Citrus Sinensis ID: 006160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
Protein Sequence
MLQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEcccccccccccEEEEEccccccccccccEEcccccccccEEEEEEEEccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEEEEcccccHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEEEcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEcccccEEcccEEEEEEcccccccccccEEEEccccccccEEEEEEEEccHHHHHHHHHHccccccccccccccccccccccEEEEccccccHHHccEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccEEEEEEcccccHHHHHHHHccccccccccEEEEEcccccccHHHHHcEEEEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEEEEcccHHHHHHHHHHHHccccccccccEEEEEEEEEEcccccccccccccEEEEEEcccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccHccccccHHHHccccEEEccccccHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHcccHHcccccEEEEEcccccc
Coil and Loop (DISEMBL)
MLQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDvlsasclpcgtvelvlskpanlryNALSFFFLQVRELswlqwhpfsvsssplegkyhSSVLIKVLGEWTENLRDYILSksesdsqvgppppvpppeghpppvhppqgpvrnlMYENLILVAGgiseanphvgpplpvpppqgapppgpplqeegpppqgphppvpppqgpppplpppkgnlmyENLIVVAGgisetepqvgppppvpppqgsppqrpppsrhpllpptkitasvegpyghevpyHLMYENLILVAGGIGISPFLAILSDILHRInegksclprnVLIVWAVKKSNELSLLSNfykesicpffsdklnLETFIYVtreteppleegelhktmsssiypvpsgcAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILyvnpfnihSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWErkssarenykddsievdnaqnvgtmahndirkkdtksstnilygsrpdfkeifgstskkwghvdvgvivcgppslqssVAKEIrshslmrechdpifhfhshsfdl
Flexible Loop (DISEMBL)
MLQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTREteppleegelHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKddsievdnaqnvgtmahndirkkdtksstnilygsrPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Low Complexity Region (SEG)
MLQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGiflfildrflrfCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSqvgppppvpppeghpppvhppqgpvRNLMYENLILVAGGISEANphvgpplpvpppqgapppgpplqeegpppqgphppvpppqgpppplpppKGNLMYENLIVVAGGISETEpqvgppppvpppqgsppqrpppsrhpllppTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered region (IsUnstruct)
****TMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVF******IFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL*********************************NLMYENLILVAGGI********************************************************LMYENLIVVAGG****************************************SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR*****************SIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWER***************************************ILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS*************LMRECHDPIFHF*******
Disordered Region (DISOPRED)
*LQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYI***************VPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET*********************PPS*HPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR***********************************NNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLW************************************KSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered Region (DISEMBL)
MLQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS**************PEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP*****************************PPPPLPPPKGNLMYENLIVVAGGISET************************RHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered Region (DISPRO)
MLQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA**********************PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARE****************TMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF*L
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	658	2.2.26 [Sep-21-2011]
Q8RWS6	738	Ferric reduction oxidase	yes	no	0.522	0.466	0.535	1e-105
Q3KTM0	747	Ferric reduction oxidase	no	no	0.524	0.461	0.534	1e-104
Q9LMM2	704	Probable ferric reduction	no	no	0.325	0.303	0.410	1e-38
F4I4K7	717	Ferric reduction oxidase	no	no	0.320	0.294	0.406	1e-38
P92949	725	Ferric reduction oxidase	no	no	0.306	0.278	0.382	4e-37
Q8VY13	728	Ferric reduction oxidase	no	no	0.341	0.309	0.385	4e-36
Q9FLW2	707	Ferric reduction oxidase	no	no	0.334	0.311	0.376	7e-35
Q8W110	699	Ferric reduction oxidase	no	no	0.334	0.314	0.376	6e-34
O81211	952	Respiratory burst oxidase	no	no	0.231	0.159	0.329	1e-15
Q9SW17	849	Putative respiratory burs	no	no	0.205	0.159	0.337	1e-14

>sp|Q8RWS6|FRO6_ARATH Ferric reduction oxidase 6 OS=Arabidopsis thaliana GN=FRO6 PE=2 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/368 (53%), Positives = 253/368 (68%), Gaps = 24/368 (6%)

Query: 301 PPKGNLMYENLIVVAGG-ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359
           P  GN     LI V GG  ++   Q+           +  Q   P  +P     KIT  V
Sbjct: 385 PLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAE----NQDQLISPQSYP-----KITTCV 435

Query: 360 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 419
           EGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+VWA+K S
Sbjct: 436 EGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVVWAIKNS 495

Query: 420 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCA 478
           +ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P  +GC+
Sbjct: 496 DELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLPRTNGCS 555

Query: 479 MSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVL 538
           MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ CMV  VL
Sbjct: 556 MSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGCMVASVL 615

Query: 539 IFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSS 590
           IFGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ 
Sbjct: 616 IFGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNY 670

Query: 591 TNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFH 650
           T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FH
Sbjct: 671 TTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFH 730

Query: 651 FHSHSFDL 658
           F+SHSFDL
Sbjct: 731 FNSHSFDL 738

Ferric chelate reductase involved in iron uptake by shoot and leaf cells. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 6EC: .EC: 1EC: .EC: 7

>sp|Q3KTM0|FRO7_ARATH Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/367 (53%), Positives = 251/367 (68%), Gaps = 22/367 (5%)

Query: 301 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360
           P  GN     LI V GG +    ++           +  Q   P  +P     KIT  VE
Sbjct: 394 PLDGNHHVAVLIKVLGGWT---AKLRDQLSTLYEAENQDQLISPESYP-----KITTCVE 445

Query: 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN 420
           GPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK CLP  VL+VWA+K S+
Sbjct: 446 GPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKDCLPGKVLVVWAIKNSD 505

Query: 421 ELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCAM 479
           ELSLLS     SIC FFS KLNLE  IYVTR++EP LE+G +HK +  S+  P  +GC+M
Sbjct: 506 ELSLLSAIDIPSICHFFSKKLNLEIHIYVTRQSEPCLEDGMVHKVVHPSVKTPWTNGCSM 565

Query: 480 SVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLI 539
           SVLVGTG+N+WSGLY+I ST+GFI ++ L++I Y+N +NI +WWYKGLLF+ CMV  VLI
Sbjct: 566 SVLVGTGDNIWSGLYLIISTIGFIAMITLVDIFYINKYNITTWWYKGLLFVVCMVASVLI 625

Query: 540 FGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSST 591
           FGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ T
Sbjct: 626 FGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNYT 680

Query: 592 NILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHF 651
            I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FHF
Sbjct: 681 TIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFHF 740

Query: 652 HSHSFDL 658
           +SHSFDL
Sbjct: 741 NSHSFDL 747

Ferric chelate reductase involved in iron mobilization from the cytosol into the chloroplast. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. Might be involved iron homeostasis in trichomes.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9LMM2|FRO1_ARATH Probable ferric reduction oxidase 1 OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  161 bits (408), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 137/229 (59%), Gaps = 15/229 (6%)

Query: 23  FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQL 82
           + I W  + +LV ++L W    ++N  G I+L+AGLMMW T++  +R+  F++FFY+H L
Sbjct: 227 YFIYWISKNQLVSKMLEWDRTAVSNLAGEIALVAGLMMWVTTYPKIRRRLFEVFFYSHYL 286

Query: 83  YVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLS 142
           Y+VF++F   HVG     +   G ++F++DRFLRF QSR  V ++SA  LPC TVEL  S
Sbjct: 287 YIVFMLFFVFHVGISHALIPLPGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNFS 346

Query: 143 KPANLRYNALSFFFLQVRELSWLQWHPFS-VSSSPLEGKYHSSVLIKVLGEWTENLRDYI 201
           K   L Y+  S  F+ +  +S LQWHPF+ +SSS LE +   SV+IK  G+W+  L D +
Sbjct: 347 KNPMLMYSPTSTMFVNIPSISKLQWHPFTIISSSKLEPE-TLSVMIKSQGKWSTKLYD-M 404

Query: 202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRN--LMYENLILVAGG 248
           LS S SD Q+               V  P GP     L +E+L++V+GG
Sbjct: 405 LSSSSSD-QINRL---------AVSVEGPYGPSSTDFLRHESLVMVSGG 443

Ferric chelate reductase involved in iron reduction in roots (By similarity). May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|F4I4K7|FRO3_ARATH Ferric reduction oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=FRO3 PE=2 SV=1

 Score =  161 bits (408), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/229 (40%), Positives = 135/229 (58%), Gaps = 18/229 (7%)

Query: 23  FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQL 82
           + I W I    V ++L W   GI++  G I+L+AGL+MWAT+F  +R+ FF++FFYTH L
Sbjct: 251 YCIYW-ISTNQVSQMLEWDRTGISHLAGEIALVAGLLMWATTFPAIRRRFFEVFFYTHYL 309

Query: 83  YVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLS 142
           Y+VF++F   HVG     ++  G ++F++DRFLRF QSR  V ++SA  LPC TVEL  S
Sbjct: 310 YMVFMLFFVFHVGISYALISFPGFYIFMVDRFLRFLQSRNNVKLVSARVLPCETVELNFS 369

Query: 143 KPANLRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDYI 201
           K   L Y+  S  F+ +  +S LQWHPF++ SSS LE K   SV+IK  G+W+  L   +
Sbjct: 370 KNPMLMYSPTSILFVNIPSISKLQWHPFTITSSSKLEPK-KLSVMIKSQGKWSSKLHHML 428

Query: 202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRN--LMYENLILVAGG 248
            S ++ D                  V  P GP     L +++L++V+GG
Sbjct: 429 ASSNQIDHL-------------AVSVEGPYGPASTDYLRHDSLVMVSGG 464

Ferric chelate reductase involved in iron reduction in roots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|P92949|FRO2_ARATH Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2

 Score =  157 bits (396), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 15/217 (6%)

Query: 34  VQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALH 93
           + +++ W   G++N  G I+L AGL+MWAT++  +R+ FF++FFYTH LY+VF++F  LH
Sbjct: 247 ISQMIMWDTKGVSNLAGEIALAAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVLH 306

Query: 94  VGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALS 153
           VG     +A  G ++F++DRFLRF QSR  V +L+A  LP  T+EL  SK + L Y+  S
Sbjct: 307 VGISFSFIALPGFYIFLVDRFLRFLQSRENVRLLAARILPSDTMELTFSKNSKLVYSPTS 366

Query: 154 FFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGP 213
             F+ +  +S LQWHPF+++SS        S++IK  G+W+  L   + S  + D     
Sbjct: 367 IMFVNIPSISKLQWHPFTITSSSKLEPEKLSIVIKKEGKWSTKLHQRLSSSDQIDRL--- 423

Query: 214 PPPVPPPEGHPPPVHPPQGPVRN--LMYENLILVAGG 248
                        V  P GP     L +E L++V GG
Sbjct: 424 ----------AVSVEGPYGPASADFLRHEALVMVCGG 450

Flavocytochrome that transfers electrons across the plasma membrane to reduce ferric iron chelates to form soluble ferrous iron in the rhizosphere. May be involved in the delivery of iron to developing pollen grains. Acts also as a copper-chelate reductase. Involved in glycine betaine-mediated chilling tolerance and reactive oxygen species accumulation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8VY13|FRO8_ARATH Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1

 Score =  153 bits (387), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 16  SLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQL 75
           SL   G  +  W I   + +E+  W+  G     G+ISL+ GL+MW TS   +R+  F++
Sbjct: 206 SLVHGGSTLFIWTITHHIEEEIWKWQRTGRVYVAGLISLVTGLLMWITSLPQIRRKNFEV 265

Query: 76  FFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCG 135
           F+YTH LY+VF+V    H GD  F     G+FLF LD+ LR  QSR    +LSA+   C 
Sbjct: 266 FYYTHHLYIVFLVAFLFHAGDRHFYWVLPGMFLFGLDKILRIVQSRSESCILSANLFSCK 325

Query: 136 TVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTE 195
            +ELVL K   L Y   SF FL +  +S  QWHPFS+ SS    K+  S+++K  G+WT 
Sbjct: 326 AIELVLPKDPMLNYAPSSFIFLNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTN 385

Query: 196 NLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGP--VRNLMYENLILVAGGI 249
           ++ + I   +  ++++     +   EG       P GP  V  L Y+NL LVAGGI
Sbjct: 386 SVYNKIEEAANCENKIN--NIIVRVEG-------PYGPASVDFLRYDNLFLVAGGI 432

Ferric chelate reductase probably involved in iron reduction in leaf veins for transport. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9FLW2|FRO5_ARATH Ferric reduction oxidase 5 OS=Arabidopsis thaliana GN=FRO5 PE=2 SV=1

 Score =  149 bits (376), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 125/234 (53%), Gaps = 14/234 (5%)

Query: 15  CSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQ 74
           C L  T  F+I W +  +L+ E  AW    + N  G I+++ G+ +W TS    R+  F+
Sbjct: 210 CFLVHTVVFLIYWAMVNKLM-ETFAWNATYVPNLAGTIAMVIGIAIWVTSLPSFRRKKFE 268

Query: 75  LFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPC 134
           +FFYTH LY +++VF A+HVGD  F M    IFLF +DR+LRF QS +   ++SA  LP 
Sbjct: 269 IFFYTHHLYGLYIVFYAIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSAKILPS 328

Query: 135 GTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWT 194
             +EL  +K + L Y   S  FL V  +S LQWHPF+++SS    K   SV+I+  G WT
Sbjct: 329 DNLELTFAKTSGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRKQGSWT 388

Query: 195 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGG 248
           + L  + LS S    +V    P  P                   +++LILV GG
Sbjct: 389 QKLYTH-LSSSIDSLEVSTEGPYGPNSFDVSR------------HDSLILVGGG 429

Ferric chelate reductase probably involved in iron reduction in shoots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. May act in iron metabolism in reproductive organs.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8W110|FRO4_ARATH Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 123/234 (52%), Gaps = 14/234 (5%)

Query: 15  CSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQ 74
           C L  T  F+I W +  +L+ E  AW    + N  G I+++ G+ MW TS    R+  F+
Sbjct: 202 CFLVHTVVFLIYWAMINKLM-ETFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRKKFE 260

Query: 75  LFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPC 134
           +FFYTH LY +++VF  +HVGD  F M    IFLF +DR+LRF QS +   ++SA  LP 
Sbjct: 261 IFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSARILPS 320

Query: 135 GTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWT 194
             +EL  SK   L Y   S  FL V  +S +QWHPF+++SS    K   SV+I+  G WT
Sbjct: 321 DNLELTFSKTPGLHYTPTSILFLHVPSISKIQWHPFTITSSSNLEKDTLSVVIRRQGSWT 380

Query: 195 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGG 248
           + L  + LS S    +V    P  P                   + +LILV+GG
Sbjct: 381 QKLYTH-LSSSIDSLEVSTEGPYGPNSFDVSR------------HNSLILVSGG 421

Ferric chelate reductase. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 24/176 (13%)

Query: 44  GIANFPGVISLLAGLMMWATSFHPVRKHF---------FQLFFYTHQLYVVFVVFLALHV 94
           GI     VI       + +T F   R            F  F+YTH L VV  + L +H 
Sbjct: 531 GITGISMVILTTIAFTLASTHFRRNRVRLPAPLDRLTGFNAFWYTHHLLVVVYIMLIVH- 589

Query: 95  GDFVF-----------SMAAGGIFLFILDRFLRFCQSRR-TVDVLSASCLPCGTVELVLS 142
           G F+F              +  + L++ +R LR C+S+  +V +L  S LP   + L++S
Sbjct: 590 GTFLFFADKWYQKTTWMYISVPLVLYVAERSLRACRSKHYSVKILKVSMLPGEVLSLIMS 649

Query: 143 KPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 198
           KP   +Y +  + FLQ   +S  +WHPFS++S+P  G    SV I+ LG+WTE LR
Sbjct: 650 KPPGFKYKSGQYIFLQCPTISRFEWHPFSITSAP--GDDQLSVHIRTLGDWTEELR 703

Calcium-dependent NADPH oxidase that generates superoxide.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q9SW17|RBOHG_ARATH Putative respiratory burst oxidase homolog protein G OS=Arabidopsis thaliana GN=RBOHG PE=2 SV=2

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 22/157 (14%)

Query: 73  FQLFFYTHQLYVVFVVFLALHVGDFVF-----------SMAAGGIFLFILDRFLR-FCQS 120
           F  F+YTH L+V+  + L LH G +++              A  + L+  +R +R F  S
Sbjct: 484 FNAFWYTHHLFVIVYILLVLH-GYYIYLNKEWYKKTTWMYLAVPVALYAYERLIRAFRSS 542

Query: 121 RRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGK 180
            RTV VL  +  P   + L +SKP N +Y +  + F+    +S  +WHPFS++S+P +  
Sbjct: 543 IRTVKVLKMAAYPGKVLTLQMSKPTNFKYMSGQYMFVNCPAVSPFEWHPFSITSTPQDD- 601

Query: 181 YHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPV 217
            + SV IK LG+WTE ++          S+V  PPPV
Sbjct: 602 -YLSVHIKALGDWTEAIQGVF-------SEVSKPPPV 630

Calcium-dependent NADPH oxidase that generates superoxide.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
255556713	735	ferric-chelate reductase, putative [Rici	0.534	0.478	0.612	1e-124
359486141	735	PREDICTED: ferric reduction oxidase 7, c	0.472	0.423	0.663	1e-122
297739426	735	unnamed protein product [Vitis vinifera]	0.472	0.423	0.663	1e-122
224057952	734	predicted protein [Populus trichocarpa]	0.463	0.415	0.660	1e-118
357448309	740	NADPH oxidase [Medicago truncatula] gi|8	0.465	0.413	0.663	1e-116
356555827	732	PREDICTED: probable ferric reductase tra	0.458	0.412	0.651	1e-113
356532942	734	PREDICTED: uncharacterized protein LOC10	0.436	0.391	0.644	1e-105
449431912	740	PREDICTED: ferric reduction oxidase 7, c	0.460	0.409	0.598	1e-105
22327672	738	ferric reduction oxidase 6 [Arabidopsis	0.522	0.466	0.535	1e-103
8978270	721	FRO2-like protein; NADPH oxidase-like [A	0.522	0.477	0.535	1e-103

>gi|255556713|ref|XP_002519390.1| ferric-chelate reductase, putative [Ricinus communis] gi|223541457|gb|EEF43007.1| ferric-chelate reductase, putative [Ricinus communis]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/359 (61%), Positives = 264/359 (73%), Gaps = 7/359 (1%)

Query: 300 PPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359
            P  G      LI V G    TE   G        + +  Q  P   HP     KITA V
Sbjct: 384 SPLDGKYHLTILIKVLG--KWTEKLRGNVKNRSEAEVAELQDQPSQPHP-----KITACV 436

Query: 360 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 419
           EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSD+LHRINE ++CLP+N+L+ WA+KKS
Sbjct: 437 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDVLHRINEERACLPKNILVTWAIKKS 496

Query: 420 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAM 479
           +EL LLS    ESICP+FSDKLNLE  IYVTRET   LEEG +HK  +SS+     GC M
Sbjct: 497 SELPLLSTIDMESICPYFSDKLNLEVHIYVTRETYAQLEEGLVHKATNSSVITSSKGCGM 556

Query: 480 SVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLI 539
           SVLVGTG+N+WSGLYVI S++GF+IL+ L+++ Y+N + IHSWWYKGLLF+ACMV  +L+
Sbjct: 557 SVLVGTGDNIWSGLYVIISSMGFVILLGLVDVYYINEYGIHSWWYKGLLFIACMVVSILV 616

Query: 540 FGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRP 599
           FGG V+G WHLWE K SA E  KD+ ++    +N   +A+ D+  K+  SST I YGSRP
Sbjct: 617 FGGCVVGLWHLWEMKMSALEENKDNGLKTREVKNNENVANKDLYGKNYASSTMIQYGSRP 676

Query: 600 DFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL 658
           DFKEIFGS SK+WGHVDVGVIVCGPP+L +SVA+EIRS +L RE HDP+FH+HSHSFDL
Sbjct: 677 DFKEIFGSISKRWGHVDVGVIVCGPPNLGTSVAREIRSQNLRRESHDPVFHYHSHSFDL 735

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486141|ref|XP_002266723.2| PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 256/312 (82%), Gaps = 1/312 (0%)

Query: 348 PLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLP 407
           P  P +KITASVEGPYGHE PYHLMYENL+LVAGGIGISPFLAILSDILH   E K+CLP
Sbjct: 424 PFQPHSKITASVEGPYGHESPYHLMYENLVLVAGGIGISPFLAILSDILHSARENKTCLP 483

Query: 408 RNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMS 467
           RN+LI+WA+KKSNELSLLS    ESICP FSDK+N+E  IYVTRE+EPPLEEG+++KT++
Sbjct: 484 RNILIIWAIKKSNELSLLSTVDMESICPSFSDKVNIEIQIYVTRESEPPLEEGKINKTVN 543

Query: 468 SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGL 527
           SS++PV SG  +SVLVGTGNN+WSG+YVI   +GF++ + LLNI Y+NPF I+SWWYKGL
Sbjct: 544 SSVFPVLSGRGLSVLVGTGNNIWSGIYVILPVLGFVLFMDLLNIYYINPFGINSWWYKGL 603

Query: 528 LFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV-GTMAHNDIRKKD 586
           LF+ CMV  V+IFGG V+GFWHLWER+ S  E  +D+ +++   Q++ G+M   +  ++ 
Sbjct: 604 LFVLCMVASVVIFGGAVVGFWHLWERRISESEELEDNQMKIGMVQHINGSMEDKESSQES 663

Query: 587 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHD 646
              ++ I YG RPDFKEIFGS S++WGHVDVGVIVCGPP+LQ+SVAKE RS ++ R CHD
Sbjct: 664 LAGTSTIQYGCRPDFKEIFGSISERWGHVDVGVIVCGPPTLQASVAKECRSQNIRRRCHD 723

Query: 647 PIFHFHSHSFDL 658
           PIFHF+SHSFDL
Sbjct: 724 PIFHFNSHSFDL 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739426|emb|CBI29608.3| unnamed protein product [Vitis vinifera]

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 256/312 (82%), Gaps = 1/312 (0%)

Query: 348 PLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLP 407
           P  P +KITASVEGPYGHE PYHLMYENL+LVAGGIGISPFLAILSDILH   E K+CLP
Sbjct: 424 PFQPHSKITASVEGPYGHESPYHLMYENLVLVAGGIGISPFLAILSDILHSARENKTCLP 483

Query: 408 RNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMS 467
           RN+LI+WA+KKSNELSLLS    ESICP FSDK+N+E  IYVTRE+EPPLEEG+++KT++
Sbjct: 484 RNILIIWAIKKSNELSLLSTVDMESICPSFSDKVNIEIQIYVTRESEPPLEEGKINKTVN 543

Query: 468 SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGL 527
           SS++PV SG  +SVLVGTGNN+WSG+YVI   +GF++ + LLNI Y+NPF I+SWWYKGL
Sbjct: 544 SSVFPVLSGRGLSVLVGTGNNIWSGIYVILPVLGFVLFMDLLNIYYINPFGINSWWYKGL 603

Query: 528 LFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV-GTMAHNDIRKKD 586
           LF+ CMV  V+IFGG V+GFWHLWER+ S  E  +D+ +++   Q++ G+M   +  ++ 
Sbjct: 604 LFVLCMVASVVIFGGAVVGFWHLWERRISESEELEDNQMKIGMVQHINGSMEDKESSQES 663

Query: 587 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHD 646
              ++ I YG RPDFKEIFGS S++WGHVDVGVIVCGPP+LQ+SVAKE RS ++ R CHD
Sbjct: 664 LAGTSTIQYGCRPDFKEIFGSISERWGHVDVGVIVCGPPTLQASVAKECRSQNIRRRCHD 723

Query: 647 PIFHFHSHSFDL 658
           PIFHF+SHSFDL
Sbjct: 724 PIFHFNSHSFDL 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057952|ref|XP_002299406.1| predicted protein [Populus trichocarpa] gi|222846664|gb|EEE84211.1| predicted protein [Populus trichocarpa]

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/315 (66%), Positives = 250/315 (79%), Gaps = 10/315 (3%)

Query: 348 PLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLP 407
           P  P  KITASVEGPYGHE PYHLMYENLILVAGGIGISPFLAILSDILHR+NEG+ CLP
Sbjct: 426 PSQPRPKITASVEGPYGHEAPYHLMYENLILVAGGIGISPFLAILSDILHRVNEGRPCLP 485

Query: 408 RNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMS 467
           RN+LIVWAVK+SNEL LLS    ESICP+F DKLNLE  IYVTRE++PPLEEG++H    
Sbjct: 486 RNILIVWAVKRSNELPLLSTMDLESICPYFYDKLNLEISIYVTRESDPPLEEGDIHNVTV 545

Query: 468 SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGL 527
           SS+ P+  GC MSVLVGTG+++WSGLYVISSTVGF+I + +L I Y+NP +I +WWYKGL
Sbjct: 546 SSVCPMSKGCGMSVLVGTGDSIWSGLYVISSTVGFVISLGILYIFYINPCSISTWWYKGL 605

Query: 528 LFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHND----IR 583
           LF  CM+  V+IFGG V+G WHLWE+K SARE Y+      +N    G + HN+    + 
Sbjct: 606 LFFGCMLASVVIFGGLVVGLWHLWEKKISAREEYE------ENRLKPGMVQHNEDAVNLF 659

Query: 584 KKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRE 643
           +K+  S T I YGSRPDFK+IFGS S+ WG+ DVGVI+CGPP+L++SVA+EIRS +L RE
Sbjct: 660 QKNHTSITTIQYGSRPDFKDIFGSISEHWGYADVGVIICGPPTLETSVAREIRSRNLKRE 719

Query: 644 CHDPIFHFHSHSFDL 658
            H P+FHFHSH+FDL
Sbjct: 720 SHHPVFHFHSHAFDL 734

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448309|ref|XP_003594430.1| NADPH oxidase [Medicago truncatula] gi|87241054|gb|ABD32912.1| Ferric reductase-like transmembrane component [Medicago truncatula] gi|355483478|gb|AES64681.1| NADPH oxidase [Medicago truncatula]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/309 (66%), Positives = 249/309 (80%), Gaps = 3/309 (0%)

Query: 351 PPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 410
           P   +TASVEGPYGHEVPYHLMYENLILVAGGIG+SPFLAILSDILHR+ EGK C PRN+
Sbjct: 434 PHMVVTASVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVREGKPCRPRNI 493

Query: 411 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI 470
           LIVWAVKKSNEL LLS    E+ICP FSDK+N+   I+VTRE++PPLEEG  +K + S  
Sbjct: 494 LIVWAVKKSNELPLLSTVDMETICPCFSDKVNINVHIFVTRESDPPLEEGYNYKPIKSLC 553

Query: 471 -YPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLF 529
            +P+PS   MS LVGTGNN WSGLYVISST+GF+IL+ALLNI Y+NP  +  WWYKGLL 
Sbjct: 554 PFPMPSDYGMSGLVGTGNNFWSGLYVISSTLGFVILLALLNIYYINPVGVVIWWYKGLLL 613

Query: 530 LACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKS 589
           + CMV  V+IFGG V+GFW++WE++SS ++  K ++I+VD  +  G++ H D+ + +   
Sbjct: 614 VVCMVASVVIFGGIVVGFWNMWEKQSSLKD--KSNNIKVDKIEQNGSVDHKDLTQYNIAK 671

Query: 590 STNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIF 649
            T I YGSRPDFKEIF S S+KWGHVDVG++VCGPP+LQSSVA+EIRSHSL R+ + PIF
Sbjct: 672 LTTIRYGSRPDFKEIFESMSEKWGHVDVGILVCGPPTLQSSVAQEIRSHSLTRQPYHPIF 731

Query: 650 HFHSHSFDL 658
           HFHSHSFDL
Sbjct: 732 HFHSHSFDL 740

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555827|ref|XP_003546231.1| PREDICTED: probable ferric reductase transmembrane component-like [Glycine max]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/304 (65%), Positives = 242/304 (79%), Gaps = 2/304 (0%)

Query: 355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 414
           IT SVEGPYGHEVPYHLMYENLILVAGGIG+SPFLAILSDILHR+ EGK C  RN+L+VW
Sbjct: 431 ITTSVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVREGKPCQSRNILLVW 490

Query: 415 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 474
           AVKKSNEL LLS    +SICP FSDK+N++  IYVTRE++PP+EEG  +K + SS  P+ 
Sbjct: 491 AVKKSNELPLLSTIDMQSICPSFSDKVNIDIHIYVTRESDPPVEEGYSYKPIKSSFCPMA 550

Query: 475 SGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMV 534
           S C MSVLVGTG+NVWSGLYVISSTVGF+IL+ALL + Y+ PF+I +WWYKGLL++ CMV
Sbjct: 551 SDCGMSVLVGTGDNVWSGLYVISSTVGFVILLALLYVYYIAPFHIETWWYKGLLYVICMV 610

Query: 535 GGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNIL 594
             V+IFGG+V+  WH+WE+++S ++N  D   +VD     G++      +     ST I 
Sbjct: 611 ASVVIFGGSVVAMWHIWEKQNSLKDNSNDT--KVDKIHQNGSLTPKAPSQVSIAKSTVIR 668

Query: 595 YGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSH 654
           YGSRPDFKEI+ S S+KWG VDVG+IVCGP +LQ+SVA+EIRSHS+ R+ H PIFHFHSH
Sbjct: 669 YGSRPDFKEIYESMSEKWGLVDVGIIVCGPSTLQTSVAEEIRSHSMTRQRHHPIFHFHSH 728

Query: 655 SFDL 658
           SFDL
Sbjct: 729 SFDL 732

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532942|ref|XP_003535028.1| PREDICTED: uncharacterized protein LOC100804994 [Glycine max]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/290 (64%), Positives = 232/290 (80%), Gaps = 3/290 (1%)

Query: 355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 414
           IT SVEGPYGHEVPYHLMYENLILVAGGIG+SPFLAILSDILHR+ EGK C PRN+L+VW
Sbjct: 432 ITTSVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVREGKPCQPRNILLVW 491

Query: 415 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 474
           AVKKSNEL LLS    ESICP FS+K+N++  IYVTRE++PPLEEG  +K + SS  P+ 
Sbjct: 492 AVKKSNELPLLSTIDMESICPSFSNKVNIDIHIYVTRESDPPLEEGYSYKPIKSSFCPMA 551

Query: 475 SGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMV 534
           S C MSVLVGTG+N WSGLYVISSTVGF+IL+ALL + YV PF+I +WWY+GLL++ CMV
Sbjct: 552 SDCGMSVLVGTGDNFWSGLYVISSTVGFVILLALLYVYYVTPFHIETWWYRGLLYVICMV 611

Query: 535 GGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDT-KSSTNI 593
             V+IFGG+V+  WH+WE+++S ++  K +  +VD     G++A  D  +  +   ST I
Sbjct: 612 ASVVIFGGSVVAMWHIWEKQNSLKD--KSNDTKVDKIHQNGSLATKDQSQDSSIAKSTVI 669

Query: 594 LYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRE 643
            YGSRP+FKEI+ S S+KWG VDVGVIVCGP +LQ+SVA+EIRSHS+ R+
Sbjct: 670 HYGSRPNFKEIYDSISEKWGLVDVGVIVCGPSTLQTSVAEEIRSHSMTRQ 719

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431912|ref|XP_004133744.1| PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Cucumis sativus]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 231/306 (75%), Gaps = 3/306 (0%)

Query: 355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 414
           +T SVEGPYGHE PYHLMYENLILVAGGIGISPFLAILSD+LHRI +GK+CLP+ +L+VW
Sbjct: 436 MTVSVEGPYGHESPYHLMYENLILVAGGIGISPFLAILSDVLHRIRDGKTCLPKKILVVW 495

Query: 415 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 474
           A+K S+EL LLS    +SICPFF+DKLN++  IYVTR+++PP  EGE+  +  SSI P+ 
Sbjct: 496 AIKTSDELPLLSTLNVDSICPFFADKLNIDISIYVTRQSQPP-SEGEIQGSKVSSICPLS 554

Query: 475 SGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMV 534
            G  MSVLVGTG+NVWSGLYVI ST+G + LV  +++ Y+NPF+I  WWYKGLLFL CMV
Sbjct: 555 KGSNMSVLVGTGDNVWSGLYVIFSTLGLVFLVGFMDLFYINPFHIIKWWYKGLLFLLCMV 614

Query: 535 GGVLIFGGTVIGFWHLWERKSSAR--ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTN 592
             V++FGG V+  W LWE+  S++   ++ +D   VD      + A  D+      +ST 
Sbjct: 615 ASVVLFGGLVVALWSLWEQYISSKGTSDHNNDIENVDEESPKHSFAQKDLNSNALATSTT 674

Query: 593 ILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFH 652
           I YG RP+F+EI GS S+ WG VD+GV++CGP +LQSSVAK IRSH++ R  H PIFHFH
Sbjct: 675 IEYGLRPNFEEILGSVSENWGKVDIGVLICGPSTLQSSVAKAIRSHNMGRRSHHPIFHFH 734

Query: 653 SHSFDL 658
           SHSFDL
Sbjct: 735 SHSFDL 740

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327672|ref|NP_199784.2| ferric reduction oxidase 6 [Arabidopsis thaliana] gi|75158747|sp|Q8RWS6.1|FRO6_ARATH RecName: Full=Ferric reduction oxidase 6; Short=AtFRO6; AltName: Full=Ferric-chelate reductase 6 gi|20268772|gb|AAM14089.1| putative FRO2; NADPH oxidase [Arabidopsis thaliana] gi|21281012|gb|AAM45050.1| putative FRO2; NADPH oxidase [Arabidopsis thaliana] gi|332008468|gb|AED95851.1| ferric reduction oxidase 6 [Arabidopsis thaliana]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/368 (53%), Positives = 253/368 (68%), Gaps = 24/368 (6%)

Query: 301 PPKGNLMYENLIVVAGG-ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359
           P  GN     LI V GG  ++   Q+           +  Q   P  +P     KIT  V
Sbjct: 385 PLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAE----NQDQLISPQSYP-----KITTCV 435

Query: 360 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 419
           EGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+VWA+K S
Sbjct: 436 EGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVVWAIKNS 495

Query: 420 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCA 478
           +ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P  +GC+
Sbjct: 496 DELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLPRTNGCS 555

Query: 479 MSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVL 538
           MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ CMV  VL
Sbjct: 556 MSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGCMVASVL 615

Query: 539 IFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSS 590
           IFGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ 
Sbjct: 616 IFGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNY 670

Query: 591 TNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFH 650
           T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FH
Sbjct: 671 TTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFH 730

Query: 651 FHSHSFDL 658
           F+SHSFDL
Sbjct: 731 FNSHSFDL 738

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8978270|dbj|BAA98161.1| FRO2-like protein; NADPH oxidase-like [Arabidopsis thaliana]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/368 (53%), Positives = 253/368 (68%), Gaps = 24/368 (6%)

Query: 301 PPKGNLMYENLIVVAGG-ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359
           P  GN     LI V GG  ++   Q+           +  Q   P  +P     KIT  V
Sbjct: 368 PLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAE----NQDQLISPQSYP-----KITTCV 418

Query: 360 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS 419
           EGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+VWA+K S
Sbjct: 419 EGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVVWAIKNS 478

Query: 420 NELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YPVPSGCA 478
           +ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P  +GC+
Sbjct: 479 DELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLPRTNGCS 538

Query: 479 MSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVL 538
           MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ CMV  VL
Sbjct: 539 MSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGCMVASVL 598

Query: 539 IFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHN----DIR----KKDTKSS 590
           IFGG V+ FWH WE K+   E   +D ++++     G   HN    +++    ++D ++ 
Sbjct: 599 IFGGLVVVFWHRWEHKTGEVEANGNDKVDLN-----GEETHNPSAAELKGLAIEEDVQNY 653

Query: 591 TNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFH 650
           T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+FH
Sbjct: 654 TTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPLFH 713

Query: 651 FHSHSFDL 658
           F+SHSFDL
Sbjct: 714 FNSHSFDL 721

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
TAIR|locus:2157027	738	FRO6 "ferric reduction oxidase	0.462	0.411	0.590	1.6e-169
TAIR|locus:2157032	747	FRO7 "ferric reduction oxidase	0.462	0.406	0.590	2.7e-167
TAIR|locus:2178677	699	FRO4 "ferric reduction oxidase	0.296	0.278	0.363	1.4e-54
TAIR|locus:2025366	704	FRO1 "AT1G01590" [Arabidopsis	0.279	0.261	0.414	1.6e-53
TAIR|locus:2025351	725	FRO2 "AT1G01580" [Arabidopsis	0.278	0.252	0.393	1.3e-51
TAIR|locus:2157697	728	FRO8 "ferric reduction oxidase	0.344	0.311	0.333	4.1e-45
ZFIN|ZDB-GENE-040426-1380	571	cybb "cytochrome b-245, beta p	0.115	0.133	0.316	1e-19
RGD|620598	563	Nox1 "NADPH oxidase 1" [Rattus	0.115	0.134	0.329	8.8e-19
DICTYBASE|DDB_G0291117	1142	noxC "flavocytochrome b large	0.246	0.141	0.325	1.8e-18
UNIPROTKB|F5GWD2	538	CYBB "Cytochrome b-245 heavy c	0.115	0.141	0.303	2.6e-18

TAIR|locus:2157027 FRO6 "ferric reduction oxidase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 1.6e-169, Sum P(2) = 1.6e-169
 Identities = 183/310 (59%), Positives = 235/310 (75%)

Query:   354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 413
             KIT  VEGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+V
Sbjct:   430 KITTCVEGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVV 489

Query:   414 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YP 472
             WA+K S+ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P
Sbjct:   490 WAIKNSDELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLP 549

Query:   473 VPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLAC 532
               +GC+MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ C
Sbjct:   550 RTNGCSMSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGC 609

Query:   533 MVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIR----KKDTK 588
             MV  VLIFGG V+ FWH WE K+   E   +D +++ N +     +  +++    ++D +
Sbjct:   610 MVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDL-NGEETHNPSAAELKGLAIEEDVQ 668

Query:   589 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPI 648
             + T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+
Sbjct:   669 NYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPL 728

Query:   649 FHFHSHSFDL 658
             FHF+SHSFDL
Sbjct:   729 FHFNSHSFDL 738

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2157032 FRO7 "ferric reduction oxidase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.7e-167, Sum P(2) = 2.7e-167
 Identities = 183/310 (59%), Positives = 234/310 (75%)

Query:   354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 413
             KIT  VEGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK CLP  VL+V
Sbjct:   439 KITTCVEGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKDCLPGKVLVV 498

Query:   414 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY-P 472
             WA+K S+ELSLLS     SIC FFS KLNLE  IYVTR++EP LE+G +HK +  S+  P
Sbjct:   499 WAIKNSDELSLLSAIDIPSICHFFSKKLNLEIHIYVTRQSEPCLEDGMVHKVVHPSVKTP 558

Query:   473 VPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLAC 532
               +GC+MSVLVGTG+N+WSGLY+I ST+GFI ++ L++I Y+N +NI +WWYKGLLF+ C
Sbjct:   559 WTNGCSMSVLVGTGDNIWSGLYLIISTIGFIAMITLVDIFYINKYNITTWWYKGLLFVVC 618

Query:   533 MVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIR----KKDTK 588
             MV  VLIFGG V+ FWH WE K+   E   +D +++ N +     +  +++    ++D +
Sbjct:   619 MVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDL-NGEETHNPSAAELKGLAIEEDVQ 677

Query:   589 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPI 648
             + T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+
Sbjct:   678 NYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPL 737

Query:   649 FHFHSHSFDL 658
             FHF+SHSFDL
Sbjct:   738 FHFNSHSFDL 747

GO:0005506 "iron ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IMP;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

TAIR|locus:2178677 FRO4 "ferric reduction oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
 Identities = 72/198 (36%), Positives = 104/198 (52%)

Query:    11 ILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRK 70
             +  +C L  T  F+I W +  +L+ E  AW    + N  G I+++ G+ MW TS    R+
Sbjct:   198 VSNFCFLVHTVVFLIYWAMINKLM-ETFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRR 256

Query:    71 HFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSAS 130
               F++FFYTH LY +++VF  +HVGD  F M                 QS +   ++SA 
Sbjct:   257 KKFEIFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSAR 316

Query:   131 CLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKV 189
              LP   +EL  SK   L Y   S  FL V  +S +QWHPF++ SSS LE K   SV+I+ 
Sbjct:   317 ILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKIQWHPFTITSSSNLE-KDTLSVVIRR 375

Query:   190 LGEWTENLRDYILSKSES 207
              G WT+ L  ++ S  +S
Sbjct:   376 QGSWTQKLYTHLSSSIDS 393

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

TAIR|locus:2025366 FRO1 "AT1G01590" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 78/188 (41%), Positives = 110/188 (58%)

Query:    22 YFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQ 81
             YF I W  + +LV ++L W    ++N  G I+L+AGLMMW T++  +R+  F++FFY+H 
Sbjct:   227 YF-IYWISKNQLVSKMLEWDRTAVSNLAGEIALVAGLMMWVTTYPKIRRRLFEVFFYSHY 285

Query:    82 LYVVFVVFLALHVGDFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCGTVELVL 141
             LY+VF++F   HVG     +   G             QSR  V ++SA  LPC TVEL  
Sbjct:   286 LYIVFMLFFVFHVGISHALIPLPGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNF 345

Query:   142 SKPANLRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDY 200
             SK   L Y+  S  F+ +  +S LQWHPF++ SSS LE +   SV+IK  G+W+  L D 
Sbjct:   346 SKNPMLMYSPTSTMFVNIPSISKLQWHPFTIISSSKLEPET-LSVMIKSQGKWSTKLYD- 403

Query:   201 ILSKSESD 208
             +LS S SD
Sbjct:   404 MLSSSSSD 411

GO:0000293 "ferric-chelate reductase activity" evidence=ISS;IMP

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2025351 FRO2 "AT1G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
 Identities = 74/188 (39%), Positives = 110/188 (58%)

Query:    23 FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQL 82
             ++I W     + Q ++ W   G++N  G I+L AGL+MWAT++  +R+ FF++FFYTH L
Sbjct:   237 YIIYWASMHEISQ-MIMWDTKGVSNLAGEIALAAGLVMWATTYPKIRRRFFEVFFYTHYL 295

Query:    83 YVVFVVFLALHVG-DFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCGTVELVL 141
             Y+VF++F  LHVG  F F +A  G             QSR  V +L+A  LP  T+EL  
Sbjct:   296 YIVFMLFFVLHVGISFSF-IALPGFYIFLVDRFLRFLQSRENVRLLAARILPSDTMELTF 354

Query:   142 SKPANLRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDY 200
             SK + L Y+  S  F+ +  +S LQWHPF++ SSS LE +   S++IK  G+W+  L   
Sbjct:   355 SKNSKLVYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPE-KLSIVIKKEGKWSTKLHQR 413

Query:   201 ILSKSESD 208
             + S  + D
Sbjct:   414 LSSSDQID 421

GO:0000293 "ferric-chelate reductase activity" evidence=ISS;IDA;IMP

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0015688 "iron chelate transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2157697 FRO8 "ferric reduction oxidase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 4.1e-45, Sum P(3) = 4.1e-45
 Identities = 78/234 (33%), Positives = 111/234 (47%)

Query:    16 SLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQL 75
             SL   G  +  W I   + +E+  W+  G     G+ISL+ GL+MW TS   +R+  F++
Sbjct:   206 SLVHGGSTLFIWTITHHIEEEIWKWQRTGRVYVAGLISLVTGLLMWITSLPQIRRKNFEV 265

Query:    76 FFYTHQLYVVFVVFLALHVGDFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCG 135
             F+YTH LY+VF+V    H GD  F     G             QSR    +LSA+   C 
Sbjct:   266 FYYTHHLYIVFLVAFLFHAGDRHFYWVLPGMFLFGLDKILRIVQSRSESCILSANLFSCK 325

Query:   136 TVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTE 195
              +ELVL K   L Y   SF FL +  +S  QWHPFS+ SS    K+  S+++K  G+WT 
Sbjct:   326 AIELVLPKDPMLNYAPSSFIFLNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTN 385

Query:   196 NLRDYILSKSESDSXXXXXXXXXXXXXXXXXXXXXXXXXRNLMYENLILVAGGI 249
             ++ + I   +  ++                           L Y+NL LVAGGI
Sbjct:   386 SVYNKIEEAANCENKINNIIVRVEGPYGPASVDF-------LRYDNLFLVAGGI 432

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-040426-1380 cybb "cytochrome b-245, beta polypeptide (chronic granulomatous disease)" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 1.0e-19, Sum P(4) = 1.0e-19
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:   119 QSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLE 178
             +S++ V +      P  T+EL + K    +     + F+    +S L+WHPF+++S+P E
Sbjct:   294 RSQQKVVITKVVTHPSKTLELQMKKKG-FKMEVGQYIFMMCPSISQLEWHPFTLTSAPEE 352

Query:   179 GKYHSSVLIKVLGEWTENL 197
                H SV I+++G+WT+ L
Sbjct:   353 D--HFSVHIRIVGDWTQAL 369

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|620598 Nox1 "NADPH oxidase 1" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 8.8e-19, Sum P(4) = 8.8e-19
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query:   119 QSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLE 178
             +SR+ V +      PC  +EL + K          + F+    +S+L+WHPF+++S+P E
Sbjct:   289 RSRQKVVITKVVMHPCKVLELQMRK-RGFTMGIGQYIFVNCPSISFLEWHPFTLTSAPEE 347

Query:   179 GKYHSSVLIKVLGEWTENL 197
               +  S+ I+  G+WTENL
Sbjct:   348 EFF--SIHIRAAGDWTENL 364

GO:0000302 "response to reactive oxygen species" evidence=IDA

GO:0001525 "angiogenesis" evidence=ISO

GO:0003081 "regulation of systemic arterial blood pressure by renin-angiotensin" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0006801 "superoxide metabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007165 "signal transduction" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009268 "response to pH" evidence=ISO

GO:0010575 "positive regulation vascular endothelial growth factor production" evidence=ISO

GO:0015992 "proton transport" evidence=ISO

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=ISO;IDA;TAS

GO:0016477 "cell migration" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030171 "voltage-gated proton channel activity" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO

GO:0042554 "superoxide anion generation" evidence=ISO;IMP

GO:0042743 "hydrogen peroxide metabolic process" evidence=ISO

GO:0043020 "NADPH oxidase complex" evidence=ISO;IDA

GO:0045726 "positive regulation of integrin biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048365 "Rac GTPase binding" evidence=ISO

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IMP

GO:0051454 "intracellular pH elevation" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0071438 "invadopodium membrane" evidence=IEA;ISO

GO:0072592 "oxygen metabolic process" evidence=ISO

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IMP

DICTYBASE|DDB_G0291117 noxC "flavocytochrome b large subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 184 (69.8 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
 Identities = 58/178 (32%), Positives = 87/178 (48%)

Query:    40 WRNIGIANFPGVIS--LLAGLMMWAT-SFHPVRKHFFQLFFYTHQLYVVFVVFLALH--V 94
             W  I   + PGV    +++ L++ A  S   +RK  F+LF+Y+H L++ F V L LH  +
Sbjct:   713 WEMI-FNSLPGVTGFIMISFLIIMAILSLKIIRKSNFELFYYSHHLFIGFYVLLILHGTM 771

Query:    95 G-----DFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCGTV-ELVLSKPANLR 148
             G      F       G             ++ R V+VL   CL    V  L  SKP +  
Sbjct:   772 GWIRPPTFWKWFIVPGFFYTVDRSFRLFKRTHR-VEVLDY-CLKNERVINLTFSKPPSFD 829

Query:   149 YNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSE 206
             Y    +  + V  +S LQWHPF+++SSPLE K +  V I+V G WT+ L  ++  K +
Sbjct:   830 YKPGQYLLINVPHISKLQWHPFTMTSSPLEDKIY--VHIRVTGNWTKKLFRWLSIKKQ 885

GO:0050661 "NADP binding" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0043020 "NADPH oxidase complex" evidence=ISS

GO:0042554 "superoxide anion generation" evidence=ISS

GO:0030587 "sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0020037 "heme binding" evidence=ISS

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|F5GWD2 CYBB "Cytochrome b-245 heavy chain" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
 Identities = 24/79 (30%), Positives = 47/79 (59%)

Query:   119 QSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLE 178
             +S++ V +      P  T+EL + K    +     + F++  ++S L+WHPF+++S+P E
Sbjct:   258 RSQQKVVITKVVTHPFKTIELQMKKKG-FKMEVGQYIFVKCPKVSKLEWHPFTLTSAPEE 316

Query:   179 GKYHSSVLIKVLGEWTENL 197
               +  S+ I+++G+WTE L
Sbjct:   317 DFF--SIHIRIVGDWTEGL 333

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011355001 SubName- Full=Chromosome undetermined scaffold_301, whole genome shotgun sequence; (735 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	658
PLN02844	722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	2e-47
PLN02292	702	PLN02292, PLN02292, ferric-chelate reductase	3e-47
PLN02631	699	PLN02631, PLN02631, ferric-chelate reductase	2e-38
PLN02631	699	PLN02631, PLN02631, ferric-chelate reductase	1e-26
PLN02292	702	PLN02292, PLN02292, ferric-chelate reductase	4e-26
PLN02844	722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	1e-23
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	1e-17
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	7e-15
pfam08022	103	pfam08022, FAD_binding_8, FAD-binding domain	1e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-11
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	6e-11
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-11
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	8e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-10
pfam08030	149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	4e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-08
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	3e-06
pfam01794	122	pfam01794, Ferric_reduct, Ferric reductase like tr	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-06
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	7e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	1e-05
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	2e-05
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	2e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	4e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-05
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	5e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	6e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	7e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	7e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	9e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	3e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	4e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	4e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	4e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-04
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	5e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	5e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	5e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	7e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	7e-04
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	7e-04
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	8e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	8e-04
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	8e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.001
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	0.001
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.001
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	0.001
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
pfam04621	336	pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t	0.001
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.001
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.002
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.002
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.002
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.002
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.002
TIGR03354	396	TIGR03354, VI_FHA, type VI secretion system FHA do	0.002
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.003
COG4097	438	COG4097, COG4097, Predicted ferric reductase [Inor	0.003
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	0.003
PHA03419	200	PHA03419, PHA03419, E4 protein; Provisional	0.003
pfam08030	149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	0.004
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
COG4097	438	COG4097, COG4097, Predicted ferric reductase [Inor	0.004
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.004
pfam11235	168	pfam11235, Med25_SD1, Mediator complex subunit 25	0.004
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004

>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase

 Score =  178 bits (452), Expect = 2e-47
 Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 10/228 (4%)

Query: 24  MIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLY 83
           +  W I   +  E+  W+  G     G I+L+ GL++W TS   +R+  F++F+YTH LY
Sbjct: 214 LFIWGISHHIQDEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLY 273

Query: 84  VVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSK 143
           +VF++F   H GD  F M   GIFLF LD+ LR  QSR    +LSA   PC  +ELVL K
Sbjct: 274 IVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSARLFPCKAIELVLPK 333

Query: 144 PANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILS 203
              L+Y   S  F+++  +S  QWHPFS++SS     +  SV+IK  G WT +L + I +
Sbjct: 334 DPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQA 393

Query: 204 KSESDSQVGPPPPVPPPEGHPPPVHPPQGP--VRNLMYENLILVAGGI 249
           + +S++      PV         +  P GP  V  L Y++L+LVAGGI
Sbjct: 394 ELDSETNQMNCIPV--------AIEGPYGPASVDFLRYDSLLLVAGGI 433

Length = 722

>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase

 Score =  177 bits (450), Expect = 3e-47
 Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 18/229 (7%)

Query: 23  FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQL 82
           ++I W I    V ++L W   G++N  G I+L+AGL+MWAT++  +R+ FF++FFYTH L
Sbjct: 227 YIIYW-ISMNQVSQMLEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYL 285

Query: 83  YVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLS 142
           Y+VF++F   HVG     ++  G ++F++DRFLRF QSR  V ++SA  LPC TVEL  S
Sbjct: 286 YIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNFS 345

Query: 143 KPANLRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDYI 201
           K   L Y+  S  F+ +  +S LQWHPF++ SSS LE +   SV+IK  G+W+  L   +
Sbjct: 346 KNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPE-KLSVMIKSQGKWSTKLYHML 404

Query: 202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRN--LMYENLILVAGG 248
            S  + D                  V  P GP     L +E+L++V+GG
Sbjct: 405 SSSDQIDRLA-------------VSVEGPYGPASTDFLRHESLVMVSGG 440

Length = 702

>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase

 Score =  151 bits (382), Expect = 2e-38
 Identities = 83/205 (40%), Positives = 115/205 (56%), Gaps = 3/205 (1%)

Query: 14  WCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFF 73
           +  L  T  F+I W +  +L+ E  AW    + N  G I+++ G+ MW TS    R+  F
Sbjct: 201 FLFLVHTVVFLIYWAMINKLM-ETFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRKKF 259

Query: 74  QLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLP 133
           +LFFYTH LY +++VF  +HVGD  F M    IFLF +DR+LRF QS +   ++SA  LP
Sbjct: 260 ELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSARILP 319

Query: 134 CGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEW 193
              +EL  SK   L Y   S  FL V  +S LQWHPF+++SS    K   SV+I+  G W
Sbjct: 320 SDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSW 379

Query: 194 TENLRDYILSKSES--DSQVGPPPP 216
           T+ L  ++ S  +S   S  GP  P
Sbjct: 380 TQKLYTHLSSSIDSLEVSTEGPYGP 404

Length = 699

>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase

 Score =  114 bits (287), Expect = 1e-26
 Identities = 96/323 (29%), Positives = 168/323 (52%), Gaps = 38/323 (11%)

Query: 355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 414
           +  S EGPYG        + +LILV+GG GI+PF++++ +++ +     + LP +VL+V 
Sbjct: 394 LEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLP-DVLLVC 452

Query: 415 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY-PV 473
           + K  ++L+ L   +   I      +LNL    Y+TRE + P E  + H+ + +  + P 
Sbjct: 453 SFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP-ETTDDHRLLQTKWFKPQ 511

Query: 474 PSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGL- 527
           P    +S ++G  N +W G+ ++SS V F++L+ ++   Y+ P +     I+++ Y+GL 
Sbjct: 512 PLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLW 571

Query: 528 -LFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQ------NVGTMAHN 580
            +FL    G V IF  + I F  LW RK   +E  K+   +V + +      + G+  H 
Sbjct: 572 DMFL----GSVCIFISSSIVF--LW-RKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHG 624

Query: 581 DIRKKDT------KSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKE 634
             R+ ++        +T++ +GS+P+ K+I        G  DVGV+VCGP  ++  VAK 
Sbjct: 625 HERELESVPYQSIVQATSVHFGSKPNLKKILLEAE---GSEDVGVMVCGPRKMRHEVAK- 680

Query: 635 IRSHSLMRECHDPIFHFHSHSFD 657
           I S  L +       HF + SF+
Sbjct: 681 ICSSGLAKN-----LHFEAISFN 698

Length = 699

>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase

 Score =  113 bits (284), Expect = 4e-26
 Identities = 90/319 (28%), Positives = 159/319 (49%), Gaps = 46/319 (14%)

Query: 354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 413
           ++  SVEGPYG      L +E+L++V+GG GI+PF++I+ D+++  +     +P+  LI 
Sbjct: 412 RLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLIC 471

Query: 414 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFI------YVTRETEPPLEEGELHKTMS 467
            A K S++LS+L     + I P    +  L +FI      +VTRE E  ++E   +  + 
Sbjct: 472 -AFKNSSDLSML-----DLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTGNMNII 525

Query: 468 SSIY--PVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPF----NIHS 521
            +++  P  S   +S ++G  + +W    + SS + FII++A++   ++ P     N ++
Sbjct: 526 KTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYT 585

Query: 522 WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHND 581
             YK L++L  +   V+      +    LW +K   +++ +    +VDN  +   +  + 
Sbjct: 586 LAYKSLIYLLVISISVVATSTAAM----LWNKKKYYKKSSQ----QVDNVDSPREIESSP 637

Query: 582 IRKKDTKSSTNILYGSRPDFKEIF----GSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS 637
             ++     TNI YG RP+  ++     GS+        VGV+VCGP  ++  VAK I S
Sbjct: 638 --QQLLVQRTNIHYGERPNLNKLLVGLKGSS--------VGVLVCGPKKMRQKVAK-ICS 686

Query: 638 HSLMRECHDPIFHFHSHSF 656
             L         HF S SF
Sbjct: 687 SGLAEN-----LHFESISF 700

Length = 702

>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase

 Score =  105 bits (264), Expect = 1e-23
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 36/329 (10%)

Query: 355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 414
           I  ++EGPYG      L Y++L+LVAGGIGI+PFL+IL +I    +  +   P+ V +++
Sbjct: 405 IPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIA-SQSSSRYRFPKRVQLIY 463

Query: 415 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSS-SIYPV 473
            VKKS ++ LL+      +    S++LNL+  ++VT+E +P     EL    S       
Sbjct: 464 VVKKSQDICLLNPISSLLLNQ-SSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNF 522

Query: 474 PSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYV-----NPFNIHSW------ 522
            + C+   + G  + +W    V  +++ F++ +  LN +++     +   +         
Sbjct: 523 STKCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMK 582

Query: 523 --------WYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV 574
                   W   LL +   +  +     T +     W R    ++     S +       
Sbjct: 583 TAKEKTPSWVVDLLLIVSFIIAITC--STFVAIILRWRRL---KKEIPRVSQKQGIKPEE 637

Query: 575 GTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKE 634
           G+M     ++        I +G RP+F++IF    K+    D+GV+VCGP +++ SVA  
Sbjct: 638 GSM----EKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASM 693

Query: 635 IRSHSL-----MRECHDPIFHFHSHSFDL 658
            R  S              F FHS +F L
Sbjct: 694 CRLKSQCFNVGDDGKRKMYFSFHSLNFTL 722

Length = 722

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 351 PPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 410
               +   VEGPYG      L Y+N++LVAGG GI+  L IL D+L R +  K+   R V
Sbjct: 84  GGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSS--KTSRTRRV 141

Query: 411 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR 451
            +VW V+   +L     ++ + +      +++ E  IYVTR
Sbjct: 142 KLVWVVRDREDLE----WFLDELRAAQELEVDGEIEIYVTR 178

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 23/132 (17%)

Query: 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKY 181
           TV++L  S      + L + KP   ++      +L    L S+ Q HPF+++SSP + + 
Sbjct: 3   TVELLPDS----DVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQD 58

Query: 182 HSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPV----PPPEGHPPPVHPPQGPVRNL 237
             S++I+    +T  L    L         G    V    P        +          
Sbjct: 59  TLSLIIRAKKGFTTRLLRKALKSPGG----GVSLKVLVEGPYGSSSEDLLS--------- 105

Query: 238 MYENLILVAGGI 249
            Y+N++LVAGG 
Sbjct: 106 -YDNVLLVAGGS 116

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|219702 pfam08022, FAD_binding_8, FAD-binding domain

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 124 VDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYH 182
           V     S LP   VEL++SKP    +Y    + F+    +S+LQ HPF+++S+P + K  
Sbjct: 4   VPKAKVSLLPDNVVELIVSKPKKPFKYKPGQYIFINFPPISFLQSHPFTITSAPEDDKL- 62

Query: 183 SSVLIKVLGEWTENLRDYILSKSESD 208
            SV IK  G WT+ L  Y+ S  E++
Sbjct: 63  -SVHIKAKGGWTKKLAKYLSSSPENN 87

Length = 103

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 73.4 bits (180), Expect = 2e-13
 Identities = 50/168 (29%), Positives = 58/168 (34%), Gaps = 33/168 (19%)

Query: 213  PPPPVPPPEGHPPPVHP----PQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268
            PPPP P PE  P  +      P GP            A   S A P    P P   P G 
Sbjct: 2701 PPPPPPTPEPAPHALVSATPLPPGPA----------AARQASPALP--AAPAPPAVPAGP 2748

Query: 269  PPPGPPLQEEGPP----PQGPHPPVPPPQGPPPPLPPPKGNLMYENL------------- 311
              PG P +   PP    P  P PP  P  GPP  L  P    + E+              
Sbjct: 2749 ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808

Query: 312  IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359
              V    +   P   P  P+PPP  + P  PPP   P  P   +  SV
Sbjct: 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 71.1 bits (174), Expect = 1e-12
 Identities = 45/154 (29%), Positives = 52/154 (33%), Gaps = 22/154 (14%)

Query: 213  PPPPVPPP-EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
            P  P+PPP    P    PP GP    +     +  GG     P    P   P    A P 
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP----AAPA 2879

Query: 272  GPPLQE-EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPP 330
             PP++    P           P   P   P P+               +   PQ  P PP
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQ---------------APPPPQPQPQPP 2924

Query: 331  VPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364
             PPPQ  PP  PPP   P L PT   A    P G
Sbjct: 2925 -PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 37/167 (22%), Positives = 47/167 (28%), Gaps = 14/167 (8%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
             P P P P   P     PQ P + ++    +       +  P +  P     PQG PP 
Sbjct: 128 TAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPR 187

Query: 272 GPPLQEEGPPPQGP----HPPVPPPQGPPPPLPPPKGNLMYE--------NLIVVAGGIS 319
                ++GPP Q P     P   P Q  P    P       +                  
Sbjct: 188 QAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ 247

Query: 320 ETEPQVGPPPPVPPPQGSPPQRPPPSRH--PLLPPTKITASVEGPYG 364
                   PPP P P     Q P P     P   PT      +G   
Sbjct: 248 FPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNA 294

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 68.4 bits (167), Expect = 1e-11
 Identities = 45/154 (29%), Positives = 53/154 (34%), Gaps = 36/154 (23%)

Query: 214  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP---PLPVPPPQGAPP 270
            PP   P      P  P + PVR L              A P V        +PP Q   P
Sbjct: 2866 PPSRSPA---AKPAAPARPPVRRL--------------ARPAVSRSTESFALPPDQPERP 2908

Query: 271  PGPPL------QEEGPPPQGPHPPVPPPQGPPPPLPP---------PKGNLMYENLIVVA 315
            P P        Q + PPP  P PP PPP  P PPL P         P G +    L  + 
Sbjct: 2909 PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALV 2968

Query: 316  GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPL 349
             G     P+   P P P  +      PP + H L
Sbjct: 2969 PGRVAV-PRFRVPQPAPSREAPASSTPPLTGHSL 3001

Length = 3151

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK 417
            V GP G           ++L+AGGIGI+PF ++L  +              + +++  +
Sbjct: 82  EVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKP------GGEITLLYGAR 135

Query: 418 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEG 460
              +L      + + +     +  N    + ++RE+E  L  G
Sbjct: 136 TPADL-----LFLDELEELAKEGPNFRLVLALSRESEAKLGPG 173

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 65.2 bits (159), Expect = 7e-11
 Identities = 35/167 (20%), Positives = 44/167 (26%), Gaps = 19/167 (11%)

Query: 210 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269
           Q  P  P PP +  P  + P Q                   + +P    P    P     
Sbjct: 167 QQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQA 226

Query: 270 PPGPPLQEEGPPPQGPHPPVPPP----QGPPPPLPPPKGNLMYENLIVVAGGISETEPQV 325
           P  PPL  + P    P      P    Q PPPP  PP+                +     
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQ-------------QQPPQPQ 273

Query: 326 GPPPPVPPPQGSP--PQRPPPSRHPLLPPTKITASVEGPYGHEVPYH 370
             PPP   P   P  PQ       P   P  +    +       P  
Sbjct: 274 AQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQF 320

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 65.1 bits (158), Expect = 8e-11
 Identities = 36/164 (21%), Positives = 45/164 (27%), Gaps = 35/164 (21%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           P P+ PP   P     P                     A P    P    PP  AP    
Sbjct: 701 PTPMRPPAAPPGRAQRPAA---------------ATGRARPPAAAPGRARPPAAAPGRAR 745

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 333
           P       P        PP   P    PP             G  +   P   PP P   
Sbjct: 746 P-------PAAAPGRARPPAAAPGRARPPAA---------APGAPTPQPPPQAPPAPQQR 789

Query: 334 PQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLI 377
           P+G+P  +PPP       PT +        G + P   +   L+
Sbjct: 790 PRGAPTPQPPPQ----AGPTSMQLMPRAAPGQQGPTKQILRQLL 829

Length = 991

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 63.8 bits (155), Expect = 2e-10
 Identities = 44/165 (26%), Positives = 48/165 (29%), Gaps = 26/165 (15%)

Query: 202  LSKSESDSQVGPPPPVPPPEGHPPP---VHPPQGPVRNLMYENLILVAGGISEANPHVGP 258
            L +  SD    PPPP+PP      P   V PP+   R          A       P   P
Sbjct: 2540 LEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRP------SEPAVTSRARRPDA-P 2592

Query: 259  PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 318
            P    P       G P    GP P  P PP      PPPP P P  N    +        
Sbjct: 2593 PQSARPRAPVDDRGDP---RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649

Query: 319  SETEPQVGPP----------PPVPPPQGSPPQRPPPSRHPLLPPT 353
                    P                   SPPQRP   R     PT
Sbjct: 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRP---RRRAARPT 2691

Length = 3151

>gnl|CDD|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 432
           YEN++LVAGGIGI+PF++IL D+ ++    K+   + +   WAV+  + L    +   E 
Sbjct: 1   YENVLLVAGGIGITPFISILKDLGNKS---KALKTKKIKFYWAVRDLSSLEWFKDVLNEL 57

Query: 433 ICPFFSDKLNLETFIYVTRETE 454
                 +  N+E  IY+T E E
Sbjct: 58  EE--LKELGNIEIHIYLTGEYE 77

Length = 149

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 35/146 (23%), Positives = 43/146 (29%), Gaps = 36/146 (24%)

Query: 209 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268
           +   PP P   P+  PP   P    +   M                   PP P  PPQ  
Sbjct: 226 APAQPPLPPQLPQQPPPLQQPQFPGLSQQM-------------------PPPPPQPPQQQ 266

Query: 269 PPPGPPLQEEGPPPQGPHPPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 327
             P  P  +  PPPQ    P P  PQG   PLPPP+                +  P V  
Sbjct: 267 QQPPQPQAQ--PPPQNQPTPHPGLPQGQNAPLPPPQQ--------------PQLLPLVQQ 310

Query: 328 PPPVPPPQGSPPQRPPPSRHPLLPPT 353
           P           Q    S+      +
Sbjct: 311 PQGQQRGPQFREQLVQLSQQQREALS 336

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.6 bits (145), Expect = 4e-09
 Identities = 24/140 (17%), Positives = 25/140 (17%), Gaps = 38/140 (27%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP-- 269
             P   P P    P       P                + A      P P P P      
Sbjct: 404 AAPAAAPAPAAAAPAAAAAPAP----------------AAAPQPAPAPAPAPAPPSPAGN 447

Query: 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 329
            P        P       P P P   P P   P                    P   P P
Sbjct: 448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP-----------------APAPPAAPAP 490

Query: 330 PVPPPQGSPPQRPPPSRHPL 349
              P     P  P       
Sbjct: 491 AAAPA---APAAPAAPAGAD 507

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 59.4 bits (144), Expect = 5e-09
 Identities = 36/143 (25%), Positives = 40/143 (27%), Gaps = 29/143 (20%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
            P P   P   P P   PQ P                        PP P  PPQ    P 
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPL---------QQPQFPGLSQQMPPPPPQPPQQQQQPP 270

Query: 273 PPLQEEGPPPQGPHPPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
            P  +  PPPQ    P P  PQG   PLPPP+                +  P V  P   
Sbjct: 271 QPQAQ--PPPQNQPTPHPGLPQGQNAPLPPPQQ--------------PQLLPLVQQPQGQ 314

Query: 332 PP---PQGSPPQRPPPSRHPLLP 351
                 +    Q     R  L  
Sbjct: 315 QRGPQFREQLVQLSQQQREALSQ 337

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.8 bits (143), Expect = 6e-09
 Identities = 27/144 (18%), Positives = 30/144 (20%), Gaps = 30/144 (20%)

Query: 209 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268
           +              P     P               A   + A      P P P P  A
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAP----------AAAAAPAPAAAPQPAPAPAPAPA 440

Query: 269 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 328
           PP        G  P  P    P  Q  P P   P                         P
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP--------------------EPTAAP 480

Query: 329 PPVPPPQGSPPQRPPPSRHPLLPP 352
            P PP   +P   P     P  P 
Sbjct: 481 APAPPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.8 bits (142), Expect = 8e-09
 Identities = 46/172 (26%), Positives = 58/172 (33%), Gaps = 42/172 (24%)

Query: 213  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISE-ANPHVG---PPLP------- 261
            P P  PP      P   P  PV   ++  ++    G+ E A+   G   PPLP       
Sbjct: 2504 PDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAA 2563

Query: 262  ----VPPPQGAP-PPGPPLQEE----GPPPQGPHPPVP-----PPQGPPPPLPPPKGNLM 307
                VPPP+ AP P  P +         PPQ   P  P      P+GP PP P P     
Sbjct: 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP---- 2619

Query: 308  YENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359
                               PPPP P P  + P   PP   P     +   + 
Sbjct: 2620 -------------DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.8 bits (142), Expect = 8e-09
 Identities = 42/151 (27%), Positives = 45/151 (29%), Gaps = 28/151 (18%)

Query: 213  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
            P PP  P  G P  +  P              VA           P  P  PP     P 
Sbjct: 2769 PAPPAAPAAGPPRRLTRPA-------------VASLSESRESLPSPWDPADPPAAVLAPA 2815

Query: 273  PPLQEEGPPPQGPHPPVPPP----QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 328
              L    PP   P  P+PPP       PPP P P    +     V  GG     P    P
Sbjct: 2816 AAL----PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

Query: 329  PPVPPPQGSPP----QRPPPSRHPL---LPP 352
               P     PP     RP  SR      LPP
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPP 2902

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.4 bits (141), Expect = 1e-08
 Identities = 41/171 (23%), Positives = 47/171 (27%), Gaps = 21/171 (12%)

Query: 212  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA--- 268
            GPP  +  P            P      +    V    +   P   P  P+PPP  A   
Sbjct: 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837

Query: 269  --PPPGPPLQEEGPP-----PQGPHPPVPPPQGPPP----PLPPPKGNLMYENLIVVAGG 317
              PPP  P     P      P G     PP + P      P  PP   L    +      
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS----- 2892

Query: 318  ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 368
               TE    PP   P     P   PPP   P  PP         P     P
Sbjct: 2893 -RSTESFALPPDQ-PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941

Length = 3151

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 30/137 (21%), Positives = 33/137 (24%), Gaps = 36/137 (26%)

Query: 208 DSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 267
             Q    PP    +   P   PP+  V                   P    P PV  P  
Sbjct: 87  SPQHQYQPPYASAQPRQPVQQPPEAQVPPQ------------HAPRPAQPAPQPVQQPAY 134

Query: 268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 327
            P P  PLQ    P      P P P    P                        +    P
Sbjct: 135 QPQPEQPLQ---QPVSPQVAPAPQPVHSAPQPA---------------------QQAFQP 170

Query: 328 PPPVPPPQGSPPQRPPP 344
             PV  PQ  P   P P
Sbjct: 171 AEPVAAPQPEPVAEPAP 187

Length = 333

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 2e-08
 Identities = 32/166 (19%), Positives = 40/166 (24%), Gaps = 7/166 (4%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
               P        P V  P+   +++   +      G         P  P P P  A P 
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
            P       P   P    P  Q   P   PP+           A   S       P PP 
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQA-------AQGASAPSPAADDPVPLPPE 744

Query: 332 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLI 377
           P     P   P     P  P      +   P         M E+  
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDA 790

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 30/127 (23%), Positives = 41/127 (32%), Gaps = 3/127 (2%)

Query: 180 KYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHP---PPVHPPQGPVRN 236
           K+ ++ + K L E  +      L + + D+ V          G         P   P  +
Sbjct: 132 KWKAARIHKALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSS 191

Query: 237 LMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP 296
               +        S  +    PP P       PPP P       PP GP  P PPP    
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251

Query: 297 PPLPPPK 303
           PPL   K
Sbjct: 252 PPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 35/169 (20%), Positives = 42/169 (24%), Gaps = 20/169 (11%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           PP   P    P      Q P  +             S+  P     +   P Q  P   P
Sbjct: 74  PPAPAPQSPQPDQQQQSQAPPSHQYP----------SQLPPQ---QVQSVPQQPTPQQEP 120

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV-- 331
                  P   P       Q  PPP  P +                  + Q  P      
Sbjct: 121 YYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLY 180

Query: 332 -----PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYEN 375
                  PQ  PP  P PS   + PP       +  YG   P   MY  
Sbjct: 181 PEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.3 bits (138), Expect = 3e-08
 Identities = 33/166 (19%), Positives = 40/166 (24%), Gaps = 30/166 (18%)

Query: 209  SQVGPPPPVPPPEG-HPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 267
                      PP+        P  G + +L                    PP P P P+ 
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSL------------------ADPPPPPPTPEP 2710

Query: 268  APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQV-- 325
            AP          P P       P     P P   P G           G      P    
Sbjct: 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP------ATPGGPARPARPPTTA 2764

Query: 326  GPPPPVPP---PQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 368
            GPP P PP     G P +   P+   L    +   S   P      
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA 2810

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.9 bits (137), Expect = 3e-08
 Identities = 33/158 (20%), Positives = 41/158 (25%), Gaps = 18/158 (11%)

Query: 213  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
              P  PPP   P    P   P   +               +            Q + PP 
Sbjct: 2622 HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681

Query: 273  PPLQEEGPPPQGPHPPV--PPPQGPPP-PLPPPKGNLMYENLIVVAGGISETEPQVGP-P 328
             P +    P  G    +  PPP  P P P P    +         A   +       P P
Sbjct: 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

Query: 329  PPVP--------------PPQGSPPQRPPPSRHPLLPP 352
            P VP              PP  + P  P P   P   P
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 19/131 (14%), Positives = 23/131 (17%), Gaps = 20/131 (15%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
            P    P   P        P                + A          PP    P P  
Sbjct: 383 RPEAAAPAAAPVAQ-AAAAPAP--------------AAAPAAAASAPAAPPAAAPPAPVA 427

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 333
                 P       P      P PP          E + +      E       P P   
Sbjct: 428 APAAAAPAAAPAAAPAAVALAPAPPAQAAP-----ETVAIPVRVAPEPAVASAAPAPAAA 482

Query: 334 PQGSPPQRPPP 344
           P  +       
Sbjct: 483 PAAARLTPTEE 493

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.4 bits (134), Expect = 7e-08
 Identities = 19/103 (18%), Positives = 20/103 (19%), Gaps = 1/103 (0%)

Query: 245 VAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ-EEGPPPQGPHPPVPPPQGPPPPLPPPK 303
           VAGG               P     P          P P     P P P   P P  P  
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 304 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 346
                             +P   P     P     P  P    
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA 489

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 27/151 (17%), Positives = 31/151 (20%), Gaps = 1/151 (0%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP-PLPVPPPQGAPPP 271
           P  P   P            P R       +  A   S   P   P P P P    A   
Sbjct: 403 PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAA 462

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
            P      P                 P P       +E L       +  +P   P   V
Sbjct: 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

Query: 332 PPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
                 P    P      L P    A     
Sbjct: 523 AESIPDPATADPDDAFETLAPAPAAAPAPRA 553

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 31/147 (21%), Positives = 36/147 (24%), Gaps = 10/147 (6%)

Query: 211 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 270
              PP  PPP          +         + +  A    E +P    P    PP   PP
Sbjct: 64  RFEPPTGPPPGP-GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122

Query: 271 PGPPLQEEGP------PPQGPHPPVPPPQGPPPPLPPPK---GNLMYENLIVVAGGISET 321
           P  P     P       P G   P P    P     P              +      ET
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182

Query: 322 EPQVGPPPPVPPPQGSPPQRPPPSRHP 348
                 PP  PPP   P    P     
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRR 209

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 20/145 (13%), Positives = 27/145 (18%), Gaps = 36/145 (24%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPPPV-HPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 261
            K+ +  +   P   P  +    P                                    
Sbjct: 378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAP----------------------AAAASAPA 415

Query: 262 VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 321
            PP    P P        P       P      P PP                       
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP-------------ETVAI 462

Query: 322 EPQVGPPPPVPPPQGSPPQRPPPSR 346
             +V P P V     +P   P  +R
Sbjct: 463 PVRVAPEPAVASAAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.3 bits (126), Expect = 7e-07
 Identities = 30/150 (20%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
                P   G   P  PP  P            A     A     P  P P P   PP G
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAP------------APAAPAAPAGAAPAQPAPAPAATPPAG 712

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 332
                   PPQ       P      P+P P      E         +  +P   P P   
Sbjct: 713 QADDPAAQPPQAAQGASAPSPAADDPVPLP-----PEPDDPPDPAGAPAQPPPPPAPAPA 767

Query: 333 PPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
               + P   PPS    +      +  +  
Sbjct: 768 AAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797

Length = 824

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 30/102 (29%), Positives = 33/102 (32%), Gaps = 18/102 (17%)

Query: 246 AGGISEANPHVGPPLPVPPPQGAPP-PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 304
           A  ++ A P      P PPP         P     PPP  P  P  P    P   PPP  
Sbjct: 26  ASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPP 85

Query: 305 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 346
                            +P   PPPPV P    PP  P P R
Sbjct: 86  ----------------ADPNAPPPPPVDPN-APPPPAPEPGR 110

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.1 bits (125), Expect = 8e-07
 Identities = 37/203 (18%), Positives = 50/203 (24%), Gaps = 40/203 (19%)

Query: 202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVR-------------------------- 235
           LS  E  ++    PP  PP   PP    P+ P R                          
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235

Query: 236 ---NLMYENLILVAGGISEA-NPHVGP-PLPVPPPQGAPP----PGPPLQEEGPPPQGPH 286
              +   E+     G  +E   P   P  LP    + +        P        P+   
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS 295

Query: 287 PPVPPPQGPPPPLPPPKGNLMYENLI--VVAGGISETEPQVGPPPPVPPPQGSP---PQR 341
           P   P      P P         +      +   S +          P P  S    P R
Sbjct: 296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355

Query: 342 PPPSRHPLLPPTKITASVEGPYG 364
           PPP   P  P  +   S      
Sbjct: 356 PPPPADPSSPRKRPRPSRAPSSP 378

Length = 1352

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 23/116 (19%), Positives = 26/116 (22%), Gaps = 21/116 (18%)

Query: 247 GGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 306
           G      P    P   P P  A    P   +     Q   P  P     P   PP     
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ---PSAPQSATQPAGTPPT---- 426

Query: 307 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
                      +S          PV PP  +P    P              S  GP
Sbjct: 427 -----------VSV---DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGP 468

Length = 614

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 51.6 bits (123), Expect = 1e-06
 Identities = 30/140 (21%), Positives = 40/140 (28%), Gaps = 12/140 (8%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
             P P  PP+    P  P    + ++ Y+         S    +   P+   P    PPP
Sbjct: 647 VFPTPHQPPQVEITPYKPTWTQIGHIPYQP--------SPTGANTMLPIQWAPGTMQPPP 698

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
             P      PP  P      P        PP            A       P    P   
Sbjct: 699 RAP--TPMRPPAAPPGRAQRPAAATGRARPPAAA--PGRARPPAAAPGRARPPAAAPGRA 754

Query: 332 PPPQGSPPQRPPPSRHPLLP 351
            PP  +P +  PP+  P  P
Sbjct: 755 RPPAAAPGRARPPAAAPGAP 774

Length = 991

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 23/98 (23%), Positives = 25/98 (25%), Gaps = 13/98 (13%)

Query: 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 264
           S+  S     P  P P   P        P                S       PP P  P
Sbjct: 185 SDPPSSSPGVPSFPSPPEDPSSPSDSSLP-------------PAPSSFQSDTPPPSPESP 231

Query: 265 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 302
              +PPPGP      P  Q P      P  P     P 
Sbjct: 232 TNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 26/153 (16%), Positives = 31/153 (20%), Gaps = 24/153 (15%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
           G  P   PP               +  +                         P  + P 
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGE-----------DADPASASPSDPPSSSPG 193

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
            P       PP+ P  P      P P                             PP P 
Sbjct: 194 VPSFP---SPPEDPSSPSDSSLPPAPSSFQSDT---------PPPSPESPTNPSPPPGPA 241

Query: 332 PPPQGSPPQRPPPS-RHPLLPPTKITASVEGPY 363
            PP     Q PP S   P  P    T +  G  
Sbjct: 242 APPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 19/97 (19%), Positives = 22/97 (22%)

Query: 206 ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP 265
            + +   P P   P      P  PP       +             A P      P PP 
Sbjct: 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453

Query: 266 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 302
           Q AP          P P        P   P      P
Sbjct: 454 QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 32/166 (19%), Positives = 39/166 (23%), Gaps = 19/166 (11%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVA---------GGISEANPHVGPPLPVP 263
            PP  P                          +A          G + A        P  
Sbjct: 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAA 460

Query: 264 ---PPQGAPPPGPPLQEEGPPPQGPHP-PVPPPQGPPP--PLPP-PKGNLMYENLIVVAG 316
              P    P P        P    P   P P    PPP   LPP        +     AG
Sbjct: 461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG 520

Query: 317 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
            ++E+ P    P    P        P P+  P       T  V  P
Sbjct: 521 WVAESIPD---PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563

Length = 700

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 38/140 (27%), Positives = 43/140 (30%), Gaps = 45/140 (32%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           PPP PP      P      P                        PP P  PP  AP P  
Sbjct: 43  PPPPPPSTAAAAPAPAAPPP------------------------PPPPAAPP--APQPDD 76

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLI-----VVAGGISETE------ 322
           P     PPP  P+ P PPP  P  P PP       +N +     VV  G  E++      
Sbjct: 77  PNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRIDNAVGGFSYVVPAGWVESDATHLDY 136

Query: 323 --------PQVGPPPPVPPP 334
                       P P  PPP
Sbjct: 137 GSALLSKTTGEPPMPGQPPP 156

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 29/141 (20%), Positives = 37/141 (26%), Gaps = 25/141 (17%)

Query: 207 SDSQVGPPPPVPPPEGHPP---PVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 263
           S         +P P+ +           GPV   M       A     +    G P+  P
Sbjct: 633 SGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGM------PAHTARPSRVARGDPVR-P 685

Query: 264 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 323
               A    P     G PP G     PPP  P    P P G+               +  
Sbjct: 686 TAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGS---------------SLI 730

Query: 324 QVGPPPPVPPPQGSPPQRPPP 344
                PP P P G+       
Sbjct: 731 ASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 30/177 (16%), Positives = 34/177 (19%), Gaps = 30/177 (16%)

Query: 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV 256
           LR       +S    GP      P   P P                           P  
Sbjct: 358 LRMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAA----------------APAPAA 401

Query: 257 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ-----GPPPPLPPPKGNLMYENL 311
            P  P   P  A                P       Q         P P P         
Sbjct: 402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA-------- 453

Query: 312 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 368
              A   +   P    P PV     + P R  P+  P           E P     P
Sbjct: 454 -PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 30/112 (26%), Gaps = 16/112 (14%)

Query: 251 EANPHVGPPLPVPPP--QGAPPPGPPLQEEGPPPQG-----PHPPVPPPQGPPPPLPPPK 303
           +A+   GP   + P   Q A  P P       P          P  P     P   PP  
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427

Query: 304 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLL-PPTK 354
                              P    P  V P Q    ++ P S+   L P T 
Sbjct: 428 SVDP--------PAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTL 471

Length = 614

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 26/147 (17%), Positives = 34/147 (23%), Gaps = 31/147 (21%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           P   P      P    P+                                P + AP   P
Sbjct: 454 PAAAPAA-AARPAAAGPRPV-----------------------AAAAAAAPARAAPAAAP 489

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG---NLMYENLIVVAGGISETEPQVGPPPP 330
              ++ PPP    PP      P  P   P G     + +          ET        P
Sbjct: 490 APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549

Query: 331 VPPPQGSP----PQRPPPSRHPLLPPT 353
            P    +       RPP +    LP  
Sbjct: 550 APRAAAATEPVVAPRPPRASASGLPDM 576

Length = 700

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 25/90 (27%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 210 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269
               PPP     G PP          +     L  V+      NP +  P P  P   AP
Sbjct: 184 GAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVS-----FNPFLPGPSPAQPS--AP 236

Query: 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPL 299
           P   P     P  Q   PP  PP  P  P+
Sbjct: 237 PASIPAPPIPPVIQYVAPPPVPPPQPIIPI 266

Length = 582

>gnl|CDD|216705 pfam01794, Ferric_reduct, Ferric reductase like transmembrane component

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 18  RFTGYFMIA----------WDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHP 67
           R+ G                         LL  +        GVI+L+  L++  TS  P
Sbjct: 38  RWLGRLAFLLALLHVILYLVLWLRLGGILLLLEKLKRPYILLGVIALVLLLLLAITSLPP 97

Query: 68  VR-KHFFQLFFYTHQLYVVFVVFLA 91
           +R +  ++LF Y H L  V  +   
Sbjct: 98  LRRRLGYELFLYLHILLAVAFLLAL 122

This family includes a common region in the transmembrane proteins mammalian cytochrome B-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from mouse-ear cress. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane. The Frp1 protein from S. pombe is a ferric reductase component and is required for cell surface ferric reductase activity, mutants in frp1 are deficient in ferric iron uptake. Cytochrome B-245 heavy chain is a FAD-dependent dehydrogenase it is also has electron transferase activity which reduces molecular oxygen to superoxide anion, a precursor in the production of microbicidal oxidants. Mutations in the sequence of cytochrome B-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterized by the absence of a functional plasma membrane associated NADPH oxidase. The chronic granulomatous disease gene codes for the beta chain of cytochrome B-245 and cytochrome B-245 is missing from patients with the disease. Length = 122

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 26/157 (16%), Positives = 32/157 (20%), Gaps = 24/157 (15%)

Query: 210 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269
            VGP P     EG P P                                  P  P   A 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPE-----------------------EAARPAAPAAPAA 623

Query: 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 329
           P  P        P        P    P   P         +        +       PPP
Sbjct: 624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683

Query: 330 PVPPPQGSPPQRPPPSR-HPLLPPTKITASVEGPYGH 365
              P   + P    P++  P    T      + P   
Sbjct: 684 APAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 28/110 (25%), Positives = 31/110 (28%), Gaps = 24/110 (21%)

Query: 261 PVPPPQGAPP--PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 318
           PVP PQ A P    P      P P     P        PP  P                 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTR--PKAAAAANIPPKEP----------------- 402

Query: 319 SETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 368
                +   PPPVPP   +PP    P   P L    I    +  Y    P
Sbjct: 403 ---VRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.8 bits (119), Expect = 5e-06
 Identities = 27/153 (17%), Positives = 32/153 (20%), Gaps = 38/153 (24%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 262
           S +        PPP  PP   PPP   P                  +SE    VG P P 
Sbjct: 105 SPTPPGPSSPDPPPPTPPPASPPPSPAP-----------------DLSEMLRPVGSPGPP 147

Query: 263 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP--PPLPPPKGNLMYENLIVVAGGISE 320
           P          P              +P             P                  
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP----------------- 190

Query: 321 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 353
              +  P  P       PP+R  P       P 
Sbjct: 191 --AEPPPSTPPAAASPRPPRRSSPISASASSPA 221

Length = 1352

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 49.3 bits (117), Expect = 7e-06
 Identities = 34/148 (22%), Positives = 42/148 (28%), Gaps = 27/148 (18%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           PP V P +  PP   PP              V    S     +  P   P     P  GP
Sbjct: 552 PPKVSPSDRGPPKASPP--------------VMAPPSTGPRVMATPSTGPRDMAPPSTGP 597

Query: 274 PLQE---EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG----------ISE 320
             Q    +GPP  GPH   PP   P    P      + E L+  + G             
Sbjct: 598 RQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGR 657

Query: 321 TEPQVGPPPPVPPPQGSPPQRPPPSRHP 348
               +   P       +    P PS  P
Sbjct: 658 DGSGIQQEPSSRRQPATQSTPPRPSWLP 685

Length = 1000

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.8 bits (117), Expect = 8e-06
 Identities = 21/122 (17%), Positives = 25/122 (20%), Gaps = 4/122 (3%)

Query: 248 GISEANPHVGPPLPVPPPQGA-PPPGPPLQEEGPPPQGPH--PPVPPPQGPPPPLPPPKG 304
            +  A     P    P    A P   P      P           P P   P P P P  
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443

Query: 305 NLMYENLIVVAGGISETEPQVGP-PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPY 363
                             P   P P P   P+ +    P P   P         +     
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 364 GH 365
             
Sbjct: 504 AG 505

Length = 824

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 248 GISEANPHVGPPLPVPPPQ-GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 306
           G+ +      PP P      G PPP PP + E   P  P  P  PP  P P  P      
Sbjct: 49  GLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

Query: 307 M 307
           +
Sbjct: 109 V 109

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 356 TASVEGPYGHEVPYHLMY--ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 413
             +VEGPYG    +         I +AGGIGI+PFLA+L   L    +      R V + 
Sbjct: 79  RVTVEGPYGR---FTFDDRRARQIWIAGGIGITPFLALLEA-LAARGD-----ARPVTLF 129

Query: 414 WAVKKSNELSLL 425
           + V+   +   L
Sbjct: 130 YCVRDPEDAVFL 141

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 25/124 (20%), Positives = 33/124 (26%), Gaps = 7/124 (5%)

Query: 221 EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280
             HP     P    R+  +       G   +       P+P   P  AP P P      P
Sbjct: 372 RHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAP--P 429

Query: 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQV----GPPPPVPPPQG 336
           PP  P  P   P     P PPP+                +   +         P  PP  
Sbjct: 430 PPATP-LPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGA 488

Query: 337 SPPQ 340
              +
Sbjct: 489 DLAE 492

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 17/97 (17%), Positives = 21/97 (21%), Gaps = 9/97 (9%)

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 332
           P    E   P     P  P    P   P  +           A   +         P  P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQA--------AAAPAPAAAPAAAASAPAAP 417

Query: 333 PPQGSPPQR-PPPSRHPLLPPTKITASVEGPYGHEVP 368
           P    P     P +  P   P    A+V         
Sbjct: 418 PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 24/123 (19%), Positives = 32/123 (26%), Gaps = 31/123 (25%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           P P P P         P              V    + +        P        PP  
Sbjct: 362 PVPAPQPAKPTAAAPSP--------------VRPTPAPSTR------PKAAAAANIPPKE 401

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 333
           P++E   PP  P  PV PP    P   P            +       + +    PP PP
Sbjct: 402 PVRETATPPPVPPRPVAPPVPHTPESAPK-----------LTRAAIPVDEKPKYTPPAPP 450

Query: 334 PQG 336
            + 
Sbjct: 451 KEE 453

Length = 585

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 21/108 (19%)

Query: 361 GPYGH----EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 416
            P G     EVP     + L L+A G GI+PFL++L D+       K      +++V  V
Sbjct: 88  KPTGFLTLDEVP---PGKRLWLLATGTGIAPFLSMLRDLEIWERFDK------IVLVHGV 138

Query: 417 KKSNELSLLSNF--YKESICPFFSDKLNLETFIYVTRETEPPLEEGEL 462
           + + EL+         +                 V+RE E     G +
Sbjct: 139 RYAEELAYQDEIEALAKQYNG------KFRYVPIVSREKENGALTGRI 180

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 33/173 (19%), Positives = 43/173 (24%), Gaps = 26/173 (15%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP-- 271
           PPP P       P    +        +        +           P P P  AP P  
Sbjct: 442 PPPPPRARPGSTP-ACARRARAQRARDAGPEYVDPLGALRRLPAGAAPPPEPAAAPSPAT 500

Query: 272 -------GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 324
                  GPP      PP+        P   PP   PP+                  EP 
Sbjct: 501 YYTRMGGGPPR----LPPRNRATETLRPDWGPPAAAPPEQM-----------EDPYLEPD 545

Query: 325 VGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS-VEGPYGHEVPYHLMYENL 376
                       +    P  +  P   P     S  E P   E+P   +Y+N 
Sbjct: 546 DDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNP 598

Length = 694

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 50/196 (25%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 198 RDYILSKSESDSQVGPPPPVPPPEGHPPP-VHPP--QGPVR-NLMYENLILVAG--GISE 251
           R+  L  + S   + PPP  P P+       HPP  QGP     M  NL        +S 
Sbjct: 333 REQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSS 392

Query: 252 ANPHVGPPLPVPP----PQGAPPPGPPLQEEG-------PPPQGPHPPVPPPQGPPPPLP 300
              H  P    PP    PQ  P    P Q          PP    HP      GPP   P
Sbjct: 393 LPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQS-P 451

Query: 301 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360
             +               S   P +GPPP +P    + P R      P       +    
Sbjct: 452 FAQHPF-----------TSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCA 500

Query: 361 GPYGHEVPYHLMYENL 376
           GP     P  +  E L
Sbjct: 501 GPGPPLPPIQIKEEPL 516

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 27/104 (25%), Positives = 31/104 (29%), Gaps = 16/104 (15%)

Query: 242 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 301
           L L +   S +N    PP P   P   P P PPL +       P PP PPP         
Sbjct: 508 LNLESQSGSASNTAKTPPPPQKSPP-PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNA 566

Query: 302 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS 345
           P                        PPP    P  SP +   P 
Sbjct: 567 P---------------AQIPADSSPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 32/141 (22%), Positives = 40/141 (28%), Gaps = 13/141 (9%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
           P P  PPP    P   P   P + L      L AG   + N   G P   PP   A P G
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQAL----QALPAGDQQQHNTPTGSPAANPPATFALPAG 106

Query: 273 PPLQ----EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV-----VAGGISETEP 323
           P       E G       P +        PL  P      + L        +G +   + 
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQ 166

Query: 324 QVGPPPPVPPPQGSPPQRPPP 344
                      Q    + PP 
Sbjct: 167 SAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 47.0 bits (111), Expect = 3e-05
 Identities = 31/151 (20%), Positives = 40/151 (26%), Gaps = 4/151 (2%)

Query: 210 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269
           Q G P   P PEG+P      Q     + Y   +       +         P   P  AP
Sbjct: 367 QTGEPVIAPAPEGYPQQ---SQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAP 423

Query: 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 329
            P  P Q+    P    P                    Y+         ++ EP    P 
Sbjct: 424 APEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQ-EPLYQQPQ 482

Query: 330 PVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360
           PV       P+       P  PP      VE
Sbjct: 483 PVEQQPVVEPEPVVEETKPARPPLYYFEEVE 513

Length = 1355

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 46.6 bits (110), Expect = 4e-05
 Identities = 38/167 (22%), Positives = 48/167 (28%), Gaps = 42/167 (25%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
             P    PP   P    PP                G         G P P PPPQ   PP
Sbjct: 739 AAPGRARPPAAAPGRARPPAA------------APGRARPPAAAPGAPTPQPPPQA--PP 784

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPP-------PPLPPPKGNLMYENLIVVAGGISETEP- 323
            P  +     P+G   P PPPQ  P          P  +G        ++ GG+    P 
Sbjct: 785 APQQR-----PRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPS 839

Query: 324 --------QVGPPPPVPPPQGSPP----QRP---PPSRHPLLPPTKI 355
                   +     P P P         Q P   PP   P+    ++
Sbjct: 840 LKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQL 886

Length = 991

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 24/125 (19%), Positives = 28/125 (22%), Gaps = 27/125 (21%)

Query: 261 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVP----PPQGPPPPLPPPKGNLMYENLIVVAG 316
           P  P   AP   P  Q        P          P  PP   PP               
Sbjct: 381 PARPEAAAPAAAPVAQA--AAAPAPAAAPAAAASAPAAPPAAAPPAPVA---APAAAAPA 435

Query: 317 GISETEPQVGPPPPVPPPQ----------------GSPPQRPPPSRHPLLPPTKITASVE 360
                 P      P PP Q                      P P+  P     ++T + E
Sbjct: 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP--AAARLTPTEE 493

Query: 361 GPYGH 365
           G   H
Sbjct: 494 GDVWH 498

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (110), Expect = 5e-05
 Identities = 22/101 (21%), Positives = 25/101 (24%), Gaps = 2/101 (1%)

Query: 254 PHVGPPLPVPPPQGAPPPG--PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 311
           P    P P  PPQ A P                P  P  PP     P   P   L     
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 312 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 352
            ++A        Q         P  +   RP  S    L  
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLAS 461

Length = 647

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 32/136 (23%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP- 271
           P  P P P   P P  P     R    E         +  N + G  +P  P    PPP 
Sbjct: 283 PVEPEPLPVPAPVPPTPEDDNPRPTDDEF--------AVPNFNEGLDVPDNPQDPVPPPN 334

Query: 272 ----GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE-PQVG 326
               G P +E   PP     P      P PP  P   N  + + +         + P+  
Sbjct: 335 EGKDGNPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQE 394

Query: 327 PPPPVPPPQGSPPQRP 342
           P  P    +  P   P
Sbjct: 395 PNIPEDSNKEVPEDVP 410

Length = 576

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 27/123 (21%), Positives = 34/123 (27%), Gaps = 18/123 (14%)

Query: 235 RNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG 294
           R ++ E  I   GG         PP  +P          P     P  + P     P   
Sbjct: 167 REMLVELQIGGRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLP 226

Query: 295 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 354
            P P  P                     P   P PP+PP        P P   P++P   
Sbjct: 227 GPSPAQPS------------------APPASIPAPPIPPVIQYVAPPPVPPPQPIIPIQH 268

Query: 355 ITA 357
           I A
Sbjct: 269 IRA 271

Length = 582

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 23/152 (15%), Positives = 30/152 (19%), Gaps = 22/152 (14%)

Query: 207 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP- 265
           +  Q   P   P             G                     P+  P    P   
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGF----------------PPRAPYASPASYAPEQE 191

Query: 266 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGP-----PPPLPPPKGNLMYENLIVVAGGISE 320
           +   P      E     +    P P    P       P PPP    ++            
Sbjct: 192 RDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDA 251

Query: 321 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 352
               + P  P P      P   P      L P
Sbjct: 252 PVVPIRPSAPGPLAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 26/147 (17%), Positives = 31/147 (21%), Gaps = 30/147 (20%)

Query: 208 DSQVGPPPPVPPPEGHPPPVHPPQGP-VRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 266
           D   G P P PP   H      P+ P      YE       G   A+             
Sbjct: 89  DPSAGEPAPPPP---HARRTSEPELPRPGRRPYEGY-----GGPRADDRPPGLPRQDQLP 140

Query: 267 GAPPPGPPLQEEG-----PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 321
            A P  P  Q+       P     +       G PP  P                  S  
Sbjct: 141 TARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYA----------------SPA 184

Query: 322 EPQVGPPPPVPPPQGSPPQRPPPSRHP 348
                      P     P+     R  
Sbjct: 185 SYAPEQERDREPYDAGRPEYDQRRRDY 211

Length = 617

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 229 PPQGPVRNLMYENLILVAGGISEANPHVG----PPLPVPPPQGAPPPGPPLQEEGPPPQG 284
            P  PV  L+ + L  +  G             P  P  PP  A PP PP     P    
Sbjct: 362 APGAPVSELL-DRLEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAA- 419

Query: 285 PHPPVPPPQGPPPPLPP 301
              P P P  P    PP
Sbjct: 420 --RPAPAPAPPAAAAPP 434

Length = 576

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
             P + P      P  PP+G            V  G   A P + P    PP     P  
Sbjct: 51  DEPDMMPAATQALPTQPPEGAAE--------AVRAG-DAAAPSLDPATVAPPNTPVEPEP 101

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 303
            P++   P P     P P PQ      P PK
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPK 132

Length = 226

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 21/148 (14%), Positives = 26/148 (17%), Gaps = 18/148 (12%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
            P    P    PP  P   P        +       S A   +              P P
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 333
                  P     P    P+                                    P P 
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAP------------------ARAAPAAAPAPA 492

Query: 334 PQGSPPQRPPPSRHPLLPPTKITASVEG 361
               PP    P       P +  A+  G
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPDAAPAG 520

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 26/126 (20%), Positives = 33/126 (26%), Gaps = 3/126 (2%)

Query: 246 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK-- 303
             G +  +   G    +            +       +   P  PPP             
Sbjct: 27  TPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRS 86

Query: 304 GNLMYENLIVVAGGISETEP-QVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
                 + +  A    E  P   GP  P PPP   PP  PPPS  P L          GP
Sbjct: 87  TPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGP 146

Query: 363 YGHEVP 368
                P
Sbjct: 147 PPAASP 152

Length = 1352

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 41/155 (26%), Positives = 46/155 (29%), Gaps = 21/155 (13%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPL------PVPPPQG 267
             P  PP        PPQG                   A     P        P   PQ 
Sbjct: 189 LAPSAPPPTPSAQAVPPQGS------------PIAAQPAPQPQQPSPLSLISAPSLHPQR 236

Query: 268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 327
            P P PPLQ +    Q P PP P  + P      P G  M   L    G +    P   P
Sbjct: 237 LPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGP-GPPMPHAL--QQGPVFLQHPSSNP 293

Query: 328 PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
           P P    Q   P  P PS+      T  + S   P
Sbjct: 294 PQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQP 328

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 44/184 (23%), Positives = 56/184 (30%), Gaps = 18/184 (9%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPP---PVHPPQGPVRNLMYENLILVAGGISEANPHVGPP 259
           + + S     P     PP+G P    P   PQ P    +     L    +   +P   P 
Sbjct: 188 ALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHP---PL 244

Query: 260 LPVPPPQGAP-PPGPPLQEEGPPPQGPHPPVPPP--QGPPPPLPPPKGNLMYENLIVVAG 316
            P    Q +P PP P  +       GP PP+P    QGP     P         L     
Sbjct: 245 QPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQV 304

Query: 317 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPL---------LPPTKITASVEGPYGHEV 367
                  Q  P    PP Q +   + PP   PL          PP            H+ 
Sbjct: 305 PPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKH 364

Query: 368 PYHL 371
           P HL
Sbjct: 365 PPHL 368

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 241 NLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGP 295
           + +   G    A    G     PPP   PP  P      PPP+   PP  PP+GP
Sbjct: 892 DQVFGPGTGRVATAPGGDAASAPPPGAGPPAPPQ---AVPPPRTTQPPAAPPRGP 943

Length = 991

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 25/122 (20%), Positives = 31/122 (25%), Gaps = 22/122 (18%)

Query: 254 PHVGPPLP------VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLM 307
           P+ GPPL             +    P    +        PP   P  P  P PP      
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE----- 202

Query: 308 YENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEV 367
                        + P     PP P    S    P P       P    A+   P   +V
Sbjct: 203 -----------DPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251

Query: 368 PY 369
           P 
Sbjct: 252 PP 253

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 20/103 (19%), Positives = 25/103 (24%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 262
            +               P   P     P     +   ++    AGG +        P P 
Sbjct: 818 KRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPP 877

Query: 263 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGN 305
            P        PP      PP G   P P P       P P G 
Sbjct: 878 EPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGG 920

Length = 1352

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 23/118 (19%)

Query: 135 GTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEW 193
            T  L L      L + A  F FL+     W + HPF++SS+P +        IK LG++
Sbjct: 8   PTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAP-DPDGRLRFTIKALGDY 66

Query: 194 TENLRDYILSKSESDSQVGPPPPVPPPEGH--PPPVHPPQGPVRNLMYENLILVAGGI 249
           T  L + +        + G    V  P G          Q           I +AGGI
Sbjct: 67  TRRLAERL--------KPGTRVTVEGPYGRFTFDDRRARQ-----------IWIAGGI 105

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 17/157 (10%), Positives = 26/157 (16%), Gaps = 13/157 (8%)

Query: 204 KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 263
            +       PP    P         P                    +   P    P   P
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVA----------PPQAPAVPPPPASAPQQAP 411

Query: 264 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 323
                      L       +           P         N   E L  V         
Sbjct: 412 AVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVR---PAPSA 468

Query: 324 QVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360
               P      +          + P+  P  +  ++E
Sbjct: 469 LEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALE 505

Length = 647

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 23/89 (25%)

Query: 267 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 326
           GAP P         P      P  PP    PP+PP                      +  
Sbjct: 380 GAPAPPSAAWGAPTPA----APAAPPPAAAPPVPPA------------------APARPA 417

Query: 327 PPPPVPPPQGSPPQRPP-PSRHPLLPPTK 354
              P P P       PP  S  P    + 
Sbjct: 418 AARPAPAPAPPAAAAPPARSADPAAAASA 446

Length = 576

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 19/102 (18%), Positives = 24/102 (23%), Gaps = 21/102 (20%)

Query: 256 VGPPLPVPPPQGAPPPGPP---------LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 306
            G  +P  PP+ AP PG P              P P        P Q P    P  +   
Sbjct: 168 SGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQ- 226

Query: 307 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 348
                          +  V P     P   +         H 
Sbjct: 227 -----------QQPQQQPVQPAQQPTPQNPAQQPPQTEQGHK 257

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 12/89 (13%)

Query: 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 264
                    P PV  P   P P  P Q PV                   P      P P 
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQ------------VAPAPQPVHSAPQPA 164

Query: 265 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQ 293
            Q   P  P    +  P   P P +  P+
Sbjct: 165 QQAFQPAEPVAAPQPEPVAEPAPVMDKPK 193

Length = 333

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 29/124 (23%), Positives = 32/124 (25%), Gaps = 22/124 (17%)

Query: 252 ANPHVGPPL----PVPPPQG-APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 306
            N             P PQ    PP    Q   P  Q P   VPP   P P  P P+   
Sbjct: 71  VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ--- 127

Query: 307 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS--RHPLLPPTKITASVEGPYG 364
                          +P   P P  P  Q   PQ  P     H    P +       P  
Sbjct: 128 ------------PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVA 175

Query: 365 HEVP 368
              P
Sbjct: 176 APQP 179

Length = 333

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 11/95 (11%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV-PPPQGAPPP 271
             P  PP    P PV  P               A  ++ A P    P  V  P + AP P
Sbjct: 412 SAPAAPPAAAPPAPVAAPA-AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP 470

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 306
                             P         P  +G++
Sbjct: 471 AVA------SAAPAPAAAPA---AARLTPTEEGDV 496

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 21/126 (16%), Positives = 27/126 (21%), Gaps = 15/126 (11%)

Query: 252 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG----PHPPVPPPQGPPPPLPPPKGNLM 307
                      P    A       +     P G      P  PP     PP      +  
Sbjct: 796 FRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSK 855

Query: 308 YENLI--VVAGGISETEPQVGPPPPVPPPQGSPPQR---------PPPSRHPLLPPTKIT 356
            +       A G +       P P   P   +PP+          P P   P        
Sbjct: 856 SKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGP 915

Query: 357 ASVEGP 362
               GP
Sbjct: 916 MPPGGP 921

Length = 1352

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 418
           V GP G+      + + ++L+AGG GI+P  AI  ++  + +         V +++  + 
Sbjct: 93  VRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGD------ANKVTLLYGART 146

Query: 419 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 452
           + +L        + +     ++L  +    VT +
Sbjct: 147 AKDL-----LLLDEL-----EELAEKEVHPVTDD 170

Length = 252

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.7 bits (104), Expect = 3e-04
 Identities = 28/149 (18%), Positives = 37/149 (24%), Gaps = 25/149 (16%)

Query: 252 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 311
           A+   G          A           P  + P  P P P     P  PPK        
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP------- 86

Query: 312 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-----SVEGPYG-- 364
              A   +       PP                   PL       A     S+E P    
Sbjct: 87  ---AAAAAAAAAPAAPPAA-AAAAAPAAAAVEDEVTPLRGAAAAVAKNMDASLEVPTATS 142

Query: 365 -HEVPYHLMYENLILV------AGGIGIS 386
              VP  L+ +N I++        G  +S
Sbjct: 143 VRAVPAKLLIDNRIVINNHLKRTRGGKVS 171

Length = 1228

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 266 QGAPPPGPPLQEEGPPPQGPHPPV-PPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 324
             +P   P ++++ P P  P P   P P  P  P   P      E     +    E +P 
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPA-----ELPSPASAPTPEQQPP 435

Query: 325 VGPPPPVPPPQGSPPQRPPPSRHPLLP 351
           V    P+PP   SP    P +     P
Sbjct: 436 VARSAPLPP---SPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 24/136 (17%)

Query: 241 NLILVAGGISEANPHVGPPLPVPPPQGAPP--PGPPLQEE--------------GPPPQG 284
             +        A                 P   G     +              G  P+ 
Sbjct: 73  AAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKP 132

Query: 285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGIS-----ETEPQVGPPPPVPPPQGSPP 339
              P   P+  P P  P +  L  E +                PQ   P  +PP Q + P
Sbjct: 133 EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFP 192

Query: 340 QR---PPPSRHPLLPP 352
           Q+     P  +P  P 
Sbjct: 193 QQGPPEQPPGYPQPPQ 208

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 37/145 (25%), Positives = 46/145 (31%), Gaps = 24/145 (16%)

Query: 209 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268
            QV   P  P P+    P +PP    +    +          +A     PP      Q  
Sbjct: 105 QQVQSVPQQPTPQ--QEPYYPPPSQPQPPPAQQP--------QAQQPQPPPQVPQQQQYQ 154

Query: 269 PPPGPPLQEEGPPPQGPHPPVP----------PPQGPPPPLPPPKGNLMYENLIVVAGGI 318
            PP  P  ++ PPPQ    P             PQ  PP  P P    M         G 
Sbjct: 155 SPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPY----SGA 210

Query: 319 SETEPQVGPPPPVPPPQGSPPQRPP 343
             ++   GPP P P   G P  RP 
Sbjct: 211 PPSQQFYGPPQPSPYMYGGPGGRPN 235

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 254 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV 313
           PH     P+  P   P      Q++   PQ P  P P  Q P  P+ P       +  + 
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 799

Query: 314 VAGGISETEPQVGP--------PPPVPPPQGSPPQRPPPSR------HPLL 350
                 + +  V P         P  P PQ   PQ+P   +      HPLL
Sbjct: 800 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850

Length = 1355

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 12/48 (25%)

Query: 254 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 301
           P V  P   P  Q          ++ P      P    P   PP    
Sbjct: 207 PTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 25/87 (28%), Gaps = 8/87 (9%)

Query: 261 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 320
             PP    P   PP+ +  PP     PPV      PPP  P                   
Sbjct: 29  FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAA--------PPPDPEPPV 80

Query: 321 TEPQVGPPPPVPPPQGSPPQRPPPSRH 347
             P   P P  PP     P  PPP   
Sbjct: 81  PGPAGPPSPLAPPAPARKPPLPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 20/135 (14%), Positives = 28/135 (20%), Gaps = 10/135 (7%)

Query: 216 PVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL 275
                    PP  P      +   ++       +                + A PP    
Sbjct: 417 AAAATRAEAPPAAPAPPATADRG-DDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

Query: 276 QEEGPPPQGPHP----PVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
               P    P      P P    P    P    +         A           P P  
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA---AASREDAPAAAAPPAPEA 532

Query: 332 PPPQGSPPQRPPPSR 346
            PP  +P    P +R
Sbjct: 533 RPP--TPAAAAPAAR 545

Length = 830

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 16/90 (17%)

Query: 248 GISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLM 307
           G  + N       P    +  P      +E  P  +G   P P   G   P P P+    
Sbjct: 51  GADDTNGTDPDDEPEEEEEPEPEEEGE-EEPEPEEEGEEEPEPEETGEEEPEPEPE---- 105

Query: 308 YENLIVVAGGISETEPQVGPPPPVPPPQGS 337
                       E EP+  P P   P  G+
Sbjct: 106 -----------PEPEPEPEPEPEPEPEPGA 124

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 20/105 (19%), Positives = 23/105 (21%), Gaps = 15/105 (14%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 262
             + +     P    P  +   P   PPQ              A   S A     P  P 
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG----------ASAPSPAADDPVPLPPE 744

Query: 263 PPPQGAP-----PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 302
           P     P      P PP            PP  PP          
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789

Length = 824

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 33/147 (22%), Positives = 38/147 (25%), Gaps = 26/147 (17%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP----PPQGAP 269
            P   PP    P     Q P              G   +    GPP P P     P G P
Sbjct: 187 QPQSYPPNEPLPSSMAMQPP------------YSGAPPSQQFYGPPQPSPYMYGGPGGRP 234

Query: 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG--------ISET 321
             G P  ++ PP QG         GPPP          Y                  +  
Sbjct: 235 NSGFPSGQQPPPSQGQEGY--GYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATV 292

Query: 322 EPQVGPPPPVPPPQGSPPQRPPPSRHP 348
            PQ  P    P   G        +R P
Sbjct: 293 LPQALPMSSAPMSGGGSGSPQSGNRVP 319

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 265 PQGAP----PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 320
           PQG P    PPG  L    PPP      VPP   P    P P+        ++ A  +  
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHP 234

Query: 321 TEPQVGPPPPVPPPQGSPPQRP--PPSRHPLLP 351
                  PP  P        +P  P SRHP   
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSS 267

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 18/92 (19%), Gaps = 23/92 (25%)

Query: 250 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE 309
           S  + H   P P   P    P   P  +         P   P Q    P P         
Sbjct: 192 SHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNP------ 245

Query: 310 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQR 341
                               P    QG    R
Sbjct: 246 -----------------AQQPPQTEQGHKRSR 260

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 204 KSESDSQVGPPPPVPPPEGH--PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 261
           K     +V   P  P P+G    P V P    V  L  +    VA  I +A       + 
Sbjct: 31  KKHRQDEVAAIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVD 90

Query: 262 ----VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 302
                 PP  + P G P+  + P P  P    P    P  P P P
Sbjct: 91  PQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKP 135

Length = 226

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 27/167 (16%), Positives = 33/167 (19%), Gaps = 14/167 (8%)

Query: 214 PPPVPPPEGHPPPVHPPQGP-VRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
                   G    +           +               P  GP    P  +    P 
Sbjct: 30  DAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPT 89

Query: 273 PPL-----------QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 321
             L               PP      P PPP  PP   PP     + E L  V       
Sbjct: 90  WSLSTLAPASPAREGSPTPPGPSSPDP-PPPTPPPASPPPSPAPDLSEMLRPVGSP-GPP 147

Query: 322 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 368
                P     P   +            L   + TA        E P
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

Length = 1352

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.8 bits (100), Expect = 7e-04
 Identities = 38/165 (23%), Positives = 45/165 (27%), Gaps = 25/165 (15%)

Query: 213 PPPPV----------PPPEGHPPPVH----------PPQGPVRNLMYENLILVAGGISEA 252
           PPPP            PP  HPPP+            P  P      ++L   A     +
Sbjct: 382 PPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHS 441

Query: 253 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLI 312
             H GPP            G P    GPPP  P    P    PP      +         
Sbjct: 442 GLHSGPPQSPFAQHPFTSGGLP--AIGPPPSLP-TSTPAA--PPRASSGSQPPGSALPSS 496

Query: 313 VVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA 357
               G     P +            P   PPP R P   PT +  
Sbjct: 497 GGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNT 541

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 52/145 (35%), Positives = 62/145 (42%), Gaps = 15/145 (10%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG-----PPLPVPPPQG 267
           PPPP+P   G PPP  PP      +     +    GI    P  G     PP P+P   G
Sbjct: 2   PPPPLPGGVGIPPP--PPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAG 59

Query: 268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 327
            PPP P       PP    PP+P   G PPP P P G  +      + GG +     V P
Sbjct: 60  IPPPPPLPGATAIPPP---PPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAA-----VPP 111

Query: 328 PPPVPPPQGSPPQRPPPSRHPLLPP 352
           PPP+P   G PP  PP    P +PP
Sbjct: 112 PPPLPGGPGVPPPPPPFPGAPGIPP 136

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 16/100 (16%)

Query: 254 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK------GNLM 307
                 LP P PQ  PPP PP   E            P  G      P +         +
Sbjct: 260 LPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADL 319

Query: 308 YENLI----------VVAGGISETEPQVGPPPPVPPPQGS 337
            +N++            AGG  ++  +  P        GS
Sbjct: 320 PDNILATLQTVQRRRGRAGGEQKSNHRGRPLRSRLGKPGS 359

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 34/160 (21%), Positives = 48/160 (30%), Gaps = 28/160 (17%)

Query: 214 PPPVPPPEG---HPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP------ 264
           PP  PP       PPP    +G    ++Y++ I+    +           P  P      
Sbjct: 481 PPQSPPTVAIKPAPPPSRRRRGAC--VVYDDDIIEVIDVETTEEEESVTQPAKPHRKVQD 538

Query: 265 ---------PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 315
                     +  PP   P  + GPP   P    PP  GP     P  G           
Sbjct: 539 GFQRSGRRQKRATPPKVSP-SDRGPPKASPPVMAPPSTGPRVMATPSTGP-------RDM 590

Query: 316 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI 355
              S    Q       PP  G   ++PP S    + P+ +
Sbjct: 591 APPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVV 630

Length = 1000

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 26/121 (21%), Positives = 32/121 (26%), Gaps = 34/121 (28%)

Query: 251 EANPHVGPPLPVPPPQGA-------PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 303
           +  P     LP  PP+GA           P L     P     P  P     P P+ PPK
Sbjct: 54  DMMPAATQALPTQPPEGAAEAVRAGDAAAPSLD----PATVAPPNTPVEP-EPAPVEPPK 108

Query: 304 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPY 363
                                   P   P P+  P Q+      P   P  +      P 
Sbjct: 109 P----------------------KPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Query: 364 G 364
           G
Sbjct: 147 G 147

Length = 226

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 41.8 bits (97), Expect = 8e-04
 Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 258 PPLPVPPPQ--GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 315
           P    P P      P  P      P P    PP   P  PPP + P             A
Sbjct: 86  PACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPAR--------PA 137

Query: 316 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 358
                +  Q  P PP+P P+ +P  +P    + L PP    AS
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAAS 180

Length = 280

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 40/199 (20%), Positives = 50/199 (25%), Gaps = 62/199 (31%)

Query: 213  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
             P   P P+  PPP   PQ P                    P   PP P PP      P 
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPP-------------QPQPPPPPPPRPQPPLAPTTDPA 2950

Query: 273  PPLQEEGPPPQG-------------------PHPPVPPPQGPPPPL-------------- 299
               +  G  PQ                    P P    P    PPL              
Sbjct: 2951 GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASS 3010

Query: 300  --------PPPKGNLM-------YENLIVVAGGISETEP-QVGPPPPVPPPQGSPPQRPP 343
                    PPP             E+    +   S++E   +    P+PP    P    P
Sbjct: 3011 LALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEP 3070

Query: 344  PSRHPLLPPTKITASVEGP 362
                P     +  +S  GP
Sbjct: 3071 DPATPEAGARESPSSQFGP 3089

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 259  PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 318
                P P G  PP P   +  P P    P + P +    P+ P         ++    G+
Sbjct: 2492 AGAAPDPGGGGPPDP---DAPPAPSRLAPAILPDEPVGEPVHP--------RMLTWIRGL 2540

Query: 319  SE--TEPQVGPPPPVPP--PQGSPPQRPPPSRHPLLPP 352
             E  ++    PPPP+PP  P  +P +  PP R    P 
Sbjct: 2541 EELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPS 2578

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 23/111 (20%), Positives = 27/111 (24%), Gaps = 24/111 (21%)

Query: 258 PPLPVPPPQGAPPPG-PPLQEEGPPPQGPHPPVPP----PQGPPPPLPPPKGNLMYENLI 312
            P P  P   AP P  P       P       +PP     +   PP  PP          
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP---------- 414

Query: 313 VVAGGISETEPQVGPPPPVPPP---QGSPPQRPPPSRHPLLPPTKITASVE 360
                     P V   P   P       P    P    P  P  +  A + 
Sbjct: 415 ------RPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIA 459

Length = 585

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 29/110 (26%), Positives = 34/110 (30%), Gaps = 10/110 (9%)

Query: 252 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHP-------PVPPPQGPPPPLPP--P 302
           A      P P P  Q  PP G P+  +  P             P   PQ  P P PP  P
Sbjct: 187 AALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQP 246

Query: 303 KGNLMYENLIVVAGGISETEPQVGPPPPVPPP-QGSPPQRPPPSRHPLLP 351
           +                      GP PP+P   Q  P     PS +P  P
Sbjct: 247 QTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQP 296

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 20/100 (20%), Positives = 25/100 (25%), Gaps = 10/100 (10%)

Query: 263 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE 322
           P PQ  PP     Q   P P         P G       P G+         A       
Sbjct: 51  PSPQAPPPVAQLPQP-LPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAG 109

Query: 323 PQVGPPP----PVPPPQG-----SPPQRPPPSRHPLLPPT 353
           P +   P    PV  P       +      P++   L   
Sbjct: 110 PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQL 149

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 258 PPLPVPPPQGAPPPGPPLQEEGPPPQG-------PHPPVPPPQGPPPPLPPPK----GNL 306
           P  P P P  AP P  P +++ P P          +  +  P  P  P+PPP     GN 
Sbjct: 283 PVEPEPLPVPAPVPPTP-EDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNP 341

Query: 307 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 352
             ENL          E  V P PP   P GS  +      +P  PP
Sbjct: 342 NEENLFPPGDDEVPDESNVPPNPPN-VPGGSNSEFSSDVENPPNPP 386

Length = 576

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 50/139 (35%), Positives = 57/139 (41%), Gaps = 19/139 (13%)

Query: 211 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG-----PPLPVPPP 265
           + PPPP+P     PPP  PP   V  +     +  A  I    P  G     PP P+P  
Sbjct: 36  IPPPPPLPGGAAIPPP--PPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGG 93

Query: 266 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQV 325
            G PPP PPL      P  P PP+P   G PPP PP  G          A GI    P +
Sbjct: 94  AGIPPPPPPLPGGAAVP--PPPPLPGGPGVPPPPPPFPG----------APGIPPPPPGM 141

Query: 326 GPPPPVPPPQGSPPQRPPP 344
           G PPP P   G P     P
Sbjct: 142 GSPPPPPFGFGVPAAPVLP 160

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 356 TASVEGPYGHEVPYHLMY-ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 414
              V GPYG+  P   M   +L+L+AGG+G++P  ++L   L+ ++        N+ +++
Sbjct: 90  IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVL---LYAMDNRWKY--GNITLIY 144

Query: 415 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 474
             K   +L     FY E I    ++  N++    VTR+ E P      H      I  V 
Sbjct: 145 GAKYYEDLL----FYDELIKD-LAEAENVKIIQSVTRDPEWP----GCHGLPQGFIERVC 195

Query: 475 SGCAMSVLVGTGNNV 489
            G    +      + 
Sbjct: 196 KGVVTDLFREANTDP 210

Length = 289

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 30/129 (23%), Positives = 39/129 (30%), Gaps = 20/129 (15%)

Query: 240 ENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPL 299
             + L+A  + EA      P P PP +   PP  P     P P  P     P + P  P 
Sbjct: 39  LAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98

Query: 300 PPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQ----RPPPSRHPLLPPTKI 355
           P PK                          P P P+  P +     P     P  PP+  
Sbjct: 99  PKPK----------------PKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAA 142

Query: 356 TASVEGPYG 364
           +AS      
Sbjct: 143 SASGAATGP 151

Length = 244

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 219 PPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 278
           P EG      P   P       N +       E         P          G PL + 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRL-------EKEVRSLRSAPTAAA---TAAGAPLPDF 395

Query: 279 GPPPQGPHPPVPPPQGPPPPLPPP 302
            P P+GP  P P      PPL  P
Sbjct: 396 DPRPRGPPAPEPARSAEAPPLVAP 419

Length = 504

>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 246 AGGISEANPHVGPPLPVPPPQGAPPPGP--PLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 303
           A G     P   P  PV P +      P  PL    PP   PH P+P     PPP+  P 
Sbjct: 127 ASGFKPPTPPSTPCSPVNPQETVRQLQPSGPLSNSSPPS--PHTPLPNQSPLPPPMSSPD 184

Query: 304 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH---PLLPP 352
            +   E+       +SE       P P PP +GS   RPP  R    PL+P 
Sbjct: 185 SSYPSEHR--FQRQLSEP----CLPFPPPPGRGSRDGRPPYHRQMSEPLVPY 230

The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites. Length = 336

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 25/107 (23%)

Query: 259 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 318
           P  + PPQ   PP  P+ E  P P+ P P  P       P P PK               
Sbjct: 55  PADLEPPQAVQPPPEPVVEPEPEPE-PIPEPPKEAPVVIPKPEPK--------------- 98

Query: 319 SETEPQVGPPP-------PVPPPQGSPPQRPPPSRHPLLPPTKITAS 358
              +P+  P P         P  +  P +  P S      P + T+S
Sbjct: 99  --PKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSS 143

Length = 246

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 418
           +EGP G           LIL+AGG G +P  +IL  +L + ++      R + + W  + 
Sbjct: 84  IEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSK------RPIHLYWGART 137

Query: 419 SNELSLLS 426
             +L L  
Sbjct: 138 EEDLYLDE 145

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 24/104 (23%), Positives = 27/104 (25%), Gaps = 18/104 (17%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 262
           S+S S S     PP P     PP   PP                            P P 
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTA----------------TAPPPTPPPP 555

Query: 263 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 306
           PP         P Q   P    P PP+P    P P        +
Sbjct: 556 PPTATQASSNAPAQI--PADSSPPPPIPEEPTPSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 17/94 (18%), Positives = 19/94 (20%), Gaps = 19/94 (20%)

Query: 210 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269
           +          +  PPP   P  P                    P    P P        
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPP-------------------APTPPLPQPTATAPPPT 551

Query: 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 303
           PP PP          P         PPP    P 
Sbjct: 552 PPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Length = 620

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 23/114 (20%), Positives = 30/114 (26%), Gaps = 7/114 (6%)

Query: 245 VAGGISEANPHVGPP---LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 301
           VA    + +P   PP   LP P PQ  P         G   Q   P   P   PP     
Sbjct: 44  VAEFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFAL 103

Query: 302 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQR---PPPSRHPLLPP 352
           P G      +    G +   +  V             P +       +     P
Sbjct: 104 PAGPAG-PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAP 156

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 28/161 (17%), Positives = 36/161 (22%), Gaps = 22/161 (13%)

Query: 211 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 270
           V   PPV   +       PP  P                    P  G P+  P P+G P 
Sbjct: 340 VTQTPPVASVDV------PPAQPTVAWQ-----------PVPGPQTGEPVIAPAPEGYPQ 382

Query: 271 ---PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 327
                 P  +   P Q P  P  P   P    P  +    Y              P    
Sbjct: 383 QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQP--YYAPAPEQPAQQPYYAPAPEQ 440

Query: 328 PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 368
           P      Q    Q     +                  ++ P
Sbjct: 441 PVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP 481

Length = 1355

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 31/135 (22%), Positives = 41/135 (30%), Gaps = 13/135 (9%)

Query: 249 ISEA-NPHVGPPL----PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG--PPPPLPP 301
           ISE  +  +G P+     V P  G P P PP       P+ P P   P +G   P     
Sbjct: 70  ISETLSRELGRPIRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDR 129

Query: 302 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP---PSRHPLLPPTKITAS 358
           P G    + L          + +  P            Q+     P R P   P      
Sbjct: 130 PPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPE 189

Query: 359 VE---GPYGHEVPYH 370
            E    PY    P +
Sbjct: 190 QERDREPYDAGRPEY 204

Length = 617

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 16/108 (14%)

Query: 202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 261
            S S   S   PP    P +  PPPV  P+ PV +                +      LP
Sbjct: 20  WSTSGFSSCFSPPESAHPDD--PPPVGDPRPPVVDTP-----------PPVSA--VWVLP 64

Query: 262 VPPPQGAPPPGPPLQEEGP-PPQGPHPPVPPPQGPPPPLPPPKGNLMY 308
            P    APPP P     GP  P  P  P  P + PP P P P+  L++
Sbjct: 65  PPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPRPQRRLLH 112

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 256 VGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP--PPLPPPKGNLMYENLIV 313
           V  P     P+  P P PP     PPP  P  P   P  P    P    + + + E L+ 
Sbjct: 258 VLLPRATRLPEPEPQPPPP-----PPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMF 312

Query: 314 VA 315
            A
Sbjct: 313 DA 314

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 29/107 (27%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 258 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG 317
              P P P   P P P    E P       P P P+  P P P PK          V   
Sbjct: 63  AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK---------PVKKV 113

Query: 318 ISETEPQVGPPPPVP--PPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
             + + +V P  P P  P + + P RP  S         +T+   GP
Sbjct: 114 EEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGP 160

Length = 246

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 38/208 (18%), Positives = 57/208 (27%), Gaps = 26/208 (12%)

Query: 173 SSSPLEGKYHSSVLIKVLGEWTENLRDYILS----KSESDSQVGPPPPVPPPEGHPPPVH 228
            SS L+G+  +  L + L      + D ++     +  + S+   P    P +     + 
Sbjct: 443 PSSGLDGEGLAETLKQELNTSLSQVVDTVVKRFVHQRRALSKQAKPERAAPEQLFKDLML 502

Query: 229 PPQ-----GPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG-APPPGPPLQEEGPP- 281
           P Q      P  + + +                  P    PP   A      L       
Sbjct: 503 PSQMLDRKSPRTHTVNDRGQCFGDPDISTAAMFIIP---KPPDSFANVAAAALYNSPFCM 559

Query: 282 PQGPHPPVPPPQGPPPPL---PPPK------GNLMYENLIVVAGGISETEPQVG---PPP 329
           PQ P P   P Q     L   P  K        +    +  +        P  G    P 
Sbjct: 560 PQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILALRDAVGPAAGTHHQPL 619

Query: 330 PVPPPQGSPPQRPPPSRHPLLPPTKITA 357
                  S    PPP RHP   P  +  
Sbjct: 620 HPSSLSASMGFHPPPFRHPFPLPLTVAI 647

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 251 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP-PPLPPP 302
           EA P   PP PV   Q  PPP   +    PP   P P  P    PP P  PPP
Sbjct: 139 EALPQPPPPAPVVMMQ--PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPP 189

Length = 274

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 24/96 (25%), Positives = 26/96 (27%), Gaps = 28/96 (29%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
           G  P     E  P     P GP                       G P P   P   PP 
Sbjct: 124 GANPVTATGEPVPQMPASPPGP----------------------EGEPQPGNTPVSFPPQ 161

Query: 272 GPPLQEEGPPPQGPHP---PVPPPQGPPPPLPPPKG 304
           G       PPP   +P     PPPQ     +P P  
Sbjct: 162 G---SVAVPPPTAFYPGNGVTPPPQVTYQSVPVPNR 194

Length = 475

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 2/82 (2%)

Query: 269 PPPGPPLQ--EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 326
           P P   L+  +EGPP  G     PP  G  P  P              AGG +     V 
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437

Query: 327 PPPPVPPPQGSPPQRPPPSRHP 348
                     +P   P P+   
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVRL 459

Length = 598

>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 21/102 (20%), Positives = 26/102 (25%), Gaps = 23/102 (22%)

Query: 251 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP------QGPHPPVPPPQGPPPPLPPPKG 304
                 GPP P P P     P   L +E            P  P P     P    P   
Sbjct: 120 SLPTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAPLFP-PLDARLPAFAAPIDA 178

Query: 305 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 346
               E  +            V P  P+P P+ +P        
Sbjct: 179 ----EPTM------------VPPFVPLPAPEPAPAPASQAPS 204

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 396

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 27/96 (28%)

Query: 210 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV-GPPLPVPPPQGA 268
           Q    P  PPP  +      PQ                      P++ GP  P+ PP G 
Sbjct: 35  QAYYGPRPPPPYFNSSVASSPQPH--------------------PYMWGPQQPMMPPYGT 74

Query: 269 PPPGPPLQEEGPPPQGP--HPPVPPPQGPPPPLPPP 302
           PPP   +     PP G   HP +PP   P  P   P
Sbjct: 75  PPPYAAMY----PPGGVYAHPSMPPGSHPFSPYAMP 106

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 41/189 (21%), Positives = 51/189 (26%), Gaps = 54/189 (28%)

Query: 212 GPPPPVPPPEGHPP--PVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269
           G   P PPPE   P     PP G            V G      P   P  P PPP    
Sbjct: 274 GATGPPPPPEAAAPNGAAAPPDG------------VWGAALAGAPLALPAPPDPPPP--A 319

Query: 270 PPGPPLQEEGP-------PPQGPH-------------PPVPPPQG---------PPPPLP 300
           P G   +E+          P                 P   PP            P    
Sbjct: 320 PAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRAS 379

Query: 301 PP---KGNLMYENLIVVAGGISETEPQVGPP----PPVPPPQGSPPQRPPPSRHPLLPPT 353
            P   + +  +       G   + + +   P     P P P   P   PPP   P   P+
Sbjct: 380 LPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP--LPS 437

Query: 354 KITASVEGP 362
               S +GP
Sbjct: 438 AEPGSDDGP 446

Length = 3151

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 34/165 (20%), Positives = 42/165 (25%), Gaps = 35/165 (21%)

Query: 207 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 266
              Q   PP  P  + +PPP       V           +G   E +P+   P   PP +
Sbjct: 149 QQQQYQSPPQQPQYQQNPPPQAQSAPQV-----------SGLYPEESPY--QPQSYPPNE 195

Query: 267 GAPP---PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 323
             P      PP     P  Q   PP P P     P   P                     
Sbjct: 196 PLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGF---------------PS 240

Query: 324 QVGPPPPVPP----PQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364
              PPP          G PP +          P   + S    Y 
Sbjct: 241 GQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYP 285

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 22/93 (23%), Positives = 23/93 (24%), Gaps = 25/93 (26%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
           G P P     G P P   P  P                        PP   PP   A P 
Sbjct: 380 GAPAPPSAAWGAPTPA-APAAP------------------------PPAAAPPVPPAAPA 414

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 304
            P      P P  P    PP +   P      G
Sbjct: 415 RPAAARPAPAPAPPAAAAPPARSADPAAAASAG 447

Length = 576

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 24/77 (31%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 259 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 318
             PV    G  PP        P P       PPP GPPPP  P    +            
Sbjct: 37  AQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTP--PPPNSG 94

Query: 319 SETEPQVGPPPPVPPPQ 335
              +PQ  PPP   PPQ
Sbjct: 95  YMADPQEPPPPYPGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWA 415
              V+GPYG    +       + +AGGIGI+PF+++L  +  R ++        V + + 
Sbjct: 299 KLEVDGPYGK-FDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD------PPVHLFYC 351

Query: 416 VKKSNE 421
            +   E
Sbjct: 352 SRNWEE 357

Length = 438

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 20/108 (18%)

Query: 212 GPPPPVPPPEGHPPP--VHPPQGPVRNLMYENLILVAGGISEANPHV----GPPLPV--- 262
           G P P       P P    PP+  V N     L+L     +++  +V      P      
Sbjct: 97  GRPDPAATGGLAPGPEFAWPPRVAVVN---GTLVLREARETDSGMYVLSVSRAPNSTAAR 153

Query: 263 --------PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 302
                   P P   PP G P  ++    +   P  P P   PPP P P
Sbjct: 154 AVVFLVVGPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHP 201

Length = 540

>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 38/140 (27%), Positives = 41/140 (29%), Gaps = 47/140 (33%)

Query: 214 PPPVPPPEGHPPPVHPPQG--PVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA--- 268
           PP  P P   PPP  P  G  P  N  +E                   L + PP G    
Sbjct: 53  PPTTPHPSSQPPPCPPSPGHPPQTNDTHE-----------------KDLALQPPPGGKKK 95

Query: 269 ----PPPGPPLQEEGPPPQGP--------HPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 316
                    P Q    P QGP        H P  PP    P  PPP G            
Sbjct: 96  EKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTP--PPPGGE----------- 142

Query: 317 GISETEPQVGPPPPVPPPQG 336
           G  E  P  GP P     +G
Sbjct: 143 GEVEGGPSPGPGPGPLDQEG 162

Length = 200

>gnl|CDD|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 587 TKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS 637
           + +     +G RP++KE+    +K+  +  +GV  CGPPSL      E+R+
Sbjct: 102 SGTRVEFHFG-RPNWKEVLKDIAKQHPNNSIGVFCCGPPSL----VDELRN 147

Length = 149

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 22/105 (20%), Positives = 25/105 (23%), Gaps = 4/105 (3%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 262
                D       P  PP     P                   A G +       P    
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881

Query: 263 PPPQGAPPPGPPLQ--EEGPPPQGPHPPVPPPQGPPPPL-PPPKG 304
            P   APP           P P+   P      GP PP  P P+G
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPR-PAPRVKLGPMPPGGPDPRG 925

Length = 1352

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 258 PPLPVPPPQGAPPPGPPLQEEG--PPPQGPHPPVPPPQGPPPPLPPP 302
           P L     Q  PPP       G  PPP         P  P  P  PP
Sbjct: 48  PGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPP 94

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 26/89 (29%), Positives = 28/89 (31%), Gaps = 15/89 (16%)

Query: 249 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 308
           ISE      P  P P P  +PPP P         Q    P PPP    PP+P P      
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP------ 418

Query: 309 ENLIVVAGGISETEPQVGPPPPVPPPQGS 337
                       TEP   PP        S
Sbjct: 419 ---------AEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 22/145 (15%)

Query: 73  FQLFFYTHQLYVVFVVFLALHV----GDFVFSMAAG----------GIFLFILDRFLRFC 118
           ++ +   H+L  V  +   LH          S  A           G+   I   F  F 
Sbjct: 152 YENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFG 211

Query: 119 QSRR-TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQV-RELSWLQWHPFSVSSSP 176
           +S      V +       T+E+ +       Y A  F FL++  E   ++ HPF+++ S 
Sbjct: 212 RSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACS- 270

Query: 177 LEGKYHSSV--LIKVLGEWTENLRD 199
                 S +   IK LG++T+ L+D
Sbjct: 271 ---HEGSELRFSIKALGDFTKTLKD 292

Length = 438

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 12/60 (20%), Positives = 15/60 (25%), Gaps = 1/60 (1%)

Query: 246 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGN 305
           A            P P       P P P  +     P  P P   P +   P    P  +
Sbjct: 203 ANAAPAEPAEEEAPAPSEAGS-EPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSS 261

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 16/83 (19%)

Query: 244 LVAGGISEANPHVGP----------PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ 293
           +V   ++ A+    P                      P          P  P  P   P 
Sbjct: 258 IVRAFLTWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAA----AAAPAPPPNPPATPP 313

Query: 294 GPPPPLPPPKGNLMYENLIVVAG 316
            PP      +G+     ++VV  
Sbjct: 314 EPPA--RRGRGSAALWFVVVVLA 334

Length = 656

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 41/209 (19%), Positives = 52/209 (24%), Gaps = 39/209 (18%)

Query: 193 WTENLRDYILSKSESDSQVGP--PPPVP-PPEGHPPPVHPPQGPVRNLMYENLILVAGGI 249
           + E L    L  + SD+      P P P  P     PVH P     N        VA   
Sbjct: 46  YDEELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAA 105

Query: 250 SEANPHVGPPLPVPPPQGAPPPGP-----------------------PLQEEGPPPQGPH 286
            +    +    PV  P+ AP   P                       P QE         
Sbjct: 106 EDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQ 165

Query: 287 --------PPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP----PVPP 333
                    PVP  P   P    P     +   L   A    + + Q+           P
Sbjct: 166 LFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALP 225

Query: 334 PQGSPPQRPPPSRHPLLPPTKITASVEGP 362
               P   PP    P  P      +   P
Sbjct: 226 QILPPAALPPIVVAPAAPAALAAVAAAAP 254

Length = 559

>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1

 Score = 38.3 bits (88), Expect = 0.004
 Identities = 35/143 (24%), Positives = 44/143 (30%), Gaps = 5/143 (3%)

Query: 211 VGPPPPVPPPEGHPPPVHPPQ--GPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268
           V PP  +P P+   PPV PPQ   P    ++         +  A            P   
Sbjct: 25  VLPPQSLPAPQNPLPPVTPPQMQVPQNVSLHAAHDAAQKAVEAAKNQKQGLKNRFSPITP 84

Query: 269 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 328
               P +   GPP      PV PP  P  P P P   L     +    G++    Q   P
Sbjct: 85  LQQAPIV---GPPFSQAPAPVLPPGPPGAPKPSPASQLSLVTTVSPGSGLAPVLTQQQVP 141

Query: 329 PPVPPPQGSPPQRPPPSRHPLLP 351
           P  P      P        P  P
Sbjct: 142 PQQPQQPSMVPTPALGGVQPPQP 164

The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA, domain, this SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This The function of the SD domains is unclear. Length = 168

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 25/88 (28%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           P   P     P    P Q  +    +    L         P    P     P    PP  
Sbjct: 62  PAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVH 121

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPP 301
           P+     PPQ P PP+ P Q P PPL P
Sbjct: 122 PIPP--LPPQPPLPPMFPMQ-PLPPLLP 146

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	658
PLN02631	699	ferric-chelate reductase	100.0
PLN02292	702	ferric-chelate reductase	100.0
PLN02844	722	oxidoreductase/ferric-chelate reductase	100.0
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	100.0
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.96
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.96
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	99.91
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.9
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	99.9
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.9
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.9
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.9
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.89
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.89
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.89
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.89
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.88
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	99.88
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	99.88
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.88
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.88
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.87
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.87
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.87
PRK08051	232	fre FMN reductase; Validated	99.87
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	99.87
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.87
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.87
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	99.87
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.87
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	99.86
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.86
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.86
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	99.85
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.84
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.84
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	99.84
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.84
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.84
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.83
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.83
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	99.83
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.82
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.82
PRK10926	248	ferredoxin-NADP reductase; Provisional	99.81
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.81
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	99.81
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.81
PTZ00274	325	cytochrome b5 reductase; Provisional	99.81
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	99.81
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	99.8
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	99.8
PRK05802	320	hypothetical protein; Provisional	99.8
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	99.79
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	99.79
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.78
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	99.77
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	99.76
PRK05713	312	hypothetical protein; Provisional	99.76
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.76
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	99.76
PLN02252	888	nitrate reductase [NADPH]	99.75
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	99.75
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	99.74
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.7
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.69
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.69
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	99.67
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.6
cd06193	235	siderophore_interacting Siderophore interacting pr	99.59
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.38
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.29
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.28
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.23
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.23
PRK06214	530	sulfite reductase; Provisional	99.2
cd06203	398	methionine_synthase_red Human methionine synthase	99.17
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.07
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.06
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	98.97
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	98.93
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	98.89
PF01794	125	Ferric_reduct: Ferric reductase like transmembrane	98.83
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	98.78
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.53
KOG3378	385	consensus Globins and related hemoproteins [Energy	97.85
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	97.79
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	97.55
PRK05419	205	putative sulfite oxidase subunit YedZ; Reviewed	97.09
COG2717	209	Predicted membrane protein [Function unknown]	95.82
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	95.0
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	94.59
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	93.41
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	92.98
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	92.47
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	89.57
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	89.34
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	89.07
PRK15313	955	autotransport protein MisL; Provisional	88.21
PRK08051	232	fre FMN reductase; Validated	86.14
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	84.63
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	83.0
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	82.95
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	82.54
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	81.54
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	80.92
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	80.72
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	80.66

>PLN02631 ferric-chelate reductase

Probab=100.00  E-value=6.6e-88  Score=769.62  Aligned_cols=489  Identities=32%  Similarity=0.589  Sum_probs=407.1

Q ss_pred             chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcchHHHHHHH
Q 006160            9 WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQ   81 (658)
Q Consensus         9 ~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE~F~~~H~   81 (658)
                      ..+|||+|       +.|+++|+++|...+.+ .+...|....+.+++|++|++++++|+++|++++||++||+|+++|+
T Consensus       189 i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~-~~~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~RRr~YE~F~~~Hi  267 (699)
T PLN02631        189 IKYHIWLGHVSNFLFLVHTVVFLIYWAMINKL-METFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRKKFELFFYTHH  267 (699)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hhhhhcccccchHHHHHHHHHHHHHHHHhccHHHHhhhhhHHHHHHH
Confidence            35999999       35788888888877776 44566765455679999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCC
Q 006160           82 LYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRE  161 (658)
Q Consensus        82 l~ilflv~l~~H~~~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~  161 (658)
                      ++++|++++++|++..+.+|+++++++|++||++|.+|.....++++++.++++++++++++++.++|+||||++|++|.
T Consensus       268 llaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~  347 (699)
T PLN02631        268 LYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPS  347 (699)
T ss_pred             HHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHHhceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEecc
Confidence            99888999999997666677889999999999999999877788889999999999999998888999999999999999


Q ss_pred             CCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhh
Q 006160          162 LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYEN  241 (658)
Q Consensus       162 is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (658)
                      .+++|||||||+|+|++++++++++||+.|+||++|++.+....                                    
T Consensus       348 ~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g------------------------------------  391 (699)
T PLN02631        348 ISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSI------------------------------------  391 (699)
T ss_pred             CCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCC------------------------------------
Confidence            99999999999999864458999999999999999988763210                                    


Q ss_pred             hhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccc
Q 006160          242 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET  321 (658)
Q Consensus       242 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (658)
                                                                                                      
T Consensus       392 --------------------------------------------------------------------------------  391 (699)
T PLN02631        392 --------------------------------------------------------------------------------  391 (699)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhcc
Q 006160          322 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINE  401 (658)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~  401 (658)
                                                     +.+++.+|||||....+..+++++||||||+||||++|++++++++..+
T Consensus       392 -------------------------------~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~  440 (699)
T PLN02631        392 -------------------------------DSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQN  440 (699)
T ss_pred             -------------------------------CeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccc
Confidence                                           2347899999997654556789999999999999999999999976432


Q ss_pred             CCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccc-cccccccCCCCCCcee
Q 006160          402 GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHK-TMSSSIYPVPSGCAMS  480 (658)
Q Consensus       402 ~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~-~~v~~~~P~~~d~~~~  480 (658)
                      .. .+.++|+|+|++|+.+|+.+.+++.....++...++.++++++||||++++. ++....+ ....+++|.++|.+++
T Consensus       441 ~~-~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  518 (699)
T PLN02631        441 PS-TKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP-ETTDDHRLLQTKWFKPQPLDSPIS  518 (699)
T ss_pred             cc-cCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCCCc-ccccccccccccccccCCCCCCce
Confidence            11 2345899999999999999777765422222223456899999999987653 2222211 2236789999999999


Q ss_pred             EeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCC-----CcchhhHHHHHHHHHhhheeeccceeeeeehhhhhhc
Q 006160          481 VLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKS  555 (658)
Q Consensus       481 ~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~-----~~~~~~~~~l~~~~~~~~v~i~g~~~~~~w~~~~~~~  555 (658)
                      .+.||++|+|++++|++||+|||+++|+++||||||+|     +|+||.+++++++..|++|+ .||+++.+||.+++++
T Consensus       519 ~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~  597 (699)
T PLN02631        519 PVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLWDMFLGSVCIF-ISSSIVFLWRKKQNKE  597 (699)
T ss_pred             eeecCCccHHHHHHHHHHHHHHHHHHHhhheeEecccCCCCCcccchHHHHHHHHHHHHhhee-ccceeeeeechhhccc
Confidence            99999999999999999999999999999999999999     78899999999966555432 2888888998887776


Q ss_pred             ccccc-CCCCccccccccc-------cccccccccccccCcccceeecCCCCCHHHHHHhhhccCCCceEEEEEeCChhh
Q 006160          556 SAREN-YKDDSIEVDNAQN-------VGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSL  627 (658)
Q Consensus       556 ~~~~~-~~~~~i~~~~~~~-------~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~m  627 (658)
                      ..+++ +|+|.+|++++..       +.+.|+|+.+.+++.+.+++|||+|||+++|+.|..   ++++|||++|||++|
T Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~---~~~~vgvlv~gp~~~  674 (699)
T PLN02631        598 GDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILLEAE---GSEDVGVMVCGPRKM  674 (699)
T ss_pred             cccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeecCCCCHHHHHHhcc---CCCceeEEEECcHHH
Confidence            66554 7888888666522       336788888888999999999999999999998443   346999999999999


Q ss_pred             HHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160          628 QSSVAKEIRSHSLMRECHDPIFHFHSHSFD  657 (658)
Q Consensus       628 ~~~V~~~~~~~~~~~~~~~~~~~fhsesF~  657 (658)
                      +++||+.|++.+    ++|  |||||.|||
T Consensus       675 ~~~va~~c~s~~----~~~--~~f~s~sf~  698 (699)
T PLN02631        675 RHEVAKICSSGL----AKN--LHFEAISFN  698 (699)
T ss_pred             HHHHHHHHhcCC----Ccc--eeEEeeccc
Confidence            999999999955    445  999999998

>PLN02292 ferric-chelate reductase

Probab=100.00  E-value=1.3e-87  Score=768.61  Aligned_cols=486  Identities=32%  Similarity=0.580  Sum_probs=405.8

Q ss_pred             ccccc--chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcch
Q 006160            4 DTMYG--WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQ   74 (658)
Q Consensus         4 ~~~~~--~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE   74 (658)
                      |-.|.  ..+|||+|       +.|+++|+++|..++.. .++..|...+..+++|++|++++++|+++|++++||++||
T Consensus       199 G~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~-~~~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~YE  277 (702)
T PLN02292        199 GLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQV-SQMLEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRRFFE  277 (702)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhccccchHHHHHHHHHHHHHHHHHHhhHHHHhcccH
Confidence            34444  45899999       35788888888888776 6667887767778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcE
Q 006160           75 LFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSF  154 (658)
Q Consensus        75 ~F~~~H~l~ilflv~l~~H~~~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~  154 (658)
                      +|+++|++++++++++++|+...+..|+++++++|++||++|++|++...++++++.++++++++++++++.++|+||||
T Consensus       278 ~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~  357 (702)
T PLN02292        278 VFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNFSKNPMLMYSPTSI  357 (702)
T ss_pred             hHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCe
Confidence            99999999988888999999755555678899999999999999988788999999999999999999988899999999


Q ss_pred             EEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 006160          155 FFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPV  234 (658)
Q Consensus       155 v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (658)
                      +|+++|..+++|+||||++|+|.+++++++++||+.|+||++|++.+...+.                            
T Consensus       358 vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~gd~----------------------------  409 (702)
T PLN02292        358 MFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSSSDQ----------------------------  409 (702)
T ss_pred             EEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCCCCc----------------------------
Confidence            9999999889999999999998544588999999999999999887632110                            


Q ss_pred             ccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhh
Q 006160          235 RNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVV  314 (658)
Q Consensus       235 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (658)
                                                                                                      
T Consensus       410 --------------------------------------------------------------------------------  409 (702)
T PLN02292        410 --------------------------------------------------------------------------------  409 (702)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHH
Q 006160          315 AGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSD  394 (658)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~  394 (658)
                                                      .     ..++|.||||||+...+..++++++|||||+||||+++++++
T Consensus       410 --------------------------------i-----~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~  452 (702)
T PLN02292        410 --------------------------------I-----DRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRD  452 (702)
T ss_pred             --------------------------------c-----ccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHH
Confidence                                            0     124799999999876555678999999999999999999999


Q ss_pred             HHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC-CccCCCCceEEEEEEcCCCCCCCCccccccccccc--cc
Q 006160          395 ILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC-PFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSS--IY  471 (658)
Q Consensus       395 ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~-~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~--~~  471 (658)
                      ++++..++ .+..++|+|+|++|+.+|+.+++++.+|+.. ....++.++++++|+|+++++..+.....++++.+  ++
T Consensus       453 L~~~~~~~-~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~  531 (702)
T PLN02292        453 LIYTSSTE-TCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTGNMNIIKTLWFK  531 (702)
T ss_pred             HHhccccc-cCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCcccccchhhhhhhcCC
Confidence            98764221 1234789999999999999998888776521 11234578999999999987654333334445544  45


Q ss_pred             CCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCC----CcchhhHHHHHHHHHhhheeeccceeeee
Q 006160          472 PVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN----IHSWWYKGLLFLACMVGGVLIFGGTVIGF  547 (658)
Q Consensus       472 P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~----~~~~~~~~~l~~~~~~~~v~i~g~~~~~~  547 (658)
                      |.++|++++.+|||++|+|++++|+|||+||++++|+++||||||+|    .|+||+++++++++||+||++ ||+++.+
T Consensus       532 p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~  610 (702)
T PLN02292        532 PNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYTLAYKSLIYLLVISISVVA-TSTAAML  610 (702)
T ss_pred             CCCCCCceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhheeEeccccCCCCCCccHHHHHHHHHHHHHHhhh-hhhHHHh
Confidence            66669999999999999999999999999999999999999999999    667999999999999999998 7777887


Q ss_pred             ehhhhhhcccc-ccCCCCccccccccccccccccccccccCcccceeecCCCCCHHHHHHhhhccCCCceEEEEEeCChh
Q 006160          548 WHLWERKSSAR-ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS  626 (658)
Q Consensus       548 w~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~  626 (658)
                      ||.   |++.+ +++|.|.++       .++++++.+.+++.+.+++|||+|||+++|+.+..    +++|||++|||++
T Consensus       611 w~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~----~~~vgvlv~gp~~  676 (702)
T PLN02292        611 WNK---KKYYKKSSQQVDNVD-------SPREIESSPQQLLVQRTNIHYGERPNLNKLLVGLK----GSSVGVLVCGPKK  676 (702)
T ss_pred             hcc---cccccchhccccccc-------cccccccCcccccccceeeeccCCCCHHHHHHhcC----CCceeEEEECcHH
Confidence            865   44433 555555543       34777888888898899999999999999996553    4699999999999


Q ss_pred             hHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160          627 LQSSVAKEIRSHSLMRECHDPIFHFHSHSFD  657 (658)
Q Consensus       627 m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~  657 (658)
                      |+++||++|++.+    ++|  |||||.|||
T Consensus       677 ~~~~va~~c~s~~----~~~--~~~~s~sf~  701 (702)
T PLN02292        677 MRQKVAKICSSGL----AEN--LHFESISFS  701 (702)
T ss_pred             HHHHHHHHHhcCC----Ccc--eeEEeeccc
Confidence            9999999999955    444  999999998

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=100.00  E-value=1.4e-85  Score=753.86  Aligned_cols=497  Identities=32%  Similarity=0.598  Sum_probs=406.1

Q ss_pred             ccccc--chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcch
Q 006160            4 DTMYG--WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQ   74 (658)
Q Consensus         4 ~~~~~--~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE   74 (658)
                      |..|.  ..+|||+|       +.|+++|++.|...+.+.+++..|..++..+++|++|++++++|+++|++++||++||
T Consensus       185 Gis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~YE  264 (722)
T PLN02844        185 GIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFE  264 (722)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhhhhH
Confidence            44455  46999999       3578888888988877745677887766678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcE
Q 006160           75 LFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSF  154 (658)
Q Consensus        75 ~F~~~H~l~ilflv~l~~H~~~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~  154 (658)
                      +|+++|+++++|++++++|+...+.+|+++++++|++||++|.++++....+++++.+++++++++++++..++|+||||
T Consensus       265 lF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQf  344 (722)
T PLN02844        265 IFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSV  344 (722)
T ss_pred             HHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEeeeEEEEEEEEecCCEEEEEEECCCCCCcCCCee
Confidence            99999999998999999999876667899999999999999999887666677888899999999999988899999999


Q ss_pred             EEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 006160          155 FFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPV  234 (658)
Q Consensus       155 v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (658)
                      ++|++|..+++|||||||+|+|..+++.++++||+.|+||++|++.+....+.+.                         
T Consensus       345 V~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~-------------------------  399 (722)
T PLN02844        345 IFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSET-------------------------  399 (722)
T ss_pred             EEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCC-------------------------
Confidence            9999999999999999999987544578999999999999999998754321100                         


Q ss_pred             ccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhh
Q 006160          235 RNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVV  314 (658)
Q Consensus       235 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (658)
                                                                                                      
T Consensus       400 --------------------------------------------------------------------------------  399 (722)
T PLN02844        400 --------------------------------------------------------------------------------  399 (722)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHH
Q 006160          315 AGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSD  394 (658)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~  394 (658)
                                                    ...     .+.++.||||||....+..++++++|||||+||||++|++++
T Consensus       400 ------------------------------~~~-----~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrd  444 (722)
T PLN02844        400 ------------------------------NQM-----NCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKE  444 (722)
T ss_pred             ------------------------------Ccc-----cceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHH
Confidence                                          000     235799999999876555678999999999999999999999


Q ss_pred             HHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCC------Ccccccccccc
Q 006160          395 ILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPL------EEGELHKTMSS  468 (658)
Q Consensus       395 ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~------~~~~~~~~~v~  468 (658)
                      +.++.+.. ....++|+|+|++|+.+|+.|++++..++... ..+..++++++||||++.+..      +++...++  .
T Consensus       445 l~~~~~~~-~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~-~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~--~  520 (722)
T PLN02844        445 IASQSSSR-YRFPKRVQLIYVVKKSQDICLLNPISSLLLNQ-SSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQT--V  520 (722)
T ss_pred             HHhccccc-cCCCCcEEEEEEECCHHHhhhHHHHHHHhHHh-HHHhcCceEEEEECCCCCCCCchhhHhhccchhhh--c
Confidence            98754211 12346899999999999999999887554322 123357999999999876422      11122222  3


Q ss_pred             cccCCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCCCcc--------------------hhhHHHH
Q 006160          469 SIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHS--------------------WWYKGLL  528 (658)
Q Consensus       469 ~~~P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~~~~--------------------~~~~~~l  528 (658)
                      .+.|   +...+++|||++|+|++++|++||++||+++|+++|||| |+|..+                    ||+++++
T Consensus       521 ~~~~---~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  596 (722)
T PLN02844        521 NFST---KCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFI-PSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLL  596 (722)
T ss_pred             CCCC---CCCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEe-ccccccccchhcccccccccccCCCchHHHHHH
Confidence            3444   345599999999999999999999999999999999999 666333                    9999999


Q ss_pred             HHHHHhhheeeccceeeeeehhhhhhcccccc-CCCCccccccccccccccccccccccCcccceeecCCCCCHHHHHHh
Q 006160          529 FLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGS  607 (658)
Q Consensus       529 ~~~~~~~~v~i~g~~~~~~w~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~  607 (658)
                      ++++|++||++ ||+|+.+|+ |+|++++.++ ++++.++..    ++.++    ...++.+.+++|||+|||+++|+++
T Consensus       597 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~g~rp~~~~i~~~  666 (722)
T PLN02844        597 LIVSFIIAITC-STFVAIILR-WRRLKKEIPRVSQKQGIKPE----EGSME----KRGPVLEEHEIHFGGRPNFQDIFSK  666 (722)
T ss_pred             HHHHHHHHhee-cceEeEeee-ccccccCCccccccccCCCC----Ccccc----ccccccccceeecCCCCCHHHHHHH
Confidence            99999999988 999999999 8888877654 344444321    11122    2234556689999999999999999


Q ss_pred             hhccCCCceEEEEEeCChhhHHHHHHHHHhccc-----CCCCCCceEEEEecccCC
Q 006160          608 TSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSL-----MRECHDPIFHFHSHSFDL  658 (658)
Q Consensus       608 ~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~~~~-----~~~~~~~~~~fhsesF~l  658 (658)
                      ..++.++++|||++|||++|+++||++||++|+     .+.+.++.|||||.||||
T Consensus       667 ~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f~l  722 (722)
T PLN02844        667 FPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFTL  722 (722)
T ss_pred             hhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeecccCC
Confidence            999888999999999999999999999999998     555667889999999997

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3e-61  Score=552.86  Aligned_cols=394  Identities=31%  Similarity=0.561  Sum_probs=316.5

Q ss_pred             chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcchHHHHHHH
Q 006160            9 WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQ   81 (658)
Q Consensus         9 ~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE~F~~~H~   81 (658)
                      -.+|+|.+       ..|++.|++.|++.+....+...|...+..+++|+++++++++|+++|++++||+.||+||++|+
T Consensus       231 ~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~  310 (646)
T KOG0039|consen  231 ILLHIWLHLVNFFPFLVHGLEYTISLASELFFLPKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHH  310 (646)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            35899998       35688999999998755445567777788899999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhcc-----hhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEE
Q 006160           82 LYVVFVVFLALHVG-----DFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFF  156 (658)
Q Consensus        82 l~ilflv~l~~H~~-----~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~  156 (658)
                      +++++++++++|+.     ..| .|++.++++|++||++|+.|++.+++++++..+|+++++|++++|+.++|+||||+|
T Consensus       311 l~~v~~illi~hg~~~~~~~~w-~~~~~p~~ly~~dR~~r~~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyif  389 (646)
T KOG0039|consen  311 LYIVFYILLIIHGGFRLLGTTW-MYIAVPVLLYILDRILRFLRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIF  389 (646)
T ss_pred             HHHHHHHHHHHHhcccccccch-hHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEE
Confidence            99999999999987     444 455555889999999999998778999999999999999999999999999999999


Q ss_pred             EEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 006160          157 LQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRN  236 (658)
Q Consensus       157 L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (658)
                      |++|.++.+|||||||+|+|+  +++++++||++||||++|++.+.+...+.           +                
T Consensus       390 v~~p~ls~~qwHPFTItSsp~--dd~lsvhIk~~g~wT~~L~~~~~~~~~~~-----------~----------------  440 (646)
T KOG0039|consen  390 VNCPSLSKLEWHPFTITSAPE--DDFLSVHIKALGDWTEKLRNAFSEVSQPP-----------E----------------  440 (646)
T ss_pred             EECccccccccCCceeecCCC--CCEEEEEEEecCcHHHHHHHHHhhhcccc-----------c----------------
Confidence            999999999999999999994  38999999999999999999987422100           0                


Q ss_pred             chhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcC
Q 006160          237 LMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG  316 (658)
Q Consensus       237 ~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (658)
                                                                                                      
T Consensus       441 --------------------------------------------------------------------------------  440 (646)
T KOG0039|consen  441 --------------------------------------------------------------------------------  440 (646)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHH
Q 006160          317 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDIL  396 (658)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll  396 (658)
                                          ..      ...     ...++.||||||...+++.+|++++|||||+|+||++|++++++
T Consensus       441 --------------------~~------~~~-----~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~  489 (646)
T KOG0039|consen  441 --------------------SD------KSY-----PFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLL  489 (646)
T ss_pred             --------------------cc------ccc-----cCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHH
Confidence                                00      000     12479999999999988899999999999999999999999999


Q ss_pred             HhhccCC----------CCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccccc
Q 006160          397 HRINEGK----------SCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTM  466 (658)
Q Consensus       397 ~~~~~~~----------~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~  466 (658)
                      .+.+.++          ....++++|+|.+|+..+++|+.+++.+...  .....-++++.|+|+..+.    .+..+++
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~--~~~~~~~e~~~~~t~~~~~----~d~~~~~  563 (646)
T KOG0039|consen  490 NKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEE--YDSSGVIELHNYVTSSYEE----GDARSAL  563 (646)
T ss_pred             hhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHH--HHhcCCchhheehhHhHhh----hhhhhHH
Confidence            9876543          2467899999999999999999999877542  1223348899999976531    1111110


Q ss_pred             cccccCCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCCCcchhhHHHHHHHHHhhheeeccceeee
Q 006160          467 SSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIG  546 (658)
Q Consensus       467 v~~~~P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~~~~~~~~~~l~~~~~~~~v~i~g~~~~~  546 (658)
                                                                                      +-|+..          
T Consensus       564 ----------------------------------------------------------------~~~~~~----------  569 (646)
T KOG0039|consen  564 ----------------------------------------------------------------IQMVQK----------  569 (646)
T ss_pred             ----------------------------------------------------------------HHHHHh----------
Confidence                                                                            011000          


Q ss_pred             eehhhhhhccccccCCCCccccccccccccccccccccccCcccceeecCCCCCHHHHHHhhhccCCCceEEEEEeCChh
Q 006160          547 FWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS  626 (658)
Q Consensus       547 ~w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~  626 (658)
                                ..+++..+++                 .+++.  ..+|+ |||||++++++.++.+++.+||||+|||++
T Consensus       570 ----------~~~~~~~~di-----------------~~g~~--~~~~~-gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~  619 (646)
T KOG0039|consen  570 ----------LLHAKNGVDI-----------------VTGLK--VETHF-GRPNWKEVFKEIAKSHPNVRVGVFSCGPPG  619 (646)
T ss_pred             ----------hcccccCccc-----------------cccce--eeeeC-CCCCHHHHHHHHHhhCCCceEEEEEeCCHH
Confidence                      0011111111                 13333  45666 899999999999999988889999999999


Q ss_pred             hHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160          627 LQSSVAKEIRSHSLMRECHDPIFHFHSHSF  656 (658)
Q Consensus       627 m~~~V~~~~~~~~~~~~~~~~~~~fhsesF  656 (658)
                      |+++|++.|++++..   +.+.|+||+|||
T Consensus       620 l~~~~~~~~~~~~~~---~~~~~~f~~E~F  646 (646)
T KOG0039|consen  620 LVKELRKLCNDFSSS---TATRFEFHKENF  646 (646)
T ss_pred             HHHHHHHHHHhcccc---cCceeeeeeccC
Confidence            999999999998865   346699999998

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.96  E-value=1.3e-28  Score=245.84  Aligned_cols=158  Identities=30%  Similarity=0.542  Sum_probs=126.9

Q ss_pred             EEEEEec-CceEEEEEeCCCCCCcCCCcEEEEEeCCC-CCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhc
Q 006160          127 LSASCLP-CGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK  204 (658)
Q Consensus       127 ~sv~~l~-~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i-s~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~  204 (658)
                      ++++.++ +++++|+++.+..+.|+||||++|++|.. +.+++|||||+|.+.++.+.++|+||..+++|+++.+.+...
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~   81 (210)
T cd06186           2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS   81 (210)
T ss_pred             eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence            4567788 99999999988889999999999999987 789999999999986434899999999955666666665432


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  284 (658)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (658)
                      ...                                                                             
T Consensus        82 ~~~-----------------------------------------------------------------------------   84 (210)
T cd06186          82 PGG-----------------------------------------------------------------------------   84 (210)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160          285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  364 (658)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG  364 (658)
                                                                                         +...++.|+||||
T Consensus        85 -------------------------------------------------------------------~~~~~v~v~GP~G   97 (210)
T cd06186          85 -------------------------------------------------------------------GVSLKVLVEGPYG   97 (210)
T ss_pred             -------------------------------------------------------------------CceeEEEEECCCC
Confidence                                                                               0224688999999


Q ss_pred             CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHH
Q 006160          365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK  430 (658)
Q Consensus       365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~  430 (658)
                      ........++++||||||+||||+++++++++++.++  ....++|+|+|++|+.+++.|+.+.+.
T Consensus        98 ~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~~~~~l~  161 (210)
T cd06186          98 SSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEWFLDELR  161 (210)
T ss_pred             CCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHHHHHHHH
Confidence            9763446789999999999999999999999876531  112468999999999999888877664

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.4e-27  Score=249.37  Aligned_cols=248  Identities=22%  Similarity=0.271  Sum_probs=174.7

Q ss_pred             hhhcchHHHHHHHHHHHHhhhhhhhcchh---------HHHH-----HHHHHHHHHHHHHhhhccc-cceEEEEEEEEec
Q 006160           69 RKHFFQLFFYTHQLYVVFVVFLALHVGDF---------VFSM-----AAGGIFLFILDRFLRFCQS-RRTVDVLSASCLP  133 (658)
Q Consensus        69 Rr~~YE~F~~~H~l~ilflv~l~~H~~~~---------~~~~-----~~~~i~l~~~Dr~~R~~r~-~~~~~v~sv~~l~  133 (658)
                      -+--||.|.++|.++++.+++..+|.-..         ...|     .+.+..++......+..++ +....++..+..+
T Consensus       148 ~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~  227 (438)
T COG4097         148 LNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGN  227 (438)
T ss_pred             HhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcC
Confidence            35589999999999999999999997421         0112     2222222222222333333 3456777788888


Q ss_pred             CceEEEEEeCCCCCCcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCC
Q 006160          134 CGTVELVLSKPANLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG  212 (658)
Q Consensus       134 ~~v~~l~i~~p~~~~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~  212 (658)
                      .+++++++...+.+.++||||.||.++. .++.-.||||||++.+.  .++.|.||+.||+|+.|++.++..        
T Consensus       228 ~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~LGD~Tk~l~dnLk~G--------  297 (438)
T COG4097         228 VDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKALGDFTKTLKDNLKVG--------  297 (438)
T ss_pred             cchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehhhhhhhHHHHHhccCC--------
Confidence            8899999988877889999999999984 34567899999999764  589999999999999997754211        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP  292 (658)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (658)
                                                                                                      
T Consensus       298 --------------------------------------------------------------------------------  297 (438)
T COG4097         298 --------------------------------------------------------------------------------  297 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccc
Q 006160          293 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM  372 (658)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~  372 (658)
                                                                                  +  ++.||||||.+..+ ..
T Consensus       298 ------------------------------------------------------------~--k~~vdGPYG~F~~~-~g  314 (438)
T COG4097         298 ------------------------------------------------------------T--KLEVDGPYGKFDFE-RG  314 (438)
T ss_pred             ------------------------------------------------------------c--eEEEecCcceeecc-cC
Confidence                                                                        2  58899999986433 23


Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCC
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  452 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~  452 (658)
                      -.+-|.||||||||||+|.++++..+.      ..+.|+|++++|+.++..+.+++. ++.    .+..++++|+. ++.
T Consensus       315 ~~~QVWIAGGIGITPFis~l~~l~~~~------s~~~V~L~Y~~~n~e~~~y~~eLr-~~~----qkl~~~~lHii-DSs  382 (438)
T COG4097         315 LNTQVWIAGGIGITPFISMLFTLAERK------SDPPVHLFYCSRNWEEALYAEELR-ALA----QKLPNVVLHII-DSS  382 (438)
T ss_pred             CcccEEEecCcCcchHHHHHHhhcccc------cCCceEEEEEecCCchhHHHHHHH-HHH----hcCCCeEEEEe-cCC
Confidence            345999999999999999999997633      246799999999999998776653 321    24567888772 222


Q ss_pred             CCCCCCcccccccccccccCCCCCCceeEeecCCC
Q 006160          453 TEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGN  487 (658)
Q Consensus       453 ~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~  487 (658)
                      .     ++.+.++.+++. |...-......|||..
T Consensus       383 ~-----~g~l~~e~ler~-~~~~~~~sv~fCGP~~  411 (438)
T COG4097         383 K-----DGYLDQEDLERY-PDRPRTRSVFFCGPIK  411 (438)
T ss_pred             C-----CCccCHHHhhcc-ccccCcceEEEEcCHH
Confidence            2     233333444444 3322233678999983

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.91  E-value=1.3e-22  Score=205.94  Aligned_cols=166  Identities=19%  Similarity=0.291  Sum_probs=127.4

Q ss_pred             eEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      .++|.+++.+.+++++++++.+.  .+.|+||||+.|+++...  ++|||||+|.|.+ .+.++|+||..  |.+|+.|.
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~l~l~vk~~~~G~~s~~l~   78 (232)
T cd06212           2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPAD-PGRLEFIIKKYPGGLFSSFLD   78 (232)
T ss_pred             ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCC-CCEEEEEEEECCCCchhhHHh
Confidence            46788899999999999887543  578999999999998533  7899999999864 47899999997  77887775


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  278 (658)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (658)
                      +.+..                                                                           
T Consensus        79 ~~l~~---------------------------------------------------------------------------   83 (232)
T cd06212          79 DGLAV---------------------------------------------------------------------------   83 (232)
T ss_pred             hcCCC---------------------------------------------------------------------------
Confidence            43210                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160          279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  358 (658)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  358 (658)
                                                                                               +.  ++.
T Consensus        84 -------------------------------------------------------------------------G~--~v~   88 (232)
T cd06212          84 -------------------------------------------------------------------------GD--PVT   88 (232)
T ss_pred             -------------------------------------------------------------------------CC--EEE
Confidence                                                                                     12  477


Q ss_pred             EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160          359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  438 (658)
Q Consensus       359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~  438 (658)
                      ++||||........+++++|||||+||||++++++++.++..      .++|+|+|++|+.+++.+.+++ +++.    .
T Consensus        89 i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~----~  157 (232)
T cd06212          89 VTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS------DRPVRFFYGARTARDLFYLEEI-AALG----E  157 (232)
T ss_pred             EEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC------CCcEEEEEeccchHHhccHHHH-HHHH----H
Confidence            999999876543457899999999999999999999987531      3579999999999998765544 3332    1


Q ss_pred             CCCceEEEEEEcCC
Q 006160          439 DKLNLETFIYVTRE  452 (658)
Q Consensus       439 ~~~~l~I~iyVT~~  452 (658)
                      ...+++++.+++++
T Consensus       158 ~~~~~~~~~~~s~~  171 (232)
T cd06212         158 KIPDFTFIPALSES  171 (232)
T ss_pred             hCCCEEEEEEECCC
Confidence            23467776677654

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=99.90  E-value=2.7e-22  Score=205.54  Aligned_cols=172  Identities=18%  Similarity=0.222  Sum_probs=132.5

Q ss_pred             cccceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEc--C
Q 006160          119 QSRRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--G  191 (658)
Q Consensus       119 r~~~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~--G  191 (658)
                      |.++..++.+++.+++++.++++..+..   +.|+||||+.|.++..+  ...+|||||+|.+.+  +.++|.||..  |
T Consensus         4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~~G   81 (247)
T cd06184           4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREPGG   81 (247)
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcCCC
Confidence            3445678899999999999999987653   68999999999997433  568899999999864  5999999998  8


Q ss_pred             chHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCC
Q 006160          192 EWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP  271 (658)
Q Consensus       192 ~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~  271 (658)
                      .+|+.|.+.+.                                                                     
T Consensus        82 ~~s~~l~~~~~---------------------------------------------------------------------   92 (247)
T cd06184          82 LVSNYLHDNVK---------------------------------------------------------------------   92 (247)
T ss_pred             cchHHHHhcCC---------------------------------------------------------------------
Confidence            88888754221                                                                     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLP  351 (658)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (658)
                                                                                                     +
T Consensus        93 -------------------------------------------------------------------------------~   93 (247)
T cd06184          93 -------------------------------------------------------------------------------V   93 (247)
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           0


Q ss_pred             CCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHh
Q 006160          352 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  431 (658)
Q Consensus       352 ~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~e  431 (658)
                      ++  ++.|+||||........+++++|||||+||||+++++++++++.      ..++++|+|++|+.+++.+.++ +.+
T Consensus        94 Gd--~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~------~~~~i~l~~~~r~~~~~~~~~~-l~~  164 (247)
T cd06184          94 GD--VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG------PGRPVTFIHAARNSAVHAFRDE-LEE  164 (247)
T ss_pred             CC--EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC------CCCcEEEEEEcCchhhHHHHHH-HHH
Confidence            12  47799999986443236789999999999999999999998753      1357999999999999865444 333


Q ss_pred             ccCCccCCCCceEEEEEEcCCC
Q 006160          432 SICPFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       432 ll~~~~~~~~~l~I~iyVT~~~  453 (658)
                      +.    ....++++++++++..
T Consensus       165 l~----~~~~~~~~~~~~s~~~  182 (247)
T cd06184         165 LA----ARLPNLKLHVFYSEPE  182 (247)
T ss_pred             HH----hhCCCeEEEEEECCCC
Confidence            32    2335788888888653

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.90  E-value=2.6e-22  Score=203.24  Aligned_cols=166  Identities=19%  Similarity=0.246  Sum_probs=128.1

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      +.+|.+++.+++++++++++.+..+.|+||||++|+++...  .+|||||+|++.+ .+.++|+||..  |.+|+.|++.
T Consensus         2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~   78 (227)
T cd06213           2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQG-DGQLSFHIRKVPGGAFSGWLFGA   78 (227)
T ss_pred             eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCC-CCEEEEEEEECCCCcchHHHHhc
Confidence            35788889999999999999877789999999999997543  6799999999864 47899999987  8899988654


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      ++.                                                                             
T Consensus        79 l~~-----------------------------------------------------------------------------   81 (227)
T cd06213          79 DRT-----------------------------------------------------------------------------   81 (227)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            311                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                             ++  ++.|+
T Consensus        82 -----------------------------------------------------------------------G~--~v~i~   88 (227)
T cd06213          82 -----------------------------------------------------------------------GE--RLTVR   88 (227)
T ss_pred             -----------------------------------------------------------------------CC--EEEEe
Confidence                                                                                   02  47799


Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      ||||..... ...++++|||||+||||+++++++++++..      .++|+++|++|+.+++.+.+++. ++..   ...
T Consensus        89 gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~~~~~l~-~l~~---~~~  157 (227)
T cd06213          89 GPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGT------KRDVTLLFGARTQRDLYALDEIA-AIAA---RWR  157 (227)
T ss_pred             CCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCC------CCcEEEEEeeCCHHHhccHHHHH-HHHH---hcc
Confidence            999987543 345799999999999999999999986531      35799999999999986554443 3221   112


Q ss_pred             CceEEEEEEcCC
Q 006160          441 LNLETFIYVTRE  452 (658)
Q Consensus       441 ~~l~I~iyVT~~  452 (658)
                      .+++++.+++++
T Consensus       158 ~~~~~~~~~s~~  169 (227)
T cd06213         158 GRFRFIPVLSEE  169 (227)
T ss_pred             CCeEEEEEecCC
Confidence            457777777664

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=99.90  E-value=2.6e-22  Score=205.08  Aligned_cols=165  Identities=23%  Similarity=0.272  Sum_probs=128.5

Q ss_pred             EEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCC-CCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHh
Q 006160          126 VLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL  202 (658)
Q Consensus       126 v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i-s~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~  202 (658)
                      |++++.+++++++++++.+..+.|+||||+.|+++.. +...+|||||+|.+.+  +.++|+||+.  |.+|+.|.++ .
T Consensus         2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~~G~~s~~l~~l-~   78 (241)
T cd06195           2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVPDGPLTPRLFKL-K   78 (241)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEecCCCCchHHhcC-C
Confidence            5677888899999999987778899999999999875 6778899999999864  7999999976  8888877421 0


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                      .                                                                               
T Consensus        79 ~-------------------------------------------------------------------------------   79 (241)
T cd06195          79 P-------------------------------------------------------------------------------   79 (241)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE-C
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE-G  361 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve-G  361 (658)
                                                                                           ++  ++.+. |
T Consensus        80 ---------------------------------------------------------------------Gd--~v~v~~g   88 (241)
T cd06195          80 ---------------------------------------------------------------------GD--TIYVGKK   88 (241)
T ss_pred             ---------------------------------------------------------------------CC--EEEECcC
Confidence                                                                                 12  47788 9


Q ss_pred             ccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCC-
Q 006160          362 PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSD-  439 (658)
Q Consensus       362 PyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~-  439 (658)
                      |+|.+..... ..++++|||||+||||+++++++++...      ..++|+|+|++|+.+++.+.+++ .++.    .+ 
T Consensus        89 P~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~d~~~~~el-~~l~----~~~  157 (241)
T cd06195          89 PTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE------RFDKIVLVHGVRYAEELAYQDEI-EALA----KQY  157 (241)
T ss_pred             CCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC------CCCcEEEEEccCCHHHhhhHHHH-HHHH----hhc
Confidence            9998643323 4689999999999999999999997543      13589999999999999655443 3432    12 


Q ss_pred             CCceEEEEEEcCCCC
Q 006160          440 KLNLETFIYVTRETE  454 (658)
Q Consensus       440 ~~~l~I~iyVT~~~~  454 (658)
                      ..+++++.++|++++
T Consensus       158 ~~~~~~~~~~s~~~~  172 (241)
T cd06195         158 NGKFRYVPIVSREKE  172 (241)
T ss_pred             CCCEEEEEEECcCCc
Confidence            357888888887654

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=99.90  E-value=3.3e-22  Score=202.52  Aligned_cols=165  Identities=23%  Similarity=0.295  Sum_probs=129.4

Q ss_pred             eEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      .++|++++.+++++++++++.+.  .+.|+||||+.|+++..  .++|||||+|.+.+  +.++|+||..  |.+|+.|.
T Consensus         3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~--~~i~~~i~~~~~G~~s~~l~   78 (228)
T cd06209           3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGD--PRLEFLIRLLPGGAMSSYLR   78 (228)
T ss_pred             eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCC--CeEEEEEEEcCCCcchhhHH
Confidence            46788999999999999999876  58999999999999853  35799999998864  7899999986  77888775


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  278 (658)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (658)
                      +.++.                                                                           
T Consensus        79 ~~l~~---------------------------------------------------------------------------   83 (228)
T cd06209          79 DRAQP---------------------------------------------------------------------------   83 (228)
T ss_pred             hccCC---------------------------------------------------------------------------
Confidence            53210                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160          279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  358 (658)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  358 (658)
                                                                                               ++  ++.
T Consensus        84 -------------------------------------------------------------------------G~--~v~   88 (228)
T cd06209          84 -------------------------------------------------------------------------GD--RLT   88 (228)
T ss_pred             -------------------------------------------------------------------------CC--EEE
Confidence                                                                                     12  467


Q ss_pred             EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160          359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  438 (658)
Q Consensus       359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~  438 (658)
                      |+||||..... ...++++|||||+||||+++++++++.+.      ..++++|+|++|+.+++.+.+++. ++.    .
T Consensus        89 v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~-~l~----~  156 (228)
T cd06209          89 LTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRDADLVELDRLE-ALA----E  156 (228)
T ss_pred             EECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCHHHhccHHHHH-HHH----H
Confidence            99999987543 34478999999999999999999998654      135799999999999987655443 332    2


Q ss_pred             CCCceEEEEEEcCCC
Q 006160          439 DKLNLETFIYVTRET  453 (658)
Q Consensus       439 ~~~~l~I~iyVT~~~  453 (658)
                      ...+++++.++|+++
T Consensus       157 ~~~~~~~~~~~s~~~  171 (228)
T cd06209         157 RLPGFSFRTVVADPD  171 (228)
T ss_pred             hCCCeEEEEEEcCCC
Confidence            345688888888754

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=99.90  E-value=2.8e-22  Score=201.44  Aligned_cols=137  Identities=33%  Similarity=0.507  Sum_probs=109.6

Q ss_pred             CceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCC
Q 006160          134 CGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG  212 (658)
Q Consensus       134 ~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~  212 (658)
                      .++++++++.+.. +.|+||||++|+++..+.+++|||||+|.+.+ ++.++|+||..|++|+.|.+.+..         
T Consensus         7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~G~~t~~l~~~l~~---------   76 (216)
T cd06198           7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKALGDYTRRLAERLKP---------   76 (216)
T ss_pred             cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeCChHHHHHHHhCCC---------
Confidence            4567777765544 78999999999998766788999999999864 379999999999999988744311         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP  292 (658)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (658)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (216)
T cd06198          77 --------------------------------------------------------------------------------   76 (216)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccc
Q 006160          293 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM  372 (658)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~  372 (658)
                                                                                 +.  ++.|+||||..... ..
T Consensus        77 -----------------------------------------------------------G~--~v~i~gP~G~~~~~-~~   94 (216)
T cd06198          77 -----------------------------------------------------------GT--RVTVEGPYGRFTFD-DR   94 (216)
T ss_pred             -----------------------------------------------------------CC--EEEEECCCCCCccc-cc
Confidence                                                                       01  47799999986443 23


Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      +++++|||||+||||+++++++++++..      .++++|+|++|+.+++.+.+++
T Consensus        95 ~~~~vlia~GtGiap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l  144 (216)
T cd06198          95 RARQIWIAGGIGITPFLALLEALAARGD------ARPVTLFYCVRDPEDAVFLDEL  144 (216)
T ss_pred             CceEEEEccccCHHHHHHHHHHHHhcCC------CceEEEEEEECCHHHhhhHHHH
Confidence            7899999999999999999999986541      3689999999999988665544

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=99.89  E-value=7.4e-22  Score=200.33  Aligned_cols=166  Identities=22%  Similarity=0.292  Sum_probs=128.7

Q ss_pred             EEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          125 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       125 ~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      +|++++.+++++.+++++.+..  +.|+||||++|.++..+...+|||||+|.+.  .++++|.||..  |.+|+.|++.
T Consensus         2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~   79 (231)
T cd06191           2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH   79 (231)
T ss_pred             EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence            5778888999999999987654  6899999999999755566789999999986  37899999998  7788887543


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      ++.                                                                             
T Consensus        80 ~~~-----------------------------------------------------------------------------   82 (231)
T cd06191          80 IQP-----------------------------------------------------------------------------   82 (231)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                             ++  ++.|+
T Consensus        83 -----------------------------------------------------------------------Gd--~v~i~   89 (231)
T cd06191          83 -----------------------------------------------------------------------GM--TVEVM   89 (231)
T ss_pred             -----------------------------------------------------------------------CC--EEEEe
Confidence                                                                                   12  47799


Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      ||||.........++++|||||+||||+++++++++....      .++++|+|++|+.+++.+.+++ .++.    .+.
T Consensus        90 gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~------~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~  158 (231)
T cd06191          90 GPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP------ESDFTLIHSARTPADMIFAQEL-RELA----DKP  158 (231)
T ss_pred             CCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHHHHH-HHHH----HhC
Confidence            9999864332356799999999999999999999976431      3579999999999998665544 3332    234


Q ss_pred             CceEEEEEEcCCC
Q 006160          441 LNLETFIYVTRET  453 (658)
Q Consensus       441 ~~l~I~iyVT~~~  453 (658)
                      .+++++.++|+++
T Consensus       159 ~~~~~~~~~s~~~  171 (231)
T cd06191         159 QRLRLLCIFTRET  171 (231)
T ss_pred             CCeEEEEEECCCC
Confidence            5788888888764

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.89  E-value=7e-22  Score=212.23  Aligned_cols=166  Identities=19%  Similarity=0.314  Sum_probs=128.7

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  197 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L  197 (658)
                      ...+|++++.+++++++++++.+.  .+.|+||||+.|.++..   ++|||||+|.+.+ .+.++|+||..  |.+|+.|
T Consensus       103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~l  178 (339)
T PRK07609        103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHS-GGPLELHIRHMPGGVFTDHV  178 (339)
T ss_pred             EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCC-CCEEEEEEEecCCCccHHHH
Confidence            357888899999999999998763  47999999999999752   5799999999864 47999999986  7888888


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          198 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE  277 (658)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (658)
                      ++.++.                                                                          
T Consensus       179 ~~~l~~--------------------------------------------------------------------------  184 (339)
T PRK07609        179 FGALKE--------------------------------------------------------------------------  184 (339)
T ss_pred             HHhccC--------------------------------------------------------------------------
Confidence            664311                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE
Q 006160          278 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA  357 (658)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  357 (658)
                                                                                                +.  ++
T Consensus       185 --------------------------------------------------------------------------G~--~v  188 (339)
T PRK07609        185 --------------------------------------------------------------------------RD--IL  188 (339)
T ss_pred             --------------------------------------------------------------------------CC--EE
Confidence                                                                                      12  47


Q ss_pred             EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160          358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  437 (658)
Q Consensus       358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~  437 (658)
                      .++||||.+.......+++||||||+||||++++++++++..      ..++|+|+|++|+.+++. +++.+.++.    
T Consensus       189 ~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------~~~~i~l~~g~r~~~dl~-~~e~l~~~~----  257 (339)
T PRK07609        189 RIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------IQRPVTLYWGARRPEDLY-LSALAEQWA----  257 (339)
T ss_pred             EEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEecCChHHhc-cHHHHHHHH----
Confidence            799999997654346689999999999999999999998643      135799999999999984 344443332    


Q ss_pred             CCCCceEEEEEEcCC
Q 006160          438 SDKLNLETFIYVTRE  452 (658)
Q Consensus       438 ~~~~~l~I~iyVT~~  452 (658)
                      .+..+++++..++++
T Consensus       258 ~~~~~~~~~~~~s~~  272 (339)
T PRK07609        258 EELPNFRYVPVVSDA  272 (339)
T ss_pred             HhCCCeEEEEEecCC
Confidence            234468887778775

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.89  E-value=7.9e-22  Score=201.80  Aligned_cols=212  Identities=20%  Similarity=0.265  Sum_probs=154.3

Q ss_pred             HHHHhhhccc-----cceEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEE
Q 006160          111 LDRFLRFCQS-----RRTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSS  184 (658)
Q Consensus       111 ~Dr~~R~~r~-----~~~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~ls  184 (658)
                      +||++|+++.     ...+++++++.+++++++++++.+.. ..|+||||++|.++..+...+|||||+|.+..+.+.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~   81 (243)
T cd06216           2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT   81 (243)
T ss_pred             chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence            5888888654     13577888999999999999997654 58999999999998666677899999999851237899


Q ss_pred             EEEEEc--CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCC
Q 006160          185 VLIKVL--GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV  262 (658)
Q Consensus       185 l~IR~~--G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~  262 (658)
                      |+||..  |.+|+.|.+.++.                                                           
T Consensus        82 ~~ik~~~~G~~s~~l~~~~~~-----------------------------------------------------------  102 (243)
T cd06216          82 LTVKAQPDGLVSNWLVNHLAP-----------------------------------------------------------  102 (243)
T ss_pred             EEEEEcCCCcchhHHHhcCCC-----------------------------------------------------------
Confidence            999998  8899888553210                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 006160          263 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRP  342 (658)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (658)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (243)
T cd06216         103 --------------------------------------------------------------------------------  102 (243)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcch
Q 006160          343 PPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL  422 (658)
Q Consensus       343 ~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl  422 (658)
                               ++  ++.|+||||........+++++|||||+||||++++++++.+..      ..+++.++|++|+.+++
T Consensus       103 ---------Gd--~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------~~~~i~l~~~~r~~~~~  165 (243)
T cd06216         103 ---------GD--VVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------PTADVVLLYYARTREDV  165 (243)
T ss_pred             ---------CC--EEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEEcCChhhh
Confidence                     12  47799999985433234789999999999999999999997653      13579999999999988


Q ss_pred             hhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          423 SLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       423 ~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      .+.+++ +++.    .+..+++++.++|++ .   ..+.+....+....+.. +...+.+|||++.
T Consensus       166 ~~~~el-~~l~----~~~~~~~~~~~~s~~-~---~~g~~~~~~l~~~~~~~-~~~~vyvcGp~~m  221 (243)
T cd06216         166 IFADEL-RALA----AQHPNLRLHLLYTRE-E---LDGRLSAAHLDAVVPDL-ADRQVYACGPPGF  221 (243)
T ss_pred             HHHHHH-HHHH----HhCCCeEEEEEEcCC-c---cCCCCCHHHHHHhccCc-ccCeEEEECCHHH
Confidence            554443 3332    234568888888875 1   12222222233333322 3468899999854

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=99.89  E-value=1.1e-21  Score=198.38  Aligned_cols=197  Identities=21%  Similarity=0.283  Sum_probs=145.8

Q ss_pred             EEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHh
Q 006160          125 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL  202 (658)
Q Consensus       125 ~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~  202 (658)
                      ++++++.+++++++++++.+..+.|+||||++|.++..   .+|||||+|.+.+ ++.++|+||..  |.+|++|.+.++
T Consensus         2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~l~   77 (224)
T cd06189           2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHE-DGEIELHIRAVPGGSFSDYVFEELK   77 (224)
T ss_pred             EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCC-CCeEEEEEEecCCCccHHHHHHhcc
Confidence            57788889999999999987778999999999999753   4799999999864 47999999998  789998876431


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                      .                                                                               
T Consensus        78 ~-------------------------------------------------------------------------------   78 (224)
T cd06189          78 E-------------------------------------------------------------------------------   78 (224)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  362 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP  362 (658)
                                                                                           ++  ++.|+||
T Consensus        79 ---------------------------------------------------------------------G~--~v~i~gP   87 (224)
T cd06189          79 ---------------------------------------------------------------------NG--LVRIEGP   87 (224)
T ss_pred             ---------------------------------------------------------------------CC--EEEEecC
Confidence                                                                                 02  4779999


Q ss_pred             cCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCc
Q 006160          363 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLN  442 (658)
Q Consensus       363 yG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~  442 (658)
                      ||........+++++|||||+||||+++++++++.+.      ..++++|+|++|+.+++.+.+++ +++.    .+..+
T Consensus        88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~~l-~~l~----~~~~~  156 (224)
T cd06189          88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDLYLDELL-EAWA----EAHPN  156 (224)
T ss_pred             CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhccCHHHH-HHHH----HhCCC
Confidence            9987654345789999999999999999999998754      13579999999999998665544 3332    23457


Q ss_pred             eEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160          443 LETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       443 l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      +++..+++++++.+. ..+.+...+.... +. .+...+.+|||+..
T Consensus       157 ~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~-~~~~~v~vCGp~~m  201 (224)
T cd06189         157 FTYVPVLSEPEEGWQGRTGLVHEAVLEDF-PD-LSDFDVYACGSPEM  201 (224)
T ss_pred             eEEEEEeCCCCcCCccccccHHHHHHhhc-cC-ccccEEEEECCHHH
Confidence            888888887643222 2222222222222 21 23467899999965

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.88  E-value=1.8e-21  Score=196.94  Aligned_cols=201  Identities=14%  Similarity=0.211  Sum_probs=147.4

Q ss_pred             EEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          125 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       125 ~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      ++++++.+++++++++++.+..  +.|+||||++|+++..+...+|||||+|.+.+ .+.++|+||..  |.+|+.|.+.
T Consensus         2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~   80 (231)
T cd06215           2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVPGGLVSNWLHDN   80 (231)
T ss_pred             eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcCCCcchHHHHhc
Confidence            5778888999999999998865  79999999999998666667899999999864 46799999998  8888877543


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      +..                                                                             
T Consensus        81 ~~~-----------------------------------------------------------------------------   83 (231)
T cd06215          81 LKV-----------------------------------------------------------------------------   83 (231)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                             +.  ++.|+
T Consensus        84 -----------------------------------------------------------------------G~--~v~i~   90 (231)
T cd06215          84 -----------------------------------------------------------------------GD--ELWAS   90 (231)
T ss_pred             -----------------------------------------------------------------------CC--EEEEE
Confidence                                                                                   12  47799


Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      ||||.+.......++++|||||+||||++++++++++...      .++|+|+|++|+.+++.+.+++ +++.    .+.
T Consensus        91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~----~~~  159 (231)
T cd06215          91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP------DADIVFIHSARSPADIIFADEL-EELA----RRH  159 (231)
T ss_pred             cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC------CCcEEEEEecCChhhhhHHHHH-HHHH----HHC
Confidence            9999865332347899999999999999999999976431      3579999999999998765544 3332    233


Q ss_pred             CceEEEEEEcCCCC--CCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          441 LNLETFIYVTRETE--PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       441 ~~l~I~iyVT~~~~--~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      .++++++++|++++  +....+.+....+....+... ...+.+|||++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~v~icGp~~m  208 (231)
T cd06215         160 PNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLK-ERTVFVCGPAGF  208 (231)
T ss_pred             CCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCcc-CCeEEEECCHHH
Confidence            56899999998654  212223333322333333332 346789999966

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=99.88  E-value=6.4e-21  Score=194.39  Aligned_cols=168  Identities=21%  Similarity=0.272  Sum_probs=127.5

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC----CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN----LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  196 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~----~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~  196 (658)
                      .+++++++.+++++++++++.+..    +.|+||||+.|.++..+...+||||++|.+.+  +.++|+||..  |..|..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~~G~~s~~   80 (241)
T cd06214           3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVPGGRFSNW   80 (241)
T ss_pred             eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcCCCccchh
Confidence            467889999999999999998754    58999999999998656678899999998864  4899999997  677877


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  276 (658)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (658)
                      |.+.+..                                                                         
T Consensus        81 l~~~~~~-------------------------------------------------------------------------   87 (241)
T cd06214          81 ANDELKA-------------------------------------------------------------------------   87 (241)
T ss_pred             HHhccCC-------------------------------------------------------------------------
Confidence            7432210                                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160          277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  356 (658)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (658)
                                                                                                 +.  +
T Consensus        88 ---------------------------------------------------------------------------G~--~   90 (241)
T cd06214          88 ---------------------------------------------------------------------------GD--T   90 (241)
T ss_pred             ---------------------------------------------------------------------------CC--E
Confidence                                                                                       12  4


Q ss_pred             EEEECccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160          357 ASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  435 (658)
Q Consensus       357 v~veGPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~  435 (658)
                      +.|.||+|....... .+++++|||||+||||+++++++++....      .++++|+|++|+.+++.+.+++ .++.+ 
T Consensus        91 v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~~-  162 (241)
T cd06214          91 LEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP------ASRVTLVYGNRTEASVIFREEL-ADLKA-  162 (241)
T ss_pred             EEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC------CCcEEEEEEeCCHHHhhHHHHH-HHHHH-
Confidence            679999998754433 57899999999999999999999886531      3579999999999998555443 33321 


Q ss_pred             ccCCCCceEEEEEEcCC
Q 006160          436 FFSDKLNLETFIYVTRE  452 (658)
Q Consensus       436 ~~~~~~~l~I~iyVT~~  452 (658)
                        ....++++..++|++
T Consensus       163 --~~~~~~~~~~~~~~~  177 (241)
T cd06214         163 --RYPDRLTVIHVLSRE  177 (241)
T ss_pred             --hCcCceEEEEEecCC
Confidence              112357776666654

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=99.88  E-value=2.3e-21  Score=203.23  Aligned_cols=86  Identities=15%  Similarity=0.324  Sum_probs=64.8

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  435 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~  435 (658)
                      ++.|.||+|.+... ...+++||||||+||||+++++++++....     ..++|+|+|++|+.+++.+.+++ +++.  
T Consensus       134 ~v~i~gP~G~f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~-----~~~~v~l~~g~r~~~d~~~~~el-~~l~--  204 (283)
T cd06188         134 KVTASGPFGEFFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK-----SKRKISFWYGARSLKELFYQEEF-EALE--  204 (283)
T ss_pred             EEEEECcccccccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC-----CCceEEEEEecCCHHHhhHHHHH-HHHH--
Confidence            47899999987654 356799999999999999999999876432     13589999999999998665544 3332  


Q ss_pred             ccCCCCceEEEEEEcCC
Q 006160          436 FFSDKLNLETFIYVTRE  452 (658)
Q Consensus       436 ~~~~~~~l~I~iyVT~~  452 (658)
                        .+..++++++.+|++
T Consensus       205 --~~~~~~~~~~~~s~~  219 (283)
T cd06188         205 --KEFPNFKYHPVLSEP  219 (283)
T ss_pred             --HHCCCeEEEEEECCC
Confidence              233467777777764

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.88  E-value=4.4e-21  Score=206.51  Aligned_cols=167  Identities=21%  Similarity=0.283  Sum_probs=128.3

Q ss_pred             ceEEEEEEEEecCceEEEEEeCC---CCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  196 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p---~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~  196 (658)
                      ...+|++++.+++++.+++++.+   +.+.|+||||+.|.++..  ..+|||||+|.|.+ ++.++|+||..  |.+|+.
T Consensus       107 ~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~  183 (340)
T PRK11872        107 ISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNA-TNQLQFLIRLLPDGVMSNY  183 (340)
T ss_pred             eeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCC-CCeEEEEEEECCCCcchhh
Confidence            35788899999999999999866   457899999999999853  35899999999864 48999999996  557777


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  276 (658)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (658)
                      |++.+..                                                                         
T Consensus       184 L~~~l~~-------------------------------------------------------------------------  190 (340)
T PRK11872        184 LRERCQV-------------------------------------------------------------------------  190 (340)
T ss_pred             HhhCCCC-------------------------------------------------------------------------
Confidence            7543210                                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160          277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  356 (658)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (658)
                                                                                                 +.  +
T Consensus       191 ---------------------------------------------------------------------------G~--~  193 (340)
T PRK11872        191 ---------------------------------------------------------------------------GD--E  193 (340)
T ss_pred             ---------------------------------------------------------------------------CC--E
Confidence                                                                                       12  4


Q ss_pred             EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160          357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  436 (658)
Q Consensus       357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~  436 (658)
                      |.|+||||.+... ...++++|||||+||||+++++++++.+..      .++|+|+|++|+.+++.+.+++. ++.   
T Consensus       194 v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~------~~~v~l~~g~r~~~dl~~~~el~-~~~---  262 (340)
T PRK11872        194 ILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGC------SPPVHLYYGVRHAADLCELQRLA-AYA---  262 (340)
T ss_pred             EEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCC------CCcEEEEEecCChHHhccHHHHH-HHH---
Confidence            7799999997643 345799999999999999999999986431      35799999999999987655543 322   


Q ss_pred             cCCCCceEEEEEEcCCC
Q 006160          437 FSDKLNLETFIYVTRET  453 (658)
Q Consensus       437 ~~~~~~l~I~iyVT~~~  453 (658)
                       .+..+++++..+++.+
T Consensus       263 -~~~~~~~~~~~~s~~~  278 (340)
T PRK11872        263 -ERLPNFRYHPVVSKAS  278 (340)
T ss_pred             -HHCCCcEEEEEEeCCC
Confidence             2345688887777543

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.88  E-value=2.2e-22  Score=191.71  Aligned_cols=79  Identities=44%  Similarity=0.696  Sum_probs=59.8

Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCC
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  452 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~  452 (658)
                      |+++||||||+||||++++++++++..+++ ....++|+|+|++|+.+++.|+.+++.++......  .++++++|+|++
T Consensus         1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~-~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~--~~~~~~iyvT~~   77 (156)
T PF08030_consen    1 YDNVVLVAGGSGITPILPILRDLLQRQNRG-SSRTRRIKLVWVVRDADELEWFSPELNELLELDRL--GNVEVHIYVTRE   77 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT------EEEEEEEES-TTTTHHHHHHHHHHHHHHHH--TSEEEEEEETT-
T ss_pred             CCEEEEEecCcCHHHHHHHHHHHHHhhccc-cccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc--ccceEEEEEcCC
Confidence            789999999999999999999999887522 24578999999999999999999888765432111  579999999998


Q ss_pred             CC
Q 006160          453 TE  454 (658)
Q Consensus       453 ~~  454 (658)
                      ..
T Consensus        78 ~~   79 (156)
T PF08030_consen   78 SS   79 (156)
T ss_dssp             --
T ss_pred             cc
Confidence            75

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=99.87  E-value=3.6e-21  Score=195.75  Aligned_cols=201  Identities=18%  Similarity=0.208  Sum_probs=143.2

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC------CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN------LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT  194 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~------~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T  194 (658)
                      .++|++++.+++++++++++.+..      +.|+||||+.|.++.  ..++|||||+|.+.+ .+.++|+||..  |.+|
T Consensus         3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~-~~~l~~~i~~~~~G~~s   79 (236)
T cd06210           3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG--TDTRRSYSLANTPNW-DGRLEFLIRLLPGGAFS   79 (236)
T ss_pred             eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCC--CccceecccCCCCCC-CCEEEEEEEEcCCCccc
Confidence            467889999999999999997654      789999999999984  346899999999864 47899999987  7788


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          195 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP  274 (658)
Q Consensus       195 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (658)
                      +.|.+.+.                                                                        
T Consensus        80 ~~l~~~~~------------------------------------------------------------------------   87 (236)
T cd06210          80 TYLETRAK------------------------------------------------------------------------   87 (236)
T ss_pred             hhhhhCcC------------------------------------------------------------------------
Confidence            77754221                                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 006160          275 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK  354 (658)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (658)
                                                                                                  +++ 
T Consensus        88 ----------------------------------------------------------------------------~Gd-   90 (236)
T cd06210          88 ----------------------------------------------------------------------------VGQ-   90 (236)
T ss_pred             ----------------------------------------------------------------------------CCC-
Confidence                                                                                        012 


Q ss_pred             eEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160          355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  434 (658)
Q Consensus       355 ~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~  434 (658)
                       ++.|+||||........+++++|||||+||||+++++++++++..      .++++|+|++|+.+++.+.+++ +++. 
T Consensus        91 -~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~-  161 (236)
T cd06210          91 -RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE------PQEARLFFGVNTEAELFYLDEL-KRLA-  161 (236)
T ss_pred             -EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC------CceEEEEEecCCHHHhhhHHHH-HHHH-
Confidence             477999999964332356789999999999999999999876431      3579999999999998665544 3332 


Q ss_pred             CccCCCCceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160          435 PFFSDKLNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                         ....+++++.+++++.+.+. ..+.+.. .+.+..........+.+|||+..
T Consensus       162 ---~~~~~~~~~~~~s~~~~~~~~~~g~~~~-~l~~~l~~~~~~~~vyicGp~~m  212 (236)
T cd06210         162 ---DSLPNLTVRICVWRPGGEWEGYRGTVVD-ALREDLASSDAKPDIYLCGPPGM  212 (236)
T ss_pred             ---HhCCCeEEEEEEcCCCCCcCCccCcHHH-HHHHhhcccCCCcEEEEeCCHHH
Confidence               23457889888887543222 2222211 12222222222345789999855

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=99.87  E-value=4.3e-21  Score=195.92  Aligned_cols=204  Identities=19%  Similarity=0.218  Sum_probs=145.5

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      ..++.+++.+++++.+++++.+..  ..|+||||+.|+++..  .+.|||||+|.+.+ .+.++|+||..  |.+|+.|+
T Consensus         8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~l~   84 (238)
T cd06211           8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPSD-AGEIELHIRLVPGGIATTYVH   84 (238)
T ss_pred             eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCCC-CCEEEEEEEECCCCcchhhHh
Confidence            578889999999999999987665  4899999999999853  36799999999864 47899999998  88898885


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  278 (658)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (658)
                      +.++.                                                                           
T Consensus        85 ~~l~~---------------------------------------------------------------------------   89 (238)
T cd06211          85 KQLKE---------------------------------------------------------------------------   89 (238)
T ss_pred             hcCCC---------------------------------------------------------------------------
Confidence            32210                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160          279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  358 (658)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  358 (658)
                                                                                               +.  +|.
T Consensus        90 -------------------------------------------------------------------------G~--~v~   94 (238)
T cd06211          90 -------------------------------------------------------------------------GD--ELE   94 (238)
T ss_pred             -------------------------------------------------------------------------CC--EEE
Confidence                                                                                     12  477


Q ss_pred             EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160          359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  438 (658)
Q Consensus       359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~  438 (658)
                      |+||+|.........++++|||||+||||+++++++++++..      .++|.|+|++|+.+++.+.+ .++++.    .
T Consensus        95 i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~-~l~~l~----~  163 (238)
T cd06211          95 ISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD------TRKITLFFGARTRAELYYLD-EFEALE----K  163 (238)
T ss_pred             EECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC------CCcEEEEEecCChhhhccHH-HHHHHH----H
Confidence            999999875432345899999999999999999999986541      25799999999999985444 444432    2


Q ss_pred             CCCceEEEEEEcCCCCC--CC-CcccccccccccccCCCCCCceeEeecCCCchHH
Q 006160          439 DKLNLETFIYVTRETEP--PL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWS  491 (658)
Q Consensus       439 ~~~~l~I~iyVT~~~~~--~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w~  491 (658)
                      +..+++++..++++...  +. ..+.+ ++.+.+..+...+...+.+|||++.+..
T Consensus       164 ~~~~~~~~~~~s~~~~~~~~~~~~g~v-~~~l~~~~~~~~~~~~vyvCGp~~m~~~  218 (238)
T cd06211         164 DHPNFKYVPALSREPPESNWKGFTGFV-HDAAKKHFKNDFRGHKAYLCGPPPMIDA  218 (238)
T ss_pred             hCCCeEEEEEECCCCCCcCcccccCcH-HHHHHHhcccccccCEEEEECCHHHHHH
Confidence            34468888888875321  11 12222 2223333321223467899999966443

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=99.87  E-value=4.2e-21  Score=194.81  Aligned_cols=199  Identities=15%  Similarity=0.146  Sum_probs=142.2

Q ss_pred             EEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhc
Q 006160          127 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK  204 (658)
Q Consensus       127 ~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~  204 (658)
                      ++++.+++++++++++.+..+.|+||||++|+++..+  ..|||||+|.+.+ .+.++|+||..  |.+|+.|++.+.. 
T Consensus         2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~~~~~vk~~~~G~~s~~l~~~~~~-   77 (232)
T cd06190           2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANA-SGEWEFIIKRKPGGAASNALFDNLEP-   77 (232)
T ss_pred             CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCC-CCEEEEEEEEcCCCcchHHHhhcCCC-
Confidence            4567788999999998877789999999999998643  5699999999864 47899999987  8889888653210 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  284 (658)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (658)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (232)
T cd06190          78 --------------------------------------------------------------------------------   77 (232)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160          285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  364 (658)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG  364 (658)
                                                                                         ++  ++.|+||||
T Consensus        78 -------------------------------------------------------------------g~--~v~v~gP~G   88 (232)
T cd06190          78 -------------------------------------------------------------------GD--ELELDGPYG   88 (232)
T ss_pred             -------------------------------------------------------------------CC--EEEEECCcc
Confidence                                                                               02  477999999


Q ss_pred             CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceE
Q 006160          365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE  444 (658)
Q Consensus       365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~  444 (658)
                      .........++++|||||+||||++++++++.++...    ...+|+|+|++|+.+++.+.+++ +++.    ....+++
T Consensus        89 ~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~----~~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~~~~~  159 (232)
T cd06190          89 LAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL----SDRPVDLFYGGRTPSDLCALDEL-SALV----ALGARLR  159 (232)
T ss_pred             cceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC----CCCeEEEEEeecCHHHHhhHHHH-HHHH----HhCCCEE
Confidence            9764334568999999999999999999999875211    23689999999999998665544 3432    2345688


Q ss_pred             EEEEEcCCCCC-----CCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          445 TFIYVTRETEP-----PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       445 I~iyVT~~~~~-----~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      +++.+|++.+.     ....+. .++.+.+..+....+..+.+|||+..
T Consensus       160 ~~~~~s~~~~~~~~~~~~~~g~-v~~~l~~~~~~~~~~~~vyiCGp~~m  207 (232)
T cd06190         160 VTPAVSDAGSGSAAGWDGPTGF-VHEVVEATLGDRLAEFEFYFAGPPPM  207 (232)
T ss_pred             EEEEeCCCCCCcCCCccCCcCc-HHHHHHhhccCCccccEEEEECCHHH
Confidence            88888865431     111121 12222222222123467889999954

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PRK08051 fre FMN reductase; Validated

Probab=99.87  E-value=5.4e-21  Score=194.76  Aligned_cols=199  Identities=20%  Similarity=0.205  Sum_probs=141.6

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCc--hHHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGE--WTENLRDY  200 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~--~T~~L~~~  200 (658)
                      .+++.+++.+++++++++++.+..+.|+||||++|+++.   .+.|||||+|.|.+ ++.++|+||..++  .+.++.+.
T Consensus         4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~---~~~r~ySias~p~~-~~~l~~~v~~~~~~~~~~~~~~~   79 (232)
T PRK08051          4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGE---KDKRPFSIASTPRE-KGFIELHIGASELNLYAMAVMER   79 (232)
T ss_pred             EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCC---CcceeecccCCCCC-CCcEEEEEEEcCCCcchHHHHHH
Confidence            567888999999999999987777899999999999875   35699999999853 3789999999753  45554333


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      +..                                                                             
T Consensus        80 l~~-----------------------------------------------------------------------------   82 (232)
T PRK08051         80 ILK-----------------------------------------------------------------------------   82 (232)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                             +.  +|.|+
T Consensus        83 -----------------------------------------------------------------------G~--~v~v~   89 (232)
T PRK08051         83 -----------------------------------------------------------------------DG--EIEVD   89 (232)
T ss_pred             -----------------------------------------------------------------------CC--EEEEE
Confidence                                                                                   12  58899


Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      ||||.........+++||||||+||||+++++++++....      .++++|+|++|+.+++.+.+++ .++.    .+.
T Consensus        90 gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~------~~~v~l~~g~r~~~~~~~~~el-~~l~----~~~  158 (232)
T PRK08051         90 IPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP------NRPITLYWGGREEDHLYDLDEL-EALA----LKH  158 (232)
T ss_pred             cCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC------CCcEEEEEEeccHHHhhhhHHH-HHHH----HHC
Confidence            9999976543456899999999999999999999987541      3579999999999998554443 3432    233


Q ss_pred             CceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160          441 LNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       441 ~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      .+++++..++++++.+. ..+.+...+.... +.. .+..+.+|||+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~-~~~-~~~~vyicGp~~m  205 (232)
T PRK08051        159 PNLHFVPVVEQPEEGWQGKTGTVLTAVMQDF-GSL-AEYDIYIAGRFEM  205 (232)
T ss_pred             CCcEEEEEeCCCCCCcccceeeehHHHHhhc-cCc-ccCEEEEECCHHH
Confidence            56888777776544322 2222222222222 112 2345889999954

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=99.87  E-value=1.3e-20  Score=206.46  Aligned_cols=168  Identities=15%  Similarity=0.211  Sum_probs=128.3

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEc--CchH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT  194 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T  194 (658)
                      +.++|++++.+.+++..+++..+.   .+.|+||||+.|.++..+  ..++|||||+|.|.+  +.++|+||+.  |.+|
T Consensus       155 ~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~--~~l~~~Vk~~~~G~~S  232 (399)
T PRK13289        155 RDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNG--KYYRISVKREAGGKVS  232 (399)
T ss_pred             EEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCC--CeEEEEEEECCCCeeh
Confidence            457899999999999999998653   268999999999997433  335799999999863  6899999998  8899


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          195 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP  274 (658)
Q Consensus       195 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (658)
                      ..|.+.+..                                                                       
T Consensus       233 ~~L~~~l~~-----------------------------------------------------------------------  241 (399)
T PRK13289        233 NYLHDHVNV-----------------------------------------------------------------------  241 (399)
T ss_pred             HHHhhcCCC-----------------------------------------------------------------------
Confidence            988653211                                                                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 006160          275 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK  354 (658)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (658)
                                                                                                   |+ 
T Consensus       242 -----------------------------------------------------------------------------Gd-  243 (399)
T PRK13289        242 -----------------------------------------------------------------------------GD-  243 (399)
T ss_pred             -----------------------------------------------------------------------------CC-
Confidence                                                                                         12 


Q ss_pred             eEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160          355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  434 (658)
Q Consensus       355 ~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~  434 (658)
                       +|.|.||||.+..+....+++||||||+||||+++++++++.+.      ..++|+|+|++|+.+++.+.++ ++++. 
T Consensus       244 -~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~e-L~~l~-  314 (399)
T PRK13289        244 -VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAARNGGVHAFRDE-VEALA-  314 (399)
T ss_pred             -EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCChhhchHHHH-HHHHH-
Confidence             47899999986543235679999999999999999999997653      1358999999999999865444 33432 


Q ss_pred             CccCCCCceEEEEEEcCC
Q 006160          435 PFFSDKLNLETFIYVTRE  452 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~  452 (658)
                         ....+++++.+++++
T Consensus       315 ---~~~~~~~~~~~~s~~  329 (399)
T PRK13289        315 ---ARHPNLKAHTWYREP  329 (399)
T ss_pred             ---HhCCCcEEEEEECCC
Confidence               233467787777754

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.87  E-value=7.5e-21  Score=192.96  Aligned_cols=203  Identities=17%  Similarity=0.204  Sum_probs=145.8

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  197 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L  197 (658)
                      .+++++++.+.+++++++++.+..  +.|+||||++|+++. .+...+||||++|.+.+ .+.++|+||..  |..|+.|
T Consensus         3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~~G~~s~~l   81 (235)
T cd06217           3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVPGGEVSPYL   81 (235)
T ss_pred             eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcCCCcchHHH
Confidence            578889999999999999998776  789999999999973 34456799999999864 37899999997  5677776


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          198 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE  277 (658)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (658)
                      .+.+..                                                                          
T Consensus        82 ~~~l~~--------------------------------------------------------------------------   87 (235)
T cd06217          82 HDEVKV--------------------------------------------------------------------------   87 (235)
T ss_pred             HhcCCC--------------------------------------------------------------------------
Confidence            543210                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE
Q 006160          278 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA  357 (658)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  357 (658)
                                                                                                ++  ++
T Consensus        88 --------------------------------------------------------------------------Gd--~v   91 (235)
T cd06217          88 --------------------------------------------------------------------------GD--LL   91 (235)
T ss_pred             --------------------------------------------------------------------------CC--EE
Confidence                                                                                      12  47


Q ss_pred             EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160          358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  437 (658)
Q Consensus       358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~  437 (658)
                      .|+||||.........++++|||||+||||++++++++++...      .++++++|++|+.+++.+.+++ .++.    
T Consensus        92 ~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~~~~el-~~~~----  160 (235)
T cd06217          92 EVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW------PVPFRLLYSARTAEDVIFRDEL-EQLA----  160 (235)
T ss_pred             EEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC------CceEEEEEecCCHHHhhHHHHH-HHHH----
Confidence            7999999864332346899999999999999999999987541      3579999999999998655544 3332    


Q ss_pred             CCCCceEEEEEEcCCCC-C-CCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          438 SDKLNLETFIYVTRETE-P-PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       438 ~~~~~l~I~iyVT~~~~-~-~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      .+..+++++.++|++.. . ....+.+....+....+. .+.....+|||+..
T Consensus       161 ~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp~~m  212 (235)
T cd06217         161 RRHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPP-LAGRRVYVCGPPAF  212 (235)
T ss_pred             HHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC-ccCCEEEEECCHHH
Confidence            23356888888887622 1 112233322222333222 23467899999965

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.87  E-value=1.4e-20  Score=203.19  Aligned_cols=169  Identities=18%  Similarity=0.231  Sum_probs=126.2

Q ss_pred             eEEEEEEEEecCceEEEEEeCCC----CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  196 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~----~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~  196 (658)
                      ..+|.+++.+.+++++++++.+.    .+.|+||||+.|.++..+...+|||||+|.+.+  +.++|+||..  |.+|..
T Consensus         3 ~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~--~~l~i~vk~~~~G~~S~~   80 (352)
T TIGR02160         3 RLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAP--GEIRVAVKKIPGGLFSTW   80 (352)
T ss_pred             EeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCC--CcEEEEEEEeCCCcchHH
Confidence            56788999999999999998764    268999999999997545556899999999853  7899999997  556777


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  276 (658)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (658)
                      |.+.++.                                                                         
T Consensus        81 l~~~l~~-------------------------------------------------------------------------   87 (352)
T TIGR02160        81 ANDEIRP-------------------------------------------------------------------------   87 (352)
T ss_pred             HHhcCCC-------------------------------------------------------------------------
Confidence            7543211                                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160          277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  356 (658)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (658)
                                                                                                 |+  +
T Consensus        88 ---------------------------------------------------------------------------Gd--~   90 (352)
T TIGR02160        88 ---------------------------------------------------------------------------GD--T   90 (352)
T ss_pred             ---------------------------------------------------------------------------CC--E
Confidence                                                                                       12  4


Q ss_pred             EEEECccCCCccCc--cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160          357 ASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  434 (658)
Q Consensus       357 v~veGPyG~~~~~~--~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~  434 (658)
                      +.|.||+|.+....  ...++++|||||+||||+++++++++.+..      .++|+|+|++|+.+++.+.+++. ++..
T Consensus        91 v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~------~~~v~l~~~~r~~~d~~~~~el~-~l~~  163 (352)
T TIGR02160        91 LEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP------RSTFTLVYGNRRTASVMFAEELA-DLKD  163 (352)
T ss_pred             EEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC------CceEEEEEEeCCHHHHHHHHHHH-HHHH
Confidence            77899999864332  234799999999999999999999987531      35799999999999987665543 3221


Q ss_pred             CccCCCCceEEEEEEcCCC
Q 006160          435 PFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~~  453 (658)
                         ....+++++.+++++.
T Consensus       164 ---~~~~~~~~~~~~s~~~  179 (352)
T TIGR02160       164 ---KHPQRFHLAHVLSREP  179 (352)
T ss_pred             ---hCcCcEEEEEEecCCC
Confidence               1122477777777653

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=99.87  E-value=7.7e-21  Score=191.51  Aligned_cols=199  Identities=20%  Similarity=0.231  Sum_probs=144.3

Q ss_pred             EEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhc
Q 006160          127 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK  204 (658)
Q Consensus       127 ~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~  204 (658)
                      .+++.++++++++++..+..+.|+||||+.|.++..+. .+|||||+|.+.+ .+.++|+||..  |.+|+.|.+.+.. 
T Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~l~~-   78 (224)
T cd06187           2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNE-DGEIEFHVRAVPGGRVSNALHDELKV-   78 (224)
T ss_pred             eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCC-CCEEEEEEEeCCCCcchHHHhhcCcc-
Confidence            46678889999999998777899999999999986432 6899999999864 47899999998  8899888663211 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  284 (658)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (658)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (224)
T cd06187          79 --------------------------------------------------------------------------------   78 (224)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160          285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  364 (658)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG  364 (658)
                                                                                         ++  ++.|+||||
T Consensus        79 -------------------------------------------------------------------G~--~v~i~gP~G   89 (224)
T cd06187          79 -------------------------------------------------------------------GD--RVRLSGPYG   89 (224)
T ss_pred             -------------------------------------------------------------------CC--EEEEeCCcc
Confidence                                                                               02  477999999


Q ss_pred             CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceE
Q 006160          365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE  444 (658)
Q Consensus       365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~  444 (658)
                      ........+++++|||||+||||++++++++..+.      ..++|.++|++|+.+++.+.+++. ++.    .+..+++
T Consensus        90 ~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~~~~~l~-~~~----~~~~~~~  158 (224)
T cd06187          90 TFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLYDLEGLL-ALA----ARHPWLR  158 (224)
T ss_pred             ceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhcChHHHH-HHH----HhCCCeE
Confidence            87543334789999999999999999999998643      135799999999999987766553 321    2345688


Q ss_pred             EEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160          445 TFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       445 I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w  490 (658)
                      ++.++|++.+.+ ...+.+... +.+..+ ..+.....+|||+..+-
T Consensus       159 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~v~vcGp~~~~~  203 (224)
T cd06187         159 VVPVVSHEEGAWTGRRGLVTDV-VGRDGP-DWADHDIYICGPPAMVD  203 (224)
T ss_pred             EEEEeCCCCCccCCCcccHHHH-HHHhcc-ccccCEEEEECCHHHHH
Confidence            888888764322 122222222 222222 12346788999996633

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=99.87  E-value=8.7e-21  Score=191.21  Aligned_cols=197  Identities=16%  Similarity=0.185  Sum_probs=141.7

Q ss_pred             EEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhc
Q 006160          127 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK  204 (658)
Q Consensus       127 ~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~  204 (658)
                      .+++.+++++++++++.+..+.|+||||++|+++.   ...|||||+|.+.+ .+.++|+||..  |.+|+.|.+.++. 
T Consensus         2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~---~~~r~ySi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~~~~-   76 (222)
T cd06194           2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAG---GLARSYSPTSLPDG-DNELEFHIRRKPNGAFSGWLGEEARP-   76 (222)
T ss_pred             ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCC---CCceeeecCCCCCC-CCEEEEEEEeccCCccchHHHhccCC-
Confidence            46677899999999998878899999999999975   24699999999864 37899999986  7788877653311 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  284 (658)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (658)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (222)
T cd06194          77 --------------------------------------------------------------------------------   76 (222)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160          285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  364 (658)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG  364 (658)
                                                                                         +.  ++.|+||||
T Consensus        77 -------------------------------------------------------------------G~--~v~i~gP~G   87 (222)
T cd06194          77 -------------------------------------------------------------------GH--ALRLQGPFG   87 (222)
T ss_pred             -------------------------------------------------------------------CC--EEEEecCcC
Confidence                                                                               02  477999999


Q ss_pred             CCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCce
Q 006160          365 HEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNL  443 (658)
Q Consensus       365 ~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l  443 (658)
                      ...... ..+++++|||||+||||+++++++++.+..      .++|+|+|++|+.+++.+.+++ +++.    ....++
T Consensus        88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~~~~  156 (222)
T cd06194          88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH------QGEIRLVHGARDPDDLYLHPAL-LWLA----REHPNF  156 (222)
T ss_pred             CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC------CccEEEEEecCChhhccCHHHH-HHHH----HHCCCe
Confidence            876542 466899999999999999999999986431      3679999999999998655444 3332    234568


Q ss_pred             EEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchHH
Q 006160          444 ETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWS  491 (658)
Q Consensus       444 ~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w~  491 (658)
                      +++.+++++...+.. . ....+.... +...+...+.+|||...+..
T Consensus       157 ~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~vyicGp~~m~~~  201 (222)
T cd06194         157 RYIPCVSEGSQGDPR-V-RAGRIAAHL-PPLTRDDVVYLCGAPSMVNA  201 (222)
T ss_pred             EEEEEEccCCCCCcc-c-ccchhhhhh-ccccCCCEEEEeCCHHHHHH
Confidence            888888875432111 0 011111111 12234577899999976443

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=99.86  E-value=1.6e-20  Score=193.15  Aligned_cols=142  Identities=26%  Similarity=0.368  Sum_probs=114.0

Q ss_pred             EEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhc
Q 006160          127 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK  204 (658)
Q Consensus       127 ~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~  204 (658)
                      .+++.+.+++++++++.+. .+.|+||||+.|.++. .+.+.+||||++|.+.+ +++++|+||..|.+|+.|.+.    
T Consensus         2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~G~~s~~l~~l----   76 (246)
T cd06218           2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVVGKGTRLLSEL----   76 (246)
T ss_pred             cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEECcchHHHhcC----
Confidence            4567888999999999876 5789999999999986 45678899999998853 479999999999998766321    


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  284 (658)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (658)
                      .                                                                               
T Consensus        77 ~-------------------------------------------------------------------------------   77 (246)
T cd06218          77 K-------------------------------------------------------------------------------   77 (246)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160          285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  364 (658)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG  364 (658)
                                                                                        ++.  ++.|+||||
T Consensus        78 ------------------------------------------------------------------~Gd--~v~i~gP~G   89 (246)
T cd06218          78 ------------------------------------------------------------------AGD--ELDVLGPLG   89 (246)
T ss_pred             ------------------------------------------------------------------CCC--EEEEEecCC
Confidence                                                                              012  578999999


Q ss_pred             CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      ..+......++++|||||+||||++++++++..+.        ++++|+|++|+.+++.+.+++
T Consensus        90 ~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~eL  145 (246)
T cd06218          90 NGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG--------IKVTVLLGFRSADDLFLVEEF  145 (246)
T ss_pred             CCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC--------CceEEEEEccchhhhhhHHHH
Confidence            75443235789999999999999999999987621        479999999999998665544

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=99.86  E-value=1.9e-20  Score=187.60  Aligned_cols=196  Identities=19%  Similarity=0.290  Sum_probs=144.0

Q ss_pred             EEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhcCC
Q 006160          129 ASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSE  206 (658)
Q Consensus       129 v~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~~~  206 (658)
                      .+.+.++++++++..+..+.|+||||+.|.++..+...+|||||+|.+.+ .+.++|+||..  |.+|+.|.+.  +.  
T Consensus         3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~~G~~s~~l~~~--~~--   77 (223)
T cd00322           3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVPGGPFSAWLHDL--KP--   77 (223)
T ss_pred             eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeCCCchhhHHhcC--CC--
Confidence            45677899999999877789999999999999766778999999999864 47999999999  9999988543  00  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          207 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPH  286 (658)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (658)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (223)
T cd00322          78 --------------------------------------------------------------------------------   77 (223)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCC
Q 006160          287 PPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHE  366 (658)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~  366 (658)
                                                                                       +.  ++.|+||+|..
T Consensus        78 -----------------------------------------------------------------G~--~v~i~gP~G~~   90 (223)
T cd00322          78 -----------------------------------------------------------------GD--EVEVSGPGGDF   90 (223)
T ss_pred             -----------------------------------------------------------------CC--EEEEECCCccc
Confidence                                                                             02  47799999998


Q ss_pred             ccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEE
Q 006160          367 VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETF  446 (658)
Q Consensus       367 ~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~  446 (658)
                      ......+++++|||||+||||++++++++.+..      ..++++|+|++|+.+++.+.+++. ++.    ....+++++
T Consensus        91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~el~-~l~----~~~~~~~~~  159 (223)
T cd00322          91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFLDELE-ELA----KEGPNFRLV  159 (223)
T ss_pred             ccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHHHHHH-HHH----HhCCCeEEE
Confidence            544457789999999999999999999998753      135799999999999886655543 332    234568888


Q ss_pred             EEEcCCCCCCCCc-cccc-ccccccccCCCCCCceeEeecCCCc
Q 006160          447 IYVTRETEPPLEE-GELH-KTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       447 iyVT~~~~~~~~~-~~~~-~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      ++++++...+... .... ...+.+.. ...+.....+|||+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~yvCGp~~m  202 (223)
T cd00322         160 LALSRESEAKLGPGGRIDREAEILALL-PDDSGALVYICGPPAM  202 (223)
T ss_pred             EEecCCCCCCCcccceeeHHHHHHhhc-ccccCCEEEEECCHHH
Confidence            8888765432211 1111 01111211 1234577899999965

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.86  E-value=1e-20  Score=191.64  Aligned_cols=149  Identities=18%  Similarity=0.259  Sum_probs=116.5

Q ss_pred             EEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCC----------------CCCcceeEEeeeCCCCC--CCeEEEEE
Q 006160          129 ASCLPCGTVELVLSKPAN---LRYNALSFFFLQVREL----------------SWLQWHPFSVSSSPLEG--KYHSSVLI  187 (658)
Q Consensus       129 v~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~i----------------s~~q~HPFTIaS~p~~~--~~~lsl~I  187 (658)
                      .+.+++++.++++..+..   +.|+|||||+|+++..                +...+|+|||+|.|.++  .+.++|+|
T Consensus         3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v   82 (220)
T cd06197           3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV   82 (220)
T ss_pred             ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence            456788999999988766   8999999999999752                22457899999999653  27899999


Q ss_pred             EEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160          188 KVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG  267 (658)
Q Consensus       188 R~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~  267 (658)
                      |+.|++|+.|++.......                                                             
T Consensus        83 k~~G~~T~~L~~~~~~~~~-------------------------------------------------------------  101 (220)
T cd06197          83 RKKGPVTGFLFQVARRLRE-------------------------------------------------------------  101 (220)
T ss_pred             EeCCCCCHHHHHhhhcccC-------------------------------------------------------------
Confidence            9999999999887643110                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (658)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (220)
T cd06197         102 --------------------------------------------------------------------------------  101 (220)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEECccCCCccCc---cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhh
Q 006160          348 PLLPPTKITASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSL  424 (658)
Q Consensus       348 ~~~~~~~~~v~veGPyG~~~~~~---~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~  424 (658)
                           .--++.|+||||.+....   ..+++++|||||+||||+++++++++++..     ..++|+|+|++|+.+++.+
T Consensus       102 -----~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~-----~~~~v~l~~~~r~~~~~~~  171 (220)
T cd06197         102 -----QGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN-----TTWDITLLWSLREDDLPLV  171 (220)
T ss_pred             -----CCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc-----CCCcEEEEEEecchhhHHH
Confidence                 001578999999865332   357899999999999999999999986431     1358999999999998866


Q ss_pred             HHHH
Q 006160          425 LSNF  428 (658)
Q Consensus       425 l~~~  428 (658)
                      .+++
T Consensus       172 ~~el  175 (220)
T cd06197         172 MDTL  175 (220)
T ss_pred             HHHH
Confidence            5554

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=99.85  E-value=3.5e-20  Score=191.52  Aligned_cols=196  Identities=20%  Similarity=0.312  Sum_probs=136.3

Q ss_pred             EEEEEecCceEEEEEeCCC----CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160          127 LSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  202 (658)
Q Consensus       127 ~sv~~l~~~v~~l~i~~p~----~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~  202 (658)
                      .+++.+++++.+++++.+.    .+.|+||||++|.++..+.   |||||+|.+.+ ++.++|+||..|.+|+.|.+. +
T Consensus         2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~~---~pySi~s~~~~-~~~l~~~Ik~~G~~S~~L~~l-~   76 (253)
T cd06221           2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVGE---APISISSDPTR-RGPLELTIRRVGRVTEALHEL-K   76 (253)
T ss_pred             ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCCc---cceEecCCCCC-CCeEEEEEEeCChhhHHHHcC-C
Confidence            4667788876666555433    3799999999999986433   99999999964 479999999999999877431 0


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                      .                                                                               
T Consensus        77 ~-------------------------------------------------------------------------------   77 (253)
T cd06221          77 P-------------------------------------------------------------------------------   77 (253)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  362 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP  362 (658)
                                                                                           +.  ++.++||
T Consensus        78 ---------------------------------------------------------------------G~--~v~i~gP   86 (253)
T cd06221          78 ---------------------------------------------------------------------GD--TVGLRGP   86 (253)
T ss_pred             ---------------------------------------------------------------------CC--EEEEECC
Confidence                                                                                 02  4779999


Q ss_pred             cCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160          363 YGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  441 (658)
Q Consensus       363 yG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~  441 (658)
                      ||..+.... .++++||||||+||||+++++++++++..     ..++++|+|++|+.+++.+.+++ .++.    .+ .
T Consensus        87 ~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~-----~~~~i~Li~~~r~~~~~~~~~~L-~~l~----~~-~  155 (253)
T cd06221          87 FGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE-----DYGKVTLLYGARTPEDLLFKEEL-KEWA----KR-S  155 (253)
T ss_pred             cCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc-----cCCcEEEEEecCChHHcchHHHH-HHHH----hc-C
Confidence            998654322 57899999999999999999999987531     13689999999999998655444 3432    23 5


Q ss_pred             ceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCch
Q 006160          442 NLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  489 (658)
Q Consensus       442 ~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~  489 (658)
                      +++++++++++.+.+........+.+.+....+ ......+|||++.+
T Consensus       156 ~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~-~~~~vyicGp~~mv  202 (253)
T cd06221         156 DVEVILTVDRAEEGWTGNVGLVTDLLPELTLDP-DNTVAIVCGPPIMM  202 (253)
T ss_pred             CeEEEEEeCCCCCCccCCccccchhHHhcCCCc-CCcEEEEECCHHHH
Confidence            688888888654322211111122222222222 35678999999663

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.84  E-value=6.3e-20  Score=196.80  Aligned_cols=204  Identities=12%  Similarity=0.152  Sum_probs=145.3

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      ..+|.+++.+.++++.+++..+..+.|+||||+.|.++.. ...+|||||+|.|.+ .+.++|+||..  |..|+.|++.
T Consensus        11 ~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~-~~~l~i~Vk~~~~G~~S~~L~~~   88 (332)
T PRK10684         11 RMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGV-SEFITLTVRRIDDGVGSQWLTRD   88 (332)
T ss_pred             eEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCC-CCcEEEEEEEcCCCcchhHHHhc
Confidence            5788899999999999999877778999999999999843 345799999999864 36899999997  7788887653


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      ++.                                                                             
T Consensus        89 l~~-----------------------------------------------------------------------------   91 (332)
T PRK10684         89 VKR-----------------------------------------------------------------------------   91 (332)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            211                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                             |+  ++.+.
T Consensus        92 -----------------------------------------------------------------------Gd--~v~v~   98 (332)
T PRK10684         92 -----------------------------------------------------------------------GD--YLWLS   98 (332)
T ss_pred             -----------------------------------------------------------------------CC--EEEEe
Confidence                                                                                   12  47789


Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      ||+|.+.......+++||||||+||||+++++++++.+..      .++|+|+|++|+.+++.+.+++. ++.    .+.
T Consensus        99 gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~------~~~v~l~y~~r~~~~~~~~~el~-~l~----~~~  167 (332)
T PRK10684         99 DAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP------QADVQVIFNVRTPQDVIFADEWR-QLK----QRY  167 (332)
T ss_pred             CCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC------CCCEEEEEeCCChHHhhhHHHHH-HHH----HHC
Confidence            9999965432456789999999999999999999876431      35799999999999987665543 332    233


Q ss_pred             CceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160          441 LNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       441 ~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w  490 (658)
                      .+++++++.++........+.+...++....+... ...+.+|||+..+-
T Consensus       168 ~~~~~~~~~~~~~~~~~~~grl~~~~l~~~~~~~~-~~~vyiCGP~~m~~  216 (332)
T PRK10684        168 PQLNLTLVAENNATEGFIAGRLTRELLQQAVPDLA-SRTVMTCGPAPYMD  216 (332)
T ss_pred             CCeEEEEEeccCCCCCccccccCHHHHHHhccccc-CCEEEEECCHHHHH
Confidence            45777766664322111123333233333334332 35688999996643

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=99.84  E-value=8e-20  Score=183.70  Aligned_cols=192  Identities=23%  Similarity=0.289  Sum_probs=138.7

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCC-CCcceeEEeeeCCCCCCCeEEEEEEEc---CchHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELS-WLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWTENLR  198 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is-~~q~HPFTIaS~p~~~~~~lsl~IR~~---G~~T~~L~  198 (658)
                      +.++.+++.+++++++++++.+..+.|+||||++|.++..+ +.++||||++|.+.+  +.++|+||..   |++|+.|.
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~~~g~~s~~l~   79 (218)
T cd06196           2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYPDHDGVTEQLG   79 (218)
T ss_pred             ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcCCCCcHhHHHH
Confidence            36788999999999999999888889999999999997543 357899999999864  7999999986   67887763


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  278 (658)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (658)
                      +. .                                                                            
T Consensus        80 ~l-~----------------------------------------------------------------------------   82 (218)
T cd06196          80 RL-Q----------------------------------------------------------------------------   82 (218)
T ss_pred             hC-C----------------------------------------------------------------------------
Confidence            21 0                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160          279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  358 (658)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  358 (658)
                                                                                              +++  ++.
T Consensus        83 ------------------------------------------------------------------------~G~--~v~   88 (218)
T cd06196          83 ------------------------------------------------------------------------PGD--TLL   88 (218)
T ss_pred             ------------------------------------------------------------------------CCC--EEE
Confidence                                                                                    012  477


Q ss_pred             EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160          359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  438 (658)
Q Consensus       359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~  438 (658)
                      ++||||....    .+++||||||+||||+++++++++...      ..++++|+|++|+.+++.+.+++ +++      
T Consensus        89 i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l------  151 (218)
T cd06196          89 IEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------KLEGNTLIFANKTEKDIILKDEL-EKM------  151 (218)
T ss_pred             EECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------CCceEEEEEecCCHHHHhhHHHH-HHh------
Confidence            9999998532    267999999999999999999998743      13579999999999988655444 332      


Q ss_pred             CCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          439 DKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       439 ~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                        .++++..++|++.......+.+...++.+..+.  +...+.+|||+..
T Consensus       152 --~~~~~~~~~s~~~~~~~~~g~~~~~~l~~~~~~--~~~~vyiCGp~~m  197 (218)
T cd06196         152 --LGLKFINVVTDEKDPGYAHGRIDKAFLKQHVTD--FNQHFYVCGPPPM  197 (218)
T ss_pred             --hcceEEEEEcCCCCCCeeeeEECHHHHHHhcCC--CCCEEEEECCHHH
Confidence              135666777875432111233333333333322  2356789999854

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=99.84  E-value=2e-19  Score=189.49  Aligned_cols=168  Identities=21%  Similarity=0.367  Sum_probs=126.0

Q ss_pred             ceEEEEEEEEecCc--eEEEEEeCC---CCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHH
Q 006160          122 RTVDVLSASCLPCG--TVELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTEN  196 (658)
Q Consensus       122 ~~~~v~sv~~l~~~--v~~l~i~~p---~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~  196 (658)
                      +..++++++.++++  .+.+++..+   ..+.|+||||++|+++..+   .|||||+|.+.+ .+.++|+||..|.+|+.
T Consensus         6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~-~~~l~l~Ik~~G~~S~~   81 (289)
T PRK08345          6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTR-KGFFELCIRRAGRVTTV   81 (289)
T ss_pred             eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCC-CCEEEEEEEeCChHHHH
Confidence            35788899999887  556665544   2378999999999998643   389999999864 47899999999999997


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  276 (658)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (658)
                      |.+ +..                                                                         
T Consensus        82 L~~-l~~-------------------------------------------------------------------------   87 (289)
T PRK08345         82 IHR-LKE-------------------------------------------------------------------------   87 (289)
T ss_pred             HHh-CCC-------------------------------------------------------------------------
Confidence            743 100                                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160          277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  356 (658)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (658)
                                                                                                 ++  +
T Consensus        88 ---------------------------------------------------------------------------Gd--~   90 (289)
T PRK08345         88 ---------------------------------------------------------------------------GD--I   90 (289)
T ss_pred             ---------------------------------------------------------------------------CC--E
Confidence                                                                                       12  4


Q ss_pred             EEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160          357 ASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  435 (658)
Q Consensus       357 v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~  435 (658)
                      +.|+||||..+.. ....++++|||||+||||+++++++++++..     ..++|+|+|++|+.+|+.+.+++. ++.  
T Consensus        91 v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~-----~~~~v~l~~~~r~~~d~~~~deL~-~l~--  162 (289)
T PRK08345         91 VGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW-----KYGNITLIYGAKYYEDLLFYDELI-KDL--  162 (289)
T ss_pred             EEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC-----CCCcEEEEEecCCHHHhhHHHHHH-HHH--
Confidence            7799999985432 1234689999999999999999999886431     135899999999999997665553 332  


Q ss_pred             ccCCCCceEEEEEEcCCCC
Q 006160          436 FFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       436 ~~~~~~~l~I~iyVT~~~~  454 (658)
                        .+..+++++.+++++++
T Consensus       163 --~~~~~~~~~~~~s~~~~  179 (289)
T PRK08345        163 --AEAENVKIIQSVTRDPE  179 (289)
T ss_pred             --hcCCCEEEEEEecCCCC
Confidence              24457899999998654

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=99.84  E-value=2.6e-19  Score=178.94  Aligned_cols=68  Identities=6%  Similarity=0.047  Sum_probs=54.7

Q ss_pred             EEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCc---hHHHHHH
Q 006160          128 SASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGE---WTENLRD  199 (658)
Q Consensus       128 sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~---~T~~L~~  199 (658)
                      +++.+.+++++++++.+..   ..|+||||++|+++.   ...|||||+|.+.+ .+.++|+||..++   +|..|.+
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~-~~~l~~~v~~~~~g~~~s~~l~~   75 (211)
T cd06185           2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPAD-RDRYRIAVLREPASRGGSRYMHE   75 (211)
T ss_pred             ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCC-CCEEEEEEEeccCCCchHHHHHh
Confidence            4567889999999998765   389999999999976   35799999999864 4899999998742   5666543

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=99.84  E-value=1.2e-19  Score=183.75  Aligned_cols=205  Identities=19%  Similarity=0.239  Sum_probs=144.6

Q ss_pred             EEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160          125 DVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  199 (658)
Q Consensus       125 ~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~  199 (658)
                      ++.+.+.+++++.+++++.+.   .+.|+||||++|.++..+....||||++|.+.+ .+.++|+||..  |..|+.|.+
T Consensus         2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~~G~~s~~l~~   80 (234)
T cd06183           2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYPGGKMSQYLHS   80 (234)
T ss_pred             EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECCCCcchhHHhc
Confidence            567788899999999998775   378999999999999766778999999998864 36899999997  778877632


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  279 (658)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (658)
                      . .                                                                             
T Consensus        81 ~-~-----------------------------------------------------------------------------   82 (234)
T cd06183          81 L-K-----------------------------------------------------------------------------   82 (234)
T ss_pred             C-C-----------------------------------------------------------------------------
Confidence            1 0                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160          280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  359 (658)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  359 (658)
                                                                                             +++  ++.|
T Consensus        83 -----------------------------------------------------------------------~G~--~v~i   89 (234)
T cd06183          83 -----------------------------------------------------------------------PGD--TVEI   89 (234)
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   012  4779


Q ss_pred             ECccCCCccCccc-cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160          360 EGPYGHEVPYHLM-YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  438 (658)
Q Consensus       360 eGPyG~~~~~~~~-~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~  438 (658)
                      +||||........ ++++||||||+||||+++++++++.+..     ..++|+|+|++|+.+++.+.++ ++++..   .
T Consensus        90 ~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-----~~~~i~l~~~~r~~~~~~~~~~-l~~~~~---~  160 (234)
T cd06183          90 RGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE-----DKTKISLLYANRTEEDILLREE-LDELAK---K  160 (234)
T ss_pred             ECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-----cCcEEEEEEecCCHHHhhhHHH-HHHHHH---h
Confidence            9999986433223 3799999999999999999999986531     1368999999999998854444 334321   1


Q ss_pred             CCCceEEEEEEcCCCCCC-CCcccccccccccccCC-CCCCceeEeecCCCchH
Q 006160          439 DKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPV-PSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       439 ~~~~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~-~~d~~~~~v~Gp~~~~w  490 (658)
                      ...+++++.++|+....+ ...+.+...++.+..+. +.....+.+|||++.+-
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~  214 (234)
T cd06183         161 HPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIE  214 (234)
T ss_pred             CcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHH
Confidence            125688888888754322 11222222222233322 23456789999996643

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.83  E-value=3.9e-19  Score=195.97  Aligned_cols=86  Identities=16%  Similarity=0.399  Sum_probs=65.4

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  435 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~  435 (658)
                      ++.|+||+|.+... ...++++|||||+||||+++++++++++.+     ..++++|+|++|+.+++.+.+++. ++.  
T Consensus       258 ~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~-----~~~~v~L~~g~r~~~d~~~~~el~-~l~--  328 (409)
T PRK05464        258 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYVEDFD-QLA--  328 (409)
T ss_pred             EEEEEccccCcEec-CCCceEEEEEeccChhHHHHHHHHHHhCCC-----CCceEEEEEecCCHHHhhHHHHHH-HHH--
Confidence            47799999998654 456899999999999999999998876532     135899999999999987666553 322  


Q ss_pred             ccCCCCceEEEEEEcCC
Q 006160          436 FFSDKLNLETFIYVTRE  452 (658)
Q Consensus       436 ~~~~~~~l~I~iyVT~~  452 (658)
                        .+..++++++.++++
T Consensus       329 --~~~~~~~~~~~~s~~  343 (409)
T PRK05464        329 --AENPNFKWHVALSDP  343 (409)
T ss_pred             --HhCCCeEEEEEEcCC
Confidence              234567777777654

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.83  E-value=8.1e-19  Score=178.93  Aligned_cols=133  Identities=21%  Similarity=0.360  Sum_probs=109.4

Q ss_pred             EEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhc
Q 006160          125 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK  204 (658)
Q Consensus       125 ~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~  204 (658)
                      ++.+++.+++++.+++++.+  +.|+||||+.|+++..   ..||||++|.|    +.++|+||..|.+|+.|.+ ++. 
T Consensus         2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~-l~~-   70 (233)
T cd06220           2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD-LKE-   70 (233)
T ss_pred             EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh-cCC-
Confidence            67888899999999999864  5899999999999754   35999999997    5899999999999998865 211 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  284 (658)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (658)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (233)
T cd06220          71 --------------------------------------------------------------------------------   70 (233)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160          285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  364 (658)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG  364 (658)
                                                                                         ++  ++.|+||||
T Consensus        71 -------------------------------------------------------------------Gd--~v~i~gP~G   81 (233)
T cd06220          71 -------------------------------------------------------------------GD--KLGIRGPYG   81 (233)
T ss_pred             -------------------------------------------------------------------CC--EEEEECcCC
Confidence                                                                               02  467999999


Q ss_pred             CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      ..+..  ++++++|||||+||||+++++++++++         ++++|+|++|+.+++.+.+++
T Consensus        82 ~~f~~--~~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~~~~~eL  134 (233)
T cd06220          82 NGFEL--VGGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEELLFLDRL  134 (233)
T ss_pred             CCccC--CCCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHChhHHHH
Confidence            85432  278999999999999999999998753         469999999999998655443

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=99.83  E-value=4.5e-19  Score=182.75  Aligned_cols=146  Identities=19%  Similarity=0.325  Sum_probs=119.5

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYI  201 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~  201 (658)
                      +..++++++.+++++++++++.+..+.|+||||++|.++..++..+|||||+|.+ +  ++++|+||..|.+|+.|.+. 
T Consensus         5 ~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~--~~l~l~Vk~~G~~t~~l~~l-   80 (250)
T PRK00054          5 ENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-K--NEITILYRKVGEGTKKLSKL-   80 (250)
T ss_pred             eEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-C--CEEEEEEEEcChHHHHHhcC-
Confidence            3578889999999999999997767899999999999997666789999999998 3  79999999999999876421 


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP  281 (658)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (658)
                         .                                                                            
T Consensus        81 ---~----------------------------------------------------------------------------   81 (250)
T PRK00054         81 ---K----------------------------------------------------------------------------   81 (250)
T ss_pred             ---C----------------------------------------------------------------------------
Confidence               0                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEEC
Q 006160          282 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG  361 (658)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veG  361 (658)
                                                                                           +++  ++.|+|
T Consensus        82 ---------------------------------------------------------------------~G~--~v~i~g   90 (250)
T PRK00054         82 ---------------------------------------------------------------------EGD--ELDIRG   90 (250)
T ss_pred             ---------------------------------------------------------------------CCC--EEEEEc
Confidence                                                                                 012  478999


Q ss_pred             ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHH
Q 006160          362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY  429 (658)
Q Consensus       362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l  429 (658)
                      |||..+..-...++++|||||+||||++++++++.++.        ++++|+|++|+.+++.+.+++.
T Consensus        91 P~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~el~  150 (250)
T PRK00054         91 PLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG--------VEVTTVLGARTKDEVIFEEEFA  150 (250)
T ss_pred             ccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC--------CcEEEEEEcCCHHHhhhHHHHH
Confidence            99985443236689999999999999999999987532        3699999999999986655543

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=99.82  E-value=3.3e-19  Score=187.16  Aligned_cols=191  Identities=17%  Similarity=0.249  Sum_probs=135.3

Q ss_pred             EEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160          124 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  202 (658)
Q Consensus       124 ~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~  202 (658)
                      .++++.+.+++++++++++.+. ...|+||||++|+++..  .++|||||+|.+.+ ++.++|+||..|..|+.|.+. .
T Consensus         2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~-~~~i~l~vk~~G~~T~~L~~l-~   77 (281)
T PRK06222          2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDRE-KGTITIVFQAVGKSTRKLAEL-K   77 (281)
T ss_pred             cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCC-CCEEEEEEEeCCcHHHHHhcC-C
Confidence            4678888999999999998765 35799999999999743  35799999998754 478999999999999987421 0


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (281)
T PRK06222         78 --------------------------------------------------------------------------------   77 (281)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEEC
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG  361 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veG  361 (658)
                                                                                          +++  ++ .|+|
T Consensus        78 --------------------------------------------------------------------~Gd--~v~~i~G   87 (281)
T PRK06222         78 --------------------------------------------------------------------EGD--SILDVVG   87 (281)
T ss_pred             --------------------------------------------------------------------CCC--EEeeEEc
Confidence                                                                                012  46 5999


Q ss_pred             ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160          362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  441 (658)
Q Consensus       362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~  441 (658)
                      |||+.+.. ..+++++|||||+||||++++++++.++.        .+|+++|++|+.+++.+.+++. ++.     .  
T Consensus        88 P~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~d~~~~~el~-~~~-----~--  150 (281)
T PRK06222         88 PLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEAG--------NKVITIIGARNKDLLILEDEMK-AVS-----D--  150 (281)
T ss_pred             CCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHCC--------CeEEEEEecCCHHHhhcHHHHH-hhC-----C--
Confidence            99997653 34679999999999999999999986532        3799999999999987665543 221     1  


Q ss_pred             ceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160          442 NLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       442 ~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w  490 (658)
                        ++  +++.++.+....+. .++++....+...+...+.+|||+..+-
T Consensus       151 --~~--~v~~~d~~~g~~G~-v~~~l~~~~~~~~~~~~vy~CGP~~M~~  194 (281)
T PRK06222        151 --EL--YVTTDDGSYGRKGF-VTDVLKELLESGKKVDRVVAIGPVIMMK  194 (281)
T ss_pred             --eE--EEEcCCCCcCcccc-hHHHHHHHhhcCCCCcEEEEECCHHHHH
Confidence              12  23333332222222 2233444444332235689999996643

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.82  E-value=7e-19  Score=193.69  Aligned_cols=86  Identities=16%  Similarity=0.367  Sum_probs=64.8

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  435 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~  435 (658)
                      ++.|+||+|.+... ...+++||||||+||||+++++++++.+.+     ..++++|+|++|+.+++.+.+++. ++.  
T Consensus       254 ~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~~el~-~l~--  324 (405)
T TIGR01941       254 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQEDFD-QLE--  324 (405)
T ss_pred             EEEEEeccCCCeec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHHHHHH-HHH--
Confidence            47799999998653 356789999999999999999998776432     135799999999999987665543 322  


Q ss_pred             ccCCCCceEEEEEEcCC
Q 006160          436 FFSDKLNLETFIYVTRE  452 (658)
Q Consensus       436 ~~~~~~~l~I~iyVT~~  452 (658)
                        .+..+++++++++++
T Consensus       325 --~~~~~~~~~~~~s~~  339 (405)
T TIGR01941       325 --AENPNFVWHVALSDP  339 (405)
T ss_pred             --HhCCCeEEEEEeCCC
Confidence              244568887777754

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=99.81  E-value=1.2e-18  Score=179.72  Aligned_cols=201  Identities=19%  Similarity=0.161  Sum_probs=139.2

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      .++|.+++.+.+++++++++.+. ..|+||||+.|.++..+...+|||||+|.|.+  +.++|+||..  |.+|+.|.+ 
T Consensus         6 ~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~~~~G~~S~~L~~-   81 (248)
T PRK10926          6 TGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVTVPEGKLSPRLAA-   81 (248)
T ss_pred             EEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEEeCCCCcChHHHh-
Confidence            57888999999999999998763 37999999999996444456799999999854  5899999997  888887742 


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      ++.                                                                             
T Consensus        82 l~~-----------------------------------------------------------------------------   84 (248)
T PRK10926         82 LKP-----------------------------------------------------------------------------   84 (248)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            211                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                             |+  +|.|.
T Consensus        85 -----------------------------------------------------------------------Gd--~v~i~   91 (248)
T PRK10926         85 -----------------------------------------------------------------------GD--EVQVV   91 (248)
T ss_pred             -----------------------------------------------------------------------CC--EEEEe
Confidence                                                                                   12  47799


Q ss_pred             CccCCCcc-Cc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160          361 GPYGHEVP-YH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  438 (658)
Q Consensus       361 GPyG~~~~-~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~  438 (658)
                      ||+|..+. +. ...++++|||||+||||++++++++.+..      ..++|+|+|++|+.+++.+.+++. ++.    .
T Consensus        92 gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~~~d~~~~~el~-~l~----~  160 (248)
T PRK10926         92 SEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARYAADLSYLPLMQ-ELE----Q  160 (248)
T ss_pred             cCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCcHHHHHHHHHHH-HHH----H
Confidence            99854432 21 13478999999999999999999986433      135799999999999986655543 332    1


Q ss_pred             CC-CceEEEEEEcCCCCCCCCcccccc----ccccccc--CCCCCCceeEeecCCCc
Q 006160          439 DK-LNLETFIYVTRETEPPLEEGELHK----TMSSSIY--PVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       439 ~~-~~l~I~iyVT~~~~~~~~~~~~~~----~~v~~~~--P~~~d~~~~~v~Gp~~~  488 (658)
                      +. .+++++..+++++......+.+..    ..+....  +...+...+.+|||+.-
T Consensus       161 ~~~~~~~v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~M  217 (248)
T PRK10926        161 RYEGKLRIQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQM  217 (248)
T ss_pred             hCcCCEEEEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHH
Confidence            22 368888888875532211222211    1011111  11124567899999964

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=99.81  E-value=6.5e-19  Score=180.51  Aligned_cols=142  Identities=26%  Similarity=0.330  Sum_probs=113.8

Q ss_pred             EEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcC
Q 006160          127 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS  205 (658)
Q Consensus       127 ~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~  205 (658)
                      ++++.+++++++++++.|. .+.|+||||++|+++......+|||||+|.+.+ .++++|+||..|.+|+.|.+. .   
T Consensus         2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~G~~t~~l~~~-~---   76 (243)
T cd06192           2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIRGPKTKLIAEL-K---   76 (243)
T ss_pred             ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEcCchHHHHHhC-C---
Confidence            4567788999999999765 378999999999997545668899999999854 489999999999999877421 0   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          206 ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGP  285 (658)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (658)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (243)
T cd06192          77 --------------------------------------------------------------------------------   76 (243)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCC
Q 006160          286 HPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGH  365 (658)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~  365 (658)
                                                                                       ++.  ++.|+||||.
T Consensus        77 -----------------------------------------------------------------~G~--~l~i~gP~G~   89 (243)
T cd06192          77 -----------------------------------------------------------------PGE--KLDVMGPLGN   89 (243)
T ss_pred             -----------------------------------------------------------------CCC--EEEEEccCCC
Confidence                                                                             012  4779999998


Q ss_pred             CccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          366 EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       366 ~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      ........++++|||||+||||++++++++.++.        ++++++|++|+.+|+.+.+++
T Consensus        90 ~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~el  144 (243)
T cd06192          90 GFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG--------NKVTVLAGAKKAKEEFLDEYF  144 (243)
T ss_pred             CCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC--------CeEEEEEecCcHHHHHHHHHH
Confidence            7554334789999999999999999999987532        479999999999988554443

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=99.81  E-value=4.8e-18  Score=176.80  Aligned_cols=148  Identities=27%  Similarity=0.354  Sum_probs=125.3

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCCC--CcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPANL--RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  197 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~~--~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L  197 (658)
                      ...+|.+++...++++.+++..+.+.  .|+||||+.|.++..+...++.|||+|+|.++ +.+.|.||+.  |..|+.|
T Consensus         6 ~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~-~~~~isVk~~~~G~~S~~L   84 (266)
T COG1018           6 RRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDED-SLYRISVKREDGGGGSNWL   84 (266)
T ss_pred             EEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCC-ceEEEEEEEeCCCcccHHH
Confidence            46789999999999999999998876  49999999999997777899999999999753 6899999998  7889988


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          198 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE  277 (658)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (658)
                      ++.++.                                                                          
T Consensus        85 h~~lk~--------------------------------------------------------------------------   90 (266)
T COG1018          85 HDHLKV--------------------------------------------------------------------------   90 (266)
T ss_pred             HhcCCC--------------------------------------------------------------------------
Confidence            766532                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE
Q 006160          278 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA  357 (658)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  357 (658)
                                                                                                |+  ++
T Consensus        91 --------------------------------------------------------------------------Gd--~l   94 (266)
T COG1018          91 --------------------------------------------------------------------------GD--TL   94 (266)
T ss_pred             --------------------------------------------------------------------------CC--EE
Confidence                                                                                      13  36


Q ss_pred             EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHH
Q 006160          358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  427 (658)
Q Consensus       358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~  427 (658)
                      .|.+|.|.+..+....++++|+||||||||++||++++....      . .+|.|++++|+.+++.+.++
T Consensus        95 ~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R~~~~~af~de  157 (266)
T COG1018          95 EVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAARTPADLAFRDE  157 (266)
T ss_pred             EEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecCChhhcchhhH
Confidence            679999998665445558999999999999999999998755      2 57999999999999988775

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.81  E-value=1e-18  Score=179.91  Aligned_cols=190  Identities=18%  Similarity=0.254  Sum_probs=132.1

Q ss_pred             EEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhh
Q 006160          125 DVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILS  203 (658)
Q Consensus       125 ~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~  203 (658)
                      ++++++.+.++++.++++.+.. ..|+||||++|+++.  ..++|||||+|.+.+ ++.++|+||..|+.|+.|.+. ..
T Consensus         2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~--~~~~~pySi~s~~~~-~~~~~~~vk~~G~~t~~l~~l-~~   77 (248)
T cd06219           2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADE--KGERIPLTIADWDPE-KGTITIVVQVVGKSTRELATL-EE   77 (248)
T ss_pred             EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCC--CCCccceEeEEEcCC-CCEEEEEEEeCCchHHHHHhc-CC
Confidence            5778888999999999997653 589999999999864  235799999998753 479999999999999776322 10


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          204 KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQ  283 (658)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (658)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (248)
T cd06219          78 --------------------------------------------------------------------------------   77 (248)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEECc
Q 006160          284 GPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEGP  362 (658)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veGP  362 (658)
                                                                                          +.  ++ .++||
T Consensus        78 --------------------------------------------------------------------G~--~v~~i~gP   87 (248)
T cd06219          78 --------------------------------------------------------------------GD--KIHDVVGP   87 (248)
T ss_pred             --------------------------------------------------------------------CC--EeeeeecC
Confidence                                                                                01  36 59999


Q ss_pred             cCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCc
Q 006160          363 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLN  442 (658)
Q Consensus       363 yG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~  442 (658)
                      ||..... .++++++|||||+||||++++++++.+..        ++++|+|++|+.+++.+.+++. ++.     .   
T Consensus        88 ~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~~--------~~v~l~~~~r~~~~~~~~~el~-~l~-----~---  149 (248)
T cd06219          88 LGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEAG--------NRVITIIGARTKDLVILEDEFR-AVS-----D---  149 (248)
T ss_pred             CCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhhHHHHH-hhc-----C---
Confidence            9997543 45689999999999999999999987532        4799999999999986655443 321     1   


Q ss_pred             eEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160          443 LETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       443 l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w  490 (658)
                       ++ .+++++ .+....+ ...+.+.+..+...+...+.+|||+..+-
T Consensus       150 -~~-~~~~~~-~~~~~~g-~v~~~l~~~~~~~~~~~~vyiCGP~~m~~  193 (248)
T cd06219         150 -EL-IITTDD-GSYGEKG-FVTDPLKELIESGEKVDLVIAIGPPIMMK  193 (248)
T ss_pred             -eE-EEEeCC-CCCCccc-cchHHHHHHHhccCCccEEEEECCHHHHH
Confidence             11 223332 2211111 12222333332222345789999996643

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=99.81  E-value=1.7e-18  Score=185.18  Aligned_cols=211  Identities=12%  Similarity=0.072  Sum_probs=145.9

Q ss_pred             cceEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCC---CCCcceeEEeeeCCCCCCCeEEEEEEEc--Cch
Q 006160          121 RRTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVREL---SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  193 (658)
Q Consensus       121 ~~~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~i---s~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~  193 (658)
                      +..+++.+++.+++++.+++++.+.  .+.|+||||+.+.++..   ....+|+||++|.|.+ .+.++|+||+.  |.+
T Consensus        52 ~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~~G~~  130 (325)
T PTZ00274         52 YEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKKDGLM  130 (325)
T ss_pred             eEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcCCCcc
Confidence            3568899999999999999997654  58999999999887621   2346899999999964 47999999996  667


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          194 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP  273 (658)
Q Consensus       194 T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  273 (658)
                      |..|++ ++.                                                                      
T Consensus       131 S~~L~~-lk~----------------------------------------------------------------------  139 (325)
T PTZ00274        131 TNHLFG-MHV----------------------------------------------------------------------  139 (325)
T ss_pred             cHHHhc-CCC----------------------------------------------------------------------
Confidence            888763 211                                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT  353 (658)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (658)
                                                                                                    |+
T Consensus       140 ------------------------------------------------------------------------------Gd  141 (325)
T PTZ00274        140 ------------------------------------------------------------------------------GD  141 (325)
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          12


Q ss_pred             eeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160          354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  433 (658)
Q Consensus       354 ~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell  433 (658)
                        ++.|.||+|.........++++||||||||||+++++++++++..........+|+|+|++|+.+|+.+.+++ +++.
T Consensus       142 --~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL-~~La  218 (325)
T PTZ00274        142 --KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLF-DDLA  218 (325)
T ss_pred             --EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHH-HHHH
Confidence              4778999886533223457999999999999999999999875421101123589999999999998655443 3332


Q ss_pred             CCccCCC-CceEEEEEEcCCCC---CCCCcccccccccccccCCCC-CCceeEeecCCCc
Q 006160          434 CPFFSDK-LNLETFIYVTRETE---PPLEEGELHKTMSSSIYPVPS-GCAMSVLVGTGNN  488 (658)
Q Consensus       434 ~~~~~~~-~~l~I~iyVT~~~~---~~~~~~~~~~~~v~~~~P~~~-d~~~~~v~Gp~~~  488 (658)
                          ... .+++++..++++..   +....+.+.+.++.+..+.+. ....+.+|||+..
T Consensus       219 ----~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~M  274 (325)
T PTZ00274        219 ----RRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQL  274 (325)
T ss_pred             ----HhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHH
Confidence                122 25888888876432   212234444444344444332 2356899999955

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=99.81  E-value=2e-18  Score=183.43  Aligned_cols=129  Identities=17%  Similarity=0.148  Sum_probs=80.8

Q ss_pred             EEEEECccCCCccC-c-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160          356 TASVEGPYGHEVPY-H-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  433 (658)
Q Consensus       356 ~v~veGPyG~~~~~-~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell  433 (658)
                      ++.|.||+|.++.. . ...+++||||||+||||+++++++++....... ....++.|+|++|+.+|+.+.+++ +++.
T Consensus       137 ~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~-~~~~~v~L~~g~R~~~d~~~~deL-~~l~  214 (307)
T PLN03116        137 KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAF-KFGGLAWLFLGVANSDSLLYDDEF-ERYL  214 (307)
T ss_pred             EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccc-cCCCcEEEEEecCCcccchHHHHH-HHHH
Confidence            57899999987542 1 345789999999999999999999876532100 012579999999999998665544 3332


Q ss_pred             CCccCCC-CceEEEEEEcCCCCCCCCccccccccccccc----CCCCCCceeEeecCCCchH
Q 006160          434 CPFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSSIY----PVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       434 ~~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~----P~~~d~~~~~v~Gp~~~~w  490 (658)
                          .+. .+++++..++++...+.......+..+.+..    +...+...+.+|||++.+-
T Consensus       215 ----~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~~mv~  272 (307)
T PLN03116        215 ----KDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMP  272 (307)
T ss_pred             ----HhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCHHHHH
Confidence                222 2688888888765432111112222222111    1111346678999986543

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=99.80  E-value=2.6e-18  Score=182.01  Aligned_cols=204  Identities=19%  Similarity=0.268  Sum_probs=143.3

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCC----CCcceeEEeeeCCCCCCCeEEEEEEEc----
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLEGKYHSSVLIKVL----  190 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is----~~q~HPFTIaS~p~~~~~~lsl~IR~~----  190 (658)
                      +.+++++.+.+++++..++++.+.   .+.|+||||+.|+++..+    ....|+||++|.+.+ ++.++|+||..    
T Consensus        34 ~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~  112 (300)
T PTZ00319         34 QHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGV  112 (300)
T ss_pred             EEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCC
Confidence            467888999999999888887542   268999999999997432    246799999998864 48899999986    


Q ss_pred             -------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCC
Q 006160          191 -------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP  263 (658)
Q Consensus       191 -------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~  263 (658)
                             |..|+.|.+ ++                                                             
T Consensus       113 ~~~~~~~G~~S~~L~~-l~-------------------------------------------------------------  130 (300)
T PTZ00319        113 HPSFPNGGRLSQHLYH-MK-------------------------------------------------------------  130 (300)
T ss_pred             CCCCCCCCChhhhhhc-CC-------------------------------------------------------------
Confidence                   677766621 10                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 006160          264 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP  343 (658)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (658)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (300)
T PTZ00319        131 --------------------------------------------------------------------------------  130 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCeeEEEEECccCCCccCc---------------cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCc
Q 006160          344 PSRHPLLPPTKITASVEGPYGHEVPYH---------------LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPR  408 (658)
Q Consensus       344 ~~~~~~~~~~~~~v~veGPyG~~~~~~---------------~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~  408 (658)
                             +|+  ++.++||+|.+...-               ...++++|||||+||||+++++++++.+..     ..+
T Consensus       131 -------~Gd--~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~-----~~~  196 (300)
T PTZ00319        131 -------LGD--KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE-----DRT  196 (300)
T ss_pred             -------CCC--EEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC-----CCc
Confidence                   112  477999999763210               123589999999999999999999986431     135


Q ss_pred             eEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCC-CC-CCcccccccccccccCCCC------CCcee
Q 006160          409 NVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE-PP-LEEGELHKTMSSSIYPVPS------GCAMS  480 (658)
Q Consensus       409 kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~-~~-~~~~~~~~~~v~~~~P~~~------d~~~~  480 (658)
                      +++|+|++|+.+++.+.+++..  .    ....+++++..++++.. .+ ...+.+...++.+..|...      ++..+
T Consensus       197 ~i~liyg~r~~~dl~~~~eL~~--~----~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~v  270 (300)
T PTZ00319        197 KVFLVYANQTEDDILLRKELDE--A----AKDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMA  270 (300)
T ss_pred             eEEEEEecCCHHHhhHHHHHHH--H----hhCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEE
Confidence            7999999999999987776543  2    13446888888887432 11 2233444434444444322      34678


Q ss_pred             EeecCCCc
Q 006160          481 VLVGTGNN  488 (658)
Q Consensus       481 ~v~Gp~~~  488 (658)
                      .+|||+..
T Consensus       271 yiCGp~~m  278 (300)
T PTZ00319        271 LMCGPPPM  278 (300)
T ss_pred             EEECCHHH
Confidence            99999965

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=99.80  E-value=3.6e-18  Score=177.61  Aligned_cols=194  Identities=15%  Similarity=0.203  Sum_probs=133.9

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  202 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~  202 (658)
                      ..++++++.+++++++++++.+  ..|+||||+.|+++..+   .|||||++.+   ++.++|+||..|..|..|.+ ++
T Consensus         9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~   79 (263)
T PRK08221          9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK   79 (263)
T ss_pred             cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC
Confidence            4788899999999999999865  48999999999998543   3999999875   27899999999999987743 11


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                      .                                                                               
T Consensus        80 ~-------------------------------------------------------------------------------   80 (263)
T PRK08221         80 E-------------------------------------------------------------------------------   80 (263)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  362 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP  362 (658)
                                                                                           +.  ++.|+||
T Consensus        81 ---------------------------------------------------------------------Gd--~v~v~gP   89 (263)
T PRK08221         81 ---------------------------------------------------------------------GD--KLFLRGP   89 (263)
T ss_pred             ---------------------------------------------------------------------CC--EEEEECC
Confidence                                                                                 12  4779999


Q ss_pred             cCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160          363 YGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  441 (658)
Q Consensus       363 yG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~  441 (658)
                      ||..+. +....+++||||||+||||+++++++++++..     ..++++|+|++|+.+++.+.+++. ++.     +. 
T Consensus        90 ~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~-----~~~~v~L~~g~r~~~~l~~~~el~-~~~-----~~-  157 (263)
T PRK08221         90 YGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ-----EIKSLDLILGFKNPDDILFKEDLK-RWR-----EK-  157 (263)
T ss_pred             CCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhHHHHHH-HHh-----hc-
Confidence            998443 22346799999999999999999999976431     235899999999999986655443 332     21 


Q ss_pred             ceEEEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCch
Q 006160          442 NLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  489 (658)
Q Consensus       442 ~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~  489 (658)
                       +++++.+++....+ ...+.+... +.+......+...+.+|||+..+
T Consensus       158 -~~~~~~~~~~~~~~~~~~G~v~~~-l~~~~~~~~~~~~vylCGp~~mv  204 (263)
T PRK08221        158 -INLILTLDEGEEGYRGNVGLVTKY-IPELTLKDIDNMQVIVVGPPIMM  204 (263)
T ss_pred             -CcEEEEecCCCCCCccCccccChh-hHhccCCCcCCeEEEEECCHHHH
Confidence             23444455543322 122222211 11111111135678999999653

>PRK05802 hypothetical protein; Provisional

Probab=99.80  E-value=3.7e-18  Score=182.38  Aligned_cols=75  Identities=20%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR  198 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~  198 (658)
                      ..++++.+.+++++++++++.|..   ..++||||++|+++..+.+..|||||++++.+ ++.++|+||..|.+|+.|.
T Consensus        66 ~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~G~~T~~L~  143 (320)
T PRK05802         66 ECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIRGVKTKKIA  143 (320)
T ss_pred             eEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEecChhHHHHh
Confidence            578889999999999999987753   35799999999998655677899999999864 4899999999999999884

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=99.79  E-value=9.5e-18  Score=176.44  Aligned_cols=209  Identities=17%  Similarity=0.166  Sum_probs=139.7

Q ss_pred             eEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCCC-----CCcceeEEeeeCCCC---CCCeEEEEEEE
Q 006160          123 TVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS-----WLQWHPFSVSSSPLE---GKYHSSVLIKV  189 (658)
Q Consensus       123 ~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is-----~~q~HPFTIaS~p~~---~~~~lsl~IR~  189 (658)
                      .++|++++.+.     +++++++++.+..+.|+||||+.|.++...     ....|+|||+|.|.+   +.+.++|+||.
T Consensus        10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~   89 (286)
T cd06208          10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKR   89 (286)
T ss_pred             EEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEE
Confidence            57788888886     689999998877789999999999876422     234799999998853   23689999999


Q ss_pred             c------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCC
Q 006160          190 L------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG  257 (658)
Q Consensus       190 ~------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~  257 (658)
                      .            |..|+.|.+. +                                                       
T Consensus        90 ~~~~~~~~~~~~~G~~S~~L~~l-~-------------------------------------------------------  113 (286)
T cd06208          90 LVYTDPETDETKKGVCSNYLCDL-K-------------------------------------------------------  113 (286)
T ss_pred             EEEecCCCCceeccchHHHHhhC-C-------------------------------------------------------
Confidence            7            5566655431 0                                                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCC
Q 006160          258 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGS  337 (658)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (658)
                                                                                                      
T Consensus       114 --------------------------------------------------------------------------------  113 (286)
T cd06208         114 --------------------------------------------------------------------------------  113 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCeeEEEEECccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 006160          338 PPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV  416 (658)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~v  416 (658)
                                   +|+  +|.|.||+|.++... ...++++|||||+||||+++++++++.+..... ...+++.|+|++
T Consensus       114 -------------~Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~  177 (286)
T cd06208         114 -------------PGD--DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADY-KFTGLAWLFFGV  177 (286)
T ss_pred             -------------CCC--EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccc-CCCCCEEEEEEe
Confidence                         012  477899999875432 235689999999999999999999987531100 123579999999


Q ss_pred             ccCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCCCCCCCcccccccccccccC-----CCCCCceeEeecCCCc
Q 006160          417 KKSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSSIYP-----VPSGCAMSVLVGTGNN  488 (658)
Q Consensus       417 R~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P-----~~~d~~~~~v~Gp~~~  488 (658)
                      |+.+++.+.+++ +++.    .+. .+++++..++++...+.......+..+.....     -..+.....+|||++.
T Consensus       178 r~~~d~~~~~el-~~l~----~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~m  250 (286)
T cd06208         178 PNSDSLLYDDEL-EKYP----KQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLKGM  250 (286)
T ss_pred             cCccchhHHHHH-HHHH----HhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCchH
Confidence            999998655443 3332    122 36888888887654221111111221211100     0113357889999874

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=99.79  E-value=4.2e-18  Score=176.97  Aligned_cols=193  Identities=15%  Similarity=0.185  Sum_probs=131.4

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  202 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~  202 (658)
                      .+++++....+++++.++++.+  +.|+||||+.|.++...   .||||+++.+   ++.++|+||..|+.|..|.+ ++
T Consensus         7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~~---~~~l~~~Vk~~G~~S~~L~~-l~   77 (261)
T TIGR02911         7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGIG---EGYIDLTIRRVGKVTDEVFT-LK   77 (261)
T ss_pred             eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCCC---CCeEEEEEEeCchhhHHHHc-CC
Confidence            4678888888888999998764  68999999999998633   4899998853   37899999999999987742 10


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                      .                                                                               
T Consensus        78 ~-------------------------------------------------------------------------------   78 (261)
T TIGR02911        78 E-------------------------------------------------------------------------------   78 (261)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  362 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP  362 (658)
                                                                                           +.  ++.|+||
T Consensus        79 ---------------------------------------------------------------------Gd--~v~i~gP   87 (261)
T TIGR02911        79 ---------------------------------------------------------------------GD--NLFLRGP   87 (261)
T ss_pred             ---------------------------------------------------------------------CC--EEEEecC
Confidence                                                                                 12  4779999


Q ss_pred             cCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160          363 YGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  441 (658)
Q Consensus       363 yG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~  441 (658)
                      ||..+. .....++++|||||+||||+++++++++++.+     ..++|+|+|++|+.+++.+.+++. ++.     ...
T Consensus        88 ~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~-----~~~~v~L~~~~r~~~~~~~~~eL~-~l~-----~~~  156 (261)
T TIGR02911        88 YGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK-----EIKSLNLILGFKTPDDILFKEDIA-EWK-----GNI  156 (261)
T ss_pred             CCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhHHHHHH-HHH-----hcC
Confidence            998543 22346799999999999999999999876431     135899999999999996655543 332     222


Q ss_pred             ceEEEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          442 NLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       442 ~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                        +++..+.+..+.+ ...+.+.. .+.+......+...+.+|||++.
T Consensus       157 --~~~~~~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~v~lCGp~~m  201 (261)
T TIGR02911       157 --NLTLTLDEAEEDYKGNIGLVTK-YIPELTLKDIEEVQAIVVGPPIM  201 (261)
T ss_pred             --cEEEEEcCCCCCCcCCeeccCH-hHHhccCCCccceEEEEECCHHH
Confidence              3444444332221 22222222 12221111123456899999965

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.78  E-value=1.2e-17  Score=172.86  Aligned_cols=191  Identities=22%  Similarity=0.321  Sum_probs=139.7

Q ss_pred             EEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEE--cCchHHHHHHH
Q 006160          124 VDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV--LGEWTENLRDY  200 (658)
Q Consensus       124 ~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~--~G~~T~~L~~~  200 (658)
                      ++|.+++.+++++++++++.+.. +.++||||+.|++|.   ...+|||++|.+.+ ++.++|+|+.  .|..|+.+.++
T Consensus        10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~-~g~~~l~i~~~~~G~~T~~i~~~   85 (252)
T COG0543          10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDD-KGELELHIRVYEVGKVTKYIFGL   85 (252)
T ss_pred             cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCc-CCcEEEEEEEEeCChHHHHHhhc
Confidence            68999999999998888887654 689999999999998   57799999999974 4655655555  79999988665


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                         + +                                                                          
T Consensus        86 ---k-~--------------------------------------------------------------------------   87 (252)
T COG0543          86 ---K-E--------------------------------------------------------------------------   87 (252)
T ss_pred             ---c-C--------------------------------------------------------------------------
Confidence               1 0                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                             ++  .+.|+
T Consensus        88 -----------------------------------------------------------------------gd--~i~v~   94 (252)
T COG0543          88 -----------------------------------------------------------------------GD--KIRVR   94 (252)
T ss_pred             -----------------------------------------------------------------------CC--EEEEE
Confidence                                                                                   02  37899


Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      ||||+.+......+.+++||||+|++|++++++++.++. .     ..+|+++|++|+.+++.+.+++. +.-     ..
T Consensus        95 GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~-----~~~V~~~~G~~~~~dl~~~~el~-~~~-----~~  162 (252)
T COG0543          95 GPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D-----ANKVTLLYGARTAKDLLLLDELE-ELA-----EK  162 (252)
T ss_pred             cCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-C-----CceEEEEEeccChhhcccHHHHH-Hhh-----cC
Confidence            999998776434555999999999999999999998754 2     36899999999999997666553 221     11


Q ss_pred             CceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          441 LNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       441 ~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                         +++..++  +++.+..+.+.+..+..+.+.  +.....+|||+..
T Consensus       163 ---~~~~~~~--~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~M  203 (252)
T COG0543         163 ---EVHPVTD--DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPAM  203 (252)
T ss_pred             ---cEEEEEC--CCCCccCcceeHHHHhhhccc--cCCEEEEECCHHH
Confidence               4444443  333333444434444444333  5678899999944

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.77  E-value=5.6e-18  Score=176.25  Aligned_cols=205  Identities=19%  Similarity=0.240  Sum_probs=164.3

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  196 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~  196 (658)
                      ...++.+.+.++.|+.+.++..|.   .+....|||+++.+|-.+....+|||..|.+.+ .+.++|.||..  |.+|+.
T Consensus        52 ~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~~G~mS~~  130 (286)
T KOG0534|consen   52 YPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYPKGKMSQH  130 (286)
T ss_pred             EEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEeccCCcccHH
Confidence            467788888898888777777663   378999999999999888889999999999875 68999999997  888887


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  276 (658)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (658)
                      |.++-                                                                           
T Consensus       131 l~~Lk---------------------------------------------------------------------------  135 (286)
T KOG0534|consen  131 LDSLK---------------------------------------------------------------------------  135 (286)
T ss_pred             HhcCC---------------------------------------------------------------------------
Confidence            73320                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160          277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  356 (658)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (658)
                                                                                                .|+  +
T Consensus       136 --------------------------------------------------------------------------iGd--~  139 (286)
T KOG0534|consen  136 --------------------------------------------------------------------------IGD--T  139 (286)
T ss_pred             --------------------------------------------------------------------------CCC--E
Confidence                                                                                      012  5


Q ss_pred             EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160          357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  436 (658)
Q Consensus       357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~  436 (658)
                      |.++||.|+....-..++++.|||||+||||+++++++++.+.++     ..+|.|++++++.+|+. +++.++++.   
T Consensus       140 ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d-----~tki~lly~N~te~DIL-lr~eL~~la---  210 (286)
T KOG0534|consen  140 VEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED-----TTKISLLYANKTEDDIL-LREELEELA---  210 (286)
T ss_pred             EEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC-----CcEEEEEEecCCccccc-hHHHHHHHH---
Confidence            889999998654445689999999999999999999999987642     56899999999999994 444444432   


Q ss_pred             cCCCC-ceEEEEEEcCCCCC-CCCcccccccccccccCCCCC-CceeEeecCCCc
Q 006160          437 FSDKL-NLETFIYVTRETEP-PLEEGELHKTMSSSIYPVPSG-CAMSVLVGTGNN  488 (658)
Q Consensus       437 ~~~~~-~l~I~iyVT~~~~~-~~~~~~~~~~~v~~~~P~~~d-~~~~~v~Gp~~~  488 (658)
                       .++. ++.++.+|++..+. ....+.+.++++....|.+.+ ...+.+|||+..
T Consensus       211 -~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m  264 (286)
T KOG0534|consen  211 -SKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPM  264 (286)
T ss_pred             -hhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHH
Confidence             3444 89999999998844 446677788888889998888 699999999954

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=99.76  E-value=1.8e-17  Score=170.58  Aligned_cols=86  Identities=8%  Similarity=0.044  Sum_probs=62.1

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHHHHhccC
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC  434 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~l~ell~  434 (658)
                      +|.|.||.|..+......+++||||||+||||+++++++++.+.       .+++.|++++|+.+ ++.+.+++ ++.. 
T Consensus        92 ~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~~~el-~~~~-  162 (245)
T cd06200          92 SVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFCREEL-EAWQ-  162 (245)
T ss_pred             EEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhHHHHH-HHHH-
Confidence            57799988765543234578999999999999999999987643       24689999999984 77555544 3332 


Q ss_pred             CccCCCCceEEEEEEcCCC
Q 006160          435 PFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~~  453 (658)
                         .+...+++++.+++++
T Consensus       163 ---~~~~~~~~~~~~s~~~  178 (245)
T cd06200         163 ---AAGHLARLDLAFSRDQ  178 (245)
T ss_pred             ---HCCCcceEEEEEccCC
Confidence               2344577777888764

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>PRK05713 hypothetical protein; Provisional

Probab=99.76  E-value=8.5e-18  Score=178.91  Aligned_cols=189  Identities=19%  Similarity=0.197  Sum_probs=133.2

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      ..+|++++.+.+++++++++.+..+.|+||||+.|.++.   ..+|||||+|.|.+ .+.++|+||.+  |.+|..|. .
T Consensus        93 ~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~-~~~l~~~I~~~~~G~~s~~l~-~  167 (312)
T PRK05713         93 PARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGE-DPFLEFHIDCSRPGAFCDAAR-Q  167 (312)
T ss_pred             CeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCC-CCeEEEEEEEcCCCccchhhh-c
Confidence            578888999999999999987667899999999999863   25799999999864 47899999864  77887652 1


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      ++                                                                              
T Consensus       168 l~------------------------------------------------------------------------------  169 (312)
T PRK05713        168 LQ------------------------------------------------------------------------------  169 (312)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                            +|+  +|.+.
T Consensus       170 ----------------------------------------------------------------------~Gd--~v~l~  177 (312)
T PRK05713        170 ----------------------------------------------------------------------VGD--LLRLG  177 (312)
T ss_pred             ----------------------------------------------------------------------CCC--EEEEc
Confidence                                                                                  012  46689


Q ss_pred             CccCCCcc-Ccc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160          361 GPYGHEVP-YHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  438 (658)
Q Consensus       361 GPyG~~~~-~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~  438 (658)
                      ||+|..+. ... ..+++||||||+||||+++++++++++..      .++|+|+|++|+.+++.+.+++ +++.    .
T Consensus       178 ~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~------~~~v~l~~g~r~~~d~~~~~el-~~l~----~  246 (312)
T PRK05713        178 ELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH------QGPIRLLHLARDSAGHYLAEPL-AALA----G  246 (312)
T ss_pred             cCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC------CCcEEEEEEcCchHHhhhHHHH-HHHH----H
Confidence            99985432 112 45789999999999999999999876541      3579999999999998665544 3332    2


Q ss_pred             CCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          439 DKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       439 ~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      +..+++++..+++...          +.+....+. .+...+.+|||+..
T Consensus       247 ~~~~~~~~~~~~~~~~----------~~l~~~~~~-~~~~~vyiCGp~~m  285 (312)
T PRK05713        247 RHPQLSVELVTAAQLP----------AALAELRLV-SRQTMALLCGSPAS  285 (312)
T ss_pred             HCCCcEEEEEECcchh----------hhhhhccCC-CCCeEEEEeCCHHH
Confidence            3346777765553211          111111111 13356789999955

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.76  E-value=2.9e-20  Score=167.29  Aligned_cols=80  Identities=31%  Similarity=0.670  Sum_probs=0.0

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD  199 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~  199 (658)
                      ++++++++.+++++++|+++++.. ++|+||||+||++|.++  .+|||||||+|++.+  +.++|+||++|+||++|++
T Consensus         3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~--~~i~l~ik~~g~~T~~L~~   80 (105)
T PF08022_consen    3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPED--NSITLIIKARGGWTKRLYE   80 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCC--CEEEEEEEeCCCchHHHHH
Confidence            457788899999999999999986 99999999999999999  569999999999973  8999999999999999999


Q ss_pred             HHhhc
Q 006160          200 YILSK  204 (658)
Q Consensus       200 ~~~~~  204 (658)
                      .+.+.
T Consensus        81 ~~~~~   85 (105)
T PF08022_consen   81 HLSES   85 (105)
T ss_dssp             -----
T ss_pred             HHhhh
Confidence            87653

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.76  E-value=2.7e-17  Score=171.49  Aligned_cols=161  Identities=17%  Similarity=0.134  Sum_probs=119.1

Q ss_pred             CceEEEEEeCC--CCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc-----------CchHHHHHHH
Q 006160          134 CGTVELVLSKP--ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-----------GEWTENLRDY  200 (658)
Q Consensus       134 ~~v~~l~i~~p--~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~-----------G~~T~~L~~~  200 (658)
                      .+++++++..+  ..+.|.||||+.|.++.  ....|||||+|.|+++.+.++|+||..           |..|+.|.++
T Consensus        15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~l   92 (267)
T cd06182          15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGL   92 (267)
T ss_pred             CceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhC
Confidence            56999999988  56899999999999874  556899999999865458999999987           6677766431


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                       +                                                                              
T Consensus        93 -k------------------------------------------------------------------------------   93 (267)
T cd06182          93 -Q------------------------------------------------------------------------------   93 (267)
T ss_pred             -C------------------------------------------------------------------------------
Confidence             0                                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                            +++  .+.+.
T Consensus        94 ----------------------------------------------------------------------~Gd--~v~v~  101 (267)
T cd06182          94 ----------------------------------------------------------------------LGA--KVTVF  101 (267)
T ss_pred             ----------------------------------------------------------------------CCC--EEEEE
Confidence                                                                                  012  47899


Q ss_pred             CccC-CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccCCccC
Q 006160          361 GPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICPFFS  438 (658)
Q Consensus       361 GPyG-~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~~~~~  438 (658)
                      ||+| .+.......+++||||||+||||+++++++++......  ....++.|+|++|+. +++.+.+++ .++.    .
T Consensus       102 ~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~--~~~~~v~l~~g~r~~~~d~~~~del-~~~~----~  174 (267)
T cd06182         102 IRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG--KARGPAWLFFGCRNFASDYLYREEL-QEAL----K  174 (267)
T ss_pred             EecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc--ccCCCEEEEEeCCCCcccccHHHHH-HHHH----h
Confidence            9999 44332233679999999999999999999998642111  123579999999999 888665544 3332    2


Q ss_pred             CCCceEEEEEEcCCCC
Q 006160          439 DKLNLETFIYVTRETE  454 (658)
Q Consensus       439 ~~~~l~I~iyVT~~~~  454 (658)
                      ...+++++..++++..
T Consensus       175 ~~~~~~~~~~~S~~~~  190 (267)
T cd06182         175 DGALTRLDVAFSREQA  190 (267)
T ss_pred             CCCcceEEEEEccCCC
Confidence            3456888888887543

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>PLN02252 nitrate reductase [NADPH]

Probab=99.75  E-value=3.1e-17  Score=194.72  Aligned_cols=207  Identities=19%  Similarity=0.250  Sum_probs=148.3

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--------
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--------  190 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--------  190 (658)
                      ..+++++.+.++.++.+++|..+..   +.+.||||++|+++..+....|+||++|.+.+ .+.++|+||.+        
T Consensus       635 ~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~  713 (888)
T PLN02252        635 IPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKF  713 (888)
T ss_pred             EEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCcc
Confidence            4678899999999999999987643   57899999999997555667899999999864 47999999986        


Q ss_pred             ---CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160          191 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG  267 (658)
Q Consensus       191 ---G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~  267 (658)
                         |.+|+.|.+ +                                                                  
T Consensus       714 p~gG~~S~~L~~-L------------------------------------------------------------------  726 (888)
T PLN02252        714 PNGGLMSQYLDS-L------------------------------------------------------------------  726 (888)
T ss_pred             CCCCchhhHHhc-C------------------------------------------------------------------
Confidence               556655521 1                                                                  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (658)
                                                                                                      
T Consensus       727 --------------------------------------------------------------------------------  726 (888)
T PLN02252        727 --------------------------------------------------------------------------------  726 (888)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEECccCCCccC----------ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeec
Q 006160          348 PLLPPTKITASVEGPYGHEVPY----------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK  417 (658)
Q Consensus       348 ~~~~~~~~~v~veGPyG~~~~~----------~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR  417 (658)
                        .+|.  +|.|+||+|.+...          ....++++|||||+||||++++|++++++.+     ..++|+|+|++|
T Consensus       727 --~vGd--~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~-----d~t~i~Liyg~R  797 (888)
T PLN02252        727 --PIGD--TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE-----DKTEMSLVYANR  797 (888)
T ss_pred             --CCCC--EEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC-----CCCcEEEEEEEC
Confidence              0112  47799999975211          1235799999999999999999999987532     235799999999


Q ss_pred             cCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCC--CCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160          418 KSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRET--EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       418 ~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~--~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w  490 (658)
                      +.+|+.+.+++ +++.    .+. .+++++..+|++.  .+....+.+...++....+...+...+.+|||+.-+-
T Consensus       798 t~~Dil~~eEL-~~la----~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vyiCGPp~Mi~  868 (888)
T PLN02252        798 TEDDILLREEL-DRWA----AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLALMCGPPPMIE  868 (888)
T ss_pred             CHHHhhHHHHH-HHHH----HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEEEeCCHHHHH
Confidence            99998665544 3332    122 4688888888753  2222334444444555555544567899999996543

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=99.75  E-value=6.2e-17  Score=175.41  Aligned_cols=126  Identities=18%  Similarity=0.211  Sum_probs=81.0

Q ss_pred             EEEEECccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160          356 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  434 (658)
Q Consensus       356 ~v~veGPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~  434 (658)
                      +|.|.||+|..+... ...+++||||||+||||+++++++++....... ....++.|+|++|+.+|+.+.+++. ++. 
T Consensus       197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~-~~~~~v~Lf~G~R~~~dlly~dELe-~l~-  273 (367)
T PLN03115        197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPTSSSLLYKEEFE-KMK-  273 (367)
T ss_pred             EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccc-cCCCcEEEEEccCCHHHhhHHHHHH-HHH-
Confidence            477899999875321 344689999999999999999998765432111 0135799999999999886665543 322 


Q ss_pred             CccCCC-CceEEEEEEcCCCCCCCCcccccccccccccCC-----CCCCceeEeecCCC
Q 006160          435 PFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSSIYPV-----PSGCAMSVLVGTGN  487 (658)
Q Consensus       435 ~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~-----~~d~~~~~v~Gp~~  487 (658)
                         .+. .+++++..++++.+.+.+.....+..+.+....     ..+...+.+|||.+
T Consensus       274 ---~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~~  329 (367)
T PLN03115        274 ---EKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKG  329 (367)
T ss_pred             ---HhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCHH
Confidence               222 378999999987643322222223322221110     12457889999974

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=99.74  E-value=8.7e-17  Score=177.35  Aligned_cols=88  Identities=16%  Similarity=0.318  Sum_probs=63.4

Q ss_pred             EEEEECccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160          356 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  434 (658)
Q Consensus       356 ~v~veGPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~  434 (658)
                      +|.|.||||..+..- ...+++||||||+||||++++++++......+   ...+++|+|++|+.+++.+++++. ++. 
T Consensus       249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~---~~~~v~L~~G~Rt~~dl~y~~eL~-~l~-  323 (411)
T TIGR03224       249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG---EGGKLMLFFGARTKEELPYFGPLQ-KLP-  323 (411)
T ss_pred             EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC---CCCCEEEEEecCccccchHHHHHH-HHH-
Confidence            578999999865421 23468999999999999999999987643211   236899999999999998776653 322 


Q ss_pred             CccCCCCceEEEEEEcCCC
Q 006160          435 PFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~~  453 (658)
                         ..  .+++++.++++.
T Consensus       324 ---~~--~~~~~~~~sr~~  337 (411)
T TIGR03224       324 ---KD--FIDINFAFSRTP  337 (411)
T ss_pred             ---hc--CceEEEEeccCC
Confidence               12  245666666654

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.70  E-value=3e-16  Score=185.41  Aligned_cols=191  Identities=16%  Similarity=0.222  Sum_probs=135.6

Q ss_pred             EEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160          124 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  202 (658)
Q Consensus       124 ~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~  202 (658)
                      +++++.+.++++++.+++..|. ...++||||++|+++..+  ++|||||+|.+.+ ++.++|+||..|.+|+.|.++ .
T Consensus         2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~-~g~i~~~vk~vG~~T~~L~~l-~   77 (752)
T PRK12778          2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPE-KGTITLVIQEVGLSTTKLCEL-N   77 (752)
T ss_pred             CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCC-CCEEEEEEEEcCchHHHHhcC-C
Confidence            4678888899999999998765 357999999999997533  4799999999864 489999999999999988532 0


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                      .                                                                               
T Consensus        78 ~-------------------------------------------------------------------------------   78 (752)
T PRK12778         78 E-------------------------------------------------------------------------------   78 (752)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEEC
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG  361 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veG  361 (658)
                                                                                           ++  ++ .|.|
T Consensus        79 ---------------------------------------------------------------------Gd--~v~~v~G   87 (752)
T PRK12778         79 ---------------------------------------------------------------------GD--YITDVVG   87 (752)
T ss_pred             ---------------------------------------------------------------------CC--EeCeEeC
Confidence                                                                                 12  46 6999


Q ss_pred             ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160          362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  441 (658)
Q Consensus       362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~  441 (658)
                      |||+++.. ...++++|||||+||||+++++++++++.        .+|+++|++|+.+++.+.+++. ++.     .  
T Consensus        88 P~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~~l~~~~el~-~~~-----~--  150 (752)
T PRK12778         88 PLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAG--------NRVITILGGRSKELIILEDEMR-ESS-----D--  150 (752)
T ss_pred             CCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCC--------CeEEEEeccCCHHHhhhHHHHH-hhc-----C--
Confidence            99998654 34579999999999999999999997643        3799999999999997665553 221     1  


Q ss_pred             ceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160          442 NLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       442 ~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w  490 (658)
                        ++  +++.++.+....+. .+..+....+...+...+.+|||+.-+-
T Consensus       151 --~~--~~~t~dg~~g~~G~-v~~~l~~~~~~~~~~~~vy~CGP~~M~~  194 (752)
T PRK12778        151 --EV--IIMTDDGSYGRKGL-VTDGLEEVIKRETKVDKVFAIGPAIMMK  194 (752)
T ss_pred             --eE--EEEECCCCCCCccc-HHHHHHHHhhcCCCCCEEEEECCHHHHH
Confidence              12  22223332222222 2223333333222234689999996643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.69  E-value=1.1e-15  Score=183.41  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL  197 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L  197 (658)
                      ...+|++++.++++++.+++..|.. ..|+||||+.|.++..+  ++|||||++.+.+ +++++|+||..|..|+.|
T Consensus       649 ~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~-~g~i~l~Vk~vG~~T~~L  722 (944)
T PRK12779        649 IPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAE-KGTIDLVVQGMGTSSLEI  722 (944)
T ss_pred             eEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCC-CCEEEEEEEeeccHHHHH
Confidence            3578889999999999999987753 57999999999986433  4699999998753 488999999999888766

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.69  E-value=1.3e-15  Score=184.16  Aligned_cols=143  Identities=16%  Similarity=0.216  Sum_probs=114.6

Q ss_pred             EEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160          124 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  202 (658)
Q Consensus       124 ~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~  202 (658)
                      .+|++.+.+..+++.+++..|. ...|+|||||.|+++..  .+++||||++.+.+ .++++|+||..|..|+.|++.+.
T Consensus         2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~-~g~i~l~vk~vG~~T~~L~~~lk   78 (1006)
T PRK12775          2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRK-KGTITMVVQALGKTTREMMTKFK   78 (1006)
T ss_pred             cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCC-CCEEEEEEEecCcHHHHHHhcCC
Confidence            4678888999999999998875 46899999999998753  24799999998753 48999999999999999865431


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  282 (658)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (658)
                      .                                                                               
T Consensus        79 ~-------------------------------------------------------------------------------   79 (1006)
T PRK12775         79 A-------------------------------------------------------------------------------   79 (1006)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEEC
Q 006160          283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG  361 (658)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veG  361 (658)
                                                                                           |+  .+ .+.|
T Consensus        80 ---------------------------------------------------------------------Gd--~l~~v~G   88 (1006)
T PRK12775         80 ---------------------------------------------------------------------GD--TFEDFVG   88 (1006)
T ss_pred             ---------------------------------------------------------------------CC--EEeeeec
Confidence                                                                                 12  24 6999


Q ss_pred             ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      |||.++.. ..++++||||||+||||++++++++.+..        .+|+++|+.|+.+++.+.+++
T Consensus        89 PlG~~~~~-~~~~~vllVaGGiGIAPl~s~~r~l~~~g--------~~v~li~g~R~~~~l~~~del  146 (1006)
T PRK12775         89 PLGLPQHI-DKAGHVVLVGGGLGVAPVYPQLRAFKEAG--------ARTTGIIGFRNKDLVFWEDKF  146 (1006)
T ss_pred             CCCCCCCC-CCCCeEEEEEEhHHHHHHHHHHHHHHhCC--------CcEEEEEeCCChHHcccHHHH
Confidence            99987653 34679999999999999999999986543        369999999999887665544

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=99.67  E-value=2e-15  Score=159.26  Aligned_cols=74  Identities=11%  Similarity=0.024  Sum_probs=59.3

Q ss_pred             ceEEEEEEEEec----CceEEEEEeCCC-------CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEE-
Q 006160          122 RTVDVLSASCLP----CGTVELVLSKPA-------NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV-  189 (658)
Q Consensus       122 ~~~~v~sv~~l~----~~v~~l~i~~p~-------~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~-  189 (658)
                      ...++++.+.++    .++..++++.+.       ...|.||||+.|..++  ....|||||+|.+.+  +.++|+||. 
T Consensus        46 ~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g--~~~~R~YSias~p~~--g~l~l~Vk~~  121 (289)
T cd06201          46 KALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG--SDVPRFYSLASSSSD--GFLEICVRKH  121 (289)
T ss_pred             cceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC--CCCCceEecCCCCCC--CeEEEEEEeC
Confidence            467888888887    589999998765       4679999999998653  345699999999853  799999998 


Q ss_pred             -cCchHHHHHH
Q 006160          190 -LGEWTENLRD  199 (658)
Q Consensus       190 -~G~~T~~L~~  199 (658)
                       .|..|+.|.+
T Consensus       122 ~~G~~S~~L~~  132 (289)
T cd06201         122 PGGLCSGYLHG  132 (289)
T ss_pred             CCccchhhHhh
Confidence             5888888754

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.60  E-value=3e-14  Score=175.23  Aligned_cols=206  Identities=16%  Similarity=0.149  Sum_probs=141.3

Q ss_pred             eEEEEEEE---EecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc-CchHH
Q 006160          123 TVDVLSAS---CLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-GEWTE  195 (658)
Q Consensus       123 ~~~v~sv~---~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~-G~~T~  195 (658)
                      ++++.+++   .+..++..++|..|..   +.|.|||||.|+++..+....++||++|.|++ .+.++|+||.. |.+|+
T Consensus       916 ~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~~~G~~S~  994 (1167)
T PTZ00306        916 TVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARGDKGTLKE  994 (1167)
T ss_pred             EEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEcCCChhHH
Confidence            56666665   3467877888876643   57999999999986434445799999999964 47899999984 88888


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          196 NLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL  275 (658)
Q Consensus       196 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (658)
                      .|.+ +..                                                                        
T Consensus       995 ~L~~-l~~------------------------------------------------------------------------ 1001 (1167)
T PTZ00306        995 WISA-LRP------------------------------------------------------------------------ 1001 (1167)
T ss_pred             HHhh-CCC------------------------------------------------------------------------
Confidence            8732 110                                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCee
Q 006160          276 QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI  355 (658)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (658)
                                                                                                  ++  
T Consensus      1002 ----------------------------------------------------------------------------Gd-- 1003 (1167)
T PTZ00306       1002 ----------------------------------------------------------------------------GD-- 1003 (1167)
T ss_pred             ----------------------------------------------------------------------------CC--
Confidence                                                                                        12  


Q ss_pred             EEEEECccCCC---------cc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhH
Q 006160          356 TASVEGPYGHE---------VP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL  425 (658)
Q Consensus       356 ~v~veGPyG~~---------~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l  425 (658)
                      +|.|.||+|..         +. .....++++|||||+||||+++++++++++....   ..++|+|+|++|+.+++.+.
T Consensus      1004 ~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~---~~~~i~Llyg~r~~~dl~~~ 1080 (1167)
T PTZ00306       1004 SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVD---SIESIRLIYAAEDVSELTYR 1080 (1167)
T ss_pred             EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccC---CCceEEEEEEeCCHHHhhHH
Confidence            46678888731         11 1134578999999999999999999998643101   13589999999999999765


Q ss_pred             HHHHHhccCCccCCC-CceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160          426 SNFYKESICPFFSDK-LNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       426 ~~~l~ell~~~~~~~-~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      +++ .++.    .+. .+++++..++++.+.+. ..+.+...++.++.+.+.+.....+|||+..
T Consensus      1081 ~eL-~~l~----~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306       1081 ELL-ESYR----KENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVM 1140 (1167)
T ss_pred             HHH-HHHH----HHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHH
Confidence            554 3332    122 35888888887543222 2343444445566555555677899999854

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.59  E-value=2.8e-14  Score=145.86  Aligned_cols=71  Identities=11%  Similarity=-0.018  Sum_probs=57.2

Q ss_pred             EEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCC-------------------CCcceeEEeeeCCCCCCCeE
Q 006160          126 VLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS-------------------WLQWHPFSVSSSPLEGKYHS  183 (658)
Q Consensus       126 v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is-------------------~~q~HPFTIaS~p~~~~~~l  183 (658)
                      |++++.+++++++|+++.+..   ..|.||||+.|.++..+                   ...+|+||+++.+.+ .+++
T Consensus         1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l   79 (235)
T cd06193           1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGEL   79 (235)
T ss_pred             CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEE
Confidence            356778899999999988764   68899999999998543                   567899999998753 4899


Q ss_pred             EEEEEEc---CchHHHH
Q 006160          184 SVLIKVL---GEWTENL  197 (658)
Q Consensus       184 sl~IR~~---G~~T~~L  197 (658)
                      +|.|+..   |..|+.|
T Consensus        80 ~~~v~~~~~~G~~s~~l   96 (235)
T cd06193          80 DIDFVLHGDEGPASRWA   96 (235)
T ss_pred             EEEEEeCCCCCchHHHH
Confidence            9999887   5567766

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.38  E-value=9.5e-13  Score=134.25  Aligned_cols=155  Identities=16%  Similarity=0.290  Sum_probs=115.8

Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHH
Q 006160          316 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDI  395 (658)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~l  395 (658)
                      .++-+.+.++++|||..+..+...+++..+++  .|++  +|.|.||||.++.. .....+||++||.|.+|+.|.+-|+
T Consensus       223 ~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sL--KpGD--KvtisGPfGEfFaK-dtdaemvFigGGAGmapmRSHIfDq  297 (410)
T COG2871         223 KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSL--KPGD--KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQ  297 (410)
T ss_pred             cCeEEEEEEeccCCCCCCCCCccceeeeEEee--cCCC--eEEEeccchhhhhc-cCCCceEEEecCcCcCchHHHHHHH
Confidence            46667788889999999888888888888876  7888  47899999998754 4567899999999999999999999


Q ss_pred             HHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcc---ccccccc---cc
Q 006160          396 LHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEG---ELHKTMS---SS  469 (658)
Q Consensus       396 l~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~---~~~~~~v---~~  469 (658)
                      +.+..+     .|++.|.|+.|+.++.-+.+++ +++    ..+.+++.-|+.++.+..++.+.+   .+...+.   .+
T Consensus       298 L~rlhS-----kRkis~WYGARS~rE~fY~Ed~-d~L----~ae~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk  367 (410)
T COG2871         298 LKRLHS-----KRKISFWYGARSLREMFYQEDF-DQL----QAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLK  367 (410)
T ss_pred             HHhhcc-----cceeeeeeccchHHHhHHHHHH-HHH----HhhCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhhh
Confidence            987643     4799999999999988555443 233    357789999999998765433322   2222221   22


Q ss_pred             ccCCCCCCceeEeecCC
Q 006160          470 IYPVPSGCAMSVLVGTG  486 (658)
Q Consensus       470 ~~P~~~d~~~~~v~Gp~  486 (658)
                      -.|.| ++..+-+|||+
T Consensus       368 ~h~aP-EDceyYmCGPp  383 (410)
T COG2871         368 DHEAP-EDCEYYMCGPP  383 (410)
T ss_pred             cCCCc-hheeEEeeCcc
Confidence            23444 45677899998

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.29  E-value=8.7e-12  Score=135.60  Aligned_cols=118  Identities=14%  Similarity=0.061  Sum_probs=72.1

Q ss_pred             EEEEECccC-CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160          356 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  433 (658)
Q Consensus       356 ~v~veGPyG-~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell  433 (658)
                      +|.+.+|.| .+.........+||||||+||||+++++++.+....      ..++.|+|++|+. +|+.+.+++ ++..
T Consensus       195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~------~~~~~L~~G~R~~~~D~~y~~el-~~~~  267 (360)
T cd06199         195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA------KGKNWLFFGERHFATDFLYQDEL-QQWL  267 (360)
T ss_pred             EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC------CCcEEEEEcCCCCccchhHHHHH-HHHH
Confidence            356666555 443222345799999999999999999998875431      3579999999997 577554444 3332


Q ss_pred             CCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCC----CCCCceeEeecCCCc
Q 006160          434 CPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPV----PSGCAMSVLVGTGNN  488 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~----~~d~~~~~v~Gp~~~  488 (658)
                          .....++++..++|+....   + ..+..+.+....    ..+.....+|||.+.
T Consensus       268 ----~~~~~~~~~~a~Sr~~~~~---~-yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~  318 (360)
T cd06199         268 ----KDGVLTRLDTAFSRDQAEK---V-YVQDRMREQGAELWAWLEEGAHFYVCGDAKR  318 (360)
T ss_pred             ----HcCCCeEEEEEEccCCCCC---c-cHHHHHHHhHHHHHHHHhCCCEEEEECCCcc
Confidence                2334567888888865321   1 111111111110    112466779999965

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.28  E-value=4.8e-11  Score=130.87  Aligned_cols=124  Identities=15%  Similarity=0.151  Sum_probs=78.8

Q ss_pred             CeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHh
Q 006160          353 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKE  431 (658)
Q Consensus       353 ~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~e  431 (658)
                      ..+.+.+.||+|.+.......+.+||||||+||||+++++++.......+.  ...++.|+|++|+. +|+.+.+++ ++
T Consensus       210 d~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~ly~~el-~~  286 (384)
T cd06206         210 DSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGR--KLAPALLFFGCRHPDHDDLYRDEL-EE  286 (384)
T ss_pred             CeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCC--CcCCEEEEEeCCCCCcccchHHHH-HH
Confidence            456777899999865433356789999999999999999998865432111  23579999999999 677555444 33


Q ss_pred             ccCCccCCCCceEEEEEEcCCCCCCCCccccccccccc----ccCCCCCCceeEeecCCC
Q 006160          432 SICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSS----IYPVPSGCAMSVLVGTGN  487 (658)
Q Consensus       432 ll~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~----~~P~~~d~~~~~v~Gp~~  487 (658)
                      ..     +..+++++..++++.+.  ..+ ..+..+..    +.....+.....+|||..
T Consensus       287 ~~-----~~~~~~l~~a~Sr~~~~--~~~-yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~  338 (384)
T cd06206         287 WE-----AAGVVSVRRAYSRPPGG--GCR-YVQDRLWAEREEVWELWEQGARVYVCGDGR  338 (384)
T ss_pred             HH-----HCCCeEEEEEecccCCC--CCE-echhhHHhhHHHHHHHHHCCcEEEEECCCc
Confidence            32     23457888888876432  111 11111100    000011356678999997

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.23  E-value=2.4e-11  Score=140.25  Aligned_cols=85  Identities=9%  Similarity=0.099  Sum_probs=56.7

Q ss_pred             EEEECccCC-CccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHhccC
Q 006160          357 ASVEGPYGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESIC  434 (658)
Q Consensus       357 v~veGPyG~-~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~ell~  434 (658)
                      |.|.||.|. +.........++|||||+|||||+++++++..+..      ..++.|+|++|+ .+|+.+.+++. +.. 
T Consensus       433 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~g~~~LffG~R~~~~D~ly~~El~-~~~-  504 (597)
T TIGR01931       433 VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA------KGKNWLFFGNPHFTTDFLYQVEWQ-NYL-  504 (597)
T ss_pred             EEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC------CCCEEEEECCCCCCcchhHHHHHH-HHH-
Confidence            556666554 43222345689999999999999999998876542      357999999999 66776555443 322 


Q ss_pred             CccCCCCceEEEEEEcCC
Q 006160          435 PFFSDKLNLETFIYVTRE  452 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~  452 (658)
                         .+....+++...+|+
T Consensus       505 ---~~~~l~~l~~afSRd  519 (597)
T TIGR01931       505 ---KKGVLTKMDLAFSRD  519 (597)
T ss_pred             ---HcCCCceeEEEEecC
Confidence               122234466667774

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.23  E-value=7.4e-11  Score=129.32  Aligned_cols=92  Identities=15%  Similarity=0.131  Sum_probs=64.0

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccC
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  434 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~  434 (658)
                      ++.+.||+|.+.........+||||||+|||||++++++.....+.+  ....++.|+|++|+. +|+.+.+++ ++.. 
T Consensus       213 ~v~v~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~--~~~~~~~L~~G~R~~~~d~~y~~el-~~~~-  288 (382)
T cd06207         213 RVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG--PEIGPVLLYFGCRHEDKDYLYKEEL-EEYE-  288 (382)
T ss_pred             EEEEEEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC--ccCCCEEEEECCCCCCccccHHHHH-HHHH-
Confidence            46788899975433233578999999999999999999876542211  124689999999998 777554444 3332 


Q ss_pred             CccCCCCceEEEEEEcCCCC
Q 006160          435 PFFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~~~  454 (658)
                         .....+++++..+|+..
T Consensus       289 ---~~~~~~~~~~a~Srd~~  305 (382)
T cd06207         289 ---KSGVLTTLGTAFSRDQP  305 (382)
T ss_pred             ---hCCCCceEEEEecCCCC
Confidence               23345678888887653

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>PRK06214 sulfite reductase; Provisional

Probab=99.20  E-value=1.5e-10  Score=131.21  Aligned_cols=124  Identities=14%  Similarity=0.148  Sum_probs=72.1

Q ss_pred             CeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHh
Q 006160          353 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKE  431 (658)
Q Consensus       353 ~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~e  431 (658)
                      ..+.+.+.+|+| +.........+||||||+|||||++++++.+....      ..++.|+|++|+ .+|+.+.++ +++
T Consensus       364 d~V~v~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~------~g~~~LffG~R~~~~D~ly~dE-L~~  435 (530)
T PRK06214        364 TRVRVYVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA------PGRNWLFFGHQRSATDFFYEDE-LNG  435 (530)
T ss_pred             CEEEEEecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC------CCCeEEEEEecCChhhhHHHHH-HHH
Confidence            556777888888 43222345689999999999999999998765431      357899999966 456644443 333


Q ss_pred             ccCCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          432 SICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       432 ll~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      ..    ......++++..+|+........+...+....+.....+.....||||...
T Consensus       436 l~----~~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~  488 (530)
T PRK06214        436 LK----AAGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKR  488 (530)
T ss_pred             HH----HhCCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHH
Confidence            32    123334566777776432111111110000011001123466789999865

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.17  E-value=4.1e-10  Score=124.11  Aligned_cols=126  Identities=10%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             EEEEC-ccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160          357 ASVEG-PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  433 (658)
Q Consensus       357 v~veG-PyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell  433 (658)
                      +.+.| |.|.+..... ....++|||||+||||+++++++..+..+........++.|+|++|+. +|+.+.+++ ++..
T Consensus       223 v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El-~~~~  301 (398)
T cd06203         223 VPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDEL-EEFL  301 (398)
T ss_pred             EEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHH-HHHH
Confidence            55677 5665433222 357899999999999999999988653211111124679999999998 677655544 3332


Q ss_pred             CCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCC-----CCCCceeEeecCCCc
Q 006160          434 CPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPV-----PSGCAMSVLVGTGNN  488 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~-----~~d~~~~~v~Gp~~~  488 (658)
                          .+....++++.++|++..+...+ .++..+.+....     ........+|||...
T Consensus       302 ----~~~~~~~~~~a~SRd~~~~g~k~-yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~  356 (398)
T cd06203         302 ----EEGILTRLIVAFSRDENDGSTPK-YVQDKLEERGKKLVDLLLNSNAKIYVCGDAKG  356 (398)
T ss_pred             ----HcCCCceEEEEECCCCCCCCCce-ecchHHHhCHHHHHHHHhcCCcEEEEECCcch
Confidence                23334567777888755322222 222222211110     113466789999765

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.07  E-value=2.1e-09  Score=127.69  Aligned_cols=76  Identities=24%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCC--CC-cceeEEeeeCCCCCCCeEEEEEEEcCchHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WL-QWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR  198 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is--~~-q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~  198 (658)
                      ..+|++.+.+.++++++++..|.. -.++||||+.|++++.+  .+ ...||||++.+.+ ++.++|++|.+|..|+.|.
T Consensus       792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvVGkgT~~Ls  870 (1028)
T PRK06567        792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEVGKSTSLCK  870 (1028)
T ss_pred             ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEEChHHHHHh
Confidence            468889999999999999988763 46899999999986432  22 4568999998764 5889999999999999884


Q ss_pred             H
Q 006160          199 D  199 (658)
Q Consensus       199 ~  199 (658)
                      +
T Consensus       871 ~  871 (1028)
T PRK06567        871 T  871 (1028)
T ss_pred             c
Confidence            4

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.06  E-value=1.5e-09  Score=120.29  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=60.8

Q ss_pred             EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccCC
Q 006160          357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICP  435 (658)
Q Consensus       357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~~  435 (658)
                      +.+.+|.|.+.........+||||||+||||+++++++.....+.+.  ...++.|+|++|+. +|+.+.+++ ++..  
T Consensus       249 v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~ly~~el-~~~~--  323 (416)
T cd06204         249 VPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGK--KVGPTLLFFGCRHPDEDFIYKDEL-EEYA--  323 (416)
T ss_pred             EEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC--ccCCEEEEEcCCCCCcccchHHHH-HHHH--
Confidence            44555778654322345799999999999999999998765332111  23579999999998 677555443 3332  


Q ss_pred             ccCCCCceEEEEEEcCCC
Q 006160          436 FFSDKLNLETFIYVTRET  453 (658)
Q Consensus       436 ~~~~~~~l~I~iyVT~~~  453 (658)
                        .....++++..++|+.
T Consensus       324 --~~~~~~~l~~a~Sr~~  339 (416)
T cd06204         324 --KLGGLLELVTAFSREQ  339 (416)
T ss_pred             --HcCCceEEEEEECcCC
Confidence              2334577888888764

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=98.97  E-value=3.3e-09  Score=93.66  Aligned_cols=75  Identities=21%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             EEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          124 VDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       124 ~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      +++++++.+++++..+++..+.   .+.|.||||+.|+++..+...+||||++|.+.+ ++.++|+||..  |.+|+.|.
T Consensus         2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~~~G~~S~~L~   80 (99)
T PF00970_consen    2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRYPNGRVSRYLH   80 (99)
T ss_dssp             EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEECTTSHHHHHHH
T ss_pred             EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEeccCCHHHHHHH
Confidence            6788999999998888887663   367999999999999555678999999999964 57999999999  88999884


Q ss_pred             H
Q 006160          199 D  199 (658)
Q Consensus       199 ~  199 (658)
                      +
T Consensus        81 ~   81 (99)
T PF00970_consen   81 Q   81 (99)
T ss_dssp             T
T ss_pred             h
Confidence            3

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=98.93  E-value=2.7e-09  Score=123.12  Aligned_cols=88  Identities=13%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             EEEEECccCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHhcc
Q 006160          356 TASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI  433 (658)
Q Consensus       356 ~v~veGPyG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~ell  433 (658)
                      ++.|.||.|+.+. .......+||||+|+|||||++++++......      ..++.|+|++|+ ..|+.+-+++ ++..
T Consensus       435 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~~~~~LffG~R~~~~D~lY~~El-~~~~  507 (600)
T PRK10953        435 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGA------PGKNWLFFGNPHFTEDFLYQVEW-QRYV  507 (600)
T ss_pred             EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCC------CCCeEEEeeccCCccchhHHHHH-HHHH
Confidence            4667788865433 22345799999999999999999998865431      357999999998 5676544443 3332


Q ss_pred             CCccCCCCceEEEEEEcCCCC
Q 006160          434 CPFFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~~  454 (658)
                      .    +..-.+++...+|+..
T Consensus       508 ~----~g~l~~l~~afSRd~~  524 (600)
T PRK10953        508 K----EGLLTRIDLAWSRDQK  524 (600)
T ss_pred             H----cCCcceEEEEECCCCC
Confidence            1    2222346677777653

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=98.89  E-value=1.8e-08  Score=111.41  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=52.2

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhc--cCCCCCCceEEEEEeeccC-cchhhHHHHHHhccCCccCCCCceEEEEE
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRIN--EGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICPFFSDKLNLETFIY  448 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~--~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~~~~~~~~~l~I~iy  448 (658)
                      ....+||||||+|||||++++++.....+  ........++.|++++|+. +|+.+.++ +++..    ......+++..
T Consensus       245 ~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~E-l~~~~----~~~~~~~~~~a  319 (406)
T cd06202         245 PSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEE-TEEAK----NKGVLTEVYTA  319 (406)
T ss_pred             CCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHH-HHHHH----HcCCCceEEEE
Confidence            45789999999999999999998654321  0011124689999999999 67655444 33332    23344567788


Q ss_pred             EcCCC
Q 006160          449 VTRET  453 (658)
Q Consensus       449 VT~~~  453 (658)
                      ++|+.
T Consensus       320 ~SR~~  324 (406)
T cd06202         320 LSREP  324 (406)
T ss_pred             EcCCC
Confidence            88864

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana

Probab=98.83  E-value=9.5e-09  Score=93.98  Aligned_cols=79  Identities=28%  Similarity=0.484  Sum_probs=55.7

Q ss_pred             hhhhhhh-------HHHHHHHHHHHhhhhHH-HHHHhhhhccccchhHHHHHHHHHHHHHHchhhHh-hhcchHHHHHHH
Q 006160           11 ILRWCSL-------RFTGYFMIAWDIQGRLV-QELLAWRNIGIANFPGVISLLAGLMMWATSFHPVR-KHFFQLFFYTHQ   81 (658)
Q Consensus        11 ~HRW~a~-------~h~~~y~i~w~~~~~~~-~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iR-r~~YE~F~~~H~   81 (658)
                      +|||+|+       .|++.|.+.|...+... .+.......+..+.+|+++++++++|+++|++++| |+.||.|+++|+
T Consensus        36 ~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~  115 (125)
T PF01794_consen   36 FHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHI  115 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            9999993       34555555555433210 11111122345688999999999999999999999 889999999999


Q ss_pred             HHHHHhhh
Q 006160           82 LYVVFVVF   89 (658)
Q Consensus        82 l~ilflv~   89 (658)
                      ++++++++
T Consensus       116 ~~~~~~~l  123 (125)
T PF01794_consen  116 LFYIAFLL  123 (125)
T ss_pred             HHHHHHHH
Confidence            98654443

This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=98.78  E-value=7.6e-09  Score=92.33  Aligned_cols=99  Identities=18%  Similarity=0.318  Sum_probs=61.8

Q ss_pred             EEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC-ceEEEEEEcCCCC-C
Q 006160          378 LVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL-NLETFIYVTRETE-P  455 (658)
Q Consensus       378 lVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~-~l~I~iyVT~~~~-~  455 (658)
                      |||||+||||+++++++++++.      ..++|+|+|++|+.+++.+.+++. ++.    .... ++.+..+ .+... +
T Consensus         1 lIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~-~~~----~~~~~~~~~~~~-~~~~~~~   68 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLERN------DNRKVTLFYGARTPEDLLFRDELE-ALA----QEYPNRFHVVYV-SSPDDGW   68 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHT------CTSEEEEEEEESSGGGSTTHHHHH-HHH----HHSTTCEEEEEE-TTTTSST
T ss_pred             CeecceeHHHHHHHHHHHHHhC------CCCCEEEEEEEcccccccchhHHH-HHH----hhcccccccccc-ccccccc
Confidence            7999999999999999999873      246899999999999997665543 322    1122 3444333 22222 2


Q ss_pred             CCCcccccccccccccC--CCCCCceeEeecCCCc
Q 006160          456 PLEEGELHKTMSSSIYP--VPSGCAMSVLVGTGNN  488 (658)
Q Consensus       456 ~~~~~~~~~~~v~~~~P--~~~d~~~~~v~Gp~~~  488 (658)
                      ....+.+...+.....+  ...+...+.+|||+..
T Consensus        69 ~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m  103 (109)
T PF00175_consen   69 DGFKGRVTDLLLEDLLPEKIDPDDTHVYICGPPPM  103 (109)
T ss_dssp             TSEESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHH
T ss_pred             CCceeehhHHHHHhhcccccCCCCCEEEEECCHHH
Confidence            22233333333233322  1235678999999854

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.53  E-value=2e-07  Score=105.71  Aligned_cols=6  Identities=33%  Similarity=0.274  Sum_probs=2.8

Q ss_pred             EECccC
Q 006160          359 VEGPYG  364 (658)
Q Consensus       359 veGPyG  364 (658)
                      +|+|.-
T Consensus       622 ~e~~Mr  627 (1102)
T KOG1924|consen  622 PEVPMR  627 (1102)
T ss_pred             CCCccc
Confidence            444544

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=97.85  E-value=0.00011  Score=75.65  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhccc-----cceEEEEEEEEecCceEEEEEeCCC----CCCcCCCcEEEEEe--CCCCCCcc
Q 006160           99 FSMAAGGIFLFILDRFLRFCQS-----RRTVDVLSASCLPCGTVELVLSKPA----NLRYNALSFFFLQV--RELSWLQW  167 (658)
Q Consensus        99 ~~~~~~~i~l~~~Dr~~R~~r~-----~~~~~v~sv~~l~~~v~~l~i~~p~----~~~~~PGQ~v~L~v--p~is~~q~  167 (658)
                      |.-.+.+++=.++|-=-..+++     ...+.+...+...+|+.++.+....    .....|||||-++-  |+.+.-..
T Consensus       122 Ws~aYgava~i~i~~EKK~Yq~~~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~  201 (385)
T KOG3378|consen  122 WSQAYGAVAQIMIDSEKKVYQSRGWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTL  201 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHH
Confidence            3335666655555543344443     3467788777788999999886321    24678999999874  33332112


Q ss_pred             eeEEeeeCCCCCCCeEEEEEEEc
Q 006160          168 HPFSVSSSPLEGKYHSSVLIKVL  190 (658)
Q Consensus       168 HPFTIaS~p~~~~~~lsl~IR~~  190 (658)
                      +=++.+.......+.+.|.+|..
T Consensus       202 ~~~~~S~~~~t~rN~~R~sVr~~  224 (385)
T KOG3378|consen  202 REYSLSNRVDTCRNQFRISVRRV  224 (385)
T ss_pred             HHHHHhhhhhhhccceeEEEeeh
Confidence            22333333333457888988887

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=97.79  E-value=0.00017  Score=83.08  Aligned_cols=102  Identities=13%  Similarity=0.195  Sum_probs=64.9

Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESICPFFSDKLNLETFIYVTR  451 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~  451 (658)
                      ...++|||-|+|||||.+++++-..+..      ..++.|++++|+ ..|+.+-++ .++..    .+....++....+|
T Consensus       440 ~~PiIMIG~GTGIAPFRafvq~r~~~~~------~gk~wLfFG~R~~~~DfLY~~E-we~~~----~~G~~~~l~~AfSR  508 (587)
T COG0369         440 ETPIIMIGPGTGIAPFRAFVQERAANGA------EGKNWLFFGCRHFTEDFLYQEE-WEEYL----KDGVLTRLDLAFSR  508 (587)
T ss_pred             CCceEEEcCCCCchhHHHHHHHHHhccc------cCceEEEecCCCCccchhhHHH-HHHHH----hcCCceeEEEEEee
Confidence            3889999999999999999998876652      237999999999 555544333 33322    23346788888998


Q ss_pred             CCCCCCCcccccc---cccccccCCCCCCceeEeecCCCc
Q 006160          452 ETEPPLEEGELHK---TMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       452 ~~~~~~~~~~~~~---~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      +........+...   +.+..+   .++.....|||-..+
T Consensus       509 dq~~KiYVQd~lre~~del~~~---l~~ga~~YVCGd~~~  545 (587)
T COG0369         509 DQEEKIYVQDRLREQADELWEW---LEEGAHIYVCGDAKG  545 (587)
T ss_pred             cCCCCccHHHHHHHhHHHHHHH---HHCCCEEEEeCCCcc
Confidence            8653333222111   111111   123467789996544

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=97.55  E-value=0.00043  Score=80.12  Aligned_cols=108  Identities=15%  Similarity=0.177  Sum_probs=70.2

Q ss_pred             cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEc
Q 006160          371 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  450 (658)
Q Consensus       371 ~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT  450 (658)
                      +....++|||-|+|||||++++++.....+.+...... +.|+++||+.++...+++.+++..    ......++..-++
T Consensus       489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~S  563 (645)
T KOG1158|consen  489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAFS  563 (645)
T ss_pred             CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeeee
Confidence            34578999999999999999999998876544323344 899999999998866666554431    2334456777788


Q ss_pred             CCCCCCCCccccccc-------ccccccCCCCCCceeEeecCCCc
Q 006160          451 RETEPPLEEGELHKT-------MSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       451 ~~~~~~~~~~~~~~~-------~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      |+..   +.....+.       ++.++.  ..+....-|||.-.+
T Consensus       564 Req~---~~k~YVQd~l~e~~d~v~~~L--~~~~g~iYvCGd~~~  603 (645)
T KOG1158|consen  564 REQT---PKKIYVQDRLREYADEVWELL--KKEGGHIYVCGDAKG  603 (645)
T ss_pred             ccCC---CCceehhhHHHHHHHHHHHHH--hcCCcEEEEecCCcc
Confidence            8753   12222211       111111  123667778988865

>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed

Probab=97.09  E-value=0.0039  Score=63.02  Aligned_cols=82  Identities=15%  Similarity=0.033  Sum_probs=55.6

Q ss_pred             hhhhhhhHH---HHHHHHHHHhhhhH--HHHH-HhhhhccccchhHHHHHHHHHHHHHHchhhHhhh-cchHHHHHHHHH
Q 006160           11 ILRWCSLRF---TGYFMIAWDIQGRL--VQEL-LAWRNIGIANFPGVISLLAGLMMWATSFHPVRKH-FFQLFFYTHQLY   83 (658)
Q Consensus        11 ~HRW~a~~h---~~~y~i~w~~~~~~--~~~~-~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~-~YE~F~~~H~l~   83 (658)
                      +|||+|.--   +++|...|...+..  .+++ .+.. .....+.|.+++++++.|.+||.+..||+ .| .|+.+|.+.
T Consensus        76 ~RR~LGl~af~~a~lH~~~y~~~~~~~~~~~~~~~i~-~~~~i~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~  153 (205)
T PRK05419         76 TRRLLGLWAFFYATLHLLSYLLLDLGLDWSLLGKEIV-KRPYITVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLV  153 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence            899999221   44555433332111  0111 1111 23446789999999999999999998776 67 899999998


Q ss_pred             HHHhhhhhhhc
Q 006160           84 VVFVVFLALHV   94 (658)
Q Consensus        84 ilflv~l~~H~   94 (658)
                      .+++++..+|.
T Consensus       154 Y~a~~L~~~H~  164 (205)
T PRK05419        154 YLIAILAPLHY  164 (205)
T ss_pred             HHHHHHHHHHH
Confidence            77777889994

>COG2717 Predicted membrane protein [Function unknown]

Probab=95.82  E-value=0.059  Score=54.37  Aligned_cols=74  Identities=20%  Similarity=0.081  Sum_probs=56.0

Q ss_pred             ccchhHHHHHHHHHHHHHHchhhHhhhcchHHHHHHHHHHHHhhhhhhhcchh-----HHHHHHHH-HHHHHHHHHhhhc
Q 006160           45 IANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDF-----VFSMAAGG-IFLFILDRFLRFC  118 (658)
Q Consensus        45 ~~~~~Gvial~~l~im~~tSl~~iRr~~YE~F~~~H~l~ilflv~l~~H~~~~-----~~~~~~~~-i~l~~~Dr~~R~~  118 (658)
                      .....|++|+++|..|.+||.+++||+.=..|..+|.+..+++++..+|....     ....++.. .+.+++.|+.+..
T Consensus       115 pyitiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~  194 (209)
T COG2717         115 PYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTR  194 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999988855999999999999999999997421     11222222 2346677776654

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=95.00  E-value=0.061  Score=62.59  Aligned_cols=14  Identities=7%  Similarity=0.150  Sum_probs=7.9

Q ss_pred             chhHHHHHHHHHHH
Q 006160           47 NFPGVISLLAGLMM   60 (658)
Q Consensus        47 ~~~Gvial~~l~im   60 (658)
                      .+.|.+|-+|+.++
T Consensus        38 svl~~lasic~v~g   51 (830)
T KOG1923|consen   38 SVLGSLASICYVIG   51 (830)
T ss_pred             HHHHHHHHHHHHhc
Confidence            45566666555554

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=94.59  E-value=0.19  Score=56.15  Aligned_cols=41  Identities=20%  Similarity=0.533  Sum_probs=33.3

Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN  420 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~  420 (658)
                      ...++||+-|+||||+.+++++-+.+.+       ....|+++||+.+
T Consensus       432 ~~PlImVGPGTGvAPfRa~i~er~~q~~-------~~~~lFfGCR~K~  472 (574)
T KOG1159|consen  432 NKPLIMVGPGTGVAPFRALIQERIYQGD-------KENVLFFGCRNKD  472 (574)
T ss_pred             CCCeEEEcCCCCcccHHHHHHHHHhhcc-------CCceEEEecccCC
Confidence            5699999999999999999998776432       2347788999876

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=93.41  E-value=0.12  Score=65.44  Aligned_cols=6  Identities=33%  Similarity=0.606  Sum_probs=2.5

Q ss_pred             eEEEEE
Q 006160          616 DVGVIV  621 (658)
Q Consensus       616 ~VgV~~  621 (658)
                      |+|+-+
T Consensus      1947 RLGLR~ 1952 (2039)
T PRK15319       1947 RLGLRV 1952 (2039)
T ss_pred             EEEEEE
Confidence            444443

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=92.98  E-value=0.13  Score=65.17  Aligned_cols=7  Identities=14%  Similarity=-0.049  Sum_probs=3.1

Q ss_pred             EEEEECc
Q 006160          356 TASVEGP  362 (658)
Q Consensus       356 ~v~veGP  362 (658)
                      -+.++|=
T Consensus      1765 W~Ri~GG 1771 (2039)
T PRK15319       1765 WARFKAG 1771 (2039)
T ss_pred             EEEEecc
Confidence            3445543

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=92.47  E-value=0.27  Score=52.51  Aligned_cols=14  Identities=29%  Similarity=0.529  Sum_probs=5.9

Q ss_pred             CCCCCCCCCCCCCC
Q 006160          280 PPPQGPHPPVPPPQ  293 (658)
Q Consensus       280 ~~~~~~~~~~~~~~  293 (658)
                      |+|+||++|+|+|+
T Consensus       273 P~pp~~~qq~p~pp  286 (498)
T KOG4849|consen  273 PLPPQQIQQQPQPP  286 (498)
T ss_pred             CCCchhhccCCCCC
Confidence            33444444444443

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=89.57  E-value=0.33  Score=49.27  Aligned_cols=29  Identities=34%  Similarity=0.737  Sum_probs=24.9

Q ss_pred             EEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160          618 GVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD  657 (658)
Q Consensus       618 gV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~  657 (658)
                      -|++|||+.|.++|++.+++.           .+|.|.|+
T Consensus       192 ~v~~CGP~~m~~~~~~~~~~~-----------~~~~e~f~  220 (220)
T cd06197         192 EVYLCGPPALEKAVLEWLEGK-----------KVHRESFA  220 (220)
T ss_pred             cEEEECcHHHHHHHHHHhhhc-----------eeEecccC
Confidence            689999999999999988751           67888885

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=89.34  E-value=0.91  Score=50.86  Aligned_cols=17  Identities=18%  Similarity=0.472  Sum_probs=11.6

Q ss_pred             CCCCCCcceeEEeeeCC
Q 006160          160 RELSWLQWHPFSVSSSP  176 (658)
Q Consensus       160 p~is~~q~HPFTIaS~p  176 (658)
                      +.+++-+.|+|..+-.+
T Consensus       246 ~hVgwd~~~gf~~~~~p  262 (569)
T KOG3671|consen  246 PHVGWDEQVGFDSAPAP  262 (569)
T ss_pred             cccCCCcCCCcccCCCC
Confidence            34556788999886543

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=89.07  E-value=0.76  Score=51.48  Aligned_cols=13  Identities=23%  Similarity=0.687  Sum_probs=6.2

Q ss_pred             hhhhccccchhHHHHH
Q 006160           39 AWRNIGIANFPGVISL   54 (658)
Q Consensus        39 ~w~~~~~~~~~Gvial   54 (658)
                      .|.++   ..+|+++|
T Consensus        56 ~W~~~---~~~Gal~l   68 (569)
T KOG3671|consen   56 HWNKT---GLCGALCL   68 (569)
T ss_pred             hhccc---cCceeEEE
Confidence            55553   34455443

>PRK15313 autotransport protein MisL; Provisional

Probab=88.21  E-value=0.79  Score=55.27  Aligned_cols=10  Identities=20%  Similarity=0.441  Sum_probs=4.4

Q ss_pred             eEEEEEEEcC
Q 006160          182 HSSVLIKVLG  191 (658)
Q Consensus       182 ~lsl~IR~~G  191 (658)
                      .-.+.|+..|
T Consensus       498 ~T~v~V~N~G  507 (955)
T PRK15313        498 NTFVAVNNIG  507 (955)
T ss_pred             eEEEEEEeCC
Confidence            3344444443

>PRK08051 fre FMN reductase; Validated

Probab=86.14  E-value=0.49  Score=48.21  Aligned_cols=34  Identities=12%  Similarity=0.297  Sum_probs=24.6

Q ss_pred             EEEEeCChhhHHHHHHHH-HhcccCCCCCCceEEEEecccC
Q 006160          618 GVIVCGPPSLQSSVAKEI-RSHSLMRECHDPIFHFHSHSFD  657 (658)
Q Consensus       618 gV~~CGP~~m~~~V~~~~-~~~~~~~~~~~~~~~fhsesF~  657 (658)
                      -|++|||+.|.++|.+.+ .+...   ..+   ++|.|+|+
T Consensus       196 ~vyicGp~~m~~~v~~~l~~~~G~---~~~---~i~~e~f~  230 (232)
T PRK08051        196 DIYIAGRFEMAKIARELFCRERGA---REE---HLFGDAFA  230 (232)
T ss_pred             EEEEECCHHHHHHHHHHHHHHcCC---CHH---Heeccccc
Confidence            499999999999999998 66432   222   45666664

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=84.63  E-value=0.64  Score=46.89  Aligned_cols=35  Identities=26%  Similarity=0.581  Sum_probs=25.9

Q ss_pred             eEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160          616 DVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF  656 (658)
Q Consensus       616 ~VgV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF  656 (658)
                      .--|++|||+.|.+++.+..++....   .+   +.|.|+|
T Consensus       190 ~~~v~vCGp~~m~~~~~~~l~~~G~~---~~---~i~~e~f  224 (224)
T cd06189         190 DFDVYACGSPEMVYAARDDFVEKGLP---EE---NFFSDAF  224 (224)
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCC---HH---HcccCCC
Confidence            34599999999999999999874432   22   4555666

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=83.00  E-value=1.9  Score=43.72  Aligned_cols=33  Identities=18%  Similarity=0.489  Sum_probs=24.3

Q ss_pred             EEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160          618 GVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF  656 (658)
Q Consensus       618 gV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF  656 (658)
                      .|++|||+.|.+++++.+++...   ...   +.|.|.|
T Consensus       203 ~vyicGp~~m~~~~~~~l~~~G~---~~~---~i~~E~f  235 (236)
T cd06210         203 DIYLCGPPGMVDAAFAAAREAGV---PDE---QVYLEKF  235 (236)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCC---CHH---Heeeccc
Confidence            48999999999999999987432   111   4566666

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=82.95  E-value=4.4  Score=47.87  Aligned_cols=16  Identities=56%  Similarity=1.038  Sum_probs=7.6

Q ss_pred             CCCCCCCCCCCCCCCc
Q 006160          291 PPQGPPPPLPPPKGNL  306 (658)
Q Consensus       291 ~~~~~~~~~~~~~~~~  306 (658)
                      ||+.||||..|..-|.
T Consensus       654 pp~~pppp~~p~~~~~  669 (894)
T KOG0132|consen  654 PPQTPPPPMFPQGFNA  669 (894)
T ss_pred             CCCCCCCCCCccCCCC
Confidence            3345555555544443

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=82.54  E-value=0.97  Score=45.58  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEEeCChhhHHHHHHHHHhcc
Q 006160          617 VGVIVCGPPSLQSSVAKEIRSHS  639 (658)
Q Consensus       617 VgV~~CGP~~m~~~V~~~~~~~~  639 (658)
                      -.|++|||+.|.+++++.++++.
T Consensus       198 ~~v~icGp~~m~~~~~~~l~~~g  220 (231)
T cd06215         198 RTVFVCGPAGFMKAVKSLLAELG  220 (231)
T ss_pred             CeEEEECCHHHHHHHHHHHHHcC
Confidence            46999999999999999997744

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=81.54  E-value=2.3  Score=42.64  Aligned_cols=22  Identities=18%  Similarity=0.664  Sum_probs=19.5

Q ss_pred             EEEEEeCChhhHHHHHHHHHhc
Q 006160          617 VGVIVCGPPSLQSSVAKEIRSH  638 (658)
Q Consensus       617 VgV~~CGP~~m~~~V~~~~~~~  638 (658)
                      --|++|||+.|.+++++..++.
T Consensus       191 ~~v~vcGp~~~~~~v~~~l~~~  212 (224)
T cd06187         191 HDIYICGPPAMVDATVDALLAR  212 (224)
T ss_pred             CEEEEECCHHHHHHHHHHHHHc
Confidence            4599999999999999999774

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=80.92  E-value=0.79  Score=50.02  Aligned_cols=58  Identities=21%  Similarity=0.398  Sum_probs=40.5

Q ss_pred             HHHhhhhccccchhHHHHHHHHHHHHHHchhhHhh-hcc---hHHHHHHHHH-HHHhhhhhhhc
Q 006160           36 ELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRK-HFF---QLFFYTHQLY-VVFVVFLALHV   94 (658)
Q Consensus        36 ~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr-~~Y---E~F~~~H~l~-ilflv~l~~H~   94 (658)
                      +...|.+ +.....|++|+.+|.++.+.+.+.-+- .+|   +.=|..|... ++.++++++|.
T Consensus        32 ~~~s~~~-~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H~   94 (438)
T COG4097          32 NLLSWRL-EFSQFLGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHN   94 (438)
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHH
Confidence            4567776 345889999999998887777654432 133   4556788765 67777888885

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=80.72  E-value=57  Score=34.49  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=34.1

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHH
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDIL  396 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll  396 (658)
                      ++.|-||=|...+. ..++..+|++==+++-.+..+|+++-
T Consensus       127 ~l~i~GP~g~~~p~-~~~~~~lLigDetAlPAIa~iLE~lp  166 (265)
T COG2375         127 TLTIMGPRGSLVPP-EAADWYLLIGDETALPAIARILETLP  166 (265)
T ss_pred             EEEEeCCCCCCCCC-CCcceEEEeccccchHHHHHHHHhCC
Confidence            58899999986555 57899999999999999999888773

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=80.66  E-value=1.3  Score=44.78  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             EEEEEeCChhhHHHHHHHHHhcc
Q 006160          617 VGVIVCGPPSLQSSVAKEIRSHS  639 (658)
Q Consensus       617 VgV~~CGP~~m~~~V~~~~~~~~  639 (658)
                      --|++|||+.|.++|.+.+.+..
T Consensus       202 ~~v~icGp~~m~~~v~~~l~~~G  224 (235)
T cd06217         202 RRVYVCGPPAFVEAATRLLLELG  224 (235)
T ss_pred             CEEEEECCHHHHHHHHHHHHHcC
Confidence            46999999999999999998744

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	658
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	6e-18
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	5e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-14
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-11
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-11
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	1e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	2e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	7e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	9e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	8e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	2e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	2e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	3e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	5e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	7e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04
1rm1_C	286	Transcription initiation factor IIA large chain; y	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	2e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	4e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	5e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	7e-04
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	5e-04
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	6e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	7e-04
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	7e-04

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186

 Score = 81.3 bits (200), Expect = 6e-18
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKS-CLPRNVLIVWAVK 417
           V+GP+G        YE ++LV  GIG++PF +IL  + ++     +    + +   W  +
Sbjct: 3   VDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCR 62

Query: 418 KSNELSLLSNFYK--ESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYP 472
            ++     ++  +  ES     ++   L   IY+T   E       +H      +  
Sbjct: 63  DTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVIT 119

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186

 Score = 55.1 bits (132), Expect = 5e-09
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 550 LWERKSSARENYKDDSIEV-------DNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFK 602
           L   +S  +E      +         D +Q      H+D  K             RP++ 
Sbjct: 74  LQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWD 133

Query: 603 EIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 656
             F + + +  +  +GV +CGP +L  +++K+  S+S         F F+  +F
Sbjct: 134 NEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNS-ESGPRGVHFIFNKENF 186

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 72.8 bits (178), Expect = 1e-14
 Identities = 35/140 (25%), Positives = 43/140 (30%), Gaps = 27/140 (19%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
           G P  VP P+       P +G              GG S+          V     A   
Sbjct: 113 GIPAGVPMPQAPAGLAGPVRGV-------------GGPSQQVMTPQGRGTVAAAAAAATA 159

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
                    PP    PP P  +G PPP        M               P +GPP  +
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM--------------RPPMGPPMGI 205

Query: 332 PPPQGSPPQRPPPSRHPLLP 351
           PP +G+P   PPP   P  P
Sbjct: 206 PPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 32/127 (25%), Positives = 38/127 (29%), Gaps = 34/127 (26%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
           GP   V  P+G                                  G P   PP +G PPP
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAA------------------TASIAGAPTQYPPGRGGPPP 177

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
                   P   GP P + PP GPP  +PP +G                T   + PP   
Sbjct: 178 PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG----------------TPMGMPPPGMR 221

Query: 332 PPPQGSP 338
           PPP G  
Sbjct: 222 PPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 59.3 bits (143), Expect = 5e-10
 Identities = 33/154 (21%), Positives = 40/154 (25%), Gaps = 21/154 (13%)

Query: 208 DSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV-GPPLPVPPPQ 266
           ++ V      PPP+       P  G             AGG         G P  VP PQ
Sbjct: 75  ENLVSMTVEGPPPKDTGIARVPLAGA------------AGGPGIGRAAGRGIPAGVPMPQ 122

Query: 267 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 326
                  P++  G P Q    P                            G        G
Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182

Query: 327 PPPP--------VPPPQGSPPQRPPPSRHPLLPP 352
            PPP        + PP G P   PP    P+  P
Sbjct: 183 APPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMP 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 211 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 270
           VG P            V          +         G     P +G   P P   G PP
Sbjct: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193

Query: 271 PGPPLQEEGP--PPQGPHPPVPPPQGPPPPLPPPKGNL 306
              P        PP    P   PP G  PP P  +G L
Sbjct: 194 GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 71.0 bits (173), Expect = 7e-13
 Identities = 28/205 (13%), Positives = 49/205 (23%), Gaps = 25/205 (12%)

Query: 210 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269
           +V P   +   +   P   P Q                    A       + +PP    P
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFM------------PPQDPAAAGMSYGQMGMPPQGAVP 54

Query: 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 329
             G   Q   P  +  H  +         +                  + +    + P  
Sbjct: 55  SMGQQ-QFLTPAQEQLHQQIDQATTSMNDMHLH------------NVPLVDPNAYMQPQV 101

Query: 330 PVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFL 389
           PV        Q+ P +      P+        P     P  L+ E    +       P L
Sbjct: 102 PVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPL 161

Query: 390 AILSDILHRINEGKSCLPRNVLIVW 414
            I  + +   +E  +  P  +    
Sbjct: 162 VIPPERMLVPSELSNASPDYIRSTL 186

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 67.5 bits (164), Expect = 9e-12
 Identities = 22/159 (13%), Positives = 33/159 (20%)

Query: 209 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268
                      P   P    PPQ P    M    + +    +  +      L     Q  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 269 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 328
                             P V P     P +P   G  + +    +A             
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 329 PPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEV 367
              P  Q  P         P+   T     +  P    +
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERML 169

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.5 bits (151), Expect = 3e-10
 Identities = 18/104 (17%), Positives = 22/104 (21%), Gaps = 11/104 (10%)

Query: 249 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 308
           +S     V P   +   Q A P   P Q   P             G PP    P      
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVP------ 54

Query: 309 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 352
                  G      P             +          PL+ P
Sbjct: 55  -----SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 2/151 (1%)

Query: 209 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268
           + +       PP+G  P +   Q         +  +     S  + H+     V P    
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 269 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 328
            P  P     G P Q    P+  P    P     +       L  +        P     
Sbjct: 98  QPQVPVQM--GTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLT 155

Query: 329 PPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359
            P PP    P +   PS      P  I +++
Sbjct: 156 LPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 60.5 bits (146), Expect = 8e-10
 Identities = 20/98 (20%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 257 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 316
           G  + +P           L    PP   P P  PPP  P    PP           ++ G
Sbjct: 18  GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRG 77

Query: 317 --GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 352
             G   T           P   +P   PP +   +   
Sbjct: 78  PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 28/150 (18%), Positives = 36/150 (24%), Gaps = 27/150 (18%)

Query: 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 264
           S           VP       P                   +  ++  +P V  P P PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAA-----------SDFLAALHPPVTVPDPAPP 51

Query: 265 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 324
           P  AP  G P  +           +  P GP      P                     Q
Sbjct: 52  PPPAPAAGNP-PDTVTGDSVLQRILRGPTGPGTTSLAP---------------AVRYGRQ 95

Query: 325 VGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 354
            GP  P   P  +    P    HP+  P  
Sbjct: 96  PGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 12/118 (10%)

Query: 254 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGP-PPPLPPPKGNLMYENLI 312
            H         P+G+    P                PP   P P P PPP          
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA--------- 55

Query: 313 VVAGGISETEPQVGPPPPVPP-PQGSPPQRPPPS-RHPLLPPTKITASVEGPYGHEVP 368
             AG   +T         +   P G       P+ R+   P  +  AS     G  VP
Sbjct: 56  PAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 21/104 (20%), Positives = 29/104 (27%), Gaps = 13/104 (12%)

Query: 203 SKSESDSQVGPPPPVP----PPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP 258
           + S+  + + PP  VP    PP   P   +PP     +         +          GP
Sbjct: 31  AASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD---------SVLQRILRGPTGP 81

Query: 259 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 302
                 P       P  +     P      VP     P P P P
Sbjct: 82  GTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 53.6 bits (128), Expect = 4e-08
 Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 256 VGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 315
           V P    PP    PPP P ++ E  P   P PP   P     P P PK            
Sbjct: 40  VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK------------ 87

Query: 316 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362
                    V      P     P +  P S      P ++T+S    
Sbjct: 88  ----PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATA 130

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.8 bits (126), Expect = 7e-08
 Identities = 24/149 (16%), Positives = 31/149 (20%), Gaps = 15/149 (10%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
           P  P+      P  + PPQ                      P V P     P    P   
Sbjct: 31  PAQPISVTMVTPADLEPPQAVQ---------------PPPEPVVEPEPEPEPIPEPPKEA 75

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 332
           P + E+  P   P P         P            +          T          P
Sbjct: 76  PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 135

Query: 333 PPQGSPPQRPPPSRHPLLPPTKITASVEG 361
               +   R      P  P       +EG
Sbjct: 136 VTSVASGPRALSRNQPQYPARAQALRIEG 164

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 26/135 (19%), Positives = 36/135 (26%), Gaps = 19/135 (14%)

Query: 232 GPVRNLMYENLILVAGGI-SEANPHVGPPLPVPPPQG---APPPGPPLQEEGPPPQGPHP 287
           G   +  + +  LV  G     +  +  P P  P       P    P Q   PPP+    
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVE 60

Query: 288 PVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 347
           P P P+  P P                       E     P P P P     ++P     
Sbjct: 61  PEPEPEPIPEPPKEAP---------------VVIEKPKPKPKPKPKPVKKVQEQPKRDVK 105

Query: 348 PLLPPTKITASVEGP 362
           P+            P
Sbjct: 106 PVESRPASPFENTAP 120

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 21/122 (17%), Positives = 26/122 (21%), Gaps = 17/122 (13%)

Query: 252 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 311
               + PP  V PP        P  E  P P    P V     P P   P          
Sbjct: 41  TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP-------- 92

Query: 312 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHL 371
                     +     P     P  S P  P  +  P    +    +        V    
Sbjct: 93  ---------VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

Query: 372 MY 373
             
Sbjct: 144 RA 145

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.7 bits (121), Expect = 9e-07
 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 250 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP-PQGPHPPVPPPQGPPPPLPPPKGNLMY 308
           S+A P       +             Q   PP    P P   PPQG PP   PP+G    
Sbjct: 360 SDAAPS-ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGY--- 415

Query: 309 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 348
                             P    PPPQG+PPQ  PP+  P
Sbjct: 416 -----------------PPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 193 WTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEA 252
           W      +   ++E D       P        P     Q      M + +          
Sbjct: 332 WVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP- 390

Query: 253 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 301
                PP    PPQG PP G P Q   P    P P   PPQG PP  PP
Sbjct: 391 -QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 23/90 (25%), Positives = 25/90 (27%), Gaps = 18/90 (20%)

Query: 261 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 320
           P      A P     Q +                PP    PP                 +
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP----------------PQ 398

Query: 321 TEPQVGPPPPVPPPQGSPPQ--RPPPSRHP 348
             P  G PP   PPQG PPQ   PPP   P
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAP 428

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 11/84 (13%), Positives = 21/84 (25%)

Query: 271 PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPP 330
           P          P      +P PQ P PP      + + + +  +     + + +      
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 331 VPPPQGSPPQRPPPSRHPLLPPTK 354
            P     P  +            K
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKK 88

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 1/91 (1%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
           P          P PV       +             + +    +   L + P Q      
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAAL-GALALQPKQKQKRAQ 63

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 303
              ++  PP          P       P  +
Sbjct: 64  KKPKKTPPPKPKKTQKPKKPTQKKKSKPGKR 94

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 17/94 (18%), Positives = 24/94 (25%), Gaps = 9/94 (9%)

Query: 260 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ-GPPPPLPPPKGNLMYENLIVVAGGI 318
           +P     G      P+Q   P PQ P PP           L    G L  +         
Sbjct: 4   IPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQP-------- 55

Query: 319 SETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 352
            + + +    P   PP      + P         
Sbjct: 56  KQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKS 89

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 14/92 (15%), Positives = 18/92 (19%), Gaps = 17/92 (18%)

Query: 258 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG 317
            P P PP       GP   ++     G     P  +       P K              
Sbjct: 23  IPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTP------------ 70

Query: 318 ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPL 349
                P        P       +  P  R   
Sbjct: 71  -----PPKPKKTQKPKKPTQKKKSKPGKRMRN 97

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.8 bits (112), Expect = 9e-06
 Identities = 22/171 (12%), Positives = 35/171 (20%), Gaps = 16/171 (9%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
           P PP   P         P  P          L A   + +        P  P +    P 
Sbjct: 15  PGPPRIAPPKLACRTPSPARP---------ALRAPASATSGSRKRARPPAAPGRDQARPP 65

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYEN-------LIVVAGGISETEPQV 325
              +      +   P  P     P    P +              L       + +E   
Sbjct: 66  ARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELAS 125

Query: 326 GPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENL 376
                          +            +     E P G + P +  +  L
Sbjct: 126 CLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHAL 176

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 26/172 (15%), Positives = 39/172 (22%), Gaps = 9/172 (5%)

Query: 202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 261
            S +    +          +   PP  P +   R      L L        +    P  P
Sbjct: 30  PSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL------SVDEVSSPSTP 83

Query: 262 VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 321
             P   A P      ++  P  G  P +   Q                 L      +  +
Sbjct: 84  EAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKAS 143

Query: 322 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMY 373
                      P     P+ P   + P        A    P G  +PY    
Sbjct: 144 AQD--AGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP-GLVLPYKYQV 192

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 24/103 (23%), Positives = 30/103 (29%), Gaps = 4/103 (3%)

Query: 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENL---ILVAGGISEANPHVGPP 259
           +  +S SQ+   PPVPPP  H P     Q  + +L  +     I V      A       
Sbjct: 27  TLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAG 86

Query: 260 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 302
               P  GA  PG     E      P   V             
Sbjct: 87  -GTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEG 128

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 15/149 (10%), Positives = 24/149 (16%), Gaps = 19/149 (12%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
             P   PE      H P+                  +            P      PP P
Sbjct: 2   GSPAATPE--IRVNHEPE-----------------PAGGATPGATLPKSPSQLRKGPPVP 42

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 333
           P  +  P  +     +                           G ++       P     
Sbjct: 43  PPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAA 102

Query: 334 PQGSPPQRPPPSRHPLLPPTKITASVEGP 362
            + +    P             T      
Sbjct: 103 SEAASSSLPAVVVETFPATVNGTVEGGSG 131

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 20/151 (13%), Positives = 25/151 (16%), Gaps = 15/151 (9%)

Query: 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 272
           P P      G   P  P Q   +                    +                
Sbjct: 16  PEPAGGATPGATLPKSPSQLR-KGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTT 74

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 332
           P    E     G   P    Q P                       S + P V       
Sbjct: 75  PSQPAEASEVAGGTQPAAGAQEPGETAASEAA--------------SSSLPAVVVETFPA 120

Query: 333 PPQGSPPQRPPPSRHPLLPPTKITASVEGPY 363
              G+        R  L P        +  Y
Sbjct: 121 TVNGTVEGGSGAGRLDLPPGFMFKVQAQHDY 151

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 13/99 (13%), Positives = 19/99 (19%), Gaps = 13/99 (13%)

Query: 249 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 308
           ++  N        +   +         + +  PP G      P  G      P       
Sbjct: 144 VTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPG------ 197

Query: 309 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 347
                               P  PPP     Q      H
Sbjct: 198 -------AVPGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 15/58 (25%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 246 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG-PPPPLPPP 302
             G        GPP                +  G  P G   P P   G PPPP P  
Sbjct: 164 QSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAG 221

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 24/134 (17%), Positives = 28/134 (20%), Gaps = 20/134 (14%)

Query: 207 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 266
           +     P    P    +PP      G              GG        G   P     
Sbjct: 14  TGGSRYPGQGSPGGNRYPPQGGGGWGQP-----------HGGGWGQPHGGGWGQPHGGGW 62

Query: 267 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 326
           G P  G   Q  G    G          P  P    K          VAG  +      G
Sbjct: 63  GQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKH---------VAGAAAAGAVVGG 113

Query: 327 PPPPVPPPQGSPPQ 340
               +     S P 
Sbjct: 114 LGGYMLGSAMSRPL 127

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 19/119 (15%), Positives = 25/119 (21%), Gaps = 10/119 (8%)

Query: 246 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGN 305
            GG         P    P     PP G     +        P       P          
Sbjct: 8   PGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH- 66

Query: 306 LMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364
                     GG  +     G        Q + P +P  +   +       A V G  G
Sbjct: 67  ---------GGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGG 116

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 21/97 (21%), Gaps = 2/97 (2%)

Query: 250 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL-MY 308
           +     +  P P PPP  A  PG                  P   P  P P   G    +
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGAT-PGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 309 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS 345
            +L       +                G+        
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 14/82 (17%), Positives = 24/82 (29%)

Query: 273 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 332
              +   P P     P    Q  P P      + + +    V+  +     +   P P P
Sbjct: 8   MLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRP 67

Query: 333 PPQGSPPQRPPPSRHPLLPPTK 354
           PP+        P +     P +
Sbjct: 68  PPRQKKQAPKQPPKPKKPKPQE 89

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 3/91 (3%)

Query: 214 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273
           P P             P      L  +   L     + +   +G       P+  PPP  
Sbjct: 15  PAPTAMWRPRRRRQAAPMPARNGLASQIQQLTT---AVSALVIGQATRPQNPRPRPPPRQ 71

Query: 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 304
             Q    PP+   P     +   P    P  
Sbjct: 72  KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.0 bits (107), Expect = 3e-05
 Identities = 23/153 (15%), Positives = 34/153 (22%), Gaps = 6/153 (3%)

Query: 187 IKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQ---GPVRNLMYENLI 243
           I                + E  S+           G      P          +   N  
Sbjct: 338 IGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNY 397

Query: 244 LVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ--EEGPPPQGPHPPVPPPQGP-PPPLP 300
           +  G  S  N      +PV P +       P          +  + P    + P PP  P
Sbjct: 398 VTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKP 457

Query: 301 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 333
                  YE    +         +  P PP   
Sbjct: 458 TAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.9 bits (104), Expect = 7e-05
 Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 17/123 (13%)

Query: 181 YHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHP--PQGPVRNLM 238
           ++ +  IK+ G           + +       P  P         P       G +R   
Sbjct: 383 WYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIR--- 439

Query: 239 YENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPP 298
                      +   P V    P PP +   P  P  + E P    P  P    + P PP
Sbjct: 440 -----------AVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKE-PTPP 487

Query: 299 LPP 301
              
Sbjct: 488 TRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 269 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 328
           P     +         P   +P   G               N  + A       P+V   
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRA----VNVPKVTKE 449

Query: 329 PPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG----PYGHEVPYH 370
            P PP + + P +P       L P  +  + E     P   E  +H
Sbjct: 450 KPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHHH 495

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 11/164 (6%), Positives = 25/164 (15%), Gaps = 28/164 (17%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271
           G    +   E         +                     +              A   
Sbjct: 31  GANTELVSGESEHSTNEADKQN----------------EGEHARENKLEKAEGVATASET 74

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
             P   E    +                   +               +E +P+       
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETP------------SAEAKPKSDKETEA 122

Query: 332 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYEN 375
            P   +      P+        ++   V       +    +  N
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFN 166

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 12/118 (10%), Positives = 21/118 (17%), Gaps = 12/118 (10%)

Query: 251 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYEN 310
           E     G    VP   GA       + E    +                           
Sbjct: 15  ENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG------- 67

Query: 311 LIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 368
              VA       P           + +   +P           +  ++   P   +  
Sbjct: 68  ---VATASETASPASNEAATTETAEAASAAKPEEKASE--VVAETPSAEAKPKSDKET 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 57/397 (14%), Positives = 102/397 (25%), Gaps = 141/397 (35%)

Query: 321 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVA 380
            + QV     V         R  P         K+  ++           L     +L+ 
Sbjct: 121 NDNQVFAKYNVS--------RLQPY-------LKLRQAL---------LELRPAKNVLID 156

Query: 381 GGIGISPFLAILSDILHRINEGKSCLPRNVL------------IVWA-VKKSNE----LS 423
           G +G                 GK+ +  +V             I W  +K  N     L 
Sbjct: 157 GVLGS----------------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 424 LLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLV 483
           +L     +    + S   +                + EL + + S  Y       + VL 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHS-----IQAELRRLLKSKPYEN----CLLVL- 250

Query: 484 GTGNNVWSGLYVISSTVGFIILV---------ALLNILYVNPFNIHSWWYKGL------- 527
               NV +     +  +   IL+          L      +    H      L       
Sbjct: 251 ---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKS 305

Query: 528 LFL-------------ACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV 574
           L L                     +   ++I             E+ +D     DN ++V
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL---SIIA------------ESIRDGLATWDNWKHV 350

Query: 575 GTMAHNDIRKKDTKSSTNILYGS--RPDFKE--IFGSTSK--------KWGHVDVGVIVC 622
                  I     +SS N+L  +  R  F    +F  ++          W  V       
Sbjct: 351 NCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------ 400

Query: 623 GPPSLQSSVAKEIRSHSLM-RECHDPIFHFHSHSFDL 658
              S    V  ++  +SL+ ++  +      S   +L
Sbjct: 401 --KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 18/171 (10%), Positives = 31/171 (18%), Gaps = 25/171 (14%)

Query: 212 GPPPPVPPPEGHPPPVHPPQGPVRNL------------------MYENLILVAGGISEAN 253
           G      P +      +        L                  M   L  V   +   +
Sbjct: 278 GRYVDGLPEDDPVLKTYDS---YGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQD 334

Query: 254 PHVGPP----LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE 309
             V  P    +  P              +       H            L  P  +    
Sbjct: 335 TGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDV 394

Query: 310 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360
              V+   +     Q                    S    LP  ++ A ++
Sbjct: 395 AASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD 445

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286

 Score = 43.0 bits (99), Expect = 2e-04
 Identities = 16/170 (9%), Positives = 34/170 (20%), Gaps = 5/170 (2%)

Query: 184 SVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLI 243
             L  +   W + L +  ++    D+Q                +  P         +   
Sbjct: 33  QTLQDLKNIWQKKLTETKVTTFSWDNQFNEGNINGVQNDLNFNLATPGVNSSEFNIKEEN 92

Query: 244 LVAGGISEANPHVGPPLP-----VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPP 298
               G+   N +    +P                           G        Q     
Sbjct: 93  TGNEGLILPNINSNNNIPHSGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEV 152

Query: 299 LPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 348
            P  +  +   N+  V     E+E +          +    +        
Sbjct: 153 KPEIELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKL 202

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 8/103 (7%)

Query: 245 VAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 304
                +    + GP  P PP  GA P G P  ++   P+ P PP P              
Sbjct: 11  PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATL 70

Query: 305 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 347
                +         + E         PPP G+   +    R 
Sbjct: 71  REHLRD--------IKAENTDANFYVCPPPTGATVVQFEQPRR 105

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 418
           V+ P+G           +IL+AGG G S   +IL   L R         R++ I W  ++
Sbjct: 88  VDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALAR------NPNRDITIYWGGRE 141

Query: 419 SNEL 422
              L
Sbjct: 142 EQHL 145

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 13/138 (9%), Positives = 26/138 (18%), Gaps = 22/138 (15%)

Query: 242 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 301
           + L A G                 +         + +   P  P               P
Sbjct: 74  ITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMP 133

Query: 302 --------------------PKGNLMYENLI--VVAGGISETEPQVGPPPPVPPPQGSPP 339
                                 G ++ E++   +  G             P      +  
Sbjct: 134 SVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTE 193

Query: 340 QRPPPSRHPLLPPTKITA 357
              P +R  +    +  A
Sbjct: 194 GEFPETREKMSGIRRAIA 211

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 12/92 (13%), Positives = 17/92 (18%), Gaps = 12/92 (13%)

Query: 257 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 316
                         PG     + P               P   P  +             
Sbjct: 238 LDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTR----------R 287

Query: 317 GISETEPQVGPPPPV--PPPQGSPPQRPPPSR 346
             +E+   V  P  V       S  + P  S 
Sbjct: 288 SETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 11/98 (11%), Positives = 19/98 (19%), Gaps = 19/98 (19%)

Query: 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 331
                 +          V P + P                            Q     P 
Sbjct: 238 LDERSYQRAVITNRPGSVSPIKSPTSNFTTNT-------------------TQSVGSVPF 278

Query: 332 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPY 369
             P     +    S +P+  P  +         ++ PY
Sbjct: 279 SAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPY 316

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 11/66 (16%)

Query: 359 VEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 416
             GP+G    ++L  +   ++++AGG GI+PFL++L  +  + +E        V +V+ V
Sbjct: 197 FTGPFGS---FYLRDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE------HPVRLVFGV 247

Query: 417 KKSNEL 422
            +  +L
Sbjct: 248 TQDCDL 253

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 328 PPPVPPPQGSPPQRPPPSR-----HPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGG 382
            PP             P         L P  K+   + GPYG +         ++ + GG
Sbjct: 109 TPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVM--MSGPYG-DFHIQDTDAEMLYIGGG 165

Query: 383 IGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNE 421
            G++P  A +  +   +  G     R V   +  +  NE
Sbjct: 166 AGMAPLRAQILHLFRTLKTG-----RKVSYWYGARSKNE 199

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 26/165 (15%), Positives = 39/165 (23%), Gaps = 17/165 (10%)

Query: 204 KSESDSQVGPPPPVPPPEG------HPPPVHPPQGPVRN--LMYENLILVAGGISEANPH 255
           K E+ SQV    P            H      P          Y+    V   IS   P 
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 256 VGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 315
            G           P      +   P    P   +            P       +LI+  
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSP---ASIPHLILE- 118

Query: 316 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360
             + + EP     P V     +  Q+   +R      +      +
Sbjct: 119 --LLKCEP---DEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCK 158

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 16/90 (17%)

Query: 374 ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 433
           E L ++A G  I P+L+IL               +N+++V A + + +LS     Y   +
Sbjct: 107 ETLWMLATGTAIGPYLSILRLGKDLDRF------KNLVLVHAARYAADLS-----YLPLM 155

Query: 434 CPF---FSDKLNLETFIYVTRETEPPLEEG 460
                 +  KL ++T   V+RET      G
Sbjct: 156 QELEKRYEGKLRIQTV--VSRETAAGSLTG 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	658
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	99.92
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	99.92
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.91
1tvc_A	250	Methane monooxygenase component C, methane monooxy	99.91
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	99.9
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	99.9
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	99.89
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	99.89
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.88
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	99.88
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.88
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	99.88
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.87
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.87
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.87
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.87
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	99.87
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.86
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	99.85
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	99.85
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.84
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	99.84
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	99.83
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.82
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	99.8
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.63
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.5
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.46
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.36
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.28
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.25
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.17
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.15
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.11
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.05
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	98.8
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	80.92

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=99.92  E-value=2.8e-24  Score=217.10  Aligned_cols=166  Identities=16%  Similarity=0.205  Sum_probs=132.2

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCC--CcceeEEeeeCCCCCCCeEEEEEEEc------
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSW--LQWHPFSVSSSPLEGKYHSSVLIKVL------  190 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~--~q~HPFTIaS~p~~~~~~lsl~IR~~------  190 (658)
                      +.++|++++.++++++++++..+.   ...|+||||++|.++..+.  +++|||||+|.+.+  +.++|+||..      
T Consensus         4 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~~~i~vk~~~~~~~~   81 (243)
T 4eh1_A            4 RTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG--REYRISVKREGVGSDN   81 (243)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS--SCEEEEEECTTTTSSS
T ss_pred             EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCCCC--CeEEEEEEEeecCCCC
Confidence            467899999999999999998764   3689999999999985433  37899999999864  7899999999      


Q ss_pred             -CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCC
Q 006160          191 -GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP  269 (658)
Q Consensus       191 -G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~  269 (658)
                       |.+|+.|++.+..                                                                  
T Consensus        82 ~G~~S~~l~~~l~~------------------------------------------------------------------   95 (243)
T 4eh1_A           82 PGLVSHYLHNNVKV------------------------------------------------------------------   95 (243)
T ss_dssp             CCHHHHHHHHHCCT------------------------------------------------------------------
T ss_pred             CCeehhHHHhcCCC------------------------------------------------------------------
Confidence             8999998765311                                                                  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPL  349 (658)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (658)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (243)
T 4eh1_A           96 --------------------------------------------------------------------------------   95 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHH
Q 006160          350 LPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY  429 (658)
Q Consensus       350 ~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l  429 (658)
                        ++  ++.|+||||..... ..+++++|||||+||||++++++++..+..      .+ ++|+|++|+.+++.+.+++.
T Consensus        96 --G~--~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~------~~-v~l~~~~r~~~~~~~~~el~  163 (243)
T 4eh1_A           96 --GD--SVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK------SG-VTYLYACNSAKEHTFAQETA  163 (243)
T ss_dssp             --TC--EEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC------CS-EEEEEEESSGGGCTTHHHHH
T ss_pred             --CC--EEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC------Ce-EEEEEEeCChhhhhHHHHHH
Confidence              02  47899999997655 678999999999999999999999987541      23 99999999999987766553


Q ss_pred             HhccCCccCCCCceEEEEEEcCCC
Q 006160          430 KESICPFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       430 ~ell~~~~~~~~~l~I~iyVT~~~  453 (658)
                       ++.    .+. +++++++++++.
T Consensus       164 -~l~----~~~-~~~~~~~~s~~~  181 (243)
T 4eh1_A          164 -QLI----AQQ-GWMQQVWYRDES  181 (243)
T ss_dssp             -HHH----HHH-TCEEEEEESSCC
T ss_pred             -HHH----HhC-CeEEEEEEccCC
Confidence             322    122 678888887653

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=99.92  E-value=1.2e-23  Score=211.26  Aligned_cols=166  Identities=22%  Similarity=0.274  Sum_probs=128.8

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      .++|.+++.++++++++++..+..+.|+||||++|+++.   .++|||||+|.+.+ ++.++|+||..  |++|+++.+.
T Consensus         4 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~~~~~   79 (232)
T 1qfj_A            4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPDE-KGFIELHIGASEINLYAKAVMDR   79 (232)
T ss_dssp             EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTTS-TTCEEEEEC------CCHHHHHH
T ss_pred             EEEEEEEEecCCCEEEEEEecCCCCCcCCCCEEEEECCC---CceeeeecCCCCCC-CCcEEEEEEEccCCchhHHHHHh
Confidence            568889999999999999987777899999999999985   58899999999864 47899999997  4577776665


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  280 (658)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      ++..                                                                            
T Consensus        80 l~~G----------------------------------------------------------------------------   83 (232)
T 1qfj_A           80 ILKD----------------------------------------------------------------------------   83 (232)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            5321                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160          281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve  360 (658)
                                                                                              +  ++.|+
T Consensus        84 ------------------------------------------------------------------------d--~v~v~   89 (232)
T 1qfj_A           84 ------------------------------------------------------------------------H--QIVVD   89 (232)
T ss_dssp             ------------------------------------------------------------------------S--EEEEE
T ss_pred             ------------------------------------------------------------------------C--EEEEe
Confidence                                                                                    1  47799


Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      ||||........+++++|||||+||||+++++++++.+.      ..++++|+|++|+.+++.+.+++ +++.    .+.
T Consensus        90 gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~  158 (232)
T 1qfj_A           90 IPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN------PNRDITIYWGGREEQHLYDLCEL-EALS----LKH  158 (232)
T ss_dssp             EEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC------TTCCEEEEEEESSGGGCTTHHHH-HHHH----HHC
T ss_pred             CCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHHhhhHHHH-HHHH----HHC
Confidence            999997654345789999999999999999999998754      13679999999999999665554 3321    123


Q ss_pred             CceEEEEEEcCCC
Q 006160          441 LNLETFIYVTRET  453 (658)
Q Consensus       441 ~~l~I~iyVT~~~  453 (658)
                      .+++++.++++++
T Consensus       159 ~~~~~~~~~s~~~  171 (232)
T 1qfj_A          159 PGLQVVPVVEQPE  171 (232)
T ss_dssp             TTEEEEEEESSCC
T ss_pred             CCeEEEEEEcCCC
Confidence            4688888787653

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=99.91  E-value=3.2e-24  Score=220.69  Aligned_cols=149  Identities=19%  Similarity=0.242  Sum_probs=123.6

Q ss_pred             cceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          121 RRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       121 ~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      ...+++++++.+++++++++++.+..+.|+||||++|+++..+..++|||||+|.+.+  +.++|+||..  |.+|+.|.
T Consensus        19 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~--~~~~~~v~~~~~G~~s~~l~   96 (271)
T 4fk8_A           19 FDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYE--EHLEFFSIKVQNGPLTSRLQ   96 (271)
T ss_dssp             EEEEEEEEEEEEETTEEEEEECCCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SSEEEEEECCTTCTTHHHHT
T ss_pred             ceeEEEEEEEEcCCCEEEEEEEcCCCCCcCCCCEEEEEccCCCceeeeeEeccCCCCC--CcEEEEEEEECCCchhhHHh
Confidence            3467899999999999999999888889999999999999767778999999999864  6899999998  99998872


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  278 (658)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (658)
                      + +   .                                                                         
T Consensus        97 ~-l---~-------------------------------------------------------------------------   99 (271)
T 4fk8_A           97 H-L---K-------------------------------------------------------------------------   99 (271)
T ss_dssp             T-C---C-------------------------------------------------------------------------
T ss_pred             c-C---C-------------------------------------------------------------------------
Confidence            1 1   0                                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160          279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  358 (658)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  358 (658)
                                                                                              +++  ++.
T Consensus       100 ------------------------------------------------------------------------~Gd--~v~  105 (271)
T 4fk8_A          100 ------------------------------------------------------------------------VGD--PVL  105 (271)
T ss_dssp             ------------------------------------------------------------------------TTC--EEE
T ss_pred             ------------------------------------------------------------------------CCC--EEE
Confidence                                                                                    012  478


Q ss_pred             EE-CccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          359 VE-GPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       359 ve-GPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      |+ ||||...... ..+++++|||||+||||++++++++..+..      .++++|+|++|+.+++.+.+++
T Consensus       106 v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~el  171 (271)
T 4fk8_A          106 IGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER------FDKVVLTHTCRLKGELAYMDYI  171 (271)
T ss_dssp             EESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH------CSEEEEEECCCSHHHHHHHHHH
T ss_pred             EecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHHHHH
Confidence            99 9999876542 368999999999999999999999887542      3589999999999998766554

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=99.91  E-value=1.7e-23  Score=212.85  Aligned_cols=167  Identities=22%  Similarity=0.305  Sum_probs=131.1

Q ss_pred             ceEEEEEEEEecCceEEEEEeC-C-C----CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--Cch
Q 006160          122 RTVDVLSASCLPCGTVELVLSK-P-A----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  193 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~-p-~----~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~  193 (658)
                      ..++|++++.++++++++++.. + .    .+.|+||||++|+++.  ..++|||||+|.+.+ ++.++|+||..  |.+
T Consensus        11 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~-~~~l~i~vk~~~~G~~   87 (250)
T 1tvc_A           11 FEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG--TDVSRSYSPANLPNP-EGRLEFLIRVLPEGRF   87 (250)
T ss_dssp             EEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS--CSSSEEECCBCCSSS-SCCEEEEECCCTTSSS
T ss_pred             EEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCC--CccccccccCCCCCC-CCeEEEEEEECCCCCc
Confidence            3567788888999999999987 6 4    5789999999999975  368999999999864 47899999999  999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          194 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP  273 (658)
Q Consensus       194 T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  273 (658)
                      |+.|++.+..                                                                      
T Consensus        88 s~~l~~~l~~----------------------------------------------------------------------   97 (250)
T 1tvc_A           88 SDYLRNDARV----------------------------------------------------------------------   97 (250)
T ss_dssp             HHHHHHHSSS----------------------------------------------------------------------
T ss_pred             hHHHHhcCCC----------------------------------------------------------------------
Confidence            9998754311                                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT  353 (658)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (658)
                                                                                                    ++
T Consensus        98 ------------------------------------------------------------------------------Gd   99 (250)
T 1tvc_A           98 ------------------------------------------------------------------------------GQ   99 (250)
T ss_dssp             ------------------------------------------------------------------------------SS
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          02


Q ss_pred             eeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160          354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  433 (658)
Q Consensus       354 ~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell  433 (658)
                        ++.|+||||........+++++|||||+||||++++++++..+.      ..++++|+|++|+.+++.+.+++ +++.
T Consensus       100 --~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l~  170 (250)
T 1tvc_A          100 --VLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT------APNETRIYFGVNTEPELFYIDEL-KSLE  170 (250)
T ss_dssp             --EEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT------CCSCEEEEEECSSSTTCCCHHHH-HHHH
T ss_pred             --EEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC------CCceEEEEEEeCCHHHhhhHHHH-HHHH
Confidence              47799999997654345689999999999999999999998754      13579999999999998555444 3331


Q ss_pred             CCccCCCCceEEEEEEcCC
Q 006160          434 CPFFSDKLNLETFIYVTRE  452 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~  452 (658)
                          ....+++++.++|++
T Consensus       171 ----~~~~~~~~~~~~s~~  185 (250)
T 1tvc_A          171 ----RSMRNLTVKACVWHP  185 (250)
T ss_dssp             ----HHSSSCEEEECCSSC
T ss_pred             ----HhCCCeEEEEEeccC
Confidence                123457777777764

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=99.90  E-value=2.9e-23  Score=219.46  Aligned_cols=175  Identities=16%  Similarity=0.121  Sum_probs=131.5

Q ss_pred             eEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCCC----------------------------------
Q 006160          123 TVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS----------------------------------  163 (658)
Q Consensus       123 ~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is----------------------------------  163 (658)
                      .++|++++.+.     +++++|++..+..+.|.+|||+.|.+|...                                  
T Consensus        17 ~~~v~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~g   96 (316)
T 3jqq_A           17 KCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKK   96 (316)
T ss_dssp             EEEEEEEEECSCTTCSCCEEEEEEECTTCCCCCTTCEEEECTTCC-----------------------------------
T ss_pred             EEEEEeeEEccCCCCCCceEEEEEeCCCCcceecCcEeEEECCCcccccccccccccccccccccccccccccccccCCC
Confidence            56788888875     789999999988899999999999998653                                  


Q ss_pred             CCcceeEEeeeCCCCCCCeEEEEEEEc--------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          164 WLQWHPFSVSSSPLEGKYHSSVLIKVL--------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHP  229 (658)
Q Consensus       164 ~~q~HPFTIaS~p~~~~~~lsl~IR~~--------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (658)
                      ..++|||||+|+|.+  +.++|+||+.              |.+|+.|.+ +.                           
T Consensus        97 ~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~-l~---------------------------  146 (316)
T 3jqq_A           97 QRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKN-LK---------------------------  146 (316)
T ss_dssp             CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHT-CC---------------------------
T ss_pred             cccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhh-CC---------------------------
Confidence            478999999999974  6899999975              888988721 10                           


Q ss_pred             CCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 006160          230 PQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE  309 (658)
Q Consensus       230 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (658)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (316)
T 3jqq_A          147 --------------------------------------------------------------------------------  146 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCcc---ccceEEEEEcCcchh
Q 006160          310 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHL---MYENLILVAGGIGIS  386 (658)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~---~~~~vvlVAGGiGIT  386 (658)
                                                               +++  +|.|+||||.+.....   ..+++||||||+|||
T Consensus       147 -----------------------------------------~Gd--~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIa  183 (316)
T 3jqq_A          147 -----------------------------------------IND--DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGIS  183 (316)
T ss_dssp             -----------------------------------------TTC--EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGH
T ss_pred             -----------------------------------------CCC--EEEEEecCCceEcCCcccCCCCcEEEEeCCceec
Confidence                                                     012  4778999998644322   378999999999999


Q ss_pred             hhHHHHHHHHHhhcc----CCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCC
Q 006160          387 PFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       387 P~lsil~~ll~~~~~----~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~  454 (658)
                      |+++++++++.+...    ......++++|+|++|+.+++.+.++ ++++..   ....+++++.++|++++
T Consensus       184 P~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~e-L~~l~~---~~~~~~~~~~~~s~~~~  251 (316)
T 3jqq_A          184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNE-LEYFQK---MYPNNINIHYVFSYKQN  251 (316)
T ss_dssp             HHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHH-HHHHHH---HCTTTEEEEEEEGGGCC
T ss_pred             hHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHH-HHHHHH---hCCCcEEEEEEECCCcc
Confidence            999999999865421    00112468999999999999855444 444321   11136899999998743

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=99.90  E-value=2.6e-22  Score=208.05  Aligned_cols=169  Identities=17%  Similarity=0.290  Sum_probs=130.5

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCC-----------------------------CCCcceeE
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVREL-----------------------------SWLQWHPF  170 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~i-----------------------------s~~q~HPF  170 (658)
                      ..++|++++.++++++++++..+.  .+.|+||||++|.+|..                             ...++|||
T Consensus        10 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~y   89 (290)
T 2r6h_A           10 WECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAY   89 (290)
T ss_dssp             EEEEEEEEEESSSSEEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEE
T ss_pred             EEEEEEEeeecCCCeEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceee
Confidence            357889999999999999999875  57899999999999852                             35689999


Q ss_pred             EeeeCCCCCCCeEEEEEEE-----------------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          171 SVSSSPLEGKYHSSVLIKV-----------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGP  233 (658)
Q Consensus       171 TIaS~p~~~~~~lsl~IR~-----------------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (658)
                      ||+|.+.+ .+.++|+||.                 .|.+|+.|.+ +.                               
T Consensus        90 Si~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~-l~-------------------------------  136 (290)
T 2r6h_A           90 SMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFS-LK-------------------------------  136 (290)
T ss_dssp             ECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTT-CC-------------------------------
T ss_pred             eccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhc-CC-------------------------------
Confidence            99999864 4799999996                 3667777643 10                               


Q ss_pred             cccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhh
Q 006160          234 VRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV  313 (658)
Q Consensus       234 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (658)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (290)
T 2r6h_A          137 --------------------------------------------------------------------------------  136 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHH
Q 006160          314 VAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILS  393 (658)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~  393 (658)
                                                           +++  ++.|+||||.+... ..++++||||||+||||++++++
T Consensus       137 -------------------------------------~Gd--~v~v~gP~G~f~~~-~~~~~~vliagGtGitP~~s~l~  176 (290)
T 2r6h_A          137 -------------------------------------PGD--KVMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQIL  176 (290)
T ss_dssp             -------------------------------------TTC--EEEEEEEECCCCCC-SSSCEEEEEEEGGGHHHHHHHHH
T ss_pred             -------------------------------------CCC--EEEEEecccCCcCC-CCCCeEEEEECccCHHHHHHHHH
Confidence                                                 012  47799999997654 46789999999999999999999


Q ss_pred             HHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCC
Q 006160          394 DILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       394 ~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~  453 (658)
                      +++++..     ..++++|+|++|+.+++.+.+++ +++.    ....+++++.+++++.
T Consensus       177 ~~~~~~~-----~~~~v~l~~~~r~~~d~~~~~el-~~l~----~~~~~~~~~~~~s~~~  226 (290)
T 2r6h_A          177 HLFRTLK-----TGRKVSYWYGARSKNEIFYEEDF-REIE----REFPNFKFHIALSDPQ  226 (290)
T ss_dssp             HHHHTSC-----CCSCEEEEEEESSGGGCCSHHHH-HHHH----HHCTTEEEEEEESSCC
T ss_pred             HHHHhcC-----CCCcEEEEEEcCCHHHHHHHHHH-HHHH----HhCCCeEEEEEEccCC
Confidence            9887542     23689999999999998555544 3321    1234688888888753

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=99.89  E-value=1.3e-21  Score=212.66  Aligned_cols=169  Identities=14%  Similarity=0.217  Sum_probs=129.5

Q ss_pred             ccceEEEEEEEEecCceEEEEEeCCC--CC-----CcCCCcEEEEEeC----CCCCCcceeEEeeeCCCCCCCeEEEEEE
Q 006160          120 SRRTVDVLSASCLPCGTVELVLSKPA--NL-----RYNALSFFFLQVR----ELSWLQWHPFSVSSSPLEGKYHSSVLIK  188 (658)
Q Consensus       120 ~~~~~~v~sv~~l~~~v~~l~i~~p~--~~-----~~~PGQ~v~L~vp----~is~~q~HPFTIaS~p~~~~~~lsl~IR  188 (658)
                      .++.++|++.+.++++++++++..+.  .+     .|+||||+.|+++    +....++|||||+|.|.+  +.++|+||
T Consensus       148 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~--~~~~i~Vk  225 (399)
T 4g1v_A          148 GWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTK--NGLRFAVK  225 (399)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT--TCEEEEEE
T ss_pred             cceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC--CeEEEEEE
Confidence            34578999999999999999998664  23     8999999999974    334578999999999864  78999999


Q ss_pred             E--------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCC
Q 006160          189 V--------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPL  260 (658)
Q Consensus       189 ~--------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~  260 (658)
                      .        .|.+|+.|++.+..                                                         
T Consensus       226 ~~~~~~~~~~G~~S~~L~~~l~~---------------------------------------------------------  248 (399)
T 4g1v_A          226 MEAARENFPAGLVSEYLHKDAKV---------------------------------------------------------  248 (399)
T ss_dssp             CCCCBTTBCCCHHHHHHHHTCCT---------------------------------------------------------
T ss_pred             eccCCCCCCCCEehhHHHhCCCC---------------------------------------------------------
Confidence            9        57788888654311                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCC
Q 006160          261 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQ  340 (658)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (658)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (399)
T 4g1v_A          249 --------------------------------------------------------------------------------  248 (399)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCeeEEEEECccCCCccCcc----ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 006160          341 RPPPSRHPLLPPTKITASVEGPYGHEVPYHL----MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV  416 (658)
Q Consensus       341 ~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~----~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~v  416 (658)
                                 |+  ++.|.||||.+..+..    .++++||||||+||||+++++++++++..      .++|+|+|++
T Consensus       249 -----------Gd--~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~------~~~v~l~~~~  309 (399)
T 4g1v_A          249 -----------GD--EIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP------NRPIYWIQSS  309 (399)
T ss_dssp             -----------TC--EEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT------TSCEEEEEEE
T ss_pred             -----------CC--EEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC------CCCEEEEEec
Confidence                       12  4779999999654433    57899999999999999999999987642      3689999999


Q ss_pred             ccCcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160          417 KKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  451 (658)
Q Consensus       417 R~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~  451 (658)
                      |+.+++.+.+++ +++.    .+..++++++++++
T Consensus       310 r~~~~~~~~~el-~~l~----~~~~~~~~~~~~s~  339 (399)
T 4g1v_A          310 YDEKTQAFKKHV-DELL----AECANVDKIIVHTD  339 (399)
T ss_dssp             SSSTTSTTHHHH-HHHH----TTCSSEEEEEEETT
T ss_pred             CCHHHhhhHHHH-HHHH----HhCCCcEEEEEEeC
Confidence            999998666554 3332    23345666666553

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=99.89  E-value=4e-22  Score=202.03  Aligned_cols=168  Identities=22%  Similarity=0.186  Sum_probs=127.7

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  199 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~  199 (658)
                      ..++|++++.++++++++++. +..+.|+||||++|+++..+..++|||||+|.+.+  +.++|+||..  |.+|+.|.+
T Consensus         5 ~~~~V~~~~~~~~~~~~l~l~-~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~~~G~~s~~l~~   81 (248)
T 1fdr_A            5 VTGKVTKVQNWTDALFSLTVH-APVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTVPDGKLSPRLAA   81 (248)
T ss_dssp             EEEEEEEEEECSSSEEEEEEE-CCCCCCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECCTTCSSHHHHHT
T ss_pred             EEEEEEEEEEcCCCEEEEEEe-CCCCCcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEeCCCchhhHHHh
Confidence            357889999999999999996 55689999999999999766788999999999864  7899999998  999998852


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  279 (658)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (658)
                       +   .                                                                          
T Consensus        82 -l---~--------------------------------------------------------------------------   83 (248)
T 1fdr_A           82 -L---K--------------------------------------------------------------------------   83 (248)
T ss_dssp             -C---C--------------------------------------------------------------------------
T ss_pred             -C---C--------------------------------------------------------------------------
Confidence             1   0                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160          280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  359 (658)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  359 (658)
                                                                                             +++  ++.|
T Consensus        84 -----------------------------------------------------------------------~Gd--~v~v   90 (248)
T 1fdr_A           84 -----------------------------------------------------------------------PGD--EVQV   90 (248)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CcC--EEEE
Confidence                                                                                   012  4678


Q ss_pred             E-CccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160          360 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  437 (658)
Q Consensus       360 e-GPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~  437 (658)
                      + ||||.+..... ++++++|||||+||||++++++++..+.      ..++++|+|++|+.+++.+.+++ +++..   
T Consensus        91 ~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l~~---  160 (248)
T 1fdr_A           91 VSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD------RFKNLVLVHAARYAADLSYLPLM-QELEK---  160 (248)
T ss_dssp             ESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT------TCSEEEEEEEESSGGGCTTHHHH-HHHHH---
T ss_pred             ecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC------CCCcEEEEEEcCCHHHhhHHHHH-HHHHH---
Confidence            8 99998543222 3789999999999999999999875432      24689999999999998655544 33211   


Q ss_pred             CCCCceEEEEEEcCCC
Q 006160          438 SDKLNLETFIYVTRET  453 (658)
Q Consensus       438 ~~~~~l~I~iyVT~~~  453 (658)
                      ....+++++.++|+++
T Consensus       161 ~~~~~~~~~~~~s~~~  176 (248)
T 1fdr_A          161 RYEGKLRIQTVVSRET  176 (248)
T ss_dssp             HTTTSEEEEEEESSSC
T ss_pred             hCcCcEEEEEEEecCC
Confidence            1124688888888764

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.88  E-value=9.7e-23  Score=196.59  Aligned_cols=182  Identities=23%  Similarity=0.443  Sum_probs=123.1

Q ss_pred             EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccC-CCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160          358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEG-KSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  436 (658)
Q Consensus       358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~-~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~  436 (658)
                      .|+||||.+..+..+++++||||||+||||+++++++++++.+.+ .....++|+|+|++|+.+++.|+.+.+.++....
T Consensus         2 ~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~~   81 (186)
T 3a1f_A            2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQM   81 (186)
T ss_dssp             CTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHHH
T ss_pred             eEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHHH
Confidence            479999997654457899999999999999999999998764221 0113578999999999999998887776543110


Q ss_pred             c--CCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheec
Q 006160          437 F--SDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYV  514 (658)
Q Consensus       437 ~--~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i  514 (658)
                      .  ....++++++|+|++.+..  ..   ..                                               ++
T Consensus        82 ~~~~~~~~~~~~~~~t~~~~~~--~~---~~-----------------------------------------------~~  109 (186)
T 3a1f_A           82 QERNNAGFLSYNIYLTGWDESQ--AN---HF-----------------------------------------------AV  109 (186)
T ss_dssp             HHTTCTTSEEEEEEETTC--------------------------------------------------------------
T ss_pred             hhccCCCeEEEEEEEcCCCCCc--cc---ce-----------------------------------------------ee
Confidence            0  0123699999999864310  00   00                                               00


Q ss_pred             CCCCCcchhhHHHHHHHHHhhheeeccceeeeeehhhhhhccccccCCCCccccccccccccccccccccccCcccceee
Q 006160          515 NPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNIL  594 (658)
Q Consensus       515 ~p~~~~~~~~~~~l~~~~~~~~v~i~g~~~~~~w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~  594 (658)
                                                      .   |.      ++  .+.                  .+++.  ..++
T Consensus       110 --------------------------------~---~~------~~--~~~------------------~~g~~--~~~~  126 (186)
T 3a1f_A          110 --------------------------------H---HD------EE--KDV------------------ITGLK--QKTL  126 (186)
T ss_dssp             ----------------------------------------------------------------------------CCEE
T ss_pred             --------------------------------c---cc------cc--ccc------------------CCCCc--cccc
Confidence                                            0   00      00  000                  01111  2456


Q ss_pred             cCCCCCHHHHHHhhhccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160          595 YGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF  656 (658)
Q Consensus       595 ~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF  656 (658)
                      + ||||++.+++++......++..|++|||++|.++|++.+.+.... ...+.+|+||+|+|
T Consensus       127 ~-gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~~v~~~l~~~g~~-~~~~~~~~~~~E~F  186 (186)
T 3a1f_A          127 Y-GRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSES-GPRGVHFIFNKENF  186 (186)
T ss_dssp             E-SCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHHHHHHHHHHTCCC-STTCCEEEEECCCC
T ss_pred             c-CCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHHHHHHHHHHhhcc-CCCCCEEEEEeccC
Confidence            7 899999999887654444689999999999999999999886642 12346799999999

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=99.88  E-value=8.7e-22  Score=206.82  Aligned_cols=213  Identities=15%  Similarity=0.104  Sum_probs=148.5

Q ss_pred             ceEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCCC------CCcceeEEeeeCCCC---CCCeEEEEE
Q 006160          122 RTVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS------WLQWHPFSVSSSPLE---GKYHSSVLI  187 (658)
Q Consensus       122 ~~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is------~~q~HPFTIaS~p~~---~~~~lsl~I  187 (658)
                      ..++|++++.++     ++++++++..+..+.|+||||++|+++..+      .+++|||||+|+|.+   +.+.++|+|
T Consensus        29 ~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~V  108 (311)
T 3lo8_A           29 FTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV  108 (311)
T ss_dssp             EEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEE
T ss_pred             eEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEE
Confidence            367889999998     899999999888899999999999998742      358999999999864   247899999


Q ss_pred             EEc---------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCC
Q 006160          188 KVL---------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEA  252 (658)
Q Consensus       188 R~~---------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~  252 (658)
                      |..               |.+|+.|.+ +..                                                 
T Consensus       109 k~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~-------------------------------------------------  138 (311)
T 3lo8_A          109 RRAVYYDPETGKEDPSKNGVCSNFLCN-SKP-------------------------------------------------  138 (311)
T ss_dssp             ECCCCCCTTTCCCCGGGSCHHHHHHHT-CCT-------------------------------------------------
T ss_pred             EEEEecccccCcCCcCCCCchhhHHhc-CCC-------------------------------------------------
Confidence            975               888888854 210                                                 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCC
Q 006160          253 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP  332 (658)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (658)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (311)
T 3lo8_A          139 --------------------------------------------------------------------------------  138 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCc--cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceE
Q 006160          333 PPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV  410 (658)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~--~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV  410 (658)
                                         +.  +|.|+||||..+...  ..++++||||||+||||+++++++++.+...+. ...+++
T Consensus       139 -------------------Gd--~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v  196 (311)
T 3lo8_A          139 -------------------GD--KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNY-RFGGLA  196 (311)
T ss_dssp             -------------------TC--EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTC-CCCSEE
T ss_pred             -------------------cC--EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccc-cCCCCE
Confidence                               12  477899999876432  367899999999999999999999986542111 113689


Q ss_pred             EEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCccccccccccccc----CCCCCCceeEeecCC
Q 006160          411 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY----PVPSGCAMSVLVGTG  486 (658)
Q Consensus       411 ~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~----P~~~d~~~~~v~Gp~  486 (658)
                      +|+|++|+.+++.+.+++. ++..   ....+++++.++|++...+.......+..+....    ....+.....+|||.
T Consensus       197 ~l~~g~r~~~d~~~~~el~-~l~~---~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~  272 (311)
T 3lo8_A          197 WLFLGVANSDSLLYDEEFT-SYLK---QYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK  272 (311)
T ss_dssp             EEEEEESSGGGCSSHHHHH-HHHH---HCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEECG
T ss_pred             EEEEecCChHHhhHHHHHH-HHHH---hCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECCH
Confidence            9999999999986665543 3321   1123689999999876422111111111111110    000145678999998


Q ss_pred             CchH
Q 006160          487 NNVW  490 (658)
Q Consensus       487 ~~~w  490 (658)
                      ..+-
T Consensus       273 ~m~~  276 (311)
T 3lo8_A          273 GMMP  276 (311)
T ss_dssp             GGHH
T ss_pred             HHHH
Confidence            6543

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.88  E-value=4.6e-21  Score=202.68  Aligned_cols=145  Identities=17%  Similarity=0.212  Sum_probs=118.1

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--Cc-hHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GE-WTE  195 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~-~T~  195 (658)
                      ...+|.+++.++++++++++..+..   ..|+||||++|+++..   ++|||||+|.+.+ .+.++|.||..  |. +|+
T Consensus         9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g---~~R~ySi~s~~~~-~~~l~i~Vk~~~~G~g~S~   84 (321)
T 2pia_A            9 LRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQE-RNRYVIAVKRDSNGRGGSI   84 (321)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTTC-CSEEEEEEECCTTSCSHHH
T ss_pred             EEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCC---CcEEEEeCCCCCC-CCeEEEEEEEecCCcchhH
Confidence            4678999999999999999998763   3899999999999852   8999999999864 47899999987  65 899


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          196 NLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL  275 (658)
Q Consensus       196 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (658)
                      .|++.++.                                                                        
T Consensus        85 ~L~~~l~~------------------------------------------------------------------------   92 (321)
T 2pia_A           85 SFIDDTSE------------------------------------------------------------------------   92 (321)
T ss_dssp             HHHHSCCT------------------------------------------------------------------------
T ss_pred             HHHhcCCC------------------------------------------------------------------------
Confidence            88654311                                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCee
Q 006160          276 QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI  355 (658)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (658)
                                                                                                  ++  
T Consensus        93 ----------------------------------------------------------------------------Gd--   94 (321)
T 2pia_A           93 ----------------------------------------------------------------------------GD--   94 (321)
T ss_dssp             ----------------------------------------------------------------------------TC--
T ss_pred             ----------------------------------------------------------------------------CC--
Confidence                                                                                        12  


Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      ++.|+||||.+... ..+++++|||||+||||++++++++..+.       .++++|+|++|+.+++.+.+++
T Consensus        95 ~v~v~gP~g~f~l~-~~~~~~vliagG~GItP~~s~l~~l~~~~-------~~~v~l~~~~r~~~~~~~~~el  159 (321)
T 2pia_A           95 AVEVSLPRNEFPLD-KRAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLTRDPEGTAFFDEL  159 (321)
T ss_dssp             EEEECCCBCCSCCC-TTCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEESCGGGCTTHHHH
T ss_pred             EEEEeCCccccccC-CCCCCEEEEEecccHhHHHHHHHHHHHcC-------CCcEEEEEEECChhhhHHHHHH
Confidence            47799999986443 34789999999999999999999998753       1589999999999998666554

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=99.88  E-value=2.5e-21  Score=203.62  Aligned_cols=210  Identities=19%  Similarity=0.188  Sum_probs=147.7

Q ss_pred             eEEEEEEEEecCc-----eEEEEEeCCCCCCcCCCcEEEEEeCCCC----CCcceeEEeeeCCCC---CCCeEEEEEEEc
Q 006160          123 TVDVLSASCLPCG-----TVELVLSKPANLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLE---GKYHSSVLIKVL  190 (658)
Q Consensus       123 ~~~v~sv~~l~~~-----v~~l~i~~p~~~~~~PGQ~v~L~vp~is----~~q~HPFTIaS~p~~---~~~~lsl~IR~~  190 (658)
                      .++|++++.+.++     ++++++..+..+.|+||||++|++|...    .+++|||||+|+|..   +.+.++|+||..
T Consensus        35 ~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~  114 (310)
T 3vo2_A           35 VGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  114 (310)
T ss_dssp             EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECC
T ss_pred             EEEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEE
Confidence            5778888888776     9999999877789999999999998643    247899999999863   247999999985


Q ss_pred             -----------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCC
Q 006160          191 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP  259 (658)
Q Consensus       191 -----------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~  259 (658)
                                 |.+|+.|.+ +..                                                        
T Consensus       115 ~~~~~~~~~~~G~~S~~L~~-l~~--------------------------------------------------------  137 (310)
T 3vo2_A          115 VYTNDQGEIVKGVCSNFLCD-LKP--------------------------------------------------------  137 (310)
T ss_dssp             EEECTTSCEEECHHHHHHHT-CCT--------------------------------------------------------
T ss_pred             EeccCCCCcCCcchhhHHhc-CCC--------------------------------------------------------
Confidence                       889988854 210                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCC
Q 006160          260 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP  339 (658)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (658)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (310)
T 3vo2_A          138 --------------------------------------------------------------------------------  137 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc
Q 006160          340 QRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK  418 (658)
Q Consensus       340 ~~~~~~~~~~~~~~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~  418 (658)
                                  ++  +|.|+||||..+.. ...+++++|||||+||||+++++++++.+..... ...+++.|+|++|+
T Consensus       138 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~r~  202 (310)
T 3vo2_A          138 ------------GA--DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDY-KFSGLAWLFLGVPT  202 (310)
T ss_dssp             ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTC-CCCSEEEEEEEESS
T ss_pred             ------------CC--EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccc-cCCCcEEEEEEecC
Confidence                        12  47789999987542 2467899999999999999999999985432111 12368999999999


Q ss_pred             CcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccccccccc----cCC-CCCCceeEeecCCCc
Q 006160          419 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI----YPV-PSGCAMSVLVGTGNN  488 (658)
Q Consensus       419 ~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~----~P~-~~d~~~~~v~Gp~~~  488 (658)
                      .+++.+.+++. ++..   ....++++++++|++...+.......+..+...    ... ..+.....+|||..-
T Consensus       203 ~~d~~~~~el~-~l~~---~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp~~M  273 (310)
T 3vo2_A          203 SDSLLYKEELE-KMKE---MAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGLKGM  273 (310)
T ss_dssp             GGGCCSHHHHH-HHHH---HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEESTTH
T ss_pred             hhhcccHHHHH-HHHH---hCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCCHHH
Confidence            99886665543 3321   112379999999998643222211112111111    000 124677899999864

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=99.87  E-value=2.2e-21  Score=198.05  Aligned_cols=172  Identities=23%  Similarity=0.256  Sum_probs=130.8

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  199 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~  199 (658)
                      ..++|++++.+++++++++++.+..+.|+||||++|.++..+..++|||||+|.+.+  +.++|+||..  |.+|+.|.+
T Consensus         4 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~~~G~~s~~l~~   81 (257)
T 2qdx_A            4 YTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKVPDGPLTSRLQH   81 (257)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECCTTCTTHHHHTT
T ss_pred             EEEEEEEEEEcCCCeEEEEEeCCCCCccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEeCCCcchhHHHh
Confidence            457889999999999999999887789999999999998666778999999999864  7999999998  889988732


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  279 (658)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (658)
                       +   .                                                                          
T Consensus        82 -l---~--------------------------------------------------------------------------   83 (257)
T 2qdx_A           82 -L---K--------------------------------------------------------------------------   83 (257)
T ss_dssp             -C---C--------------------------------------------------------------------------
T ss_pred             -C---C--------------------------------------------------------------------------
Confidence             1   0                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160          280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  359 (658)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  359 (658)
                                                                                             +++  ++.|
T Consensus        84 -----------------------------------------------------------------------~Gd--~v~v   90 (257)
T 2qdx_A           84 -----------------------------------------------------------------------EGD--ELMV   90 (257)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   012  4678


Q ss_pred             E-CccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160          360 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  437 (658)
Q Consensus       360 e-GPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~  437 (658)
                      . ||||.+..... .+++++|||||+||||++++++++..+..      .++++|+|++|+.+++.+.+++.+++....+
T Consensus        91 ~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~  164 (257)
T 2qdx_A           91 SRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER------YEKVILVHGVRWVSELAYADFITKVLPEHEY  164 (257)
T ss_dssp             CSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTHHHHHTTGGGCTT
T ss_pred             ecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC------CCeEEEEEEcCCHHHhHhHHHHHHHHHhchh
Confidence            8 99998644322 37899999999999999999999876532      3589999999999998665554313211000


Q ss_pred             C-C--CCceEEEEEEcCC
Q 006160          438 S-D--KLNLETFIYVTRE  452 (658)
Q Consensus       438 ~-~--~~~l~I~iyVT~~  452 (658)
                      . +  ..+++++.++|++
T Consensus       165 ~~~~~~~~~~~~~~~s~~  182 (257)
T 2qdx_A          165 FGDQVKEKLIYYPLVTRE  182 (257)
T ss_dssp             THHHHHHHEEEEEEESSS
T ss_pred             hhccCCCcEEEEEEecCC
Confidence            0 0  1357777777765

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=99.87  E-value=5.6e-21  Score=197.09  Aligned_cols=171  Identities=19%  Similarity=0.237  Sum_probs=130.0

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCC-CCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  199 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i-s~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~  199 (658)
                      .++|++++.+++++++++++.+..+.|+||||++|+++.. +..++|||||+|.+.+  +.++|+||..  |.+|+.|.+
T Consensus        18 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~~~G~~s~~l~~   95 (272)
T 2bgi_A           18 AQTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKVPDGPLTSRLQH   95 (272)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECCTTCTTHHHHTT
T ss_pred             EEEEEEEEEcCCCEEEEEEeCCCCCccCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEccCCCchhHHHh
Confidence            5788999999999999999988778999999999999853 5678999999999864  7999999998  999988731


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  279 (658)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (658)
                       +   .                                                                          
T Consensus        96 -l---~--------------------------------------------------------------------------   97 (272)
T 2bgi_A           96 -I---K--------------------------------------------------------------------------   97 (272)
T ss_dssp             -C---C--------------------------------------------------------------------------
T ss_pred             -C---C--------------------------------------------------------------------------
Confidence             1   0                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160          280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  359 (658)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  359 (658)
                                                                                             +++  ++.|
T Consensus        98 -----------------------------------------------------------------------~Gd--~v~v  104 (272)
T 2bgi_A           98 -----------------------------------------------------------------------VGE--QIIL  104 (272)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   012  4667


Q ss_pred             E-CccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC-Cc
Q 006160          360 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC-PF  436 (658)
Q Consensus       360 e-GPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~-~~  436 (658)
                      + ||||.+..... .+++++|||||+||||++++++++..+.      ..++++|+|++|+.+++.+.+++.+++.. +.
T Consensus       105 ~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~  178 (272)
T 2bgi_A          105 RPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE------KFDEVIMMHACRTVAELEYGRQLVEALQEDPL  178 (272)
T ss_dssp             EEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT------SCSEEEEEEEESSSGGGHHHHHHHHHHHHCTT
T ss_pred             eeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhHHHHHHHHHHhcch
Confidence            8 99998654322 3789999999999999999999876532      13689999999999999665554313211 00


Q ss_pred             cCC--CCceEEEEEEcCC
Q 006160          437 FSD--KLNLETFIYVTRE  452 (658)
Q Consensus       437 ~~~--~~~l~I~iyVT~~  452 (658)
                      +.+  ..+++++.++|++
T Consensus       179 ~~~~~~~~~~~~~~~s~~  196 (272)
T 2bgi_A          179 IGELVEGKLKYYPTTTRE  196 (272)
T ss_dssp             TTTTSTTTEEEEEEESSS
T ss_pred             hhcccCCcEEEEEEecCC
Confidence            001  2468888788765

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=99.87  E-value=2e-21  Score=210.69  Aligned_cols=170  Identities=12%  Similarity=0.143  Sum_probs=132.8

Q ss_pred             cceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEc--Cch
Q 006160          121 RRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  193 (658)
Q Consensus       121 ~~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~  193 (658)
                      .+.++|++.+.++++++++++..+..   ..|+||||+.|+++..+  ..++|||||+|.|.+  +.++|+||..  |.+
T Consensus       152 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~--~~~~i~Vk~~~~G~~  229 (396)
T 1gvh_A          152 TRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDG--KGYRIAVKREEGGQV  229 (396)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCCS--SCEEEEEECCTTCHH
T ss_pred             cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCCCC--CeEEEEEEEcCCCcc
Confidence            35788999999999999999987642   58999999999998433  368999999999863  7899999998  999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          194 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP  273 (658)
Q Consensus       194 T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  273 (658)
                      |+.|++.+..                                                                      
T Consensus       230 S~~L~~~l~~----------------------------------------------------------------------  239 (396)
T 1gvh_A          230 SNWLHNHANV----------------------------------------------------------------------  239 (396)
T ss_dssp             HHHHHHTCCT----------------------------------------------------------------------
T ss_pred             hHHHHhcCCC----------------------------------------------------------------------
Confidence            9988764311                                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT  353 (658)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (658)
                                                                                                    |+
T Consensus       240 ------------------------------------------------------------------------------Gd  241 (396)
T 1gvh_A          240 ------------------------------------------------------------------------------GD  241 (396)
T ss_dssp             ------------------------------------------------------------------------------TC
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          12


Q ss_pred             eeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160          354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  433 (658)
Q Consensus       354 ~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell  433 (658)
                        ++.|.||+|.+.......++++|||||+||||++++++++..+..      .++|+|+|++|+.+++.+.+++ +++.
T Consensus       242 --~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~el-~~l~  312 (396)
T 1gvh_A          242 --VVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH------TAQVNWFHAAENGDVHAFADEV-KELG  312 (396)
T ss_dssp             --EEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCTTTCCSHHHH-HHHH
T ss_pred             --EEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC------CCcEEEEEEeCCHHHhhhHHHH-HHHH
Confidence              477999999754332457899999999999999999999987641      3679999999999998665443 3332


Q ss_pred             CCccCCCCceEEEEEEcCCC
Q 006160          434 CPFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~  453 (658)
                          .+..+++++++++++.
T Consensus       313 ----~~~~~~~~~~~~s~~~  328 (396)
T 1gvh_A          313 ----QSLPRFTAHTWYRQPS  328 (396)
T ss_dssp             ----HTSSSEEEEEEESSCC
T ss_pred             ----HHCCCeEEEEEECCCC
Confidence                2334688888887653

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=99.87  E-value=1.3e-21  Score=197.64  Aligned_cols=205  Identities=16%  Similarity=0.192  Sum_probs=149.0

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  196 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~  196 (658)
                      ..+++++++.+++++.++++..+.   .+.|+||||++|+++..+..++||||++|.+.+ .+.++|+||..  |.+|+.
T Consensus        12 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~~~G~~S~~   90 (243)
T 2eix_A           12 KKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVYEKGQMSQY   90 (243)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCTTCHHHHH
T ss_pred             EEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEcCCCCcchH
Confidence            467899999999999888888664   478999999999998656678999999999864 48999999997  889988


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  276 (658)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (658)
                      |.+ +   .                                                                       
T Consensus        91 l~~-l---~-----------------------------------------------------------------------   95 (243)
T 2eix_A           91 IDH-L---N-----------------------------------------------------------------------   95 (243)
T ss_dssp             HHT-C---C-----------------------------------------------------------------------
T ss_pred             hhc-C---C-----------------------------------------------------------------------
Confidence            742 1   0                                                                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160          277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  356 (658)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (658)
                                                                                                +++  +
T Consensus        96 --------------------------------------------------------------------------~Gd--~   99 (243)
T 2eix_A           96 --------------------------------------------------------------------------PGD--F   99 (243)
T ss_dssp             --------------------------------------------------------------------------TTC--E
T ss_pred             --------------------------------------------------------------------------CCC--E
Confidence                                                                                      012  4


Q ss_pred             EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160          357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  436 (658)
Q Consensus       357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~  436 (658)
                      +.|+||||........+++++|||||+||||+++++++++++..     ..++++|+|++|+.+++.+.+++ +++.   
T Consensus       100 v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~-----~~~~v~l~~~~r~~~~~~~~~el-~~l~---  170 (243)
T 2eix_A          100 LQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK-----EKTIINLIFANVNEDDILLRTEL-DDMA---  170 (243)
T ss_dssp             EEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEEEEEEEEEGGGCTTHHHH-HHHH---
T ss_pred             EEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC-----CCcEEEEEEEcCCHHHhhHHHHH-HHHH---
Confidence            77999999964433457899999999999999999999976421     24689999999999998555443 3332   


Q ss_pred             cCCCCceEEEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          437 FSDKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       437 ~~~~~~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                       .+..+++++..++++.+.+ ...+.+...++.+..+.+.+.....+|||...
T Consensus       171 -~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~~~~~~vy~CGp~~m  222 (243)
T 2eix_A          171 -KKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMM  222 (243)
T ss_dssp             -HHCTTEEEEEEEEECCTTCCSEESSCCHHHHHHHSCCTTSSEEEEEESSHHH
T ss_pred             -HHCCCeEEEEEeCCCCccccCcCCccCHHHHHHhcCCCCCCeEEEEECCHHH
Confidence             1233688988888754322 22233322333344444444567889999854

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=99.87  E-value=1e-20  Score=205.63  Aligned_cols=169  Identities=18%  Similarity=0.264  Sum_probs=130.1

Q ss_pred             cceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCC-CC-CCcceeEEeeeCCCCCCCeEEEEEEEc-----
Q 006160          121 RRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRE-LS-WLQWHPFSVSSSPLEGKYHSSVLIKVL-----  190 (658)
Q Consensus       121 ~~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~-is-~~q~HPFTIaS~p~~~~~~lsl~IR~~-----  190 (658)
                      .+.++|++.+.+++++.++++..+..   ..|+||||+.|+++. .. ..++|||||+|.|.+  +.++|+||..     
T Consensus       154 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~--~~~~i~Vk~~~~~~~  231 (403)
T 1cqx_A          154 WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNG--RTYRISVKREGGGPQ  231 (403)
T ss_dssp             CEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCS--SCEEEEEECCCBTTB
T ss_pred             ceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCCC--CeEEEEEEECCCCCC
Confidence            35788999999999999999986542   589999999999983 22 368999999999863  7899999998     


Q ss_pred             --CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCC
Q 006160          191 --GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA  268 (658)
Q Consensus       191 --G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~  268 (658)
                        |.+|+.|++.+..                                                                 
T Consensus       232 ~~G~~S~~L~~~l~~-----------------------------------------------------------------  246 (403)
T 1cqx_A          232 PPGYVSNLLHDHVNV-----------------------------------------------------------------  246 (403)
T ss_dssp             CCCHHHHHHHHHCCT-----------------------------------------------------------------
T ss_pred             CCCeehHHHhhCCCC-----------------------------------------------------------------
Confidence              7789888764311                                                                 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          269 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP  348 (658)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (658)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (403)
T 1cqx_A          247 --------------------------------------------------------------------------------  246 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          349 LLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       349 ~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                         |+  ++.|.||+|.+.......++++|||||+||||+++++++++. .      ..++|+|+|++|+.+++.+.++ 
T Consensus       247 ---Gd--~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~------~~~~v~l~~~~r~~~~~~~~~e-  313 (403)
T 1cqx_A          247 ---GD--QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A------PPRQVVFVHGARNSAVHAMRDR-  313 (403)
T ss_dssp             ---TC--EEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S------SCCCEEEEEEESCSSSCHHHHH-
T ss_pred             ---CC--EEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C------CCCcEEEEEEeCChhhCcHHHH-
Confidence               12  477999999754332467899999999999999999999975 2      1368999999999999865443 


Q ss_pred             HHhccCCccCCCCceEEEEEEcCCC
Q 006160          429 YKESICPFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       429 l~ell~~~~~~~~~l~I~iyVT~~~  453 (658)
                      ++++.    .+..+++++++++++.
T Consensus       314 l~~l~----~~~~~~~~~~~~s~~~  334 (403)
T 1cqx_A          314 LREAA----KTYENLDLFVFYDQPL  334 (403)
T ss_dssp             HHHHH----HHCTTEEEEEEESSCC
T ss_pred             HHHHH----HhCCCcEEEEEECCCC
Confidence            33332    2334688888887654

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.86  E-value=3.5e-21  Score=204.48  Aligned_cols=199  Identities=17%  Similarity=0.213  Sum_probs=147.1

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  196 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~  196 (658)
                      ...++.+++.+++++++++++.+.   .+.|+||||++|++|.  ..++|||||+|.+.  .+.++|+||..  |.+|+.
T Consensus       109 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~--~~~l~~~vk~~~~G~~S~~  184 (338)
T 1krh_A          109 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPG--TTETRSYSFSSQPG--NRLTGFVVRNVPQGKMSEY  184 (338)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTT--SSCEEEEECCSCTT--CSEEEEEEECCTTCHHHHH
T ss_pred             EEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCC--CCccccccccCCCC--CCeEEEEEEEcCCCCchhh
Confidence            357888999999999999998776   5789999999999985  35799999999986  38999999999  889988


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  276 (658)
Q Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (658)
                      |++.+..                                                                         
T Consensus       185 L~~~l~~-------------------------------------------------------------------------  191 (338)
T 1krh_A          185 LSVQAKA-------------------------------------------------------------------------  191 (338)
T ss_dssp             HHTTCCT-------------------------------------------------------------------------
T ss_pred             HhhccCC-------------------------------------------------------------------------
Confidence            8543210                                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160          277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  356 (658)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (658)
                                                                                                 ++  +
T Consensus       192 ---------------------------------------------------------------------------Gd--~  194 (338)
T 1krh_A          192 ---------------------------------------------------------------------------GD--K  194 (338)
T ss_dssp             ---------------------------------------------------------------------------TC--E
T ss_pred             ---------------------------------------------------------------------------CC--E
Confidence                                                                                       12  4


Q ss_pred             EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160          357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  436 (658)
Q Consensus       357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~  436 (658)
                      +.|+||||.+.... ..++++|||||+||||++++++++..+..      .++++|+|++|+.+++.+.+++ +++.   
T Consensus       195 v~v~gP~G~f~~~~-~~~~~vliagGtGiaP~~s~l~~l~~~~~------~~~v~l~~~~r~~~d~~~~~el-~~l~---  263 (338)
T 1krh_A          195 MSFTGPFGSFYLRD-VKRPVLMLAGGTGIAPFLSMLQVLEQKGS------EHPVRLVFGVTQDCDLVALEQL-DALQ---  263 (338)
T ss_dssp             EEEEEEECSCSCCC-CSSCEEEEEEGGGHHHHHHHHHHHHHHCC------SSCEEEEEEESSGGGCCCHHHH-HHHH---
T ss_pred             EEEECCccceEeCC-CCceEEEEEccccHhHHHHHHHHHHHcCC------CCeEEEEEEeCCHHHhhhHHHH-HHHH---
Confidence            77999999976432 34899999999999999999999987541      3679999999999998555544 3322   


Q ss_pred             cCCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          437 FSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       437 ~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                       .+..+++++.+++++++.+...+.+...+.....+.  ....+.+|||+..
T Consensus       264 -~~~~~~~~~~~~s~~~~~~~~~g~v~~~l~~~~~~~--~~~~vy~CGp~~m  312 (338)
T 1krh_A          264 -QKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG--GEVDVYLCGPVPM  312 (338)
T ss_dssp             -HHCTTEEEEEEETTCCSSSSEESCSGGGCCGGGGGG--GCSEEEEEEEHHH
T ss_pred             -HhCCCeEEEEEEecCCCCCCccCccCHHHHHhhccc--CCcEEEEECCHHH
Confidence             123468999999987653332333332222122232  3456789999854

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=99.85  E-value=3.8e-20  Score=201.90  Aligned_cols=175  Identities=15%  Similarity=0.201  Sum_probs=130.8

Q ss_pred             ceEEEEEEEEecC-----ceEEEEEeCCC-CCCcCCCcEEEEEeCCC---C-CCcceeEEeeeCCCC---CCCeEEEEEE
Q 006160          122 RTVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVREL---S-WLQWHPFSVSSSPLE---GKYHSSVLIK  188 (658)
Q Consensus       122 ~~~~v~sv~~l~~-----~v~~l~i~~p~-~~~~~PGQ~v~L~vp~i---s-~~q~HPFTIaS~p~~---~~~~lsl~IR  188 (658)
                      ...+|++++.+.+     ++++|++..+. .+.|+||||++|.++..   + .+++|||||+|++.+   +.+.++|+||
T Consensus       123 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk  202 (402)
T 2b5o_A          123 FLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVR  202 (402)
T ss_dssp             EEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEE
T ss_pred             EEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEE
Confidence            3578899999987     89999999775 48999999999998853   2 368999999999863   1478999999


Q ss_pred             E------------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCC
Q 006160          189 V------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV  256 (658)
Q Consensus       189 ~------------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~  256 (658)
                      .            .|.+|+.|.+ +..                                                     
T Consensus       203 ~~~y~~~~~~~~~~G~~S~~L~~-l~~-----------------------------------------------------  228 (402)
T 2b5o_A          203 QLEYQDPESGETVYGVCSTYLCN-LPV-----------------------------------------------------  228 (402)
T ss_dssp             CCEEECTTTCCEEECHHHHHHHT-CCT-----------------------------------------------------
T ss_pred             EeeecccccCcCCCCchhHHHhh-CCC-----------------------------------------------------
Confidence            7            5788888754 100                                                     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCC
Q 006160          257 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQG  336 (658)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (658)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (402)
T 2b5o_A          229 --------------------------------------------------------------------------------  228 (402)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCC-CeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEE
Q 006160          337 SPPQRPPPSRHPLLPP-TKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW  414 (658)
Q Consensus       337 ~~~~~~~~~~~~~~~~-~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW  414 (658)
                                     + +  ++.|+||||..+.. ....+++||||||+||||+++++++++.+..... ...++++|+|
T Consensus       229 ---------------G~d--~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~-~~~~~v~L~~  290 (402)
T 2b5o_A          229 ---------------GTD--DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDY-KFKGKAWLIF  290 (402)
T ss_dssp             ---------------TCC--CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSC-CCCSEEEEEE
T ss_pred             ---------------CCc--eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccc-cccCCEEEEE
Confidence                           1 1  36789999987532 2347899999999999999999999986532110 1246899999


Q ss_pred             eeccCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCC
Q 006160          415 AVKKSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRET  453 (658)
Q Consensus       415 ~vR~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~  453 (658)
                      ++|+.+|+.+.+++ +++.    .+. .+++++.+++++.
T Consensus       291 g~R~~~d~~~~~eL-~~l~----~~~~~~~~v~~~~S~~~  325 (402)
T 2b5o_A          291 GVPYTANILYKDDF-EKMA----AENPDNFRLTYAISREQ  325 (402)
T ss_dssp             EESSGGGCTTHHHH-HHHH----HHCTTTEEEEEEETTTC
T ss_pred             ecCCHHHhHHHHHH-HHHH----HhCCCcEEEEEEECCCC
Confidence            99999988665554 3332    122 2688888888764

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=99.85  E-value=2.8e-20  Score=190.85  Aligned_cols=207  Identities=17%  Similarity=0.193  Sum_probs=145.5

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--------
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--------  190 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--------  190 (658)
                      ..++|++++.+++++.++++..+.   .+.|+||||++|.++..+..++|||||+|.+.+ .+.++|+||.+        
T Consensus        13 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~   91 (270)
T 2cnd_A           13 IHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKF   91 (270)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCSSCBTTB
T ss_pred             EEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEeccCccccc
Confidence            467899999999999999998764   368999999999998666778999999999864 48999999975        


Q ss_pred             ---CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160          191 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG  267 (658)
Q Consensus       191 ---G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~  267 (658)
                         |.+|+.|. .+..                                                                
T Consensus        92 ~~~G~~s~~l~-~l~~----------------------------------------------------------------  106 (270)
T 2cnd_A           92 PNGGLMTQYLD-SLPV----------------------------------------------------------------  106 (270)
T ss_dssp             TTCCHHHHHHH-HCCT----------------------------------------------------------------
T ss_pred             CCCCchhhHHh-cCCC----------------------------------------------------------------
Confidence               77888874 2110                                                                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (658)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (270)
T 2cnd_A          107 --------------------------------------------------------------------------------  106 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEECccCCCc-------cCc---cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeec
Q 006160          348 PLLPPTKITASVEGPYGHEV-------PYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK  417 (658)
Q Consensus       348 ~~~~~~~~~v~veGPyG~~~-------~~~---~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR  417 (658)
                          ++  ++.|+||||...       ...   ...++++|||||+||||+++++++++.+..    ...++++|+|++|
T Consensus       107 ----Gd--~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~----~~~~~v~l~~~~r  176 (270)
T 2cnd_A          107 ----GS--YIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP----EDHTEMHLVYANR  176 (270)
T ss_dssp             ----TC--EEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT----TCCCEEEEEEEES
T ss_pred             ----CC--EEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC----CCCcEEEEEEEcC
Confidence                02  477999999731       110   247899999999999999999999987521    1246899999999


Q ss_pred             cCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCC---C-CCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          418 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET---E-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       418 ~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~---~-~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      +.+++.+.+++. ++..   ....+++++..++++.   + +....+.+...++.+..+...+...+.+|||...
T Consensus       177 ~~~d~~~~~el~-~l~~---~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m  247 (270)
T 2cnd_A          177 TEDDILLRDELD-RWAA---EYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPM  247 (270)
T ss_dssp             CGGGCTTHHHHH-HHHH---HCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHH
T ss_pred             CHHHcchHHHHH-HHHH---HCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEEECCHHH
Confidence            999986655543 3221   1123588877777632   1 1112233333333333344334567789999854

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=99.84  E-value=2.6e-20  Score=191.75  Aligned_cols=206  Identities=18%  Similarity=0.260  Sum_probs=147.1

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--------
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--------  190 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--------  190 (658)
                      ..++|++++.+++++.++++..+.   .+.|+||||++|+++..+..++|||||+|++.+ .+.++|+||..        
T Consensus        17 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~   95 (275)
T 1umk_A           17 YPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKF   95 (275)
T ss_dssp             EEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTB
T ss_pred             EEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCC-CCeEEEEEEEeccCccccc
Confidence            467899999999999999988664   368999999999998666789999999999863 48999999987        


Q ss_pred             ---CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160          191 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG  267 (658)
Q Consensus       191 ---G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~  267 (658)
                         |.+|+.|.+ +..                                                                
T Consensus        96 ~~~G~~S~~L~~-l~~----------------------------------------------------------------  110 (275)
T 1umk_A           96 PAGGKMSQYLES-MQI----------------------------------------------------------------  110 (275)
T ss_dssp             TTCCHHHHHHHH-CCT----------------------------------------------------------------
T ss_pred             CCCChhHHHHhc-CCC----------------------------------------------------------------
Confidence               889988842 100                                                                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (658)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (275)
T 1umk_A          111 --------------------------------------------------------------------------------  110 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEECccCCCccC----------------ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEE
Q 006160          348 PLLPPTKITASVEGPYGHEVPY----------------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVL  411 (658)
Q Consensus       348 ~~~~~~~~~v~veGPyG~~~~~----------------~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~  411 (658)
                          ++  ++.|+||||.....                ...++++||||||+||||+++++++++++..     ..++|+
T Consensus       111 ----Gd--~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~-----~~~~v~  179 (275)
T 1umk_A          111 ----GD--TIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD-----DHTVCH  179 (275)
T ss_dssp             ----TC--EEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEE
T ss_pred             ----CC--EEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCCC-----CCcEEE
Confidence                12  47899999986320                0257899999999999999999999976421     246899


Q ss_pred             EEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160          412 IVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       412 liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      |+|++|+.+++.+.+++ +++..   ....+++++..++++.+.+. ..+.+...++.+..+...+...+.+|||...
T Consensus       180 l~~~~r~~~d~~~~~el-~~l~~---~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m  253 (275)
T 1umk_A          180 LLFANQTEKDILLRPEL-EELRN---KHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPM  253 (275)
T ss_dssp             EEEEESSGGGCTTHHHH-HHHHH---HCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCGGGCCEEEEESCHHH
T ss_pred             EEEEcCCHHHhhHHHHH-HHHHH---hCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCCCCCCeEEEEECCHHH
Confidence            99999999998665544 33321   11125788777777543222 2233332333344443334567899999854

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=99.84  E-value=1.2e-19  Score=190.81  Aligned_cols=210  Identities=18%  Similarity=0.187  Sum_probs=145.5

Q ss_pred             eEEEEEEEEecC-----ceEEEEEeCCCCCCcCCCcEEEEEeCCC----CCCcceeEEeeeCCCC---CCCeEEEEEEEc
Q 006160          123 TVDVLSASCLPC-----GTVELVLSKPANLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIKVL  190 (658)
Q Consensus       123 ~~~v~sv~~l~~-----~v~~l~i~~p~~~~~~PGQ~v~L~vp~i----s~~q~HPFTIaS~p~~---~~~~lsl~IR~~  190 (658)
                      .++|++++.+++     +++++++..+..+.|+||||++|.++..    ..+++|||||+|++.+   +.+.++|+||..
T Consensus        39 ~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~  118 (314)
T 1fnb_A           39 VGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL  118 (314)
T ss_dssp             EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECC
T ss_pred             EEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEE
Confidence            578888888876     8999999987778999999999999863    2368999999999853   247899999963


Q ss_pred             -----------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCC
Q 006160          191 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP  259 (658)
Q Consensus       191 -----------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~  259 (658)
                                 |.+|+.|.+ +..                                                        
T Consensus       119 ~y~~~~g~~~~G~~S~~L~~-l~~--------------------------------------------------------  141 (314)
T 1fnb_A          119 IYTNDAGETIKGVCSNFLCD-LKP--------------------------------------------------------  141 (314)
T ss_dssp             EEECTTSCEEECHHHHHHHH-CCT--------------------------------------------------------
T ss_pred             EeccCCCCcCCCchhhHhhc-CCC--------------------------------------------------------
Confidence                       888998875 210                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCC
Q 006160          260 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP  339 (658)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (658)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (314)
T 1fnb_A          142 --------------------------------------------------------------------------------  141 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc
Q 006160          340 QRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK  418 (658)
Q Consensus       340 ~~~~~~~~~~~~~~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~  418 (658)
                                  +.  +|.|+||||..+.. ....+++||||||+||||+++++++++.+..... ....+++|+|++|+
T Consensus       142 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~R~  206 (314)
T 1fnb_A          142 ------------GA--EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPT  206 (314)
T ss_dssp             ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTB-CCCSEEEEEEEESS
T ss_pred             ------------CC--EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccc-cCCCCEEEEEecCC
Confidence                        02  47799999987542 2347899999999999999999999986532111 11368999999999


Q ss_pred             CcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCCCCCCCccccccccccc----ccCCC-CCCceeEeecCCCch
Q 006160          419 SNELSLLSNFYKESICPFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSS----IYPVP-SGCAMSVLVGTGNNV  489 (658)
Q Consensus       419 ~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~----~~P~~-~d~~~~~v~Gp~~~~  489 (658)
                      .+++.+.+++ +++.    .+. .+++++.++|++++.+.+.....+..+..    +.... .+.....+|||...+
T Consensus       207 ~~d~~~~~el-~~l~----~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp~~m~  278 (314)
T 1fnb_A          207 SSSLLYKEEF-EKMK----EKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGME  278 (314)
T ss_dssp             GGGCCSHHHH-HHHH----HHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEECTTHH
T ss_pred             HHHhhhHHHH-HHHH----HhCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECCHHHH
Confidence            9988665554 3322    122 26889888998754222111111111111    10001 135677899998643

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=99.83  E-value=2e-19  Score=188.02  Aligned_cols=176  Identities=18%  Similarity=0.206  Sum_probs=130.6

Q ss_pred             eEEEEEEEEecC-----ceEEEEEeCCC-CCCcCCCcEEEEEeCCCC----CCcceeEEeeeCCCC---CCCeEEEEEEE
Q 006160          123 TVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLE---GKYHSSVLIKV  189 (658)
Q Consensus       123 ~~~v~sv~~l~~-----~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is----~~q~HPFTIaS~p~~---~~~~lsl~IR~  189 (658)
                      ..+|++.+.+.+     +++++++..+. .+.|+||||++|.++...    .+++|||||+|++..   +.+.++|+||.
T Consensus        23 ~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~  102 (304)
T 2bmw_A           23 IGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ  102 (304)
T ss_dssp             EEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred             EEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEE
Confidence            578888888887     89999998764 579999999999998642    368999999999852   24799999997


Q ss_pred             ------------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCC
Q 006160          190 ------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG  257 (658)
Q Consensus       190 ------------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~  257 (658)
                                  .|.+|+.|.+ +..                                                      
T Consensus       103 ~~y~~~~~~~~~~G~~S~~L~~-l~~------------------------------------------------------  127 (304)
T 2bmw_A          103 LEYKHPESGETVYGVCSTYLTH-IEP------------------------------------------------------  127 (304)
T ss_dssp             CEECSSSSSSCEECHHHHHHHT-CCT------------------------------------------------------
T ss_pred             EEeeccccCcCCCcchhhHHhc-CCC------------------------------------------------------
Confidence                        4778888754 100                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCC
Q 006160          258 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGS  337 (658)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (658)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (304)
T 2bmw_A          128 --------------------------------------------------------------------------------  127 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhcc--CCC-CCCceEEEE
Q 006160          338 PPQRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINE--GKS-CLPRNVLIV  413 (658)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~--~~~-~~~~kV~li  413 (658)
                                    +.  ++.|+||||..+.. ....+++||||||+||||+++++++++.+.+.  +.. ....+++|+
T Consensus       128 --------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~  191 (304)
T 2bmw_A          128 --------------GS--EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLV  191 (304)
T ss_dssp             --------------TC--EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEE
T ss_pred             --------------CC--EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEE
Confidence                          12  47799999986532 23578999999999999999999999865421  000 013579999


Q ss_pred             EeeccCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCCC
Q 006160          414 WAVKKSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRETE  454 (658)
Q Consensus       414 W~vR~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~~  454 (658)
                      |++|+.+++.+.+++ +++.    .+. .+++++.++|++..
T Consensus       192 ~g~r~~~d~~~~~el-~~~~----~~~~~~~~~~~~~s~~~~  228 (304)
T 2bmw_A          192 FGVPTTPNILYKEEL-EEIQ----QKYPDNFRLTYAISREQK  228 (304)
T ss_dssp             EEESSGGGCTTHHHH-HHHH----HHCTTTEEEEEEETTTCB
T ss_pred             EEeCChHhcchHHHH-HHHH----HhCCCcEEEEEEEcCCCC
Confidence            999999988655544 3332    122 36889999998753

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=99.82  E-value=1.8e-19  Score=184.86  Aligned_cols=146  Identities=21%  Similarity=0.289  Sum_probs=119.2

Q ss_pred             eEEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEE--cCchHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV--LGEWTENLRD  199 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~--~G~~T~~L~~  199 (658)
                      ..+|++++.+++++++++++.+. ...|+||||++|.++..+..++|||||+|.+.+ .+.++|+||.  .|.+|+.|.+
T Consensus         7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~S~~l~~   85 (262)
T 1ep3_B            7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGDETTGTYKLSK   85 (262)
T ss_dssp             EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCCTTSHHHHHHT
T ss_pred             ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEecCCchHHHHhc
Confidence            57889999999999999999776 368999999999998766789999999999863 4899999999  8999987741


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160          200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  279 (658)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (658)
                      +    .                                                                          
T Consensus        86 l----~--------------------------------------------------------------------------   87 (262)
T 1ep3_B           86 L----E--------------------------------------------------------------------------   87 (262)
T ss_dssp             C----C--------------------------------------------------------------------------
T ss_pred             C----C--------------------------------------------------------------------------
Confidence            1    0                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160          280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  359 (658)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  359 (658)
                                                                                             +++  ++.|
T Consensus        88 -----------------------------------------------------------------------~Gd--~v~v   94 (262)
T 1ep3_B           88 -----------------------------------------------------------------------SGA--KVDV   94 (262)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   012  4779


Q ss_pred             ECccCCCccCcc--ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          360 EGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       360 eGPyG~~~~~~~--~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      +||||+.+....  ..++++|||||+||||++++++++.++.        ++++|+|++|+.+++.+.+++
T Consensus        95 ~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~--------~~v~l~~~~r~~~~~~~~~el  157 (262)
T 1ep3_B           95 MGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG--------CQMTILLGFASENVKILENEF  157 (262)
T ss_dssp             EEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT--------CEEEEEEEESSGGGCCCHHHH
T ss_pred             EcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhhHHHH
Confidence            999998433222  3789999999999999999999998742        479999999999998665554

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=99.80  E-value=5.3e-19  Score=185.83  Aligned_cols=173  Identities=18%  Similarity=0.245  Sum_probs=130.0

Q ss_pred             eEEEEEEEEecCc--------------eEEEEEeCCCC-CCcCCCcEEEEEeCCCC----C-------CcceeEEeeeCC
Q 006160          123 TVDVLSASCLPCG--------------TVELVLSKPAN-LRYNALSFFFLQVRELS----W-------LQWHPFSVSSSP  176 (658)
Q Consensus       123 ~~~v~sv~~l~~~--------------v~~l~i~~p~~-~~~~PGQ~v~L~vp~is----~-------~q~HPFTIaS~p  176 (658)
                      .++|++++.++++              ++++++..+.. +.|+||||++|.++...    .       +++|||||+|++
T Consensus        23 ~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p  102 (314)
T 2rc5_A           23 KAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPS  102 (314)
T ss_dssp             EEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCT
T ss_pred             EEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCc
Confidence            5788899999877              99999998764 89999999999998642    2       588999999998


Q ss_pred             CC---CCCeEEEEEEEc------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhh
Q 006160          177 LE---GKYHSSVLIKVL------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYEN  241 (658)
Q Consensus       177 ~~---~~~~lsl~IR~~------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (658)
                      ..   +.+.++|+||..            |.+|+.|.+ +..                                      
T Consensus       103 ~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~-l~~--------------------------------------  143 (314)
T 2rc5_A          103 YSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCD-LKP--------------------------------------  143 (314)
T ss_dssp             TCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHT-CCT--------------------------------------
T ss_pred             cccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhc-CCC--------------------------------------
Confidence            52   247899999984            558887754 210                                      


Q ss_pred             hhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccc
Q 006160          242 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET  321 (658)
Q Consensus       242 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (658)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (314)
T 2rc5_A          144 --------------------------------------------------------------------------------  143 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCc--cccceEEEEEcCcchhhhHHHHHHHHHhh
Q 006160          322 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRI  399 (658)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~--~~~~~vvlVAGGiGITP~lsil~~ll~~~  399 (658)
                                                    +.  +|.|+||||..+...  ...+++||||||+||||+++++++++.+.
T Consensus       144 ------------------------------Gd--~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~  191 (314)
T 2rc5_A          144 ------------------------------GD--EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK  191 (314)
T ss_dssp             ------------------------------TC--EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTC
T ss_pred             ------------------------------cC--EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhc
Confidence                                          12  477999999875422  25789999999999999999999997643


Q ss_pred             ccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCC
Q 006160          400 NEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       400 ~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~  454 (658)
                      ..+   ...+++|+|++|+.+++.+.+++ +++.    .+..+++++.++|++..
T Consensus       192 ~~~---~~~~v~l~~g~r~~~d~~~~~el-~~l~----~~~~~~~~~~~~s~~~~  238 (314)
T 2rc5_A          192 LIK---FTGNITLVYGAPYSDELVMMDYL-KGLE----SKHKNFKLITAISREEK  238 (314)
T ss_dssp             SSC---BCSCEEEEEEESSGGGSCSHHHH-HHHH----HHHSSEEEEEEETTTCB
T ss_pred             ccC---CCCcEEEEEEeCCHHHHhHHHHH-HHHH----HhCCcEEEEEEECCCCC
Confidence            111   13579999999999988655544 3332    12236889999998743

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.63  E-value=7.4e-15  Score=149.96  Aligned_cols=74  Identities=8%  Similarity=0.081  Sum_probs=59.4

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCC--C-CcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEc---CchH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPAN--L-RYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWT  194 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~--~-~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~---G~~T  194 (658)
                      +..+|.+++.++.+++++++..+..  + .++|||||.|.++. .+...+|+||+++.+.   ++++|.++..   |..|
T Consensus         9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~~~G~~S   85 (252)
T 2gpj_A            9 RELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHDTDGPAS   85 (252)
T ss_dssp             EEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCSSCCHHH
T ss_pred             EEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeCCCCcHH
Confidence            4678999999999999999997642  3 57999999999985 3557899999999864   5777777765   7788


Q ss_pred             HHHH
Q 006160          195 ENLR  198 (658)
Q Consensus       195 ~~L~  198 (658)
                      +.|.
T Consensus        86 ~~l~   89 (252)
T 2gpj_A           86 SWAK   89 (252)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7773

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.50  E-value=2e-14  Score=155.44  Aligned_cols=88  Identities=11%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             EEEEECcc-CCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160          356 TASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  433 (658)
Q Consensus       356 ~v~veGPy-G~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell  433 (658)
                      +|.|.||. |.+.......+.++|||||+|||||+++++++..+..      ..++.|+|++|+. +|+.+.+++ ++..
T Consensus       209 ~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~------~~~~~L~~G~R~~~~d~ly~~El-~~~~  281 (374)
T 1ddg_A          209 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA------PGKNWLFFGNPHFTEDFLYQVEW-QRYV  281 (374)
T ss_dssp             EEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCHHHHCTTHHHH-HHHH
T ss_pred             EEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC------CCCEEEEEEeCCchhhhhHHHHH-HHHH
Confidence            46678854 4543322356889999999999999999999987542      3579999999997 577555444 3332


Q ss_pred             CCccCCCCceEEEEEEcCCCC
Q 006160          434 CPFFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~~  454 (658)
                          .+...++++..++++.+
T Consensus       282 ----~~~~~~~l~~a~Srd~~  298 (374)
T 1ddg_A          282 ----KEGVLTRIDLAWSRDQK  298 (374)
T ss_dssp             ----HTTSCCEEEEEETTSSS
T ss_pred             ----HhCCCcEEEEEEecCCC
Confidence                12334678888888753

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.46  E-value=1.9e-13  Score=148.63  Aligned_cols=125  Identities=13%  Similarity=0.157  Sum_probs=79.1

Q ss_pred             CeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHh
Q 006160          353 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKE  431 (658)
Q Consensus       353 ~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~e  431 (658)
                      +.+.+.|+||+|.+.......+.++|||||+|||||++++++.....+.+.  ...++.|+|++|+ .+|+.+.+++ ++
T Consensus       220 d~v~v~v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~--~~~~v~L~~G~R~~~~d~ly~~el-~~  296 (393)
T 4dql_A          220 DTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQ--SLGEAHLYFGCRSPHEDYLYQEEL-EN  296 (393)
T ss_dssp             CEEEEEEECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTCCTTHHHH-HH
T ss_pred             CEEEEEEEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCC--CCCCEEEEEEECCcchhhHHHHHH-HH
Confidence            456788999999865443456789999999999999999998643322221  2467999999999 4677555444 33


Q ss_pred             ccCCccCCCCceEEEEEEcCCCCCC-CCccccc---ccccccccCCCCCCceeEeecCCCc
Q 006160          432 SICPFFSDKLNLETFIYVTRETEPP-LEEGELH---KTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       432 ll~~~~~~~~~l~I~iyVT~~~~~~-~~~~~~~---~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      ..     +...+++++.++++++.. ....+..   ...+....   .+.....+|||...
T Consensus       297 ~~-----~~~~l~l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l---~~~~~vYvCGp~~~  349 (393)
T 4dql_A          297 AQ-----SEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELL---DQGAHFYICGDGSQ  349 (393)
T ss_dssp             HH-----HTTSCEEEEEESSCTTSCCCCHHHHHHHTHHHHHHHH---HTTCEEEEEEETTT
T ss_pred             HH-----hCCCeEEEEEEeCCCCCCCcchhhHHHhCHHHHHHHH---hCCcEEEEECCchh
Confidence            32     234678888898854321 1111110   00111111   13567889999765

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.36  E-value=4.2e-12  Score=139.76  Aligned_cols=92  Identities=16%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             EEEEEC-ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHHHHhcc
Q 006160          356 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI  433 (658)
Q Consensus       356 ~v~veG-PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~l~ell  433 (658)
                      +|.|.| |.|.+.......+.+||||||+|||||++++++++.+.+.. .....++.|+|++|+.+ |+.+.++ +++..
T Consensus       261 ~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~E-l~~~~  338 (435)
T 1f20_A          261 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHIYREE-TLQAK  338 (435)
T ss_dssp             EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEESCTTTSCTTHHH-HHHHH
T ss_pred             EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhc-cCCCCCEEEEEeecccccchhHHHH-HHHHH
Confidence            477888 56665433234678999999999999999999987743110 01246899999999997 5545443 33332


Q ss_pred             CCccCCCCceEEEEEEcCCC
Q 006160          434 CPFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~  453 (658)
                          .....+++++.++++.
T Consensus       339 ----~~~~~~~l~~a~Sr~~  354 (435)
T 1f20_A          339 ----NKGVFRELYTAYSREP  354 (435)
T ss_dssp             ----HTTSEEEEEEEESSCT
T ss_pred             ----HcCCccEEEEEECCCC
Confidence                1233457777888764

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.28  E-value=2.6e-11  Score=140.59  Aligned_cols=92  Identities=16%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             EEEEEC-ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHHHHhcc
Q 006160          356 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI  433 (658)
Q Consensus       356 ~v~veG-PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~l~ell  433 (658)
                      +|.|.| |.|.+.......+.+||||||+|||||++++++++...+.. .....++.|+|++|+.+ |+.+.+++ +++.
T Consensus       482 ~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~v~L~~G~R~~~~D~ly~dEL-~~~~  559 (688)
T 1tll_A          482 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHIYREET-LQAK  559 (688)
T ss_dssp             EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHS-CCCCCCEEEEEEESCTTTTCTTHHHH-HHHH
T ss_pred             EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhc-cCCCCCEEEEEEeccchhhhhHHHHH-HHHH
Confidence            467888 55565432234678999999999999999999988753211 01246899999999997 66554443 3332


Q ss_pred             CCccCCCCceEEEEEEcCCC
Q 006160          434 CPFFSDKLNLETFIYVTRET  453 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~  453 (658)
                          .....+++++.++++.
T Consensus       560 ----~~~~~~~l~~a~Sr~~  575 (688)
T 1tll_A          560 ----NKGVFRELYTAYSREP  575 (688)
T ss_dssp             ----HTTSEEEEEEEESSCT
T ss_pred             ----HcCCceEEEEEECCCC
Confidence                1233467888888764

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.25  E-value=4.1e-11  Score=135.15  Aligned_cols=94  Identities=11%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             EEEEECccCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160          356 TASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  433 (658)
Q Consensus       356 ~v~veGPyG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell  433 (658)
                      +|.|.||+|+.+. .......+||||||+|||||++++++.....+.+......++.|+|++|+. +|+.+.+++. +..
T Consensus       360 ~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~-~~~  438 (539)
T 2qtl_A          360 KISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELR-HFL  438 (539)
T ss_dssp             EEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHH-HHH
T ss_pred             EEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHH-HHH
Confidence            6889999984433 223457899999999999999999997543322111124689999999999 6876655543 332


Q ss_pred             CCccCCCCceEEEEEEcCCCC
Q 006160          434 CPFFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       434 ~~~~~~~~~l~I~iyVT~~~~  454 (658)
                          .....+++++.++|+..
T Consensus       439 ----~~g~~~~l~~afSRd~~  455 (539)
T 2qtl_A          439 ----KHGILTHLKVSFSRDAP  455 (539)
T ss_dssp             ----HTTSSCEEEEEESSSCC
T ss_pred             ----HhCCCcEEEEEEccCCC
Confidence                12334688888898754

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.17  E-value=4.1e-11  Score=132.59  Aligned_cols=123  Identities=15%  Similarity=0.165  Sum_probs=75.2

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccC
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  434 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~  434 (658)
                      +|.|.||+|.+.........++|||||+|||||++++++.....+.+.  ...++.|+|++|+. +|+.+.+++ +++. 
T Consensus       289 ~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~--~~~~~~Lf~G~R~~~~D~ly~dEl-~~l~-  364 (458)
T 3qfs_A          289 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYLYREEL-AQFH-  364 (458)
T ss_dssp             EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTC--CCCCEEEEEEESCTTTSCTTHHHH-HHHH-
T ss_pred             EEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEEeCCchHhhhHHHHH-HHHH-
Confidence            577899999764333346799999999999999999998643221111  23579999999996 677665544 3322 


Q ss_pred             CccCCCCceEEEEEEcCCCCCCCCcccccc---cccccccCCCCCCceeEeecCCCc
Q 006160          435 PFFSDKLNLETFIYVTRETEPPLEEGELHK---TMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~---~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                         .+....++++.++++............   ..+.++.   .+.....+|||...
T Consensus       365 ---~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l---~~~~~vYvCGp~~~  415 (458)
T 3qfs_A          365 ---RDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLI---EGGAHIYVCGDARN  415 (458)
T ss_dssp             ---HHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHH---HTTCEEEEEEETTT
T ss_pred             ---HcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHh---cCCCEEEEECCCHH
Confidence               112223788888887532111111000   0111111   14567889999755

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.15  E-value=2.1e-11  Score=141.23  Aligned_cols=77  Identities=12%  Similarity=0.273  Sum_probs=53.7

Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhcc----CCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEE
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIY  448 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~----~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iy  448 (658)
                      ...+||||||+|||||++++++++.+...    .......++.|+|++|+.+|+.+.+++. +...   .....+++++.
T Consensus       524 ~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly~dEl~-~~~~---~~g~~~~l~~a  599 (682)
T 2bpo_A          524 STPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWP-EYAK---KLDGSFEMVVA  599 (682)
T ss_dssp             TSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCTTTTTHH-HHHH---HHGGGEEEEEE
T ss_pred             CCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhhhHHHHH-HHHH---hcCCceEEEEE
Confidence            57899999999999999999999876530    0111246899999999998885544332 2210   11235788888


Q ss_pred             EcCCC
Q 006160          449 VTRET  453 (658)
Q Consensus       449 VT~~~  453 (658)
                      ++|++
T Consensus       600 fSr~d  604 (682)
T 2bpo_A          600 HSRLP  604 (682)
T ss_dssp             ESCCT
T ss_pred             ECCCC
Confidence            89854

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.11  E-value=7.9e-11  Score=135.01  Aligned_cols=92  Identities=14%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccC
Q 006160          356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  434 (658)
Q Consensus       356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~  434 (658)
                      +|.|.||+|++.........++|||||+|||||++++++.+...+.+.  ...++.|+|++|+. +|+.+.+++ ++.. 
T Consensus       449 ~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~--~~~~~~L~~G~R~~~~D~ly~~el-~~~~-  524 (618)
T 3qe2_A          449 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYLYREEL-AQFH-  524 (618)
T ss_dssp             EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTSCTTHHHH-HHHH-
T ss_pred             EEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEecCCCccccchHHHH-HHHH-
Confidence            577889999764333346789999999999999999999876433221  24679999999998 477655544 3322 


Q ss_pred             CccCCCCceEEEEEEcCCCC
Q 006160          435 PFFSDKLNLETFIYVTRETE  454 (658)
Q Consensus       435 ~~~~~~~~l~I~iyVT~~~~  454 (658)
                         .+....++++..+|+..
T Consensus       525 ---~~g~l~~l~~a~Srd~~  541 (618)
T 3qe2_A          525 ---RDGALTQLNVAFSREQS  541 (618)
T ss_dssp             ---HHTSSSEEEEEETTSSS
T ss_pred             ---hcCCCcEEEEEEcCCCC
Confidence               11222388888888754

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.05  E-value=6.5e-11  Score=110.72  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=49.7

Q ss_pred             EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      +.|+||||+++.. ...++++|||||+||||++++++++.++.        .+++++ ++|+.+++.+.+++
T Consensus         3 ~~v~GP~G~~~~~-~~~~~~llIaGG~GiaPl~sm~~~l~~~~--------~~v~l~-g~R~~~~~~~~~el   64 (142)
T 3lyu_A            3 LNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEEL   64 (142)
T ss_dssp             ----CCCSCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHTT--------CEEEEE-EEEEGGGCCSHHHH
T ss_pred             eeeeCCCCCCccC-CCCCeEEEEECcCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHHH
Confidence            4689999998764 45789999999999999999999997643        379999 99999999776655

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=98.80  E-value=5.3e-09  Score=99.35  Aligned_cols=63  Identities=19%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHH
Q 006160          357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY  429 (658)
Q Consensus       357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l  429 (658)
                      +.|+||||+++.. ...++++|||||+||||++++++++.++.        ++|+|+ ++|+.+++.+.+++.
T Consensus         8 l~v~gP~G~~f~~-~~~~~~llIaGG~GItPl~sm~~~l~~~~--------~~v~l~-g~r~~~d~~~~~el~   70 (158)
T 3lrx_A            8 LNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEELE   70 (158)
T ss_dssp             ----CCCCCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHHT--------CEEEEE-EECBGGGCCSHHHHH
T ss_pred             eEEECCCCCCCcc-CCCCeEEEEEccCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHHHH
Confidence            4799999997654 35789999999999999999999997643        379999 999999998776653

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=80.92  E-value=0.97  Score=41.29  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             EEEEeCChhhHHHHHHHHHhcccC
Q 006160          618 GVIVCGPPSLQSSVAKEIRSHSLM  641 (658)
Q Consensus       618 gV~~CGP~~m~~~V~~~~~~~~~~  641 (658)
                      -|++|||+.|.+.|++.+++....
T Consensus       110 ~vy~CGP~~Mm~av~~~l~~~~~~  133 (142)
T 3lyu_A          110 LVFMVGPVGDQKQVFEVVKEYGVP  133 (142)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCc
Confidence            599999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	658
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	1e-05
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	1e-04
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	3e-04
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	3e-04
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	4e-04
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	4e-04
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	0.002
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	0.003
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	0.004
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	0.004

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 375 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434
             ILV  G GI+PF +        I          VL+    +   +       Y+E   
Sbjct: 11  PCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDH-----IYREETL 65

Query: 435 PFFSDKLNLETFIYVTRETEPP 456
              +  +  E +   +RE + P
Sbjct: 66  QAKNKGVFRELYTAYSREPDRP 87

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 375 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434
            +I++  G GI+PF + L  +    ++         L +     S+ L     + +E   
Sbjct: 10  TIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLL-----YKEEFEK 64

Query: 435 PFFSDKLNLETFIYVTRETEPPLEEG 460
                  N      V+RE      E 
Sbjct: 65  MKEKAPDNFRLDFAVSREQTNEKGEK 90

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 375 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 410
           +L +++ G G++PF++++ D        K  L   V
Sbjct: 9   HLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGV 44

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 375 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434
             I++A G G++PF   L  +    +           +   V  S+        Y E   
Sbjct: 5   THIMIATGTGVAPFRGYLRRMFME-DVPNYRFGGLAWLFLGVANSDS-----LLYDEEFT 58

Query: 435 PFFSDKLNLETFIYVTRETEP 455
            +     +   +       + 
Sbjct: 59  SYLKQYPDNFRYDKALSREQK 79

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 375 NLILVAGGIGISPFLAILSDILH----RINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK 430
           N+I++AGG GI+P    L  +        N        + L+       N L     + +
Sbjct: 8   NVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNIL-----YKE 62

Query: 431 ESICPFFSDKLNLETFIYVTRETE 454
           E          N      ++RE +
Sbjct: 63  ELEEIQQKYPDNFRLTYAISREQK 86

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 374 ENLILVAGGIGISPFLAILSDILHRINEGKSCL 406
           E L ++A G  I P+L+IL             L
Sbjct: 7   ETLWMLATGTAIGPYLSILRLGKDLDRFKNLVL 39

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 376 LILVAGGIGISPFLAILSDILHRINEGKSCL 406
           ++++AGG GI+PFL++L  +  + +E    L
Sbjct: 8   VLMLAGGTGIAPFLSMLQVLEQKGSEHPVRL 38

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 7/23 (30%), Positives = 17/23 (73%)

Query: 376 LILVAGGIGISPFLAILSDILHR 398
           ++L++GG+G++P +++L   L  
Sbjct: 8   IVLISGGVGLTPMVSMLKVALQA 30

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 375 NLILVAGGIGISPFLAILSDILH 397
            +IL+AGG G S   +IL   L 
Sbjct: 7   PMILIAGGTGFSYARSILLTALA 29

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 12/96 (12%), Positives = 29/96 (30%)

Query: 376 LILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 435
              VAGG G++P ++++  +       ++ +   V     +   +EL  L    +     
Sbjct: 11  RYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVK 70

Query: 436 FFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY 471
                 + +         +   E+ E          
Sbjct: 71  ACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYL 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	658
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.46
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.42
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.39
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.37
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.35
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.24
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.2
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.17
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.17
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.08
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	99.08
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.06
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.05
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.05
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.03
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.0
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	98.99
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	98.92
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	98.85
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	98.8
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.79
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	98.77
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	98.7
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	98.59
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	98.57
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	98.57
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	98.49
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	98.41
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	98.37
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	98.16
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	96.98
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	91.1
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	82.46

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.46  E-value=1.5e-13  Score=125.11  Aligned_cols=72  Identities=21%  Similarity=0.442  Sum_probs=56.2

Q ss_pred             cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEc
Q 006160          371 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  450 (658)
Q Consensus       371 ~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT  450 (658)
                      +..+.+|||||||||||+++++++++++.       .++++|+|++|+.+++.+.+++... .    .+..+++++.+++
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~-------~~~i~li~~~r~~~~l~~~~~~~~~-~----~~~~~~~~~~~~~   70 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP-------PRQVVFVHGARNSAVHAMRDRLREA-A----KTYENLDLFVFYD   70 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS-------CCCEEEEEEESCSSSCHHHHHHHHH-H----HHCTTEEEEEEES
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC-------CCcEEEEeeccChhhhhhHHHHHHH-H----HhCCCeEEEEEEc
Confidence            45667999999999999999999876432       3579999999999999776655432 1    2445789999999


Q ss_pred             CCCC
Q 006160          451 RETE  454 (658)
Q Consensus       451 ~~~~  454 (658)
                      ++..
T Consensus        71 ~~~~   74 (142)
T d1cqxa3          71 QPLP   74 (142)
T ss_dssp             SCCT
T ss_pred             ccCC
Confidence            8754

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.42  E-value=8.3e-13  Score=120.79  Aligned_cols=71  Identities=20%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEc
Q 006160          371 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  450 (658)
Q Consensus       371 ~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT  450 (658)
                      ...+.+|||||||||||+++++++++++..      .++|+|+|++|+.+|+.+.+++. ++.    .+..++++...++
T Consensus         6 ~~~~p~vliagGtGItP~~s~l~~~~~~~~------~~~v~l~~~~r~~~d~~~~~el~-~l~----~~~~~~~~~~~~~   74 (141)
T d1tvca2           6 RGMAPRYFVAGGTGLAPVVSMVRQMQEWTA------PNETRIYFGVNTEPELFYIDELK-SLE----RSMRNLTVKACVW   74 (141)
T ss_dssp             CSSSCEEEEEESSTTHHHHHHHHHHHHHTC------CSCEEEEEECSSSTTCCCHHHHH-HHH----HHSSSCEEEECCS
T ss_pred             CCCCcEEEEECchhHHHHHHHHHHHHHcCC------CCceEEEeecccchhhhhHHHHH-HHH----hhccccccceeec
Confidence            345679999999999999999999988652      35799999999999997766543 321    2334677766666


Q ss_pred             CC
Q 006160          451 RE  452 (658)
Q Consensus       451 ~~  452 (658)
                      ++
T Consensus        75 ~~   76 (141)
T d1tvca2          75 HP   76 (141)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.39  E-value=5.1e-13  Score=120.90  Aligned_cols=71  Identities=23%  Similarity=0.347  Sum_probs=55.0

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  451 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~  451 (658)
                      ..+.+||||||+||||+++++++++++..      .++|+|+|++|+.+++.+.+++. ++.    .+..++++...+++
T Consensus         4 ~~rplv~IAgG~GItP~~s~l~~~~~~~~------~~~i~l~~~~r~~~d~~~~~el~-~l~----~~~~~~~~~~~~s~   72 (133)
T d1krha2           4 VKRPVLMLAGGTGIAPFLSMLQVLEQKGS------EHPVRLVFGVTQDCDLVALEQLD-ALQ----QKLPWFEYRTVVAH   72 (133)
T ss_dssp             CSSCEEEEEEGGGHHHHHHHHHHHHHHCC------SSCEEEEEEESSGGGCCCHHHHH-HHH----HHCTTEEEEEEETT
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHcCC------CCceEEEEeecchhHHHHHHHHH-HHH----HhCCceeeeeeeec
Confidence            34679999999999999999999987652      35799999999999997766553 221    23456888777877


Q ss_pred             CC
Q 006160          452 ET  453 (658)
Q Consensus       452 ~~  453 (658)
                      +.
T Consensus        73 ~~   74 (133)
T d1krha2          73 AE   74 (133)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=3.8e-13  Score=122.74  Aligned_cols=70  Identities=13%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCC
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  452 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~  452 (658)
                      .+.+||||||+||||+++++++++.+.+      .+++.|+|++|+.+++.+.+++.+. .    .+..+++++.+++++
T Consensus         6 d~plv~IagGtGiaP~~s~l~~l~~~~~------~~~i~l~~~~r~~~d~~~~~el~~~-~----~~~~~~~~~~~~~~~   74 (143)
T d1gvha3           6 DTPVTLISAGVGQTPMLAMLDTLAKAGH------TAQVNWFHAAENGDVHAFADEVKEL-G----QSLPRFTAHTWYRQP   74 (143)
T ss_dssp             TCCEEEEEEGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCTTTCCSHHHHHHH-H----HTSSSEEEEEEESSC
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHcCC------CceEEEEeecCCHHHHHHHHHHHHH-H----HhCCceEEEEEEecc
Confidence            4569999999999999999999987652      3679999999999999877666532 1    344578888888866


Q ss_pred             C
Q 006160          453 T  453 (658)
Q Consensus       453 ~  453 (658)
                      .
T Consensus        75 ~   75 (143)
T d1gvha3          75 S   75 (143)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.4e-12  Score=112.27  Aligned_cols=77  Identities=21%  Similarity=0.285  Sum_probs=65.0

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  200 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~  200 (658)
                      .++|.+++.+++++++++++.+..+.|+||||+.|.++.   .++||||++|+|.+ ++.++|+||..  |.+|++|.+.
T Consensus         4 ~~~V~~i~~lt~~v~~~~l~~~~~~~f~~GQ~v~l~~~~---~~~r~ySias~p~~-~~~l~l~ir~~~~g~~s~~l~~~   79 (97)
T d1qfja1           4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPDE-KGFIELHIGASEINLYAKAVMDR   79 (97)
T ss_dssp             EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTTS-TTCEEEEEC------CCHHHHHH
T ss_pred             EEEEEEEEEcCCCEEEEEEeCCccCccCCCCEEEEEEcC---CCcEEEEEEEcCCC-CcEEEEEEeEccCCchhHhHhhc
Confidence            578999999999999999998888999999999999875   35799999999965 48999999977  8899999887


Q ss_pred             Hhh
Q 006160          201 ILS  203 (658)
Q Consensus       201 ~~~  203 (658)
                      ++.
T Consensus        80 l~~   82 (97)
T d1qfja1          80 ILK   82 (97)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            754

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.4e-12  Score=115.39  Aligned_cols=119  Identities=17%  Similarity=0.279  Sum_probs=84.3

Q ss_pred             CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160          361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  440 (658)
Q Consensus       361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~  440 (658)
                      .|.+........+++++|||||+||||+++++++++++..     ..++++|+|++|+.+++.+.+++. ++..   ...
T Consensus         6 ~p~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~-----~~~~i~L~~~~r~~~~~~~~~el~-~l~~---~~~   76 (147)
T d1umka2           6 RPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD-----DHTVCHLLFANQTEKDILLRPELE-ELRN---KHS   76 (147)
T ss_dssp             CSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEEEEEEESSGGGCTTHHHHH-HHHH---HCT
T ss_pred             cCCCCCCcccccCCeEEEEECCeecchHHHHHHHHHhcCC-----CCceEEEEEEeCccccchhHHHHh-hhhh---hcC
Confidence            5666655545678999999999999999999999986542     246899999999999986665543 3321   123


Q ss_pred             CceEEEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          441 LNLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       441 ~~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      .++++...++++...+ ...+.+...++.+..+...++..+.+|||+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGP~~m  125 (147)
T d1umka2          77 ARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPM  125 (147)
T ss_dssp             TTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCGGGCCEEEEESCHHH
T ss_pred             cceEEEEEecccccCcccceeehHHHHHHHhcCCCcCCcEEEEeCCHHH
Confidence            5688888887765432 22344444445555555567788999999964

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.8e-11  Score=111.86  Aligned_cols=51  Identities=29%  Similarity=0.367  Sum_probs=43.3

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      +.+++|||||||||||++|++++++...      ..++|.|+|++|+.+++.+.+++
T Consensus         5 ~~k~lvlIa~GtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~~~d~~~~~el   55 (148)
T d1fdra2           5 HCETLWMLATGTAIGPYLSILRLGKDLD------RFKNLVLVHAARYAADLSYLPLM   55 (148)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHHHHCCSCT------TCSEEEEEEEESSGGGCTTHHHH
T ss_pred             CCCEEEEEEcCeEHHHHHHHHHHHHHhC------CCCcEEEEEecCcHHHHHHHHHh
Confidence            4689999999999999999999886543      24789999999999999776654

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.17  E-value=3.2e-11  Score=104.13  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             EEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          124 VDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       124 ~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      -+|++++.++++++.++++.+..++|+||||+.|.++..++..+|||||+|+|.+  +.+.++||++  |.+|+.|+
T Consensus         6 ~kV~~v~~~t~~~~~~~l~~~~~~~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~~--~~~~~~i~~~~~G~~S~~L~   80 (99)
T d1a8pa1           6 ERVLSVHHWNDTLFSFKTTRNPSLRFENGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKVQNGPLTSRLQ   80 (99)
T ss_dssp             EEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECCSSCSSHHHHT
T ss_pred             EEEEEEEecCCCEEEEEecCCCCCccCCCcEEEEeccCCCceeEeeccccCCCCC--CcEEEEEEEeCCCChhHHHH
Confidence            3578888889999999999999999999999999999777788999999999975  7889988876  88999884

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.17  E-value=1.1e-10  Score=102.79  Aligned_cols=51  Identities=24%  Similarity=0.458  Sum_probs=43.3

Q ss_pred             cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          371 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       371 ~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      .+.+++||||||+||||++++++++.++.       .+++.++|++|+.+++.+.+++
T Consensus         6 ~~~~~~v~IagGtGiaP~~s~~~~l~~~~-------~~~~~l~~~~r~~~~~~~~~~l   56 (120)
T d2piaa2           6 KRAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLTRDPEGTAFFDEL   56 (120)
T ss_dssp             TTCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEESCGGGCTTHHHH
T ss_pred             CCCCCEEEEEecccHHHHHHHHHHHHHhc-------CCCeEEEEeeCCHHHhhhhHHH
Confidence            35689999999999999999999997653       2579999999999999776654

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.08  E-value=2.3e-10  Score=98.26  Aligned_cols=74  Identities=14%  Similarity=0.184  Sum_probs=63.0

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  197 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L  197 (658)
                      ..+|++++.+++++.+++++.+..   +.|+||||+.|.+++..  .+|+||++|++.+  +.+.++||..  |.+|+.|
T Consensus         5 ~~~v~~v~~lt~~v~~~~l~~~~~~~~~~f~pGQ~v~l~i~g~~--~~r~ys~~~~~~~--~~~~~~i~~~~~G~~s~~l   80 (100)
T d1krha1           5 EGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGTT--ETRSYSFSSQPGN--RLTGFVVRNVPQGKMSEYL   80 (100)
T ss_dssp             EEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTSS--CEEEEECCSCTTC--SEEEEEEECCTTCHHHHHH
T ss_pred             EEEEEEEEEcCCCeEEEEEEcCCCCcCCCCCCCEEEEEEECCcc--eeEEeeccCCCcc--CceEEEEEEeeCCchhhhh
Confidence            578999999999999999988743   78999999999998643  6899999999864  7899999987  8899988


Q ss_pred             HHH
Q 006160          198 RDY  200 (658)
Q Consensus       198 ~~~  200 (658)
                      ++.
T Consensus        81 ~~~   83 (100)
T d1krha1          81 SVQ   83 (100)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            654

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.08  E-value=7e-11  Score=103.45  Aligned_cols=77  Identities=21%  Similarity=0.332  Sum_probs=65.9

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC------CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--Cch
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA------NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  193 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~------~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~  193 (658)
                      ..++|++++.+++++++++++.|+      .++|+||||+.|.++..  -++||||++|+|.+ ++.++|+||..  |.+
T Consensus        11 ~~a~V~~~~~lt~di~~l~l~~p~~~~~~~~~~f~pGQ~v~l~~~g~--~~~R~ySias~p~~-~~~~~~~i~~~~~G~~   87 (109)
T d1tvca1          11 FEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGT--DVSRSYSPANLPNP-EGRLEFLIRVLPEGRF   87 (109)
T ss_dssp             EEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSC--SSSEEECCBCCSSS-SCCEEEEECCCTTSSS
T ss_pred             EEEEEEEEEEeCCCeEEEEEECCCcccccccccCCCCcEEEEEECCc--cccccceeccCCcC-CceeEEEEEEeCCchH
Confidence            357888999999999999999874      47899999999998753  36899999999975 47999999997  889


Q ss_pred             HHHHHHHH
Q 006160          194 TENLRDYI  201 (658)
Q Consensus       194 T~~L~~~~  201 (658)
                      |+.|++.+
T Consensus        88 S~~l~~~l   95 (109)
T d1tvca1          88 SDYLRNDA   95 (109)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhhC
Confidence            99998765

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.06  E-value=2.2e-10  Score=105.35  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccC---CCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEE
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEG---KSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIY  448 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~---~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iy  448 (658)
                      ..+++||||||+|||||+|+|++++++....   ......++.|+|++|+.+++.+.+++.. ...   .......+.+.
T Consensus         5 ~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~-~~~---~~~~~~~~~~~   80 (162)
T d2bmwa2           5 PEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEE-IQQ---KYPDNFRLTYA   80 (162)
T ss_dssp             TTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHH-HHH---HCTTTEEEEEE
T ss_pred             CCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHH-HHH---hcCCceEEEEE
Confidence            4579999999999999999999998654221   1123467999999999998866555432 211   12233555555


Q ss_pred             EcCC
Q 006160          449 VTRE  452 (658)
Q Consensus       449 VT~~  452 (658)
                      .++.
T Consensus        81 ~~~~   84 (162)
T d2bmwa2          81 ISRE   84 (162)
T ss_dssp             ETTT
T ss_pred             eecc
Confidence            5544

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5.2e-10  Score=96.29  Aligned_cols=73  Identities=18%  Similarity=0.126  Sum_probs=62.9

Q ss_pred             eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      ..+|++++.+++++.+++++.| .+.|+||||+.|.++..+...+|||||+|.|.+  +.++++||..  |.+|+.|.
T Consensus         5 ~a~V~~v~~~t~~v~~l~~~~p-~~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~--~~~~~~vk~~~~G~~S~~l~   79 (99)
T d1fdra1           5 TGKVTKVQNWTDALFSLTVHAP-VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTVPDGKLSPRLA   79 (99)
T ss_dssp             EEEEEEEEECSSSEEEEEEECC-CCCCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECCTTCSSHHHHH
T ss_pred             EEEEEEEEEcCCCEEEEEEcCC-CCCCCCCcEEEeccCCCCCcEEEEEccCCCCCC--ceeEEEEEEecCcHHHHHHh
Confidence            5789999999999999999976 589999999999999888888999999999875  7899999997  88999884

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.05  E-value=2.4e-10  Score=98.32  Aligned_cols=76  Identities=21%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  198 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~  198 (658)
                      ..++|++++.+.+++++|+++.+. ...++||||+.|+++..+...++|||+++.+.+ +++++|++|..  |.+|+.|.
T Consensus         5 ~~~~V~~~~~~~~~i~~l~l~~~~~~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~-~~~i~~~i~~~~~g~~t~~l~   83 (101)
T d1ep3b1           5 EMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGDETTGTYKLS   83 (101)
T ss_dssp             EEEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCCTTSHHHHHH
T ss_pred             eeEEEEEEEEecCCEEEEEEECCChhhccCCCceEEEEccCCccEeeccceeeeCCCC-CcEEEEEEeecCcchhhHHHH
Confidence            468899999999999999999775 357999999999999877777899999999864 58999999987  45788763

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.03  E-value=6.2e-10  Score=102.46  Aligned_cols=77  Identities=21%  Similarity=0.251  Sum_probs=55.0

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  451 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~  451 (658)
                      ..+++||||||+||||++|+|++++.+..... ...+++.|++++|+.+|+.+.+++.+ +..   .....+.+....++
T Consensus         7 ~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~-~~~~~i~l~~g~r~~~d~~y~~e~~~-~~~---~~~~~~~~~~~~s~   81 (160)
T d1fnda2           7 PNATIIMLGTGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPTSSSLLYKEEFEK-MKE---KAPDNFRLDFAVSR   81 (160)
T ss_dssp             TTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTB-CCCSEEEEEEEESSGGGCTTHHHHHH-HHH---HCTTTEEEEEEETT
T ss_pred             CCCCEEEEECchhHHHHHHHHHHHHHhhcccc-cCCceEEEEeecCcHHHHHHHHHHHH-HHH---hcCCceeEEEEEcc
Confidence            56789999999999999999999986543221 23578999999999999877665543 221   23345666666665


Q ss_pred             CC
Q 006160          452 ET  453 (658)
Q Consensus       452 ~~  453 (658)
                      +.
T Consensus        82 ~~   83 (160)
T d1fnda2          82 EQ   83 (160)
T ss_dssp             TC
T ss_pred             ch
Confidence            53

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=5.8e-10  Score=100.22  Aligned_cols=104  Identities=19%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  451 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~  451 (658)
                      ..+.+||||||+||||+++++++++++..      .++|+|+|++|+.+++.+.+++. ++.    .+...+......++
T Consensus         4 ~~rplv~IagGtGiaP~~s~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l~-~l~----~~~~~~~~~~~~~~   72 (135)
T d1qfja2           4 EERPMILIAGGTGFSYARSILLTALARNP------NRDITIYWGGREEQHLYDLCELE-ALS----LKHPGLQVVPVVEQ   72 (135)
T ss_dssp             SSSCEEEEEETTCHHHHHHHHHHHHHHCT------TCCEEEEEEESSGGGCTTHHHHH-HHH----HHCTTEEEEEEESS
T ss_pred             CCCCEEEEECceeHHHHHHHHHHHHHccc------ccceeEEEecccHhHHHHHHHHH-HHH----HhcCccceeeeecc
Confidence            56789999999999999999999987652      35799999999999997766553 222    23345666655555


Q ss_pred             CCCCCCC-cccccccccccccCCCCCCceeEeecCCCc
Q 006160          452 ETEPPLE-EGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       452 ~~~~~~~-~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      ..+.+.. .+.+...+. +-.+... ...+.+|||+..
T Consensus        73 ~~~~~~~~~g~~~~~~~-~~~~~~~-~~~~yvCGp~~m  108 (135)
T d1qfja2          73 PEAGWRGRTGTVLTAVL-QDHGTLA-EHDIYIAGRFEM  108 (135)
T ss_dssp             CCTTCCSEESCHHHHHH-HHCSCCT-TCEEEEESCHHH
T ss_pred             cCcccccccCchHHHHH-HhccCcc-cCceEeeCCHHH
Confidence            5443222 222222222 2223333 455779999744

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=98.99  E-value=6.6e-10  Score=100.31  Aligned_cols=109  Identities=16%  Similarity=0.271  Sum_probs=70.9

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  451 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~  451 (658)
                      +.+++||||||+||||++++++++++....    ..++++|+|++|+.+++.+.+++.....    .......+..+...
T Consensus        11 ~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~----~~~~v~l~~g~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~   82 (146)
T d2cnda2          11 NARRLAMICGGSGITPMYQIIQAVLRDQPE----DHTEMHLVYANRTEDDILLRDELDRWAA----EYPDRLKVWYVIDQ   82 (146)
T ss_dssp             CCSEEEEEEEGGGHHHHHHHHHHHHHTTTT----CCCEEEEEEEESCGGGCTTHHHHHHHHH----HCTTTEEEEEEESC
T ss_pred             CCCEEEEEeceEEHhHHHHHHHHHHHhCCc----cCceEEEEEeecccccchhHHHHhhHHH----hCCCceeEEEeecc
Confidence            467999999999999999999999876422    2468999999999999977765543211    12223444433333


Q ss_pred             CCCCC----CCcccccccccccccCCCCCCceeEeecCCCc
Q 006160          452 ETEPP----LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       452 ~~~~~----~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      .....    ...+.+...++.+..+...+...+.+|||+..
T Consensus        83 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~~m  123 (146)
T d2cnda2          83 VKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPM  123 (146)
T ss_dssp             CSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHH
T ss_pred             ccCcccccccccCccchHHHHHhcccCCCCcEEEEECCHHH
Confidence            32211    11222333344455555667788999999854

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=98.92  E-value=2.7e-09  Score=93.15  Aligned_cols=79  Identities=15%  Similarity=0.144  Sum_probs=63.6

Q ss_pred             cceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCC--CCCCcceeEEeeeCCCCCCCeEEEEEEEc-----
Q 006160          121 RRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRE--LSWLQWHPFSVSSSPLEGKYHSSVLIKVL-----  190 (658)
Q Consensus       121 ~~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~--is~~q~HPFTIaS~p~~~~~~lsl~IR~~-----  190 (658)
                      ++.++|++++.+++++.+++++.+..   +.|+||||+.|.++.  .+...+|+|||+|+|.+  +.+++.||..     
T Consensus         4 ~r~~~V~~~~~~t~dv~~~~l~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~~--~~~~~~v~~~~~~~~   81 (111)
T d1cqxa2           4 WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNG--RTYRISVKREGGGPQ   81 (111)
T ss_dssp             CEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCS--SCEEEEEECCCBTTB
T ss_pred             ceEEEEEEEEEeCCCcEEEEEEeCCcCcccCCCCCCEEEEEeecCCCcceeeeeccccCCccC--CCeEEEEEEecCCCc
Confidence            45788999999999999999986532   689999999999863  34567899999999864  6899999874     


Q ss_pred             --CchHHHHHHHH
Q 006160          191 --GEWTENLRDYI  201 (658)
Q Consensus       191 --G~~T~~L~~~~  201 (658)
                        |..|+.|++.+
T Consensus        82 ~~G~~S~~l~~~l   94 (111)
T d1cqxa2          82 PPGYVSNLLHDHV   94 (111)
T ss_dssp             CCCHHHHHHHHHC
T ss_pred             ccchhHHHHHhcC
Confidence              66787776654

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=7.8e-09  Score=89.54  Aligned_cols=80  Identities=10%  Similarity=0.108  Sum_probs=64.5

Q ss_pred             ccceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEc--Cc
Q 006160          120 SRRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GE  192 (658)
Q Consensus       120 ~~~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~  192 (658)
                      ..+..+|++++.+++++.+++++.+.   ...|+||||+.|.++..+  ....++||++|.+.+  +.++|.||..  |.
T Consensus         5 g~~~~~v~~~~~~t~~~~~~~l~~~d~~~~~~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~~--~~~~i~vk~~~~G~   82 (107)
T d1gvha2           5 GTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDG--KGYRIAVKREEGGQ   82 (107)
T ss_dssp             SEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCCS--SCEEEEEECCTTCH
T ss_pred             CCEEEEEEEEEEeCCCeEEEEEEcCCcCcccCCCCCCEEEEEeeccccCceEEeeccccCCCCC--CceEEEEEEcCCcc
Confidence            33578899999999999999998543   268999999999997433  346799999998864  7899999986  88


Q ss_pred             hHHHHHHHH
Q 006160          193 WTENLRDYI  201 (658)
Q Consensus       193 ~T~~L~~~~  201 (658)
                      +|+.|++.+
T Consensus        83 ~S~~l~~~l   91 (107)
T d1gvha2          83 VSNWLHNHA   91 (107)
T ss_dssp             HHHHHHHTC
T ss_pred             hhHHHHhcC
Confidence            999887654

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=98.80  E-value=4.1e-09  Score=96.27  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCC
Q 006160          373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  452 (658)
Q Consensus       373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~  452 (658)
                      ..++||||||+||||++|+|++++.+.... ....+++.|+|++|+.+|+.+.+++.+. ..   .....+......++.
T Consensus         3 ~~plllIa~GtGIaP~~s~l~~~~~~~~~~-~~~~~~i~l~~g~r~~~d~~y~~e~~~~-~~---~~~~~~~~~~~~~~~   77 (154)
T d1jb9a2           3 NATHIMIATGTGVAPFRGYLRRMFMEDVPN-YRFGGLAWLFLGVANSDSLLYDEEFTSY-LK---QYPDNFRYDKALSRE   77 (154)
T ss_dssp             TCEEEEEEEGGGGHHHHHHHHHHHTEECTT-CCCCSEEEEEEEESSGGGCSSHHHHHHH-HH---HCTTTEEEEEEETTT
T ss_pred             CCCEEEEEcceeHHHHHHHHHHHHHhcccc-ccCCceEEEEEEecccchhHHHHHHHHH-HH---hCCCCEEEEEEeccC
Confidence            468999999999999999999998754322 1235689999999999998766655432 11   122334554455554


Q ss_pred             CCCCCCccccccccccc----ccCCCCCCceeEeecCCCchH
Q 006160          453 TEPPLEEGELHKTMSSS----IYPVPSGCAMSVLVGTGNNVW  490 (658)
Q Consensus       453 ~~~~~~~~~~~~~~v~~----~~P~~~d~~~~~v~Gp~~~~w  490 (658)
                      ...+..........+..    ......++..+.+|||+..+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~mm~  119 (154)
T d1jb9a2          78 QKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMP  119 (154)
T ss_dssp             CC----CCCCHHHHHHHTHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred             CcCcCCcccccchHHHHhHHHhhhcccCCCEEEEECCHHHHH
Confidence            43222221111111100    000011456899999997754

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.79  E-value=1.4e-08  Score=93.96  Aligned_cols=50  Identities=18%  Similarity=0.393  Sum_probs=42.3

Q ss_pred             cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160          371 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  428 (658)
Q Consensus       371 ~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~  428 (658)
                      ...++++|||||+||||++++++++.++.        ++++|+|++|+.+++.+.+++
T Consensus         6 ~~~~kvllIAgG~GitPl~sm~~~l~~~~--------~~v~l~~g~r~~~~~~~~~el   55 (160)
T d1ep3b2           6 TSTDKILIIGGGIGVPPLYELAKQLEKTG--------CQMTILLGFASENVKILENEF   55 (160)
T ss_dssp             CTTSEEEEEEEGGGSHHHHHHHHHHHHHT--------CEEEEEEEESSGGGCCCHHHH
T ss_pred             CCCCEEEEEEeeeeHHHHHHHHHHHHhcc--------CceEEEEecCCHHHHHHHHHH
Confidence            45678999999999999999999987543        479999999999998665544

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=5.2e-09  Score=97.20  Aligned_cols=78  Identities=19%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEc
Q 006160          371 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  450 (658)
Q Consensus       371 ~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT  450 (658)
                      +...++||||||+||||++|+|++++...+... ....++.++|.+|+.++...+.+.+.+..    .....+++++.++
T Consensus         7 ~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~s   81 (165)
T d1f20a2           7 NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKG-MNPCPMVLVFGCRQSKIDHIYREETLQAK----NKGVFRELYTAYS   81 (165)
T ss_dssp             CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEESCTTTSCTTHHHHHHHH----HTTSEEEEEEEES
T ss_pred             CCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcC-CCCCCeEEEEeccccHHHHHHHHHHHHHH----hcCCceEEEEEEe
Confidence            345689999999999999999998765432211 12345677777766665433333333322    2344567777777


Q ss_pred             CCC
Q 006160          451 RET  453 (658)
Q Consensus       451 ~~~  453 (658)
                      ++.
T Consensus        82 r~~   84 (165)
T d1f20a2          82 REP   84 (165)
T ss_dssp             SCT
T ss_pred             ccc
Confidence            654

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=4e-09  Score=96.38  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  451 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~  451 (658)
                      ..+++||||||+||||++|+|+++..+..      .+++.++|++|+.++...+++.+.+..    .+...+.+++.+++
T Consensus         5 ~~~plvlIa~GtGIaP~~s~l~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~el~~~~----~~~~~~~~~~~~s~   74 (153)
T d1ddga2           5 PETPVIMIGPGTGIAPFRAFMQQRAADEA------PGKNWLFFGNPHFTEDFLYQVEWQRYV----KEGVLTRIDLAWSR   74 (153)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCHHHHCTTHHHHHHHH----HTTSCCEEEEEETT
T ss_pred             CCCCEEEEECchhHHHHHHHHHHHHHhcC------CCceEEeecccCcHHHHHhHHHHHHHH----HcCCCceEEEEEEe
Confidence            45689999999999999999999987653      356788888876665544444444432    34566888888888


Q ss_pred             CCCCCCCccccc-c--cccccccCCCCCCceeEeecCCCc
Q 006160          452 ETEPPLEEGELH-K--TMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       452 ~~~~~~~~~~~~-~--~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      +........... .  .++...   ..+.....+|||+.-
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~yiCG~p~~  111 (153)
T d1ddga2          75 DQKEKVYVQDKLREQGAELWRW---INDGAHIYVCGDANR  111 (153)
T ss_dssp             SSSSCCCHHHHHHHTHHHHHHH---HHTTCEEEEEECTTT
T ss_pred             cccCcccccchHHHHHHHHHhh---hccCCEEEEECCCcc
Confidence            765332221111 0  111111   123556788998754

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.59  E-value=4.6e-08  Score=89.24  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHH
Q 006160          370 HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK  430 (658)
Q Consensus       370 ~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~  430 (658)
                      +...+++|||||||||||++|++++++.+..      .+++.++|++|+.+++.+.+++..
T Consensus         4 ~~p~~~lvlIagGtGIaP~~sil~~~~~~~~------~~~~~l~~g~r~~~~~~~~~el~~   58 (158)
T d1a8pa2           4 LLPGKHLYMLSTGTGLAPFMSLIQDPEVYER------FEKVVLIHGVRQVNELAYQQFITE   58 (158)
T ss_dssp             BCCCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTHHHHHT
T ss_pred             CCCCCCEEEEEchhhHHHHHHHHHHHHHhCC------CCceeeeeccccHHHHhhHHHHHH
Confidence            3456899999999999999999999877653      368999999999999988776653

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=98.57  E-value=9.3e-08  Score=83.43  Aligned_cols=68  Identities=18%  Similarity=0.105  Sum_probs=58.6

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL  190 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~  190 (658)
                      ..+++++.+.++.++..+++..|..   +.+.||||+.|.++..+....++||++|.+.+ ++.++|.||..
T Consensus         3 ~~~klv~~~~it~d~~~~~f~~p~~~~~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~~~~~~~ik~~   73 (114)
T d2cnda1           3 IHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVY   73 (114)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC
T ss_pred             EEEEEEEEEEcCCCeEEEEEECCCcccccCccceEEEEEEeecccceEEeeeccCCCCCC-CCEEEEEEEec
Confidence            4688999999999999999987653   67899999999998777777899999999875 58999999974

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=1.9e-08  Score=93.69  Aligned_cols=108  Identities=18%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHHHHhccCCccCCCCceEEEEEEc
Q 006160          372 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESICPFFSDKLNLETFIYVT  450 (658)
Q Consensus       372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~l~ell~~~~~~~~~l~I~iyVT  450 (658)
                      ....+||||||+|||||+|+|++.....+.+  ....++.|+|++|+.+ |+.+-++ +++..    .+....++++..+
T Consensus         6 ~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~--~~~g~~~L~~G~R~~~~d~~y~~e-l~~~~----~~~~~~~~~~a~S   78 (160)
T d1ja1a3           6 STTPVIMVGPGTGIAPFMGFIQERAWLREQG--KEVGETLLYYGCRRSDEDYLYREE-LARFH----KDGALTQLNVAFS   78 (160)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHHHTT--CCCCCEEEEEEESCTTTCCTTHHH-HHHHH----HTTSSSEEEEEET
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHHHHcC--CCCCCEEEEEecCCccccHHHHHH-HHHHH----HcCCCceeEEEee
Confidence            4568999999999999999999865443322  2356899999999876 4544433 33332    2344567888888


Q ss_pred             CCCCCCCCcccccc---cccccccCCCCCCceeEeecCCCc
Q 006160          451 RETEPPLEEGELHK---TMSSSIYPVPSGCAMSVLVGTGNN  488 (658)
Q Consensus       451 ~~~~~~~~~~~~~~---~~v~~~~P~~~d~~~~~v~Gp~~~  488 (658)
                      ++............   +.+.....  .++....+|||...
T Consensus        79 r~~~~~~yvq~~~~~~~~~~~~~l~--~~~~~vYvCG~~~~  117 (160)
T d1ja1a3          79 REQAHKVYVQHLLKRDREHLWKLIH--EGGAHIYVAGDARN  117 (160)
T ss_dssp             TSSSSCCCHHHHHHHTHHHHHHHHH--TSCCEEEEEEETTT
T ss_pred             ccccCccccchHHHHHHHHHHHHHh--cCCcEEEEeCCCcc
Confidence            87653322221111   11222111  13567899998765

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=98.49  E-value=2.6e-07  Score=79.63  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=64.6

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCC--C-CcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--Cch-HH
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPAN--L-RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW-TE  195 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~--~-~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~-T~  195 (658)
                      .+++|++++.+..++.+++++.+.+  + .|+||||+.|.++..   .+++|||+|+|.+ .+.++|+||..  |.+ |+
T Consensus         9 ~~~~V~~~~~~t~di~~~~l~~~~g~~lp~f~pGQ~v~v~~~~~---~~R~YSl~s~p~~-~~~~~i~Vk~~~~g~~~S~   84 (103)
T d2piaa1           9 LRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQE-RNRYVIAVKRDSNGRGGSI   84 (103)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTTC-CSEEEEEEECCTTSCSHHH
T ss_pred             EEEEEEEEEEcCCCeEEEEEECCCCCcCCCCCCCceEEEEEecc---eeEEEEEecCCCC-CCEEEEEEEEECCCccchH
Confidence            4688999999999999999998753  3 799999999999753   4699999999865 48999999997  444 78


Q ss_pred             HHHHHHhhc
Q 006160          196 NLRDYILSK  204 (658)
Q Consensus       196 ~L~~~~~~~  204 (658)
                      .|++.+...
T Consensus        85 ~l~~~l~~G   93 (103)
T d2piaa1          85 SFIDDTSEG   93 (103)
T ss_dssp             HHHHSCCTT
T ss_pred             HHHhcCCCC
Confidence            887766443

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.7e-07  Score=79.91  Aligned_cols=67  Identities=19%  Similarity=0.223  Sum_probs=57.8

Q ss_pred             ceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEE
Q 006160          122 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV  189 (658)
Q Consensus       122 ~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~  189 (658)
                      ..+++++.+.+++++.+++++.+..   +.+.||||+.++++..+....++||++|.+.+ .+.+++.||.
T Consensus        13 ~~~~v~~~~~it~d~~~f~f~~p~~~~~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~g~~~~~vk~   82 (124)
T d1umka1          13 YPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKV   82 (124)
T ss_dssp             EEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEEC
T ss_pred             EEEEEEEEEEeCCCeEEEEEEcCCcccccccceeeEEEEEecccceeEEEeeccCCcccC-CceEEEEEEe
Confidence            4789999999999999999987653   57999999999998766677899999999865 5899999995

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.37  E-value=1e-06  Score=79.55  Aligned_cols=77  Identities=19%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             eEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCC----CCCcceeEEeeeCCCCC---CCeEEEEEEEc
Q 006160          123 TVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLEG---KYHSSVLIKVL  190 (658)
Q Consensus       123 ~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i----s~~q~HPFTIaS~p~~~---~~~lsl~IR~~  190 (658)
                      ..++++++.+.     .++.+|.++.+..+.|.||||+.|.+|..    .....+.|||||+|...   ...+++.||..
T Consensus        21 ~a~V~~~~~lt~~~~~~~t~~i~~~~~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~  100 (136)
T d1fnda1          21 VGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL  100 (136)
T ss_dssp             EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSSCEEEEEEECC
T ss_pred             EEEEEeEEEccCCCCCceEEEEecccCCCCcccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCCcEEEEEEEEe
Confidence            56788887774     25888999988889999999999999742    34678999999998642   36799999864


Q ss_pred             -----------CchHHHHHH
Q 006160          191 -----------GEWTENLRD  199 (658)
Q Consensus       191 -----------G~~T~~L~~  199 (658)
                                 |-.|+.|++
T Consensus       101 ~~~~~~~~~~~G~~S~~L~d  120 (136)
T d1fnda1         101 IYTNDAGETIKGVCSNFLCD  120 (136)
T ss_dssp             EEECTTSCEEECHHHHHHHT
T ss_pred             ecccCCCcCCCceEehhhcc
Confidence                       667777754

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=98.16  E-value=6e-06  Score=73.95  Aligned_cols=68  Identities=15%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             eEEEEEEEEec-----CceEEEEEeCCC-CCCcCCCcEEEEEeCCC----CCCcceeEEeeeCCCCC---CCeEEEEEEE
Q 006160          123 TVDVLSASCLP-----CGTVELVLSKPA-NLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLEG---KYHSSVLIKV  189 (658)
Q Consensus       123 ~~~v~sv~~l~-----~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~i----s~~q~HPFTIaS~p~~~---~~~lsl~IR~  189 (658)
                      .+++++++.+.     .++.++++..+. .+.|.||||+.|..+..    .....|.|||||+|.++   ...+++.||+
T Consensus        14 ~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~~~~~~~~Vk~   93 (133)
T d2bmwa1          14 IGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ   93 (133)
T ss_dssp             EEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred             EEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccccccccceeeeeecCCCcCCCCCccEEEEEEEe
Confidence            56788888774     248889988665 48999999999999842    34577999999998643   3579999996


Q ss_pred             c
Q 006160          190 L  190 (658)
Q Consensus       190 ~  190 (658)
                      .
T Consensus        94 ~   94 (133)
T d2bmwa1          94 L   94 (133)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=96.98  E-value=0.0028  Score=57.76  Aligned_cols=68  Identities=15%  Similarity=0.110  Sum_probs=53.5

Q ss_pred             eEEEEEEEEecC-----ceEEEEEeCCCCCCcCCCcEEEEEeCC------CCCCcceeEEeeeCCCCC---CCeEEEEEE
Q 006160          123 TVDVLSASCLPC-----GTVELVLSKPANLRYNALSFFFLQVRE------LSWLQWHPFSVSSSPLEG---KYHSSVLIK  188 (658)
Q Consensus       123 ~~~v~sv~~l~~-----~v~~l~i~~p~~~~~~PGQ~v~L~vp~------is~~q~HPFTIaS~p~~~---~~~lsl~IR  188 (658)
                      ..++++.+.|..     ++.++.+.....+.|.|||++-|..+.      ...++-|-|||||++...   ...+.++||
T Consensus        30 ~a~v~~n~~Lt~~~s~k~t~hie~dl~~~~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~  109 (157)
T d1jb9a1          30 TATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVR  109 (157)
T ss_dssp             EEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEE
T ss_pred             EEEEEeEEEcccCCCCceEEEEEecCCCCccEecCceEEEEcCCccccccCccCCcCEEEecCCCcCCCCCCCEEEEEEE
Confidence            467777777753     588899998888999999999999874      345678999999998643   246888888


Q ss_pred             Ec
Q 006160          189 VL  190 (658)
Q Consensus       189 ~~  190 (658)
                      ..
T Consensus       110 ~v  111 (157)
T d1jb9a1         110 RA  111 (157)
T ss_dssp             CC
T ss_pred             Ee
Confidence            64

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.04  Score=47.44  Aligned_cols=35  Identities=9%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             EEEEEeCChhhHHHHHHHH-HhcccCCCCCCceEEEEecccC
Q 006160          617 VGVIVCGPPSLQSSVAKEI-RSHSLMRECHDPIFHFHSHSFD  657 (658)
Q Consensus       617 VgV~~CGP~~m~~~V~~~~-~~~~~~~~~~~~~~~fhsesF~  657 (658)
                      --|++|||+.|.+.+.+.. .+..   ...+   ++|.|+|+
T Consensus        98 ~~~yvCGp~~m~~~~~~~L~~~~G---~~~~---~i~~E~F~  133 (135)
T d1qfja2          98 HDIYIAGRFEMAKIARDLFCSERN---ARED---RLFGDAFA  133 (135)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHSC---CCGG---GEECTHHH
T ss_pred             CceEeeCCHHHHHHHHHHHHHHcC---CCHH---HEEEEeeE
Confidence            3599999999999998764 5533   2222   56777775

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.46  E-value=0.54  Score=40.63  Aligned_cols=26  Identities=23%  Similarity=0.529  Sum_probs=22.6

Q ss_pred             ceEEEEEeCChhhHHHHHHHHHhccc
Q 006160          615 VDVGVIVCGPPSLQSSVAKEIRSHSL  640 (658)
Q Consensus       615 ~~VgV~~CGP~~m~~~V~~~~~~~~~  640 (658)
                      +.--|++|||++|.++|++.+.+...
T Consensus       112 ~~~~~yiCGp~~m~~~v~~~L~~~G~  137 (158)
T d1a8pa2         112 QDDRAMICGSPSMLDESCEVLDGFGL  137 (158)
T ss_dssp             TTEEEEEEECHHHHHHHHHHHHHTTC
T ss_pred             ccceEEEECCHHHHHHHHHHHHHcCC
Confidence            45679999999999999999988654