Citrus Sinensis ID: 006148


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
MKEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGAQSVASDNETVDTEESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFVFSVELKE
ccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccEEEEEEccccccccEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccHHHccccccccHHcccccccHHHHHEEEccEEEccc
cccEcccccccccccEEEcccccccccccccccccccHccccccccccccccccccccccccccccHHHccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEEEHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHcccHHHHHHHcccccHHHHHHHHHHEEEEEccc
mkevdkrkinnkqprrsakteRTEQKQRqenggknlnaKQIETKAsitrrdsgnvvsdtnagteaseVYENGVTKYvddlnsfeevpldlksngteelTDYEKqgkqgkeevsdsetvkdsvssqedslsvegekvkksstvpkiknssvndspgsrvrsgremkgfpntpkkptkpdrgslsintksssgkscnemkvptkpssetsegvddkpieemkeidlldetsngaqsvasdnetvdteesgehideaNLNQKIEEMELRIEKLEEELRDVAALEISLYSvvpehgssahkvhsparrLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKScgndvsrlTFWLSNTIVLREIICQafgnshnstpvtrisesngfskksegksqslkwkggsgnkqlnghlqfDEDWQEMGTFIAALQKVESWIFSRIVESVWWQaltphmqspvgsttkpigkllgpalgdqqqgsfSINLWKNAFQDALQKlcpvragghecgclpvlgRMVMEQCVARLDVAMFNAILREsaneiptdpvsdpildskvlpipagdlsfgsgaqlknsvgNWSRWLTdmfgmdtddspkedqdftedddgqdgvgepksFILLNSFsdllmlpkdmlmdRSIRQEVNFIIKANLHLEFIMFVFSVELKE
mkevdkrkinnkqprrsakterteqkqrqenggknlnakqietkasitrrdsgnvvsdtnagteasevyenGVTKYVDDLNSFEEVPLDLKSNGTEELTDyekqgkqgkeevsdsetvkdsvssqedslsvegekvkksstvpkiknssvndspgsrvrsgremkgfpntpkkptkpdrgslsintksssgkscnemkvptkpssetsegvddkpiEEMKEIdlldetsngaqsvasdnetvdteesgehideanlnqkIEEMELRIEKLEEELRDVAALEISLYSvvpehgssahkvhsparRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAfgnshnstpvtrisesngfskksegksqslkwkggsgnkQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESaneiptdpvsDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFVFSVELKE
MKEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGAQSVASDNETVDTEESGEHIDEANLNQkieemelriekleeelrDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKedqdftedddgqdgVGEPKSFILLNSFSdllmlpkdmlmdRSIRQEVNFIIKANLHLEFIMFVFSVELKE
********************************************************************YENGVTKYVDDLN***********************************************************************************************************************************************************************************************ELRDVAALEISLYSVVP************ARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGN***************************************GHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHM**********IGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESAN*I********ILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFG***************************SFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFVFSV****
***************************************************************************************************************************************************************************************************************************************************************************************LEISLYSVVPE********HSPARRLSRIYIHACKHWTQNK**TIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQA**************************************************WQEMGTFIAALQKVESWIFSRIVESVWWQALT**************************QGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDT***********************KSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFVFSVELK*
********************************GKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEEL*****************************************************************MKGF********************************************DDKPIEEMKEIDLLDETSN******************EHIDEANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPE************RRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPV**********************KGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTD****************DGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFVFSVELKE
*****************************************************************SEVYENGVTKYVDDLN***************************************************************************************************************************************EEMK*IDLLDE***********************IDEANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGN*****************************************LQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPH************************QGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDT*********************EPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFVFSVELKE
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MKEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGAQSVASDNETVDTEESGEHIDxxxxxxxxxxxxxxxxxxxxxxxxxxxxEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFVFSVELKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query659
255571608 796 conserved hypothetical protein [Ricinus 0.946 0.783 0.678 0.0
356570502 810 PREDICTED: uncharacterized protein LOC10 0.963 0.783 0.631 0.0
356503466 895 PREDICTED: uncharacterized protein LOC10 0.984 0.725 0.615 0.0
359481826715 PREDICTED: uncharacterized protein LOC10 0.842 0.776 0.718 0.0
357509807710 hypothetical protein MTR_7g092460 [Medic 0.834 0.774 0.637 0.0
224120378689 predicted protein [Populus trichocarpa] 0.661 0.632 0.784 0.0
297739709652 unnamed protein product [Vitis vinifera] 0.749 0.757 0.644 0.0
449466590 795 PREDICTED: uncharacterized protein LOC10 0.951 0.788 0.561 0.0
224137966637 predicted protein [Populus trichocarpa] 0.647 0.670 0.776 0.0
449519088 795 PREDICTED: uncharacterized LOC101213868 0.951 0.788 0.560 0.0
>gi|255571608|ref|XP_002526750.1| conserved hypothetical protein [Ricinus communis] gi|223533939|gb|EEF35664.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/656 (67%), Positives = 524/656 (79%), Gaps = 32/656 (4%)

Query: 1   MKEVDKRKI-NNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDT 59
           MKE +KR+  NN Q +R AKTE+  QK  Q      L AK+ E+K      DS  VVSD+
Sbjct: 1   MKETNKRRTPNNNQSKRVAKTEKRVQKPHQ-----TLTAKETESKP-----DSSIVVSDS 50

Query: 60  NAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGT----------EELT-DY-EKQGKQ 107
           N G+E S+VYEN V  YVDD+N FEE P D KSN            ++L+ DY EK+ KQ
Sbjct: 51  NTGSEPSQVYENLVIHYVDDVNRFEEAPQDPKSNSVTANANKNDILDDLSNDYLEKERKQ 110

Query: 108 GKEEVSDSETVKDSVSSQEDSLSVEG-EKVKKSSTVPK-IKNS-SVNDSPGSRVRSGREM 164
           GKEE SD+ET+KDSVSSQ DSL+ +  EKV+K S VPK + N  S   S   RVRS +  
Sbjct: 111 GKEEESDTETIKDSVSSQGDSLTADDDEKVEKVSRVPKSVSNKDSSESSRAHRVRSDKTS 170

Query: 165 KGFPN-TPKKPTKPDRGSLSINTKSS-SGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEI 222
           K   N TPKKP KP +G   +++K+S   K+  +MKVP+KPS E+SEG D+KP E + EI
Sbjct: 171 KPQSNNTPKKPAKPIKGPSKVSSKTSLVDKNSRDMKVPSKPSLESSEGADEKPTEGLNEI 230

Query: 223 DLLDETSNGAQSVASDNETVDTEESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEI 282
           D+LDETSNG QSVASDNETVD EE+GEH DE  LNQ+I EME+++ KLEEELR+VAALEI
Sbjct: 231 DVLDETSNGTQSVASDNETVDAEENGEHEDEVALNQRIGEMEIKVGKLEEELREVAALEI 290

Query: 283 SLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGND 342
           SLYSVVPEHGSSAHKVH+PARRLSR+YIHACKHW Q+KRATIAKN+VSGLVL++KSCGND
Sbjct: 291 SLYSVVPEHGSSAHKVHTPARRLSRLYIHACKHWAQDKRATIAKNTVSGLVLISKSCGND 350

Query: 343 VSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNK 402
           V RLTFWLSNTI+LREII QAFG+S NS+ +T+ S  NG SKK+EGK+ +LKWKGGSG++
Sbjct: 351 VPRLTFWLSNTIMLREIISQAFGSSRNSSALTKCSAPNGGSKKNEGKAAALKWKGGSGSR 410

Query: 403 QLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVG--STTKPIG 460
           Q+NG +Q  +DWQE GT+ AAL+KVESWIFSRIVESVWWQA+TPHMQSP G  S+ K  G
Sbjct: 411 QVNGFMQLVDDWQETGTYTAALEKVESWIFSRIVESVWWQAVTPHMQSPGGTLSSNKSFG 470

Query: 461 KLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLD 520
           +L+GPALGD QQGSFSINLW NAF+DA Q+LCPVRAGGHECGCLP++ RMVMEQCV+RLD
Sbjct: 471 RLMGPALGDHQQGSFSINLWNNAFRDAFQRLCPVRAGGHECGCLPIIARMVMEQCVSRLD 530

Query: 521 VAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMF 580
           VAMFNAILRESA++IPTDPVSDPI+DSKVLPIPAGDLSFGSGAQLKNSVG WSRWLTDMF
Sbjct: 531 VAMFNAILRESAHDIPTDPVSDPIVDSKVLPIPAGDLSFGSGAQLKNSVGTWSRWLTDMF 590

Query: 581 GMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEV 636
           GMD+DDS KEDQ  ++DD+ +   GEPK+F LLN  SDLLMLPKDMLMDRSIR+EV
Sbjct: 591 GMDSDDSLKEDQLSSDDDERKS--GEPKAFNLLNELSDLLMLPKDMLMDRSIRKEV 644




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570502|ref|XP_003553424.1| PREDICTED: uncharacterized protein LOC100804499 [Glycine max] Back     alignment and taxonomy information
>gi|356503466|ref|XP_003520529.1| PREDICTED: uncharacterized protein LOC100777738 [Glycine max] Back     alignment and taxonomy information
>gi|359481826|ref|XP_002282962.2| PREDICTED: uncharacterized protein LOC100253823 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357509807|ref|XP_003625192.1| hypothetical protein MTR_7g092460 [Medicago truncatula] gi|124360125|gb|ABN08141.1| hypothetical protein MtrDRAFT_AC155881g14v1 [Medicago truncatula] gi|355500207|gb|AES81410.1| hypothetical protein MTR_7g092460 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224120378|ref|XP_002331033.1| predicted protein [Populus trichocarpa] gi|222872963|gb|EEF10094.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739709|emb|CBI29891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449466590|ref|XP_004151009.1| PREDICTED: uncharacterized protein LOC101213868 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224137966|ref|XP_002322696.1| predicted protein [Populus trichocarpa] gi|222867326|gb|EEF04457.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449519088|ref|XP_004166567.1| PREDICTED: uncharacterized LOC101213868 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query659
TAIR|locus:2053834 669 AT2G42320 "AT2G42320" [Arabido 0.784 0.772 0.501 1.4e-128
TAIR|locus:2169349723 AT5G06930 [Arabidopsis thalian 0.282 0.257 0.595 4.5e-105
TAIR|locus:2082319 921 AT3G01810 "AT3G01810" [Arabido 0.843 0.603 0.388 7.6e-96
TAIR|locus:2169293 848 AT5G43230 "AT5G43230" [Arabido 0.262 0.204 0.608 2.9e-84
TAIR|locus:504955937734 AT2G22795 "AT2G22795" [Arabido 0.339 0.305 0.272 8.3e-08
DICTYBASE|DDB_G0291444447 DDB_G0291444 [Dictyostelium di 0.361 0.532 0.256 7.8e-07
DICTYBASE|DDB_G0293562527 DDB_G0293562 [Dictyostelium di 0.371 0.464 0.236 1.3e-06
DICTYBASE|DDB_G02911251087 gnrA "gelsolin-related protein 0.546 0.331 0.228 1.7e-06
DICTYBASE|DDB_G0271916367 rtoA "unknown" [Dictyostelium 0.362 0.651 0.227 2.4e-05
FB|FBgn0037836 2743 CG14692 [Drosophila melanogast 0.355 0.085 0.252 6.9e-05
TAIR|locus:2053834 AT2G42320 "AT2G42320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
 Identities = 275/548 (50%), Positives = 345/548 (62%)

Query:    95 TEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSP 154
             T+ +   +K  K   ++ ++ E  KD + ++E+S ++    V   ST+    + S     
Sbjct:    16 TKSVRKDQKLQKTNSQKKTEQEKHKD-LDTKEESSNIS--TVASDSTIQSDPSESYETVD 72

Query:   155 GSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSS---SGKSCNEMKVPTKPSSETSEGV 211
                VR   +  G   +     + D  S+   T+     SG  C+  K       E  +  
Sbjct:    73 ---VRYLDDDNGVIASADAHQESDSSSVVDKTEKEHNLSGSICDLEK--DVDEQECKDAN 127

Query:   212 DDKPIEEMKEIDLLDETSNGAQSVASDNETVD-TEESGEHIDEANLNQXXXXXXXXXXXX 270
              DK   E    D+ ++ SNGA S  S+NE  D TE +G + ++ +  +            
Sbjct:   128 IDKDAREGISADVWEDASNGALSAGSENEAADVTENNGGNFEDGSSEEKIERLETRIEKL 187

Query:   271 XXXXXDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVS 330
                  +VAALEISLYSVVP+H SSAHK+H+PARR+SRIYIHACKH+TQ KRATIA+NSVS
Sbjct:   188 EEELREVAALEISLYSVVPDHCSSAHKLHTPARRISRIYIHACKHFTQGKRATIARNSVS 247

Query:   331 GLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKS 390
             GLVLVAKSCGNDVSRLTFWLSN I LR+II QAFG S     +T+ISE N       GK 
Sbjct:   248 GLVLVAKSCGNDVSRLTFWLSNIIALRQIISQAFGRSR----ITQISEPNESGNSDSGKK 303

Query:   391 QSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQS 450
              +L+WK        NG  Q  EDWQE  TF  AL+K+E W+FSRIVESVWWQ  TPHMQS
Sbjct:   304 TNLRWK--------NGFQQLLEDWQETETFTTALEKIEFWVFSRIVESVWWQVFTPHMQS 355

Query:   451 PV--GSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLG 508
             P    S +K  GKL+GP+LGDQ QG+FSI+LWKNAF+DALQ++CP+R  GHECGCLPVL 
Sbjct:   356 PEDDSSASKSNGKLMGPSLGDQNQGTFSISLWKNAFRDALQRICPMRGAGHECGCLPVLA 415

Query:   509 RMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNS 568
             RMVM++C+ R DVAMFNAILRES ++IPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKN+
Sbjct:   416 RMVMDKCIGRFDVAMFNAILRESEHQIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNA 475

Query:   569 VGNWSRWLTDMFGMDTDDSPKXXXXXXXXXXXXXXVGEPKSFILLNSFSXXXXXXXXXXX 628
             +GNWSR LT+MFGM++DDS                  E K+F+LLN  S           
Sbjct:   476 IGNWSRCLTEMFGMNSDDSSAKEKRNSEDDHV-----ESKAFVLLNELSDLLMLPKDMLM 530

Query:   629 XRSIRQEV 636
               SIR+E+
Sbjct:   531 EISIREEI 538




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2169349 AT5G06930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082319 AT3G01810 "AT3G01810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169293 AT5G43230 "AT5G43230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291444 DDB_G0291444 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291125 gnrA "gelsolin-related protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271916 rtoA "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037836 CG14692 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00025533001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (681 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query659
PRK08581619 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami 0.002
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated Back     alignment and domain information
 Score = 40.5 bits (95), Expect = 0.002
 Identities = 40/255 (15%), Positives = 80/255 (31%), Gaps = 42/255 (16%)

Query: 2   KEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDS--GNVVSDT 59
           K+ +  + +     +            Q+N  K  +     T  S    D    N+    
Sbjct: 44  KKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTN 103

Query: 60  NAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVK 119
                    Y++  +      N F         N   +++DYE+     K     ++   
Sbjct: 104 INQLLTKNKYDDNYSLTTLIQNLF---------NLNSDISDYEQPRNSEKSTNDSNKNSD 154

Query: 120 DSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDR 179
            S+ +  D+         +SS   K  N     S  ++          P+T  K     +
Sbjct: 155 SSIKNDTDT---------QSSKQDKADNQKAPSSNNTK----------PSTSNKQPNSPK 195

Query: 180 GSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGA----QSV 235
            +    + S      ++     K SS+ ++ + D  ++      +LD+ S  A    +  
Sbjct: 196 PTQPNQSNSQPA---SDDTANQKSSSKDNQSMSDSALDS-----ILDQYSEDAKKTQKDY 247

Query: 236 ASDNETVDTEESGEH 250
           AS ++   TE S   
Sbjct: 248 ASQSKKDKTETSNTK 262


Length = 619

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 659
PF01843105 DIL: DIL domain; InterPro: IPR018444 Dilute encode 96.87
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains Back     alignment and domain information
Probab=96.87  E-value=0.00029  Score=60.71  Aligned_cols=99  Identities=17%  Similarity=0.288  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhchHHHHHhhcCCCCCCCCC
Q 006148          510 MVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPK  589 (659)
Q Consensus       510 lVMEQCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfGid~~ds~~  589 (659)
                      +++.|..--+++-.||.++-...                       -.++-.|+|+|.-|..-..|... -|+...    
T Consensus         1 Q~f~qlf~~i~~~~fN~ll~~~~-----------------------~~~~~~g~qi~~nls~l~~W~~~-~~l~~~----   52 (105)
T PF01843_consen    1 QLFSQLFHYINASLFNSLLLRRK-----------------------YCSWSKGVQIRYNLSELEDWARS-HGLEEA----   52 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHSS------------------------B-HHHHHHHHHHHHHHHHCCCC-TTSTTH----
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCC-----------------------ccccccHHHHHHHHHHHHHHHHh-cccchh----
Confidence            46788889999999999985432                       17899999999999999999765 222111    


Q ss_pred             ccCCCCCCCCCCCCCCCCccccchhhhhcccccchhhccCcchhhhhccccChhHHHHHHhHh
Q 006148          590 EDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFV  652 (659)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCPs~~lpLIkRiL~~v  652 (659)
                                      ....|.-|..+++||++||..+.|-.+++++||.++..-|++||.+.
T Consensus        53 ----------------~~~~l~~l~Qa~~lL~~~k~~~~d~~~~~~~c~~Ln~~Qi~~iL~~Y   99 (105)
T PF01843_consen   53 ----------------AEEHLQPLSQAANLLQLRKSTLQDWDSLRETCPSLNPAQIRKILSNY   99 (105)
T ss_dssp             -----------------HHHCHHHHHHHHHCCC--SSHHHHHHHCCCTTTS-HHHHHHHHCCB
T ss_pred             ----------------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHcccCCHHHHHHHHHhC
Confidence                            13588999999999999999999999999999999999999999764



The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query659
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 5e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Length = 419 Back     alignment and structure
 Score = 88.8 bits (219), Expect = 5e-19
 Identities = 46/386 (11%), Positives = 106/386 (27%), Gaps = 82/386 (21%)

Query: 255 NLNQKIEEMELRIEKLEEELRD--VAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHA 312
            +N+++  +    E L +E+ +  +   E+    V  +   S   V  PAR L  +    
Sbjct: 4   QINEELYRLLEDTEILNQEITEGLLKGFEVPDAGVAIQL--SKRDVVYPARILIIVLSEM 61

Query: 313 CKHWTQNKRATIAKNSVSGLVLVAKSCGND--VSRLTFWLSNTIVLREIICQAFGNSHNS 370
            +     +  +     ++ +  V      +  +    FWL+N   L   +  A  +    
Sbjct: 62  WRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSI--- 118

Query: 371 TPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESW 430
                                   +K G  +++   ++    + ++        + +   
Sbjct: 119 -------------------LTEETFKNGMTDEEYKEYVSLVTELKDD------FEALSYN 153

Query: 431 IFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQK 490
           I++  ++ +  Q L           ++ +               F+ N  +    D L  
Sbjct: 154 IYNIWLKKLQKQ-LQK-KAINAVVISESLPGFSAGETSGFLNKIFA-NTEEYTMDDILTF 210

Query: 491 LCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVL 550
              +            +   V+   +  +D   FN ++                      
Sbjct: 211 FNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELI---------------------- 248

Query: 551 PIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSF 610
            +    LS+  G QL  +V     W       D  +                        
Sbjct: 249 -MKRNFLSWKRGLQLNYNVTRLEEWCKTHGLTDGTE----------------------CL 285

Query: 611 ILLNSFSDLLMLPKDMLMDRSIRQEV 636
             L   + LL + K  + D  I + +
Sbjct: 286 QHLIQTAKLLQVRKYTIEDIDILRGI 311


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query659
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 97.9
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 96.87
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=97.90  E-value=1.6e-05  Score=82.20  Aligned_cols=269  Identities=16%  Similarity=0.193  Sum_probs=168.8

Q ss_pred             ccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeecc-cCC-CcchhhhhhhHHHHHHHH--HHHhcCCCCC
Q 006148          295 AHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSC-GND-VSRLTFWLSNTIVLREII--CQAFGNSHNS  370 (659)
Q Consensus       295 shKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWLSN~vVLReII--sqa~g~s~~~  370 (659)
                      .+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+  .|.....   
T Consensus        44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~---  120 (419)
T 2f6h_X           44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILT---  120 (419)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhc---
Confidence            455668998877666667777544444444444555544444555 467 588999999999999988  4443100   


Q ss_pred             CCcccccccCCCCCCCcCccccccccCCCCCcccCCccCCCCcccc----hhHHHHHHhhhhhhhhhhhhhhhhhc---c
Q 006148          371 TPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE----MGTFIAALQKVESWIFSRIVESVWWQ---A  443 (659)
Q Consensus       371 ~~~~~~~~~ng~~k~~~~~s~~~~wk~~~~~k~~~~~~~~~~dW~e----~~Tf~~ALeKvEsWIFSRIVESVWWQ---a  443 (659)
                                |++     ...+                ....+|.+    ...|...|+-+.-.||+.++..+-=.   .
T Consensus       121 ----------~~~-----~~~~----------------~~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~  169 (419)
T 2f6h_X          121 ----------EET-----FKNG----------------MTDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKK  169 (419)
T ss_dssp             ----------CCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cCc-----cccc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      000     0000                01134433    34566778888889999887554322   3


Q ss_pred             cCCCccCCCC----CCCccCCCcCCCCCcccccCcchHHHHHHHHHHHHHhcCcCCCCCCCccchHHHHHHHHHHHHHHh
Q 006148          444 LTPHMQSPVG----STTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARL  519 (659)
Q Consensus       444 lTPhMQs~~~----~s~k~~g~~~~~~lgDq~QG~fSI~LWK~AF~dA~eRLCPvRAgGHECGCLPVLaRlVMEQCVaRL  519 (659)
                      +.|-|+-+..    ...+..| +.+...+.  +...+++-=-+-|...+..++       .|+==|.|.++++.|...=+
T Consensus       170 l~paIl~~~~~~~~~~~~~~~-~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fsQlf~~I  239 (419)
T 2f6h_X          170 AINAVVISESLPGFSAGETSG-FLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVTTLLNYV  239 (419)
T ss_dssp             HHHHHTTSCSSTTTTC------------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccccccccccccc-cccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHH
Confidence            3455543321    1111111 11111221  122343332333333333332       35556999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhchHHHHHhhcCCCCCCCCCccCCCCCCCC
Q 006148          520 DVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDD  599 (659)
Q Consensus       520 DVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfGid~~ds~~~~~~~~~~~~  599 (659)
                      ++-+||.||-..                       +-.+|-.|.|+|--|..--.|+... |+.                
T Consensus       240 n~~lFN~LL~r~-----------------------~~cs~s~G~qIr~nls~Le~W~~~~-~l~----------------  279 (419)
T 2f6h_X          240 DAICFNELIMKR-----------------------NFLSWKRGLQLNYNVTRLEEWCKTH-GLT----------------  279 (419)
T ss_dssp             HHHHHHHHHTCS-----------------------SCCCHHHHHHHHHHHHHHHHHHHHT-TCT----------------
T ss_pred             HHHHHHHHhccC-----------------------cccchhhHHHHHhhHHHHHHHHHHc-CCh----------------
Confidence            999999998532                       2478999999999999999999883 331                


Q ss_pred             CCCCCCCCccccchhhhhcccccchhhccCcchhhhhccccChhHHHHHHhHh
Q 006148          600 GQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFV  652 (659)
Q Consensus       600 ~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCPs~~lpLIkRiL~~v  652 (659)
                         .  ....|.=|..++.||.++|.-+.|-....++||.++..=|.|||...
T Consensus       280 ---~--a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y  327 (419)
T 2f6h_X          280 ---D--GTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQY  327 (419)
T ss_dssp             ---T--HHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHC
T ss_pred             ---h--HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhC
Confidence               0  11257788999999999999888888899999999999999999764



>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00