Citrus Sinensis ID: 006156

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
ccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEEccEEEccccccccccccEEEEEEEccEEEEEEEEccccccccccccccccccEEcccccccEEEEEEEccccccEEEEEEEccccccccEEEEcccHHHHHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
cccHHHcccccccccccccccccHEEcccccccccccccccccEEEEEcccEEEccccccccccccEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEHHHcEEEEccccccccEEEEEEEccccccccEEcccccHHHHHHHHHHHcEEccccccccEEEEccccHHHHHHccEccccccccccccccccHHHccccccccHHHcccccccccccccccccccccccccccccccEHHHHHHHHHHHccHHHHccccHHcccccHHHHHHHHHccccccccHHcccccccccccccccccccHcccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
mqemelhdlsddaDYAASMqqgsssmmrsdsskrssssesegaelvylkdnvtihptqfASERISGRLKLIKQGSSLFMTWipykgqnsntrlsekdrnlytiravpftevrsirrhtpaFGWQYIIVVLSsglafpplyfytgGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSslelpravsiasgsstpvsigdsptnvnlertngglghdshsisqfhgrqkqkaqdpardISIQVLEKFSLVTKFARETTSQLFRenhsngfgafekkfdsqsaldfdhkasydtetivneipvapdpvefdkltlvwgkprqpplgseewttfldnegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFynfdlgycqgmsdllsPILFVMEDESQSFWCFVALMERlgpnfnrdqngmhSQLFALSKLVElldnplhnyfkqndclnyfFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICagengaasippgtppslpidngllysqqedevl
MQEMELHDLSDDADYAASMQqgsssmmrsdsskrssSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIpykgqnsntrlsekdrnlytiravpftevrsirrHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAvsiasgsstpvsigdsptNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWgkprqpplgseewttfldnegrvmdsnaLRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIkrqwqsispeqarrftkfrerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGllysqqedevl
MQEMELHDLSDDADYAAsmqqgsssmmrsdsskrssssesegAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
********************************************LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQN*******KDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTL*************************************************************ISIQVLEKFSLVTKFARETTSQLFR*****GFGAFE*******ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPR***LGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI*****RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN*****************************
****ELH************************************ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWI*********************RAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT****************************************************************************************************************************************************************************************FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE******************************
*********SDDADYAA*************************AELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSH*****************RDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
***********DADYAA**Q************K*S***ESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKG*****RLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPV**GD*********************************DPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFD*******ETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPP*TP*******************
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MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query658 2.2.26 [Sep-21-2011]
Q8TC07691 TBC1 domain family member yes no 0.729 0.694 0.355 4e-90
Q9CXF4671 TBC1 domain family member yes no 0.455 0.447 0.473 3e-83
Q8BYH7645 TBC1 domain family member no no 0.693 0.706 0.362 7e-78
Q9HA65648 TBC1 domain family member no no 0.785 0.797 0.320 7e-76
Q9UUH7743 GTPase-activating protein yes no 0.879 0.779 0.297 1e-67
P09379730 GTPase-activating protein yes no 0.843 0.760 0.291 2e-66
Q8TBP0767 TBC1 domain family member no no 0.442 0.379 0.424 4e-61
Q6BU76757 GTPase-activating protein yes no 0.855 0.743 0.263 1e-57
Q6FWI1745 GTPase-activating protein yes no 0.474 0.418 0.340 1e-53
P48365746 GTPase-activating protein yes no 0.442 0.390 0.358 3e-53
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function desciption
 Score =  333 bits (853), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/518 (35%), Positives = 286/518 (55%), Gaps = 38/518 (7%)

Query: 108 FTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDAN 167
            T+++SI+++    GW Y++  L   +  P L+F+ G  +  + +++++V+L  S +D  
Sbjct: 132 LTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQDKR 191

Query: 168 VFLVNDFDNRLQRTLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSIS 227
             LVN  +  L ++  +                  + D P    ++    GL      + 
Sbjct: 192 TLLVNCQNKSLSQSFEN------------------LLDEPAYGLIQ---AGLLDRRKLLW 230

Query: 228 QFHGRQKQKAQDPARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKF-DSQS 286
             H  +K K +DP     I     FS VT +  ++        H            D+  
Sbjct: 231 AIHHWKKIK-KDPYTATMI----GFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIP 285

Query: 287 ALDFDHKASYDTETIVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMD 346
            L  + +     E ++  I +   PV            R+ P+  EEWT  +D+EGR+++
Sbjct: 286 GLKINQQEEPGFE-VITRIDLGERPV----------VQRREPVSLEEWTKNIDSEGRILN 334

Query: 347 SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406
            + +++ IF GG+ H LR++ W FLLGY+ +DST  ER  L+  K  EY  +K QW+SIS
Sbjct: 335 VDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSIS 394

Query: 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
            EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP + LL DIL+TY  Y+FDLGY Q
Sbjct: 395 QEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQ 454

Query: 467 GMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLH 526
           GMSDLLSP+L+VME+E  +FWCF + M+++  NF     GM +QL  LS L+ LLD+   
Sbjct: 455 GMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFC 514

Query: 527 NYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYR 586
           +Y +  D    +FCFRW+LI+FKREF +   +RLWEV+WT     + HL +C AIL+  +
Sbjct: 515 SYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCTNFHLLLCCAILESEK 574

Query: 587 NKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCI 624
            +IM +   F+ +LK INELS +ID++ IL  AEA+ +
Sbjct: 575 QQIMEKHYGFNEILKHINELSMKIDVEDILCKAEAISL 612
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Homo sapiens (taxid: 9606)
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query658
225445585657 PREDICTED: GTPase-activating protein gyp 0.995 0.996 0.815 0.0
297738991684 unnamed protein product [Vitis vinifera] 0.995 0.957 0.782 0.0
449443057655 PREDICTED: TBC1 domain family member 15- 0.993 0.998 0.783 0.0
356548490656 PREDICTED: TBC1 domain family member 15- 0.993 0.996 0.772 0.0
356562977655 PREDICTED: TBC1 domain family member 15- 0.992 0.996 0.766 0.0
255572477645 conserved hypothetical protein [Ricinus 0.969 0.989 0.792 0.0
357478201666 TBC1 domain family member [Medicago trun 0.992 0.980 0.758 0.0
297792599674 hypothetical protein ARALYDRAFT_495330 [ 0.987 0.964 0.725 0.0
186531517673 RabGAP/TBC domain-containing protein [Ar 0.987 0.965 0.725 0.0
334188345690 RabGAP/TBC domain-containing protein [Ar 0.987 0.942 0.707 0.0
>gi|225445585|ref|XP_002285365.1| PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1103 bits (2852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/655 (81%), Positives = 594/655 (90%)

Query: 1   MQEMELHDLSDDADYAASMQQGSSSMMRSDSSKRSSSSESEGAELVYLKDNVTIHPTQFA 60
           MQE ELHDLSDDADYAAS  QGS+S  RS SSKRSSSSES+GAE+VY KDNVTIHPTQ+A
Sbjct: 1   MQEAELHDLSDDADYAASQLQGSASFSRSGSSKRSSSSESDGAEIVYSKDNVTIHPTQYA 60

Query: 61  SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPA 120
           SERISGRL+LIKQGSSLFMTWIPYKGQ SN RLSEKD++LYTIRAVPFT+VRSIRRHTP 
Sbjct: 61  SERISGRLRLIKQGSSLFMTWIPYKGQRSNPRLSEKDKSLYTIRAVPFTDVRSIRRHTPT 120

Query: 121 FGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDFDNRLQR 180
            GWQY+IVVLSSGLAFPPLYFY GGVREFLATIKQH  LVRS +DANVFLVNDF + LQR
Sbjct: 121 LGWQYVIVVLSSGLAFPPLYFYNGGVREFLATIKQHAFLVRSADDANVFLVNDFQDPLQR 180

Query: 181 TLSSLELPRAVSIASGSSTPVSIGDSPTNVNLERTNGGLGHDSHSISQFHGRQKQKAQDP 240
           TLSSLELP AVS+A+G ST VS+ + P+N N E+ +GG      + SQ++GR + K  DP
Sbjct: 181 TLSSLELPMAVSVANGPSTSVSVSEPPSNENQEKADGGNFDGLGATSQYNGRHRPKIHDP 240

Query: 241 ARDISIQVLEKFSLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTET 300
           ARD+SIQVLEKFSLVTKFAR+TTSQLFRE+H +GFG+ +++  +QS LD  HKAS D + 
Sbjct: 241 ARDLSIQVLEKFSLVTKFARDTTSQLFRESHGDGFGSNDRRHHNQSLLDSPHKASSDEQK 300

Query: 301 IVNEIPVAPDPVEFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVD 360
           + +EIPV  DP+EFDKL LVWGKPRQPPLGSEEW TFLD+EGR+MDS ALRKRIFYGG++
Sbjct: 301 VPDEIPVPSDPLEFDKLALVWGKPRQPPLGSEEWATFLDSEGRIMDSKALRKRIFYGGIE 360

Query: 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERK 420
           H LR+EVW FLLGY+AYDST AEREYL  IKKSEYE +K+QWQSISPEQA+RFTKFRERK
Sbjct: 361 HSLRKEVWTFLLGYHAYDSTSAEREYLVSIKKSEYETVKQQWQSISPEQAKRFTKFRERK 420

Query: 421 GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME 480
           GLI+KDVVRTDRS++F+DGDDNPNV+LLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM+
Sbjct: 421 GLIEKDVVRTDRSLSFYDGDDNPNVYLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMK 480

Query: 481 DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFC 540
           DE++SFWCFVALMERLGPNFNRDQNGMH+QLFA+SKLVELLD+PLHNYFKQNDCLNYFFC
Sbjct: 481 DEAESFWCFVALMERLGPNFNRDQNGMHTQLFAISKLVELLDSPLHNYFKQNDCLNYFFC 540

Query: 541 FRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLL 600
           FRWVLIQFKREFEYEKTM+LWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLL
Sbjct: 541 FRWVLIQFKREFEYEKTMKLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLL 600

Query: 601 KFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQED 655
           KFINELSG+IDLDA LRDAEALCICAGENGAA+IPPGTPPSLPID+GLL  QQ+D
Sbjct: 601 KFINELSGQIDLDATLRDAEALCICAGENGAANIPPGTPPSLPIDSGLLCPQQDD 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738991|emb|CBI28236.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443057|ref|XP_004139297.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548490|ref|XP_003542634.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356562977|ref|XP_003549744.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|255572477|ref|XP_002527173.1| conserved hypothetical protein [Ricinus communis] gi|223533438|gb|EEF35186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357478201|ref|XP_003609386.1| TBC1 domain family member [Medicago truncatula] gi|355510441|gb|AES91583.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|297792599|ref|XP_002864184.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] gi|297310019|gb|EFH40443.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186531517|ref|NP_200071.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008854|gb|AED96237.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334188345|ref|NP_001190524.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008855|gb|AED96238.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query658
DICTYBASE|DDB_G0288811829 DDB_G0288811 "putative GTPase 0.615 0.488 0.421 1.7e-103
UNIPROTKB|F1NBY5667 TBC1D15 "Uncharacterized prote 0.452 0.446 0.486 3e-94
UNIPROTKB|F1SH24674 TBC1D15 "Uncharacterized prote 0.455 0.445 0.473 9.9e-92
UNIPROTKB|F1PGI0682 TBC1D15 "Uncharacterized prote 0.455 0.439 0.473 2.6e-91
UNIPROTKB|Q8TC07691 TBC1D15 "TBC1 domain family me 0.455 0.434 0.48 4.2e-91
UNIPROTKB|J9NYJ6674 TBC1D15 "Uncharacterized prote 0.455 0.445 0.473 4.2e-91
UNIPROTKB|J3KNI9682 TBC1D15 "TBC1 domain family me 0.455 0.439 0.48 5.4e-91
UNIPROTKB|F1N090675 TBC1D15 "Uncharacterized prote 0.455 0.444 0.473 8.7e-91
UNIPROTKB|F1LPD8670 Tbc1d15 "Protein Tbc1d15" [Rat 0.455 0.447 0.476 2.3e-90
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.455 0.447 0.473 2e-89
DICTYBASE|DDB_G0288811 DDB_G0288811 "putative GTPase activating protein (GAP)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 816 (292.3 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
 Identities = 183/434 (42%), Positives = 270/434 (62%)

Query:   202 SIGDSPTNVN-LERTNGGLGHDSHS-ISQF-HGRQKQKAQDPARDISIQVLEKFSLVTKF 258
             S+  SPTN   L+R       D+ + ++Q     QK   ++PA+ I       F  +   
Sbjct:   385 SLSTSPTNKRALKREISSSIFDNFAKVTQLAKSAQKNIFEEPAKRID----NHFRNLIGS 440

Query:   259 ARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIVNEIPVAPDPVEFDKLT 318
                  S L  +N +N +  F+   +S S+L+    AS D  T     P     + F  + 
Sbjct:   441 KSSIGSNLSPQNANNQY--FDILNESGSSLN----ASSDYFT-----PFNISSLNFS-IE 488

Query:   319 LVWGKPRQPPLGSEEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVWAFLLGYYA 376
             L   +    P+   EW ++ D+EGR+  +N   L K+IFYGG++  +R+EVW FLLG Y+
Sbjct:   489 LGANRRECNPMSPSEWYSYFDDEGRICLANQQILLKKIFYGGIEESIRQEVWPFLLGVYS 548

Query:   377 YDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDR-SVT 435
             +DSTY+ RE ++  K  +Y+ +KRQW+SIS EQ  RF+K++ RK LI KDV+RTDR    
Sbjct:   549 FDSTYSSREVVKYEKTQQYQTVKRQWESISCEQESRFSKYQSRKLLIQKDVIRTDRLHPM 608

Query:   436 FFDGDD----NPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM---EDESQSFWC 488
             F  G+D    N N+ L+RD+LLTYSF+NFD+GY QGMSDLLSPI+ VM     E + FWC
Sbjct:   609 FIQGEDDIDSNENLRLMRDVLLTYSFFNFDIGYVQGMSDLLSPIISVMGGVSKEVECFWC 668

Query:   489 FVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQF 548
             F  LM+RL  NF++DQNGMH QL  LSKL++ +D  L+ + + N+  N +F F+ VLI F
Sbjct:   669 FKGLMDRLESNFHKDQNGMHHQLSTLSKLLKFIDLELYTHLEANNGGNMYFFFQSVLICF 728

Query:   549 KREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSG 608
             KREF +   + LWE+LW++Y++++L +++C++IL + RN+I+ E M FD +LK INE + 
Sbjct:   729 KREFPFHDVLTLWEILWSNYMTKNLPIFMCLSILIKERNQILDENMAFDQILKLINEKAN 788

Query:   609 RIDLDAILRDAEAL 622
             R+DL+ IL DAE++
Sbjct:   789 RMDLEDILVDAESM 802
GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA;ISS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1NBY5 TBC1D15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH24 TBC1D15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGI0 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC07 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNI9 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N090 TBC1D15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.8__1146__AT5G52580.1
annotation not avaliable (674 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query658
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-54
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 4e-50
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 5e-40
pfam12068210 pfam12068, DUF3548, Domain of unknown function (DU 1e-18
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  184 bits (470), Expect = 2e-54
 Identities = 76/237 (32%), Positives = 110/237 (46%), Gaps = 22/237 (9%)

Query: 355 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFT 414
              GV   LR  VW  LL     D             K  Y  + ++  +   +      
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMD---------TSADKDLYSRLLKET-APDDKSIVHQ- 49

Query: 415 KFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSP 474
                   I+KD+ RT    +FF   + P    LR +L  Y+ YN ++GYCQGM+ L +P
Sbjct: 50  --------IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAP 101

Query: 475 ILFVMEDESQSFWCFVALMERLGPNF-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQND 533
           +L VMEDE  +FWC V LMER GPNF   D +G+   L  L +LV+  D  L+ + K   
Sbjct: 102 LLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLG 161

Query: 534 CLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIM 590
                +  RW L  F RE   E  +R+W+VL+           V +A+LK +R+ ++
Sbjct: 162 ITPSLYALRWFLTLFARELPLEIVLRIWDVLFAE--GSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|192931 pfam12068, DUF3548, Domain of unknown function (DUF3548) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 658
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG1648813 consensus Uncharacterized conserved protein, conta 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
PF12068213 DUF3548: Domain of unknown function (DUF3548); Int 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.96
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.95
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.94
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.94
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.92
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.89
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.88
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.76
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.47
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.46
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 99.04
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 97.61
KOG2224781 consensus Uncharacterized conserved protein, conta 96.98
PF149611296 BROMI: Broad-minded protein 96.91
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-51  Score=423.05  Aligned_cols=301  Identities=38%  Similarity=0.764  Sum_probs=269.4

Q ss_pred             CCCHHHHHh-ccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh-cC
Q 006156          328 PLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-SI  405 (658)
Q Consensus       328 pl~~~~W~~-~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~-~~  405 (658)
                      .++..-|.. .+++.|.+-+.-+||+.+|.|||..++|++||+|||.+|...||.++|+.+...++++|+++.++-. ++
T Consensus       404 ki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysm  483 (781)
T KOG2224|consen  404 KIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSM  483 (781)
T ss_pred             hhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            456667876 7788899888889999999999999999999999999999999999999999999999999877543 66


Q ss_pred             ChHHHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhH
Q 006156          406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS  485 (658)
Q Consensus       406 ~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~a  485 (658)
                      ++++  ....|+...-.++|||.||+|+++||.+++||+.+.|+|||..|+.|||.+||-|||+|+++|.|.-.+||.++
T Consensus       484 spee--h~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqneset  561 (781)
T KOG2224|consen  484 SPEE--HIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESET  561 (781)
T ss_pred             CHHH--HHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccch
Confidence            6655  33467777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC------------------------C--C--CCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCC--
Q 006156          486 FWCFVALMERLGP------------------------N--F--NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCL--  535 (658)
Q Consensus       486 Fw~f~~lm~~~~~------------------------~--f--~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~--  535 (658)
                      ||||+++|..|.+                        |  |  .+....|..++..+++|++.+.|.+|+||++++-+  
T Consensus       562 fwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~l  641 (781)
T KOG2224|consen  562 FWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGL  641 (781)
T ss_pred             hhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchh
Confidence            9999999985421                        1  2  12235688999999999999999999999998644  


Q ss_pred             chhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHH
Q 006156          536 NYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAI  615 (658)
Q Consensus       536 ~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~l  615 (658)
                      .+.||.||++.+|+|+||-..++|||+..|++|....||+|+|+||+..+.+.++.++...||++-+|.++.+.||-+-+
T Consensus       642 ellfchrwlllcfkref~ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgeli  721 (781)
T KOG2224|consen  642 ELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELI  721 (781)
T ss_pred             hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhh
Confidence            46899999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHHHHHHHHhhccCC
Q 006156          616 LRDAEALCICAGENG  630 (658)
Q Consensus       616 L~~A~~L~~~~~e~~  630 (658)
                      |++|+.|..+..-..
T Consensus       722 lrkar~ll~qfr~lp  736 (781)
T KOG2224|consen  722 LRKARGLLHQFRLLP  736 (781)
T ss_pred             HHHHHHHHHHHhhcC
Confidence            999999988776554

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query658
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 1e-19
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-16
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 6e-15
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 3e-14
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 1e-09
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 7e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 2e-07
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 6e-07
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 45/290 (15%)
Query: 346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 405
           D + LRK   + GV  ++R   W  L GY   ++   +    R  K+ EY     Q+   
Sbjct: 40  DLDELRK-CSWPGVPREVRPITWRLLSGYLPANTERRKLTLQR--KREEYFGFIEQYYDS 96
Query: 406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH-LLRDILLTYSFYNFDLGY 464
             E+  + T +R+    I  D+ RT+  +  F     P V  +   IL  ++  +   GY
Sbjct: 97  RNEEHHQDT-YRQ----IHIDIPRTNPLIPLFQ---QPLVQEIFERILFIWAIRHPASGY 148
Query: 465 CQGMSDLLSPIL------FVMED-----------------ESQSFWCFVALMERLGPNFN 501
            QG++DL++P        +V ED                 E+ SFWC   L++ +  N+ 
Sbjct: 149 VQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYT 208
Query: 502 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 561
             Q G+  ++ AL +LV  +D  +HN+F++ +     F FRW+     RE     T+RLW
Sbjct: 209 FAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLW 268
Query: 562 EVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 606
           +     Y SE     H HLYVC A L ++R +I+ E+ DF  LL  +  L
Sbjct: 269 DT----YQSEPEGFSHFHLYVCAAFLIKWRKEILDEE-DFQGLLMLLQNL 313
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query658
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-83
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 7e-76
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-46
2qq8_A334 TBC1 domain family member 14; structural genomics 4e-42
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 7e-37
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  265 bits (678), Expect = 3e-83
 Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 43/320 (13%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
           +++   L   G   D   LR+  +  G+   +R   W  L GY   +     R      K
Sbjct: 27  DKFKQLL--AGPNTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRK 81

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           + EY      +     ++       ++    I  D+ R                 +   I
Sbjct: 82  QKEYFAFIEHYYDSRNDEV-----HQDTYRQIHIDIPRMSPEALILQ---PKVTEIFERI 133

Query: 452 LLTYSFYNFDLGYCQGMSDLLSPILFVM------------------------EDESQSFW 487
           L  ++  +   GY QG++DL++P   V                           E+ ++W
Sbjct: 134 LFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYW 193

Query: 488 CFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQ 547
           C   L++ +  N+   Q G+  ++  L +LV  +D  +H +  Q++     F FRW+   
Sbjct: 194 CMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNL 253

Query: 548 FKREFEYEKTMRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 606
             RE     T+RLW+   +      H HLYVC A L R+R +I+ E+ DF  LL F+  L
Sbjct: 254 LMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEIL-EEKDFQELLLFLQNL 312

Query: 607 SGRI----DLDAILRDAEAL 622
                   D+  +L +A  L
Sbjct: 313 PTAHWDDEDISLLLAEAYRL 332
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query658
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 95.77
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 94.6
1pfj_A108 TFIIH basal transcription factor complex P62 subun 87.67
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-50  Score=438.96  Aligned_cols=287  Identities=24%  Similarity=0.484  Sum_probs=252.5

Q ss_pred             CHHHHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHH
Q 006156          330 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ  409 (658)
Q Consensus       330 ~~~~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q  409 (658)
                      +.++|+++++.+. .++.++||+. +++|||+.+|+.||+.|+|++|.+.+  +|+...+.++..|..++++|...... 
T Consensus         7 R~~kw~~lL~~~~-~~d~~~Lr~l-~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~-   81 (396)
T 1fkm_A            7 RISKFDNILKDKT-IINQQDLRQI-SWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHS-   81 (396)
T ss_dssp             HHHHHHHHHSSCS-BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCS-
T ss_pred             HHHHHHHHHcCCC-CCCHHHHHHH-HHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCc-
Confidence            3579999998753 4789999994 67899999999999999999998754  56778888999999999987642111 


Q ss_pred             HhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhc---------
Q 006156          410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------  480 (658)
Q Consensus       410 ~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~---------  480 (658)
                           ...+..++|++||.||+|++++|+.  ..+++.|+|||.+|+.+||++||||||++|++|||+++.         
T Consensus        82 -----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~  154 (396)
T 1fkm_A           82 -----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI  154 (396)
T ss_dssp             -----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG
T ss_pred             -----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccc
Confidence                 1223457999999999999999986  457899999999999999999999999999999999862         


Q ss_pred             ---------c----------hhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHh
Q 006156          481 ---------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCF  541 (658)
Q Consensus       481 ---------d----------E~~aFw~f~~lm~~~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~  541 (658)
                               +          |++|||||++||+++..+|..++.|+...+..++.||+..+|+||+||++.++.+.+|++
T Consensus       155 ~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~  234 (396)
T 1fkm_A          155 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAF  234 (396)
T ss_dssp             GGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHH
T ss_pred             ccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence                     2          899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccccccHHHHHHHHHHHHhhc---------------------------------------------------c-
Q 006156          542 RWVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L-  569 (658)
Q Consensus       542 rW~ltlF~ref~~~~vlrLWD~~~~~~---------------------------------------------------~-  569 (658)
                      +||+++|+++||+++++||||++|+++                                                   . 
T Consensus       235 rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  314 (396)
T 1fkm_A          235 RWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVE  314 (396)
T ss_dssp             HHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999987                                                   1 


Q ss_pred             --------C-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHhhccCC
Q 006156          570 --------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG  630 (658)
Q Consensus       570 --------~-~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~----iD~~~lL~~A~~L~~~~~e~~  630 (658)
                              + ..|++|+|+|||..+|+.||+  +||++++++|+++|..    .|++.++.+|..++.....+.
T Consensus       315 ~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~  386 (396)
T 1fkm_A          315 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT  386 (396)
T ss_dssp             --------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred             cchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence                    1 479999999999999999995  5999999999999864    589999999999988876654
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 658
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 1e-28
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-13
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 7e-06
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (276), Expect = 1e-28
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 391
            ++   L ++  +++   LR+   + G+    R  VW  L+GY   ++   E    R  K
Sbjct: 8   SKFDNILKDK-TIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRK 65

Query: 392 KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 451
           +             S +              I+ D+ RT+  +  +      N   L+ I
Sbjct: 66  EYRDSLKHTFSDQHSRD--------IPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 115

Query: 452 LLTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDES 483
           L  ++  +   GY QG++DL++P                                 + E+
Sbjct: 116 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175

Query: 484 QSFWCFVALMERLGPNF 500
            +FWC   L+E++  N+
Sbjct: 176 DTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query658
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.82
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 96.4
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 94.09
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 92.84
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.7e-31  Score=256.36  Aligned_cols=158  Identities=23%  Similarity=0.464  Sum_probs=132.3

Q ss_pred             HHHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHh
Q 006156          332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR  411 (658)
Q Consensus       332 ~~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~  411 (658)
                      ++|..++.+ ..+++.++||+ ++++|||+++|+.||+.|||++|.+++.  ++....++++.|..+..++......   
T Consensus         8 ~~~~~~l~~-~~~i~~~~lr~-l~~~Gip~~lR~~vW~~llg~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~~---   80 (194)
T d1fkma1           8 SKFDNILKD-KTIINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTKR--QEGFLQRKRKEYRDSLKHTFSDQHS---   80 (194)
T ss_dssp             HHHHHHHSS-CSBCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGGG--HHHHHHHHHHHHHHHHHHTSSSSCS---
T ss_pred             HHHHHHhcc-cCCCCHHHHHH-HHHcCCChHHHHHHHHHHHhhcCCchhh--HHHHHHHHhhhhhhhhhhhhhcccc---
Confidence            678888765 56789999998 4589999999999999999999988764  4556678888888887765433222   


Q ss_pred             hhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcc----------
Q 006156          412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------  481 (658)
Q Consensus       412 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~d----------  481 (658)
                         ...+..++|++||.||+|++++|..  .++++.|+|||.+|+.+||++||||||++|||||++++.+          
T Consensus        81 ---~~~~~~~~I~~Dv~RT~~~~~~f~~--~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~  155 (194)
T d1fkma1          81 ---RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD  155 (194)
T ss_dssp             ---THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGG
T ss_pred             ---cchHHHHHHHHHHHhcCCccccccc--chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhh
Confidence               2234467999999999999999985  4678999999999999999999999999999999998732          


Q ss_pred             ------------------hhhHHHHHHHHHHHhCCCCC
Q 006156          482 ------------------ESQSFWCFVALMERLGPNFN  501 (658)
Q Consensus       482 ------------------E~~aFw~f~~lm~~~~~~f~  501 (658)
                                        |++|||||+++|+++.++|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         156 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             TTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                              88999999999999988874
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure