321     11222333456778898776  44455567789999987665544444444678


Q ss_pred             EEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecC--cEEEEe
Q 006126          460 TCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYE  534 (660)
Q Consensus       460 ~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~--~i~iwd  534 (660)
                      .++++..-+..|..+ ...+.|.+.++.....   ..   +.....   ..+..++++|...+++.+  ..+  .|..-+
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~---~~---l~~~~l---~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RV---LFDTGL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECSSC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceE---EE---Eecccc---cCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            899998766666544 4567899999876321   11   122222   368899999988777764  222  355556


Q ss_pred             CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126          535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL  613 (660)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~  613 (660)
                      +. |.....+... .-.....+++++.++.|+.. ...+.|...++........+.       |- ..   ..++++.  
T Consensus       153 ~d-G~~~~~i~~~-~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-------~~-~~---P~~lav~--  217 (263)
T d1npea_         153 MD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-------GL-QY---PFAVTSY--  217 (263)
T ss_dssp             TT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-------CC-CS---EEEEEEE--
T ss_pred             CC-CCCceeeeee-cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-------CC-CC---cEEEEEE--
Confidence            64 3333333321 24567899999888877665 456889999998665544433       11 12   2356664  


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcee
Q 006126          614 EPNRIALGLTNGRVHVIEPLESEVE  638 (660)
Q Consensus       614 d~~~l~s~s~Dg~v~iw~~~~~~~~  638 (660)
                      ++.+..+-...+.|...+..+++..
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCccc
Confidence            3445555556788999999888754

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=1.9e-05  Score=56.26  Aligned_cols=61  Identities=11%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             cccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc--HHHHHHHHhcCchHhHHHhhhhh
Q 006126           60 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--INYFREYITSGEWDNAEKYLSAF  120 (660)
Q Consensus        60 ~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~--~~~l~~~i~~G~w~~~~~~l~~~  120 (660)
                      +.+.+++|+.+-|++||..+||.+++.+|++|+++.++  ...-.+.+++-.|..++.+-+.+
T Consensus         2 Lt~rQ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI   64 (76)
T d1uuja_           2 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   64 (76)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHH
Confidence            34678999999999999999999999999999998875  44445567778898888876654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=0.035  Score=57.84  Aligned_cols=81  Identities=11%  Similarity=0.170  Sum_probs=55.2

Q ss_pred             CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126          528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV  607 (660)
Q Consensus       528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~  607 (660)
                      |.|.-+|+.+|+.+-....   ..++..-.++..|..+++|+.||.++-+|.++|+.+..+....         .+...-
T Consensus       466 G~l~AiD~~TG~i~W~~~~---~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~---------~~~~~P  533 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKE---HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS---------GIVSPP  533 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE---SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS---------CCCSCC
T ss_pred             CeEEEEcCCCCcEEeecCC---CCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC---------CccccC
Confidence            4677788888887766643   2333333344678888899999999999999999999988531         122223


Q ss_pred             EEEecCCCC-EEEEE
Q 006126          608 IAAHPLEPN-RIALG  621 (660)
Q Consensus       608 v~~sp~d~~-~l~s~  621 (660)
                      +.|.. +|+ |++..
T Consensus       534 ~ty~~-~G~qYv~i~  547 (582)
T d1flga_         534 ITWEQ-DGEQYLGVT  547 (582)
T ss_dssp             EEEEE-TTEEEEEEE
T ss_pred             EEEEE-CCEEEEEEE
Confidence            66666 675 45443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.49  E-value=0.024  Score=55.38  Aligned_cols=273  Identities=8%  Similarity=-0.012  Sum_probs=136.0

Q ss_pred             EecCCCCEEEEEeCCC-----------cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC-CcEE
Q 006126          269 TSLPDADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHK  336 (660)
Q Consensus       269 ~~spdg~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d-g~i~  336 (660)
                      ....+|+.++.|+.+.           .+.+||..+.    ...........|.......++.++|+.++.|+.+ ..+.
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~----~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG----IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC----CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCC----cEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            5567899999888531           2678999853    2221111011133334567889999998888765 5788


Q ss_pred             EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-C------CcEEEEECCCCeEE
Q 006126          337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-G------GKISIFSLETFQTL  408 (660)
Q Consensus       337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-d------g~I~iwd~~~~~~~  408 (660)
                      +||..+..-              ..... +.      ........+... +..++.++ +      ..+.+||..+.+-.
T Consensus       102 ~yd~~~~~w--------------~~~~~-~~------~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         102 LYDSSSDSW--------------IPGPD-MQ------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEEGGGTEE--------------EECCC-CS------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EecCccCcc--------------ccccc-cc------ccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence            888766532              21100 00      111222333333 77777776 2      36899999887543


Q ss_pred             EEEcC---------CC-----CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee--c----cCC--CeEEEEEe
Q 006126          409 ATFAN---------PP-----PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--G----HQN--RITCLAYS  465 (660)
Q Consensus       409 ~~~~~---------~~-----~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~--~----~~~--~v~~l~~s  465 (660)
                      ..-..         +.     ..-..+...++| .++.++.++.+.++|..+......-.  .    +..  .-.++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (387)
T d1k3ia3         161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD  240 (387)
T ss_dssp             EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred             ecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEee
Confidence            21110         00     000112233455 66666667777778877654332211  0    111  11223232


Q ss_pred             -CCCCEEEEEeCCC--------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec--------
Q 006126          466 -LSLNVLVSSGADA--------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------  527 (660)
Q Consensus       466 -p~~~~l~s~s~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d--------  527 (660)
                       .+++.++.|+...        ...+.+........ ...........+  ..-.+....+||+.+++ |.+        
T Consensus       241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~--r~~~~~~~~~dg~i~v~GG~~~~~~~~~~  317 (387)
T d1k3ia3         241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-NTVFASNGLYFA--RTFHTSVVLPDGSTFITGGQRRGIPFEDS  317 (387)
T ss_dssp             TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-EEEECTTCCSSC--CBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             ccCCceEEEEeccCCCCCcccceeecccccccccCC-Cceeeccccccc--cccceeeeccCCeEEEECCcccCccCCCC
Confidence             3566677665321        23333333211100 000000000010  12335667789998887 432        


Q ss_pred             ---CcEEEEeCCCCceeeeecCCCCCCCeE-EEEEccCCCEEEEEec
Q 006126          528 ---GQIDVYEAPTLNHTSQLVPDKMDLPIT-YATYSCDGKCIYVSCK  570 (660)
Q Consensus       528 ---~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~sg~~  570 (660)
                         .++.+||..+.+-.. +........-. ...+.+||+.++.|+.
T Consensus       318 ~~~~~ve~Ydp~~~~W~~-~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         318 TPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cEeceEEEEECCCCeEEE-CCCCCCcccceEEEEECCCCEEEEEeCC
Confidence               147899987665322 11111111112 2345799999999884

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.49  E-value=0.0077  Score=58.57  Aligned_cols=194  Identities=16%  Similarity=0.081  Sum_probs=115.7

Q ss_pred             CC-e-EEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeC--CCCEEEEEeCCC------------------cEEE
Q 006126          426 QD-L-FAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSL--SLNVLVSSGADA------------------QLCV  482 (660)
Q Consensus       426 ~~-~-l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp--~~~~l~s~s~dg------------------~i~v  482 (660)
                      || + ++....+..|.+.|+++.++.+.... ....+..+...+  +-.+++.++.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            67 4 44555778999999999987665433 345566666644  455777766532                  3667


Q ss_pred             EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec----------------------------------
Q 006126          483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE----------------------------------  527 (660)
Q Consensus       483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d----------------------------------  527 (660)
                      +|..+.+......+.          +....+.++++|+++++ +.+                                  
T Consensus       178 ID~~tm~V~~QV~V~----------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS----------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             EETTTTEEEEEEEES----------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             EecCCceEEEEeeeC----------CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence            888885543322222          34668999999999988 522                                  


Q ss_pred             ----CcEEEEeCCCC---ceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEE--EeecccccCCC
Q 006126          528 ----GQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRC--QINLTAYAQPG  597 (660)
Q Consensus       528 ----~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~--~~~~~~~~~~g  597 (660)
                          +.+.+.|.++.   ..+..+..   ......+.++|||+++++++. +.++.|+|++.-....  .+.+.. ...+
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~-~~~~  323 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS-AVVA  323 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG-GEEE
T ss_pred             cEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc-cEEe
Confidence                12333443321   11112221   234557899999999887665 7899999986421100  000000 0000


Q ss_pred             CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126          598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE  634 (660)
Q Consensus       598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~  634 (660)
                      ...-..-.+..+|.. .|+-..|.--|..|.-|++..
T Consensus       324 e~elglgPLht~fd~-~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         324 EPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred             ecccCcCccccccCC-CceEEEEeeccceEEEEecch
Confidence            001112355788988 786666667899999999853

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=0.038  Score=50.74  Aligned_cols=221  Identities=12%  Similarity=0.140  Sum_probs=136.1

Q ss_pred             CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCC-ceeeEeeccC----CCeE
Q 006126          386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQ----NRIT  460 (660)
Q Consensus       386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~----~~v~  460 (660)
                      .+.||.-+..++.++|+++.+.++.+.-.. .|.-=.|-.+..|+..+ +..|+-|+++.. .+.+.+..|.    ..|-
T Consensus        74 ~~IiALrag~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QII  151 (327)
T d1utca2          74 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII  151 (327)
T ss_dssp             SSEEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred             CcEEEEecCCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEE
Confidence            445555557799999999999998887555 44445666665333332 557999999542 4666666554    4566


Q ss_pred             EEEEeCCCCEEEEEe---C----CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe--cCCcEEEE-E----e
Q 006126          461 CLAYSLSLNVLVSSG---A----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-I----H  526 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s---~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~-~----~  526 (660)
                      .-..++++++++..+   .    .|.+.+|..+...       ....+||.   +....+.+.  ++...+++ +    .
T Consensus       152 nY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-------sQ~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         152 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-------SQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-------EEEECCSE---EEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             EEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-------Ccccccee---eeeEEEEcCCCCCCceEEEEEECCCC
Confidence            777788999877543   2    3678888887622       22556764   222222222  12223333 3    2


Q ss_pred             cCcEEEEeCCCCc---e------eee-ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC
Q 006126          527 EGQIDVYEAPTLN---H------TSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP  596 (660)
Q Consensus       527 d~~i~iwd~~~~~---~------~~~-~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~  596 (660)
                      .+.+++.++....   .      +.. +.+........++..|+.-..++.-+.-|.|++||+.++.++..-...     
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs-----  296 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS-----  296 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC-----
Confidence            3679999886421   1      111 112222455668889998899999999999999999999988765432     


Q ss_pred             CCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126          597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHV  629 (660)
Q Consensus       597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i  629 (660)
                         ...+.+  .+-+. +..=+++...+|.|.-
T Consensus       297 ---~~~iF~--~a~~~-~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         297 ---GETIFV--TAPHE-ATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             ---SSCEEE--EEEET-TTTEEEEEETTSEEEE
T ss_pred             ---CCceEE--eccCC-CCceEEEECCCCeEEE
Confidence               344442  22333 3334555557776643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.054  Score=49.81  Aligned_cols=199  Identities=11%  Similarity=-0.035  Sum_probs=127.3

Q ss_pred             CCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceee
Q 006126          377 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKA  450 (660)
Q Consensus       377 ~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~  450 (660)
                      ..+..++|.  .+.|.-..  ++.|...++..+.....+......+.++++..-+ .| ++-...+.|.+.++.......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            346678887  66666665  5789888887665554454444567889998756 44 455567799999987654433


Q ss_pred             EeeccCCCeEEEEEeCCCCEEEEEeCC-C--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--
Q 006126          451 KLKGHQNRITCLAYSLSLNVLVSSGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--  525 (660)
Q Consensus       451 ~~~~~~~~v~~l~~sp~~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--  525 (660)
                      .+.........++++|...++...... +  .|.--++.....     .. +.....   .....+++.+.+..|+.+  
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-----~~-i~~~~~---~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-----RI-LAQDNL---GLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-----EE-EECTTC---SCEEEEEEETTTTEEEEEET
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-----ee-eeeecc---cccceEEEeecCcEEEEEeC
Confidence            333344678999999977777655432 2  344445544211     11 111111   357789999888877664  


Q ss_pred             ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEee
Q 006126          526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~  589 (660)
                      ..+.|...|+........+.+   .....++++.  +.+|+... ..+.|...|..+++....+.
T Consensus       187 ~~~~I~~~~~~g~~~~~v~~~---~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         187 GTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEECCCCCeEEEECC---CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            567899999954443333322   2334577775  45565544 56889999999998777664

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.32  E-value=0.023  Score=59.17  Aligned_cols=150  Identities=14%  Similarity=0.144  Sum_probs=90.3

Q ss_pred             eEEEEeCCCCceeeEeeccCC---------CeEEEEEeCCC---CEEEEEeCCCcEEEEEcCCCeeeeceeeee------
Q 006126          437 SILVHCPCTKKTKAKLKGHQN---------RITCLAYSLSL---NVLVSSGADAQLCVWDAVGWKKLCSKFLHS------  498 (660)
Q Consensus       437 ~I~iwd~~~~~~~~~~~~~~~---------~v~~l~~sp~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------  498 (660)
                      .|.-.|+++|+..-.++....         .........++   ..++.++.+|.+.++|..+|+.+.......      
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            577788888887765543221         11222223333   356778889999999999988654222110      


Q ss_pred             ---------------------eeec-cCCCCCCeEEEEEecCCcEEEE-Eec----------------------------
Q 006126          499 ---------------------FQTG-LVPETTIVNHIQFHPDQIHLLS-IHE----------------------------  527 (660)
Q Consensus       499 ---------------------~~~~-~~~~~~~v~~~~~sp~~~~l~~-~~d----------------------------  527 (660)
                                           ...+ +..  ..-..++++|+...+++ ..+                            
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg--~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  441 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGA--HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCS--SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccccceeeeeeccccccceEEeecccCC--ccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccc
Confidence                                 0000 000  01123567787766665 232                            


Q ss_pred             ---------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecc
Q 006126          528 ---------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT  591 (660)
Q Consensus       528 ---------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~  591 (660)
                                     |.+.-||+.+++.+-++..   ..+...-..+-.|.+|++|+.||.++.||.++|+.+.++...
T Consensus       442 ~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~---~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cccccccCCCCCCCcccEEEeCCCCCceEeeecC---CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence                           2466677777776655533   222222233446888999999999999999999999998753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=0.13  Score=53.24  Aligned_cols=63  Identities=14%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCcc
Q 006126          572 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTD  646 (660)
Q Consensus       572 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~  646 (660)
                      |.|.-+|+.+|+.+.......         +...-.++  . .+.++++|+.||.++-+|..+|+..|....+..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~---------p~~~g~ls--t-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~  528 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL---------PLWAGVLA--T-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---------CCCSCCEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CeEEEEcCCCCcEEeecCCCC---------CCccceeE--E-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC
Confidence            568889999999888876421         11110122  2 567888899999999999999999998766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.074  Score=48.98  Aligned_cols=228  Identities=10%  Similarity=-0.042  Sum_probs=137.0

Q ss_pred             EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCeEEEEeCCCCc----eeeEeeccCCCeEE
Q 006126          388 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKK----TKAKLKGHQNRITC  461 (660)
Q Consensus       388 ~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~~I~iwd~~~~~----~~~~~~~~~~~v~~  461 (660)
                      +|+.+....|+..++.+......+ .....+..++|++.. .++ +-...+.|...++....    ....+......+.+
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECCCeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            455555566888898865544433 344567789999877 444 44466677777765321    11222333355778


Q ss_pred             EEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCC
Q 006126          462 LAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPT  537 (660)
Q Consensus       462 l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~  537 (660)
                      +++.+.+..|..+ ...+.|.+.++......     . ......   .....++++|...+|..+   ..+.|...++. 
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~-----~-~~~~~~---~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-  151 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-----T-LFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-  151 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEE-----E-EEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEE-----E-EEcCCC---CCcceEEEEcccCeEEEeccCCCcceeEeccC-
Confidence            9998866666555 45678999998863211     1 122222   467899999976666653   34567777774 


Q ss_pred             CceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126          538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN  616 (660)
Q Consensus       538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~  616 (660)
                      |.....+... .-.....+++++.++.|+.+ ...+.|...++............        ...-...+++...  +.
T Consensus       152 Gs~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~--------~~~~~p~~lav~~--~~  220 (266)
T d1ijqa1         152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE--DK  220 (266)
T ss_dssp             SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--TE
T ss_pred             CCceeccccc-ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC--------CcccccEEEEEEC--CE
Confidence            4444444332 24567899999988877765 44688999998765443333321        1111233566543  34


Q ss_pred             EEEEEeCCCeEEEEeCCCCce
Q 006126          617 RIALGLTNGRVHVIEPLESEV  637 (660)
Q Consensus       617 ~l~s~s~Dg~v~iw~~~~~~~  637 (660)
                      +..+-..++.|.-.+..+++.
T Consensus       221 ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         221 VFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EEEEETTTTEEEEEETTTCCC
T ss_pred             EEEEECCCCeEEEEECCCCcc
Confidence            555555778888888777653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.096  Score=48.15  Aligned_cols=204  Identities=8%  Similarity=-0.062  Sum_probs=124.2

Q ss_pred             CCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC
Q 006126          375 PKDSISCFALR--GSHLFSAS--GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC  444 (660)
Q Consensus       375 h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~  444 (660)
                      ....+..++|.  .+.|.-..  .+.|...++....    ....+......+..+++.+.+  ...+-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            33456788888  66666665  4677776664321    122223333456678888766  44555567799999988


Q ss_pred             CCceeeEeeccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126          445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL  522 (660)
Q Consensus       445 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  522 (660)
                      .......+.........++++|...+|.....  .+.|.-.++.....      ..+.....   .....+++.+.+..|
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~------~~l~~~~~---~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRL  178 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEEECSSC---SCEEEEEEETTTTEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce------eccccccc---ceeeEEEeeccccEE
Confidence            66655555555677899999997666665443  34576677765221      11221111   357889999988877


Q ss_pred             EEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEee
Q 006126          523 LSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQIN  589 (660)
Q Consensus       523 ~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~  589 (660)
                      +.+  ..+.|...|+...................++++.  +.+|+.. ..++.|+..+..+++....+.
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            764  5678999998544333223222223445677766  4455544 456888888888877665554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.22  Score=45.59  Aligned_cols=253  Identities=10%  Similarity=0.039  Sum_probs=148.6

Q ss_pred             CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC
Q 006126          284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS  363 (660)
Q Consensus       284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  363 (660)
                      .++.|-|+.+.   ....+..+       .--+.-.+|..+.||.-+ ..++.++|+++...                  
T Consensus        45 ~~VvIidl~n~---~~~~Rrpi-------~AdsAIMhP~~~IiALra-g~~LQiFnletK~k------------------   95 (327)
T d1utca2          45 AQVVIIDMNDP---SNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------   95 (327)
T ss_dssp             EEEEEEETTST---TSCEEEEC-------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEE------------------
T ss_pred             ceEEEEECCCC---Ccceeccc-------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhh------------------
Confidence            46888888752   22232222       223455678888776655 45777777766544                  


Q ss_pred             CceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCC-CeEEEEEcCCC----CCeEEEEEcCCC-eEE-EE--e
Q 006126          364 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPP----PIATYFILLPQD-LFA-FG--F  433 (660)
Q Consensus       364 ~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~-~~~~~~~~~~~----~~v~~v~~sp~~-~l~-s~--~  433 (660)
                         ++..   .....|.-=.|- .+.|+...+..|+-|+++. ..+.+.+..|.    ..|-....+++. +++ +|  .
T Consensus        96 ---lks~---~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~  169 (327)
T d1utca2          96 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  169 (327)
T ss_dssp             ---EEEE---ECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred             ---hceE---EcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEec
Confidence               2211   133455555666 8899999999999999953 34666666543    456677778888 443 32  2


Q ss_pred             C----CCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC--C-CEEEEE---eCCCcEEEEEcCCCee-ee---ceeeeee
Q 006126          434 D----DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS--L-NVLVSS---GADAQLCVWDAVGWKK-LC---SKFLHSF  499 (660)
Q Consensus       434 ~----d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~-~~l~s~---s~dg~i~vwd~~~~~~-~~---~~~~~~~  499 (660)
                      .    .|.+.+|..+. +.-+.++||......+.+.-+  . ..++.+   ...+++.+.++..... ..   .+... +
T Consensus       170 ~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vd-i  247 (327)
T d1utca2         170 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-V  247 (327)
T ss_dssp             ETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEE-C
T ss_pred             CCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEE-E
Confidence            2    35788898774 456677888665544433211  1 123222   2236888998876321 11   11111 1


Q ss_pred             eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126          500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK  575 (660)
Q Consensus       500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~  575 (660)
                      +-..........++..++.-..+.. ..-|.|++||++++.++..-...  ...|...+-+.+..=+++...+|.|.
T Consensus       248 ~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs--~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         248 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC--CCceEEeccCCCCceEEEECCCCeEE
Confidence            1111100145667888887666666 78899999999999998766542  55565445444444444444666654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.11  E-value=0.6  Score=44.18  Aligned_cols=160  Identities=15%  Similarity=0.042  Sum_probs=90.2

Q ss_pred             CeEEEEEcCCC-eEEEEeC------------CCeEEEEeCCCCcee-eEe--ecc-----CCCeEEEEE--eCCCCE-EE
Q 006126          417 IATYFILLPQD-LFAFGFD------------DSSILVHCPCTKKTK-AKL--KGH-----QNRITCLAY--SLSLNV-LV  472 (660)
Q Consensus       417 ~v~~v~~sp~~-~l~s~~~------------d~~I~iwd~~~~~~~-~~~--~~~-----~~~v~~l~~--sp~~~~-l~  472 (660)
                      ..-.++..|+| .+++++.            .|.|.++|+.+.+.. ..+  .+.     .-....+.+  .++|+. |+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            34467888999 5544431            489999998765332 122  111     112344444  445653 44


Q ss_pred             EEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---e-c------------CcEEEE
Q 006126          473 SSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---H-E------------GQIDVY  533 (660)
Q Consensus       473 s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~-d------------~~i~iw  533 (660)
                      +..   ...+|.+|++...... ...+.++.....   ...+++++..++.++++-   . +            +...+|
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~-l~~~~~v~~~~~---~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLL---PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTC---SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEeccCCCceeEEEEEeCCCCe-EEEEeecCCccc---cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            443   3567888887643211 111111111222   468899999999888872   1 1            123444


Q ss_pred             eCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCe
Q 006126          534 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE  583 (660)
Q Consensus       534 d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~  583 (660)
                      ....++......   .-...+.++++||+++|+.+.. .+.|++|++....
T Consensus       192 ~~~~~~~~~~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         192 YYSPNDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EECSSCEEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEcCCceEEEcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            443333322221   1456889999999998876654 6889999987543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.76  E-value=1  Score=44.05  Aligned_cols=243  Identities=9%  Similarity=-0.015  Sum_probs=126.4

Q ss_pred             eEEEEEe--CCEEEEEe--CC----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC--------------
Q 006126          379 ISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------------  435 (660)
Q Consensus       379 v~~v~~s--~~~l~s~~--dg----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d--------------  435 (660)
                      +..++++  +++++.+-  +|    .++++|+.+++.+...-. ......++|.+|+ .|+....+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            3445556  66666443  34    699999999987653211 1112468899999 55443322              


Q ss_pred             --CeEEEEeCCCCce--eeEeecc--CCCeEEEEEeCCCCEEEEEeC---CCc--EEEEEcCCCeee--eceeeeeeeec
Q 006126          436 --SSILVHCPCTKKT--KAKLKGH--QNRITCLAYSLSLNVLVSSGA---DAQ--LCVWDAVGWKKL--CSKFLHSFQTG  502 (660)
Q Consensus       436 --~~I~iwd~~~~~~--~~~~~~~--~~~v~~l~~sp~~~~l~s~s~---dg~--i~vwd~~~~~~~--~~~~~~~~~~~  502 (660)
                        ..|..|.+.+...  ...+...  ...+..+..++++++++....   +..  +.+.|+......  ...........
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  285 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence              2588888776533  2333332  335667778999998765432   333  444455432110  00001101111


Q ss_pred             cCCCCCCeEEEEEecCCcEEEEE----ecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEe-cCC--e
Q 006126          503 LVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSG--H  573 (660)
Q Consensus       503 ~~~~~~~v~~~~~sp~~~~l~~~----~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg--~  573 (660)
                      ..   ... ....+.++.+++.+    .++.|...++.+...  ...+.. .+...+..-.++..+.+|+... .++  .
T Consensus       286 ~~---~~~-~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~-~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         286 FE---GEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             SS---SCE-EEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC-CCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             cc---cce-EEEecCCceeecccCcccccceeEEecCCCCccccceEEec-ccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            11   122 22333334444433    235677777765432  123322 2344555555555566666554 554  5


Q ss_pred             EEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe---CCCeEEEEeCCCCce
Q 006126          574 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL---TNGRVHVIEPLESEV  637 (660)
Q Consensus       574 I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s---~Dg~v~iw~~~~~~~  637 (660)
                      |++++..+++......+.        ...+  ..+...+.+..+.++.+   .-.++.-+|+.+++.
T Consensus       361 l~v~~~~~~~~~~~~~~~--------~~sv--~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         361 LQLHDLATGALLKIFPLE--------VGSV--VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEETTTCCEEEEECCC--------SSEE--EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEEECCCCcEEEecCCC--------CceE--eeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            889999988765543321        1112  24444453333444333   237899999988753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.36  E-value=1.4  Score=43.00  Aligned_cols=242  Identities=12%  Similarity=0.036  Sum_probs=121.4

Q ss_pred             CCCeEEEEEecCCCEEEEEEC-CC----cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe
Q 006126          311 GGRVVRLIYSHSGDFLVALTQ-TA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR  385 (660)
Q Consensus       311 ~~~V~~~~~spdg~~l~s~s~-dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  385 (660)
                      .-.+...++||||++++.+-. +|    .++++|+.+++.                     +...+.   ......++|.
T Consensus       124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~---------------------~~~~i~---~~~~~~~~W~  179 (430)
T d1qfma1         124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE---------------------LPDVLE---RVKFSCMAWT  179 (430)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE---------------------EEEEEE---EECSCCEEEC
T ss_pred             cceecceEecCCCCEEEEEeccccCchheeEEeccCccee---------------------cccccc---cccccceEEc
Confidence            334456778999998875432 33    456666555543                     221110   0111345666


Q ss_pred             --CCEEEEEe-C----------------CcEEEEECCCCeE--EEEEcCCC--CCeEEEEEcCCC-eEE-EEe--CCCe-
Q 006126          386 --GSHLFSAS-G----------------GKISIFSLETFQT--LATFANPP--PIATYFILLPQD-LFA-FGF--DDSS-  437 (660)
Q Consensus       386 --~~~l~s~~-d----------------g~I~iwd~~~~~~--~~~~~~~~--~~v~~v~~sp~~-~l~-s~~--~d~~-  437 (660)
                        +..|+... +                ..|..+.+.+...  ...+....  ..+..+..++++ +++ ...  .+.. 
T Consensus       180 ~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~  259 (430)
T d1qfma1         180 HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (430)
T ss_dssp             TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             CCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccE
Confidence              44444332 2                2577777766432  23333332  345667788998 443 332  2333 


Q ss_pred             -EEEEeCCCCc--------eeeEeeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCC
Q 006126          438 -ILVHCPCTKK--------TKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVP  505 (660)
Q Consensus       438 -I~iwd~~~~~--------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  505 (660)
                       +.+.|+....        .............-+ -+.++.+++....   ++.|...++.....   .....+...+. 
T Consensus       260 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~---~~w~~vi~~~~-  334 (430)
T d1qfma1         260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEE---SKWKVLVPEHE-  334 (430)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCG---GGCEEEECCCS-
T ss_pred             EEEEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCcc---ccceEEecccC-
Confidence             4444543221        111222222223322 2223334333332   35677777765432   11222222232 


Q ss_pred             CCCCeEEEEEecCCcEEEE-E-ec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC----CeEEEE
Q 006126          506 ETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVF  577 (660)
Q Consensus       506 ~~~~v~~~~~sp~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----g~I~iw  577 (660)
                        ..+..-.+...+.+|+. - .+  +.|++++..++.........  .+.+..+...++...+...-.+    .+++-|
T Consensus       335 --~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~  410 (430)
T d1qfma1         335 --KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC  410 (430)
T ss_dssp             --SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred             --cceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCC--CceEeeccCCCCCCEEEEEEcCCCCCCeEEEE
Confidence              23444445555556665 3 44  36899999887765544332  4556655555666555443333    789999


Q ss_pred             ECCCCeeE
Q 006126          578 DTSTLELR  585 (660)
Q Consensus       578 d~~~~~~~  585 (660)
                      |+.+++..
T Consensus       411 Dl~t~~~~  418 (430)
T d1qfma1         411 DLTKEELE  418 (430)
T ss_dssp             ETTSSSCC
T ss_pred             ECCCCCcc
Confidence            99988643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.09  E-value=0.67  Score=44.39  Aligned_cols=187  Identities=10%  Similarity=-0.028  Sum_probs=106.1

Q ss_pred             CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEE
Q 006126          312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS  391 (660)
Q Consensus       312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s  391 (660)
                      ....-++.++...++++|+.++ +.|-..+.-......          ......... .   ..-..|..++|+++.|+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~----------~~~~~~~~~-~---~~ip~v~~vafs~d~l~v  101 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS----------DSTPLTFKW-E---KEIPDVIFVCFHGDQVLV  101 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS----------SSCCCCCSE-E---EECTTEEEEEEETTEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc----------cCCCCccee-c---cCCCCeEEEEeeCCEEEE
Confidence            4566788898888888888775 445543221110000          000000000 0   012358889999777777


Q ss_pred             EeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec-----cCCCeEEEEEeC
Q 006126          392 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSL  466 (660)
Q Consensus       392 ~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp  466 (660)
                      ..++.+..++..+-............+..+.++|.. ++....++.+.++++..++......+     -.+.+.++.|++
T Consensus       102 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~  180 (381)
T d1xipa_         102 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD  180 (381)
T ss_dssp             EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT
T ss_pred             EeCCCEEEEEeeccccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeC
Confidence            778888888887654444444445667888888774 55566788999999988764332211     235577777887


Q ss_pred             CCCEEEEEeCCCcEEE-EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126          467 SLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS  524 (660)
Q Consensus       467 ~~~~l~s~s~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  524 (660)
                      .|+.++++..++ ..+ -++...     ..+. -.....   ..|.++.|-.+..++++
T Consensus       181 kgkq~v~~~g~~-~q~k~~i~~~-----~~~~-~p~~~~---~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         181 RSFQSFAWRNGE-MEKQFEFSLP-----SELE-ELPVEE---YSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             SCEEEEEEETTE-EEEEEEECCC-----HHHH-TSCTTT---SEEEEEEESSSSEEEEE
T ss_pred             CcEEEEEeCCCc-eeeccCCCCc-----cccC-CCcCCC---cceeEEEEecCceEEEE
Confidence            777777664321 111 111110     0000 001111   46788888877777665

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.95  E-value=0.95  Score=38.70  Aligned_cols=152  Identities=11%  Similarity=0.042  Sum_probs=81.2

Q ss_pred             CCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeE--------EEEEcCCC--eEEEEeC-CCeEEEEe
Q 006126          377 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIAT--------YFILLPQD--LFAFGFD-DSSILVHC  442 (660)
Q Consensus       377 ~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~--------~v~~sp~~--~l~s~~~-d~~I~iwd  442 (660)
                      -.|.++++. .+..++|+ .....+|-++.|+...-.. ..-+-|+        .+.+...+  -++++.- .|.+++++
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            346677777 56667777 6778888888776544322 2222232        22222222  3333333 45555555


Q ss_pred             CCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC
Q 006126          443 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ  519 (660)
Q Consensus       443 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  519 (660)
                      ..           .+.++.....+..+. +++-.   ......+|+++++.........-+....+  ..|.-+-+.|++
T Consensus       184 pk-----------eGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p--~~I~~~~Y~Pdd  249 (313)
T d2hu7a1         184 SG-----------EGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRP--TAITWLGYLPDG  249 (313)
T ss_dssp             CS-----------SEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCC--SEEEEEEECTTS
T ss_pred             CC-----------CCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecc--eEEEeeeeCCCC
Confidence            44           444555555555444 33322   12233557776543221111101111122  467778899999


Q ss_pred             cEEEEE-ecCcEEEEeCCCCceeeee
Q 006126          520 IHLLSI-HEGQIDVYEAPTLNHTSQL  544 (660)
Q Consensus       520 ~~l~~~-~d~~i~iwd~~~~~~~~~~  544 (660)
                      +.++.+ .||.-++|+  +|+.+.+-
T Consensus       250 ~L~iiakrdG~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         250 RLAVVARREGRSAVFI--DGERVEAP  273 (313)
T ss_dssp             CEEEEEEETTEEEEEE--TTEEECCC
T ss_pred             cEEEEEecCCchheee--cceEecCC
Confidence            997775 899988887  67766554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.65  E-value=1.8  Score=40.66  Aligned_cols=196  Identities=12%  Similarity=0.106  Sum_probs=109.4

Q ss_pred             cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------C--CEEEEE
Q 006126          321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------G--SHLFSA  392 (660)
Q Consensus       321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~--~~l~s~  392 (660)
                      |+...++....++-+.+||++....                      +..    ..+.+..|..-      +  .-++.+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l----------------------~~~----~~Gr~NNVDvr~~~~l~~~~~di~va   91 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKML----------------------HSY----HTGKLNNVDIRYDFPLNGKKVDIAAA   91 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEE----------------------EEC----CSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEE----------------------Eec----ccCCcCccccccccccCCcceEEEEE
Confidence            4556777777777788888754432                      111    12334443322      1  134555


Q ss_pred             e--C-C--cEEEEECCC-CeEEEEEcCC-------CCCeEEEEE--cCC-C--eEEEEeCCCeEEEEeCC---CC----c
Q 006126          393 S--G-G--KISIFSLET-FQTLATFANP-------PPIATYFIL--LPQ-D--LFAFGFDDSSILVHCPC---TK----K  447 (660)
Q Consensus       393 ~--d-g--~I~iwd~~~-~~~~~~~~~~-------~~~v~~v~~--sp~-~--~l~s~~~d~~I~iwd~~---~~----~  447 (660)
                      +  + +  +|.+|.+.. ...+..+...       ...+..+|+  ++. |  ++++...+|.+..|.+.   .+    +
T Consensus        92 snR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~  171 (353)
T d1h6la_          92 SNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGK  171 (353)
T ss_dssp             EECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEE
T ss_pred             eCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeE
Confidence            5  2 2  577887752 3333333321       123455555  665 4  56777788888888653   23    2


Q ss_pred             eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCc-EEEE
Q 006126          448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQI-HLLS  524 (660)
Q Consensus       448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~-~l~~  524 (660)
                      .++.+. -...+-.|.+.+....|..+-.+..|+.++...........+.....++-.  +.+-.++.-.  ++. +|++
T Consensus       172 lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~--~D~EGlaiy~~~~~~Gyliv  248 (353)
T d1h6la_         172 KVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLT--PDIEGLTIYYAADGKGYLLA  248 (353)
T ss_dssp             EEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCC--SCEEEEEEEECGGGCEEEEE
T ss_pred             eeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCcccc--CCccccEEEEcCCCCeEEEE
Confidence            344554 346788999999988999998888777776653221111112111111211  5677777643  333 6655


Q ss_pred             -E-ecCcEEEEeCCC-Cceeeeec
Q 006126          525 -I-HEGQIDVYEAPT-LNHTSQLV  545 (660)
Q Consensus       525 -~-~d~~i~iwd~~~-~~~~~~~~  545 (660)
                       + .+++..+||... .+.+..+.
T Consensus       249 SsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         249 SSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EcCCCCeEEEEecCCCccccceEE
Confidence             4 678999999876 35555543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.09  E-value=2.4  Score=39.78  Aligned_cols=194  Identities=11%  Similarity=0.111  Sum_probs=110.6

Q ss_pred             EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc------CCC-eEEEEeC--C--CeEEEEeCCC-CceeeEeec
Q 006126          388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL------PQD-LFAFGFD--D--SSILVHCPCT-KKTKAKLKG  454 (660)
Q Consensus       388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s------p~~-~l~s~~~--d--~~I~iwd~~~-~~~~~~~~~  454 (660)
                      +++... .+-|.+||++ |+.++.+.  .+.++.+..-      ... -+++++.  +  .+|.+|.+.. ...+..+..
T Consensus        42 lI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            444444 5569999985 88877764  2445554433      222 4555552  2  2677787642 223333322


Q ss_pred             c-------CCCeEEEEE--eCC-CC-EEEEEeCCCcEEEEEcCCCe--eeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126          455 H-------QNRITCLAY--SLS-LN-VLVSSGADAQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH  521 (660)
Q Consensus       455 ~-------~~~v~~l~~--sp~-~~-~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  521 (660)
                      .       ...+..+++  ++. |. ++++...+|.+..|.+....  .+....++++..+     ..+..+.+.+....
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-----~q~EGCVvDde~~~  193 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-----SQTEGMAADDEYGS  193 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-----SCEEEEEEETTTTE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-----CccceEEEeCCCCc
Confidence            1       124566666  554 54 45667778999888763211  1222333322222     57889999999889


Q ss_pred             EEEE-ecCcEEEEeCCC-----CceeeeecCCCCCCCeEEEEEc--cCCC-EEE-EEecCCeEEEEECCC-CeeEEEee
Q 006126          522 LLSI-HEGQIDVYEAPT-----LNHTSQLVPDKMDLPITYATYS--CDGK-CIY-VSCKSGHVKVFDTST-LELRCQIN  589 (660)
Q Consensus       522 l~~~-~d~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s--~dg~-~l~-sg~~dg~I~iwd~~~-~~~~~~~~  589 (660)
                      |+++ .+..|+.++..-     +..+....+......+..+++-  +++. ||+ +.-.+++..|||..+ .+.+..+.
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            9988 445566666541     2222222222235678888764  3333 544 444578999999987 46666655

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=2.2  Score=38.43  Aligned_cols=222  Identities=11%  Similarity=0.011  Sum_probs=103.1

Q ss_pred             CcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCC-eEEEEeC---------CCeEEEEeCCCCceeeEe--eccCCCeE
Q 006126          395 GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFD---------DSSILVHCPCTKKTKAKL--KGHQNRIT  460 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~--~~~~~~~v~~v~~sp~~-~l~s~~~---------d~~I~iwd~~~~~~~~~~--~~~~~~v~  460 (660)
                      ..+.+||+.+++-...  +.........+ . -++ .++.|+.         -..+.+||..+.+....-  ......-.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGC-V-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-E-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEE-E-ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            4688999998764332  22211122222 2 245 5555542         136778888765433211  11111111


Q ss_pred             EEEEeCCCCEEEEEeCCCc-----EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-----cCc
Q 006126          461 CLAYSLSLNVLVSSGADAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-----EGQ  529 (660)
Q Consensus       461 ~l~~sp~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-----d~~  529 (660)
                      ++.+  +++.++.++.++.     ...+|..+..-.......   ...     .-.++... ++..++. +.     ...
T Consensus        97 ~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~r-----~~~~~~~~-~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          97 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML---TRR-----IGVGVAVL-NRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS---SCC-----BSCEEEEE-TTEEEEECCBCSSCBCCC
T ss_pred             cccc--ceeeEEecceecccccceeeeeccccCccccccccc---ccc-----ccceeeee-eecceEecCcccccccce
Confidence            2222  5666666554433     445666664322111111   000     11122233 3344444 32     245


Q ss_pred             EEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126          530 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELY  604 (660)
Q Consensus       530 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~  604 (660)
                      +..||..+.+....-.. .......+++. .+++.++.|+.+     ....++|..+.+....-.. .       .....
T Consensus       166 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-p-------~~r~~  235 (288)
T d1zgka1         166 AECYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-K-------HRRSA  235 (288)
T ss_dssp             EEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-S-------SCCBS
T ss_pred             EEEeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCc-c-------Ccccc
Confidence            88899876654322111 11111122222 345666666554     3567888887764432111 1       11111


Q ss_pred             eEEEEEecCCCCEEEEEeCCC-----eEEEEeCCCCceeccCCCC
Q 006126          605 PLVIAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF  644 (660)
Q Consensus       605 ~~~v~~sp~d~~~l~s~s~Dg-----~v~iw~~~~~~~~w~~~~~  644 (660)
                      . +++. . ++++++.||.++     .|.+||+.+.  .|...++
T Consensus       236 ~-~~~~-~-~~~l~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~  275 (288)
T d1zgka1         236 L-GITV-H-QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEVTR  275 (288)
T ss_dssp             C-EEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEE
T ss_pred             e-EEEE-E-CCEEEEEecCCCCeecceEEEEECCCC--EEEECCC
Confidence            1 2222 2 577888887654     4788999875  4766544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.30  E-value=5  Score=39.14  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=63.2

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEEecC---CcEEEEE--ec--
Q 006126          456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPD---QIHLLSI--HE--  527 (660)
Q Consensus       456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~---~~~l~~~--~d--  527 (660)
                      -...++|+|.|||+++++--..|.|++++..++.......+.... .....  .....|+|+|+   ..++..+  ..  
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge--~GLLgia~~Pdf~~n~~iYvsyt~~~~  103 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQ--NGLLGFAFHPDFKNNPYIYISGTFKNP  103 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSS--CSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCC--CceeeEEeCCCCccCCEEEEEEecCCC
Confidence            356789999999998887656799999998776542222111111 01111  46789999995   3444432  10  


Q ss_pred             --------C--cEEEEeCCCCc-------eeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126          528 --------G--QIDVYEAPTLN-------HTSQLVPDKMDLPITYATYSCDGKCIYVSCK  570 (660)
Q Consensus       528 --------~--~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~  570 (660)
                              +  .+..+......       .+...........-..+.|.|||.+.++.++
T Consensus       104 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                    1  13333332211       1111111111344678999999987776653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=8.9  Score=33.98  Aligned_cols=177  Identities=12%  Similarity=-0.022  Sum_probs=79.9

Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceeeEeeccCC-CeEEEEEeCC
Q 006126          395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQN-RITCLAYSLS  467 (660)
Q Consensus       395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~  467 (660)
                      ..+.+||..+.+....-..........+...++ .++.++.++     .+..+|..+......-..... .-.++... +
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~  148 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-N  148 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T
T ss_pred             chhhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-e
Confidence            367888987765543221111111111122255 445554433     345566665533221111100 01122222 3


Q ss_pred             CCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEEEeCC
Q 006126          468 LNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVYEAP  536 (660)
Q Consensus       468 ~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~iwd~~  536 (660)
                      +..++.|+.+     ..+..||..+++........   ..     ....+.... ++..++. +.+     .....+|..
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~-----~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~  219 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---TI-----RSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVE  219 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---SC-----CBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccc---cc-----cccccccce-eeeEEEecCccccccccceeeeeec
Confidence            4455555543     35788888775432211111   00     111233333 3444444 322     357888887


Q ss_pred             CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCe
Q 006126          537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE  583 (660)
Q Consensus       537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~  583 (660)
                      +.+....-.. .....-.+++ ..++++++.|+.++     .|.+||+.+.+
T Consensus       220 ~~~~~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         220 TETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ceeeecccCc-cCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            6654332111 1111111233 24678888887653     48899998765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.61  E-value=13  Score=35.90  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=36.4

Q ss_pred             CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe--e------ccCCCeEEEEEeCC
Q 006126          415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL--K------GHQNRITCLAYSLS  467 (660)
Q Consensus       415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~--~------~~~~~v~~l~~sp~  467 (660)
                      -..-++++|.|+| ++++--..|.|++++..+++.....  .      .-.+....|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3456799999999 6655545799999998776543221  1      12356788999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.09  E-value=16  Score=33.67  Aligned_cols=59  Identities=12%  Similarity=0.070  Sum_probs=37.5

Q ss_pred             CCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe--eccCCCeEEEEEeC-CCCEEEEE
Q 006126          416 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSL-SLNVLVSS  474 (660)
Q Consensus       416 ~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp-~~~~l~s~  474 (660)
                      ...+.++++||+  .+++-+..+.|++|++.....+...  ..-.+..-.+.+.+ +|.+.+.+
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            456789999999  5566667889999998754333221  11334566777776 45444443