Citrus Sinensis ID: 006171

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
Protein Sequence
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRAHPSQSGQPGPSANEVIESLIMKSSV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEccccHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHccccEEEEEEEccccHHHHHHHHcccccccEEEEEccccccEEEEcccccHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccEEEEEEEEcccHHHHHHHHccccccHHHccccccccccccEEEEEEEccccccccEEEEcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEccccEEEEccHHHHHHHHHcccccccEEEEEEcccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEccccHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHcEEEEEEccccHHHHHHHccccccccEEEEEEccccccEEEEccccHHHHHHHHHHcccccccccccHHHHHHccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccEEEEEEEccHHHcHHHHHHccccccHHHcccccccccccEEEEEEEEccccHHHccccEccccHHHHHHHcccccHHHEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAGPTMISKVKAYWAPLILFGLGLFYQlvvlprsfppshydalgikpyssVEQVKEAYEKFSSkwnsgeeipstaDFLKIQYAYELLTdplwkrnydvygidEQLHILEKVREQygeesysridlplldatdhsvhafnvvtsedfpsifhdskpwliqvysdgsylcgqfSGAWKTIAALLEGIANTGMVELGDIRLATHlaerkpigqiffrrglpslvafppgckssdcmtrfegelSVDAVTDWFATAILKLPRIFyytkesmgknflaktgphKVKVIFFSktgeraspFVRQISRNYWAYASFAFVLWREEESSIWWNtfevesapaivflkdpgvkpvvyygsfnnsrlSEVMEQNKlqelpqlrsvtsmelgcdargysragsdttIWYCVILAGRLSPELNKMRETIRRVQETLlsddesnaadtdqslaPAAVAFRNKRLTfawldgeaqdrycsfylfsetsfetcgarrdmsdvpRLFIVRYKrnttedeakierkprNIWDamqeqevdpasqlvvryngsdeipQIAKWVSEIiqdgdskdlpfyraktpelvpedseplltRSAQSLFSKSIGMKQRIRNIMGQcydylgdpriGPALLLAALMSFGTIWLMrgqqrahpsqsgqpgpsaNEVIESLIMKSSV
Flexible Loop (DISEMBL)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSskwnsgeeIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKnflaktgpHKVKVIFFsktgeraspfVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARgysragsdttIWYCVILAGrlspelnkMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETsfetcgarrdmsdvprLFIVrykrnttedeakierkprniwdamqeqevdpaSQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTpelvpedsepllTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRAhpsqsgqpgpsanEVIESLIMKSSV
Low Complexity Region (SEG)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRAHPSQSGQPGPSANEVIESLIMKSSV
Disordered region (IsUnstruct)
******ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS**********************MELGCDARGYSRAGSDTTIWYCVILAGRLSP*********************************AAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKR*****************************QLVVRYNGSDEIPQIAKWVSEIIQDGD***LPFY**************************SIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMR******************************
Disordered Region (DISOPRED)
************YWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDE**************ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQE************************DTTIWYCVILAGR************RRVQETLLSDDESNAAD****LAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSE**************VPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIW***************************I*****
Disordered Region (DISEMBL)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRG**************SANEVIESLIMKSSV
Disordered Region (DISPRO)
****TMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHIL*KVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQ****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRAHPSQSGQPGPSANEVIESLIMKSSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	658	2.2.26 [Sep-21-2011]
Q498R3	793	DnaJ homolog subfamily C	yes	no	0.262	0.218	0.252	1e-10
Q9DC23	793	DnaJ homolog subfamily C	yes	no	0.262	0.218	0.252	1e-10
Q8IXB1	793	DnaJ homolog subfamily C	yes	no	0.258	0.214	0.251	4e-10
Q5R5L3	793	DnaJ homolog subfamily C	yes	no	0.258	0.214	0.245	1e-09
Q6NRT6	796	DnaJ homolog subfamily C	N/A	no	0.226	0.187	0.269	2e-09
Q5FVM7	771	DnaJ homolog subfamily C	no	no	0.542	0.463	0.244	3e-09
Q80TN4	772	DnaJ homolog subfamily C	no	no	0.542	0.462	0.241	5e-09
Q5RCM7	782	DnaJ homolog subfamily C	no	no	0.601	0.506	0.244	4e-08
Q5ZKZ4	777	DnaJ homolog subfamily C	no	no	0.240	0.203	0.282	3e-07
Q9Y2G8	782	DnaJ homolog subfamily C	no	no	0.282	0.237	0.272	5e-07

>sp|Q498R3|DJC10_RAT DnaJ homolog subfamily C member 10 OS=Rattus norvegicus GN=Dnajc10 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGLPSL 220
            G+ ++
Sbjct: 209 SGMAAV 214

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May be involved in disulfide formation. May act as a co-chaperone for Hspa5.
Rattus norvegicus (taxid: 10116)

>sp|Q9DC23|DJC10_MOUSE DnaJ homolog subfamily C member 10 OS=Mus musculus GN=Dnajc10 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGLPSL 220
            G+ ++
Sbjct: 209 SGMAAV 214

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May be involved in disulfide formation. May act as a co-chaperone for Hspa5.

Mus musculus (taxid: 10090)

>sp|Q8IXB1|DJC10_HUMAN DnaJ homolog subfamily C member 10 OS=Homo sapiens GN=DNAJC10 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 13/183 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  +  P+      DFLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHPDKN-PNNPNAHGDFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   +Y R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGL 217
            G+
Sbjct: 209 SGM 211

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May act as a co-chaperone for HSPA5.

Homo sapiens (taxid: 9606)

>sp|Q5R5L3|DJC10_PONAB DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 13/183 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  +  P+      +FLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHPDKN-PNNPNAHGNFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   +Y R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGL 217
            G+
Sbjct: 209 SGM 211

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May be involved in disulfide formation. May act as a co-chaperone for HSPA5.

Pongo abelii (taxid: 9601)

>sp|Q6NRT6|DJC10_XENLA DnaJ homolog subfamily C member 10 OS=Xenopus laevis GN=dnajc10 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +YD LG+   ++  ++++A++K + K   +  ++  +   FLKI  AYE+L D   ++ Y
Sbjct: 37  YYDLLGVSKAATNREIRQAFKKLALKLHPDKNKDPDAHNKFLKINRAYEVLKDEDLRKKY 96

Query: 97  DVYG---IDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSE--DFPSIFH 151
           D YG   +DEQ          Y   SY R D  + D          ++T +  +F    +
Sbjct: 97  DKYGEKGLDEQ-----NQGGGYQSWSYYRYDFGIYDDD------LEIITLDRGEFDGAVN 145

Query: 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL 198
             + W I  YS G   C   +  W+  A  ++G+   G V  GD R+
Sbjct: 146 SGELWFINFYSPGCSHCHDLAPTWRQFAKEMDGLLRIGAVNCGDNRM 192

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane.

Xenopus laevis (taxid: 8355)

>sp|Q5FVM7|DJC16_RAT DnaJ homolog subfamily C member 16 OS=Rattus norvegicus GN=Dnajc16 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 166/421 (39%), Gaps = 64/421 (15%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYD 97
           Y  LG+   +S   +K+AY+K + +W+    + P   D F++I  AYE+L++   + NYD
Sbjct: 31  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRTNYD 90

Query: 98  VYGIDEQLHILEKVRE----QYGEESY---SRIDLPL----LDATD-----HSVHAFNVV 141
            YG   +    ++ RE     + E  Y   S    P      D+ D     H  H  N V
Sbjct: 91  HYGDAGENQGYQQQREYRFRHFHENFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEV 150

Query: 142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLA 199
             + F       KP+LI++ SD  + C      WK +   LEG+    G+V  G + RLA
Sbjct: 151 VPDSF------KKPYLIKITSDWCFSCIHIEPIWKEVVQELEGLGVGIGVVHAGYERRLA 204

Query: 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRI 259
            HL               PS++    G  S      F     V      F  ++L    +
Sbjct: 205 HHLGA----------HSTPSILGIINGKIS------FFHNAVVHENLRQFVESLLPGNLV 248

Query: 260 FYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISR-NYWAYASFAFV---LWR 315
              T ++  +        +K   + F +T   A+P + +++   Y  Y SF +V   L  
Sbjct: 249 EKVTNKNYVRFLSGWQQENKPHALLFGQTP--AAPLLYKLTAFAYKDYVSFGYVYVGLRG 306

Query: 316 EEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSFNNSRLSEVMEQNKLQELPQLRS 373
            EE +  +N      AP ++  K+   KP   +         + + + QNK     +L S
Sbjct: 307 VEEMTRQYNV--NIYAPTMLIFKEHINKPADAIQARGLKKQVIEDFITQNKYLLASRLTS 364

Query: 374 VTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAAD 433
                  C  +   R        YCV+L   L+ E NK+ +      +  LS   +N  D
Sbjct: 365 QKLFHELCPVKRSHRQRK-----YCVVL---LTAEANKLSKPF----DAFLSFALANTQD 412

Query: 434 T 434
           T
Sbjct: 413 T 413

Rattus norvegicus (taxid: 10116)

>sp|Q80TN4|DJC16_MOUSE DnaJ homolog subfamily C member 16 OS=Mus musculus GN=Dnajc16 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 168/422 (39%), Gaps = 65/422 (15%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYD 97
           Y  LG+   +S   +K+AY+K + +W+    + P   D F++I  AYE+L++   + NYD
Sbjct: 31  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 90

Query: 98  VYG---------IDEQLHILEKVREQ-YGEESYSRI--DLPLLDATD-----HSVHAFNV 140
            YG           ++ H      E  Y +ES+     +    D+ D     H  H  N 
Sbjct: 91  HYGDAGENQGYQKQQREHRFRHFHENFYFDESFFHFPFNAERRDSGDEKYLLHFSHYVNE 150

Query: 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRL 198
           V  E F       +P+LI++ SD  + C      WK +   LEG+    G+V  G + RL
Sbjct: 151 VLPESF------KRPYLIKITSDWCFSCIHIEPVWKEVVQELEGLGVGIGVVHAGYERRL 204

Query: 199 ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR 258
           A HL               PS++    G      +T F   +  + +   F  ++L    
Sbjct: 205 AHHLGA----------HSTPSILGVISG-----KITFFHNAVVHENLRQ-FVESLLPGNL 248

Query: 259 IFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISR-NYWAYASFAFV---LW 314
           +   T ++  +        +K   + F +T   A P + +++   Y  Y SF +V   L 
Sbjct: 249 VEKVTNKNYVRFLSGWQQENKPHALLFGQTP--AVPLMYKLTAFAYKDYVSFGYVYVGLR 306

Query: 315 REEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSFNNSRLSEVMEQNKLQELPQLR 372
             EE +  +N       P ++  K+   KP  V+         + + + QNK     +L 
Sbjct: 307 GVEEMTRQYNV--NLYTPTMLIFKEHINKPADVIQARGLKKQVIEDFIAQNKYLLASRLT 364

Query: 373 SVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAA 432
           S       C  +   R        YCV+L   L+ E NK+ +      E  LS   +N  
Sbjct: 365 SQRLFHELCPVKRSHRQRK-----YCVVL---LTAETNKVSKPF----EAFLSFALANTQ 412

Query: 433 DT 434
           DT
Sbjct: 413 DT 414

Mus musculus (taxid: 10090)

>sp|Q5RCM7|DJC16_PONAB DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 195/495 (39%), Gaps = 99/495 (20%)

Query: 7   ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN 66
           + K+   W  LI+  L L    ++    F P  Y  LG+   +S   +K+AY+K + +W+
Sbjct: 3   VRKLSISWQFLIVLVLIL---QILSALDFDP--YKVLGVSRTASQADIKKAYKKLAREWH 57

Query: 67  -SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYDVYG------IDEQLHILEKVREQYGEE 118
               + P   D F++I  AYE+L++   + NYD YG        ++     + R ++  E
Sbjct: 58  PDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHE 117

Query: 119 SY----SRIDLPL----LDATD-----HSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGS 165
           ++    S    P      D+ D     H  H  N V  + F       KP+LI++ SD  
Sbjct: 118 NFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSF------KKPYLIKITSDWC 171

Query: 166 YLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLATHL-AERKP--IGQI-----FFRR 215
           + C      WK +   LE +    G+V  G + RLA HL A   P  +G I     FFR 
Sbjct: 172 FSCIHIEPVWKEVVQELEELGVGIGVVHAGYERRLAHHLGAHSTPSILGIINGKISFFRN 231

Query: 216 GL--PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLA 273
            +   +L  F       + + +  G+  V  ++ W                         
Sbjct: 232 AVVRENLRQFVESLLPGNLVEKVTGKNYVRFLSGW-----------------------QQ 268

Query: 274 KTGPHKVKVIFFSKTGERASPFVRQISR-NYWAYASFAFV---LWREEESSIWWNTFEVE 329
           +  PH   V+ F +T     P + +++   Y  Y SF +V   L   EE +  +N     
Sbjct: 269 ENKPH---VLLFDQTP--IVPLLYKLTAFAYKDYLSFGYVYVGLRGTEEMTRRYNI--NI 321

Query: 330 SAPAIVFLKDPGVKP--VVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYS 387
            AP ++  K+   KP  V+         + + + QNK     +L S       C  R   
Sbjct: 322 YAPTLLVFKEHINKPADVIQARGMKKQIIDDFITQNKHLLAARLTSQKLFHELCPVRRSH 381

Query: 388 RAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN 447
           R        YCV+L   L+ E  K+ +      E  LS   +N  DT + +      + N
Sbjct: 382 RQRK-----YCVVL---LTAETTKLSKPF----EAFLSFALANTQDTVRFVH----VYSN 425

Query: 448 KRLTFAWL---DGEA 459
           ++  FA     DGEA
Sbjct: 426 RQQEFAGTLLPDGEA 440

Pongo abelii (taxid: 9601)

>sp|Q5ZKZ4|DJC16_CHICK DnaJ homolog subfamily C member 16 OS=Gallus gallus GN=DNAJC16 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 26/184 (14%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYD 97
           Y  LG+   SS   +K+AY++ + +W+    + P   D F++I  AYE+L++   + N+D
Sbjct: 30  YRVLGVGRSSSQADIKKAYKRLARQWHPDKNKDPGAEDKFIQISKAYEILSNEEKRANFD 89

Query: 98  VYG--------IDEQLHILEKVREQ-YGEESYSRI--DLPLLDATD-----HSVHAFNVV 141
            YG           Q        E  Y +ES+     +    D +D     H  H  N +
Sbjct: 90  RYGDAGESQGYSQHQQRQFHHFHEGFYFDESFFHFPFNSERRDTSDEKYLLHFSHYINEI 149

Query: 142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLA 199
             + F       KP+LI++ SD  + C      WK +A  LE +    G+V  G + RLA
Sbjct: 150 VPDSF------KKPYLIKITSDWCFSCIHIEPVWKEVAQELEALGVGIGVVHAGYERRLA 203

Query: 200 THLA 203
            HL 
Sbjct: 204 HHLG 207

Gallus gallus (taxid: 9031)

>sp|Q9Y2G8|DJC16_HUMAN DnaJ homolog subfamily C member 16 OS=Homo sapiens GN=DNAJC16 PE=2 SV=3

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 34/220 (15%)

Query: 7   ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN 66
           + K+   W  LI+  L L    ++    F P  Y  LG+   +S   +K+AY+K + +W+
Sbjct: 3   VRKLSISWQFLIVLVLIL---QILSALDFDP--YRVLGVSRTASQADIKKAYKKLAREWH 57

Query: 67  -SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYDVYG------IDEQLHILEKVREQYGEE 118
               + P   D F++I  AYE+L++   + NYD YG        ++     + R ++  E
Sbjct: 58  PDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHE 117

Query: 119 SY----SRIDLPL----LDATD-----HSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGS 165
           ++    S    P      D+ D     H  H  N V  + F       KP+LI++ SD  
Sbjct: 118 NFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSF------KKPYLIKITSDWC 171

Query: 166 YLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLATHLA 203
           + C      WK +   LE +    G+V  G + RLA HL 
Sbjct: 172 FSCIHIEPVWKEVIQELEELGVGIGVVHAGYERRLAHHLG 211

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
224127416	695	predicted protein [Populus trichocarpa]	0.980	0.928	0.668	0.0
255547351	682	heat shock protein binding protein, puta	0.955	0.922	0.669	0.0
359491697	685	PREDICTED: uncharacterized protein LOC10	0.972	0.934	0.662	0.0
297733956	698	unnamed protein product [Vitis vinifera]	0.966	0.911	0.663	0.0
449440808	704	PREDICTED: uncharacterized protein LOC10	0.965	0.901	0.604	0.0
79318136	705	DNAJ heat shock N-terminal domain-contai	0.968	0.903	0.570	0.0
22329659	700	DNAJ heat shock N-terminal domain-contai	0.968	0.91	0.570	0.0
297844826	703	DNAJ heat shock N-terminal domain-contai	0.954	0.893	0.575	0.0
334182674	715	DNAJ heat shock N-terminal domain-contai	0.968	0.890	0.557	0.0
238478537	695	DNAJ heat shock N-terminal domain-contai	0.960	0.909	0.556	0.0

>gi|224127416|ref|XP_002329272.1| predicted protein [Populus trichocarpa] gi|222870726|gb|EEF07857.1| predicted protein [Populus trichocarpa]

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/649 (66%), Positives = 525/649 (80%), Gaps = 4/649 (0%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKF 61
           A  +M SK+KAY  PL LF L +FYQLVVLPRSFP SHYD LGIK YSSVE+VKEAY+K 
Sbjct: 1   AMSSMASKIKAYSVPLFLFSLSVFYQLVVLPRSFPASHYDVLGIKRYSSVEEVKEAYDKL 60

Query: 62  SSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYS 121
           SSKWNS   IP+T+DF+KIQYAYELLT+PLWKR+YD++GIDEQ HI++K+  Q+  ES S
Sbjct: 61  SSKWNSEAGIPATSDFIKIQYAYELLTNPLWKRDYDIFGIDEQAHIMDKINLQHAGESIS 120

Query: 122 RIDLPLLDAT--DHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA 179
            IDLPLL+AT  D   H FN  TS++F  +F  SKPWL+ VYS GS  C QF  +W  I 
Sbjct: 121 GIDLPLLEATTFDLGFHTFNEFTSQEFAPMFDSSKPWLVLVYSLGSKKCAQFFSSWIDIT 180

Query: 180 ALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE 239
            LL+G+A  G++ELG+++LA  LAERKP G+ FFR GLPSLVAFP GCK+S C+ RFEG+
Sbjct: 181 GLLDGVAGVGILELGELQLAISLAERKPTGKFFFRNGLPSLVAFPSGCKASACLVRFEGD 240

Query: 240 LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQI 299
           LS DAV DWFAT +L LPRI YY+KES+G+NFLAK+GPHKVKVIFFSKTG RA+PFVRQ 
Sbjct: 241 LSTDAVIDWFATKVLGLPRILYYSKESLGQNFLAKSGPHKVKVIFFSKTGARATPFVRQT 300

Query: 300 SRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359
           +++YWAY SFAFVLWREE+ S+WWN FEVESAPAIVF+KD GVKPVV +G  NNS   ++
Sbjct: 301 AKSYWAYTSFAFVLWREEDFSVWWNAFEVESAPAIVFVKDSGVKPVVVHGMVNNSEFLDL 360

Query: 360 MEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRV 419
           +E+NK QELPQLRS TSMELGCDARG+SRAG+DT  WYCVILAGRL PELNK+RE +RR+
Sbjct: 361 VEKNKQQELPQLRSATSMELGCDARGHSRAGNDTISWYCVILAGRLGPELNKLREIMRRI 420

Query: 420 QETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGA 479
           QE L  D ES+ AD +Q LA    AF+ KRLTF WLDGEAQ++YCS+YL SETS++TCG 
Sbjct: 421 QERLSIDSESSEADKEQPLALTG-AFKGKRLTFTWLDGEAQEKYCSYYLHSETSYDTCGP 479

Query: 480 RRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQ 539
           RRD+ DVP+LFIVRYKRN +ED+ K+  KP+ I++  ++++VDPASQLV RYNGSDEI Q
Sbjct: 480 RRDLIDVPKLFIVRYKRNASEDDIKVNTKPKKIFNVFEDEDVDPASQLVARYNGSDEISQ 539

Query: 540 IAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQ 599
           I  W+SEII+DGD+++LPFYR+KTP LVPEDSEP+ +R AQS+FSKSIG+KQRI N + +
Sbjct: 540 IMLWMSEIIRDGDTRNLPFYRSKTPALVPEDSEPIWSRGAQSIFSKSIGIKQRIYNNISR 599

Query: 600 CYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRAHPSQSGQPGPSANEV 648
            YDYLGDPRIGP LLL ALMSFGTIWL+R Q   HP+Q+ Q   S  +V
Sbjct: 600 IYDYLGDPRIGPILLLGALMSFGTIWLIRSQS-THPTQASQLSQSNAKV 647

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547351|ref|XP_002514733.1| heat shock protein binding protein, putative [Ricinus communis] gi|223546337|gb|EEF47839.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/638 (66%), Positives = 525/638 (82%), Gaps = 9/638 (1%)

Query: 5   TMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSK 64
           T+ S VKAY  P  LF L +FYQLVVLPRSFP SHYD L IK YSS+E+V+ AYEK SSK
Sbjct: 3   TIPSAVKAYAVPFFLFALSIFYQLVVLPRSFPLSHYDVLRIKRYSSIEEVENAYEKLSSK 62

Query: 65  WNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRID 124
           WN+G+++P+  DFL+IQYAYELL +PLWKR+YD++ IDEQLH+L+K +E Y  ES+S+I 
Sbjct: 63  WNAGDKVPTAVDFLEIQYAYELLKNPLWKRDYDLFNIDEQLHMLDKFKELYAGESFSQIG 122

Query: 125 LPLLDAT--DHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL 182
           LPLLDA   D   H  N +T+EDF SIF DSKPWLIQVYS GS    QFS +WK IA  L
Sbjct: 123 LPLLDAKSFDPPDHTLNSITTEDFWSIFSDSKPWLIQVYSLGSSRSAQFSNSWKKIAYSL 182

Query: 183 EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSV 242
           +G+ANTG VELG+++LA  LAE+KP G IFFR GLPSLVAFPPGCK  +C+ R+EG+LSV
Sbjct: 183 DGVANTGAVELGEVQLAISLAEKKPTGGIFFRNGLPSLVAFPPGCKILECLMRYEGDLSV 242

Query: 243 DAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRN 302
           DAVT+WFATA+L LPRI Y++K+S+GK+FLAK+GPHKVKVIFFSKTG RA+PF+ QI+++
Sbjct: 243 DAVTNWFATAVLSLPRILYHSKDSLGKHFLAKSGPHKVKVIFFSKTGVRATPFLCQIAKD 302

Query: 303 YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362
           YW YASFA VLWREE+ S+WWNTFEVESAPAIVFLKDPGVKPVV++GSFNNS  S+VME+
Sbjct: 303 YWDYASFALVLWREEDFSLWWNTFEVESAPAIVFLKDPGVKPVVFHGSFNNSWFSDVMEK 362

Query: 363 NKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQET 422
           NKLQELPQLRSVTSMELGCDARG+SRAG+DT  WYCVI+AGRL PELNKMRET+RRV+E 
Sbjct: 363 NKLQELPQLRSVTSMELGCDARGHSRAGNDTVSWYCVIVAGRLGPELNKMRETMRRVEEL 422

Query: 423 LLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRD 482
           LL+D E +  D DQS +  A A +NKRLTFAWLDGEAQ +YC FYL SETS++TCG RRD
Sbjct: 423 LLNDGEPSVVDKDQSSSLLATALKNKRLTFAWLDGEAQQKYCLFYLHSETSYDTCGPRRD 482

Query: 483 MSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAK 542
           M DVPRLFIVRYKRN T+D  ++++      + ++ ++ D ASQLV RYNGSDEIPQI +
Sbjct: 483 MVDVPRLFIVRYKRNATQDNVRVKK------NILEYEDADSASQLVARYNGSDEIPQIIR 536

Query: 543 WVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYD 602
           W+SE ++DG+++DLPF++AKTP+LVPEDS+P+ +R AQ++ S S+G+K RIR I+ +  D
Sbjct: 537 WISETMRDGETRDLPFFKAKTPDLVPEDSDPIWSRGAQNILSGSVGIKHRIRGIISRICD 596

Query: 603 YLGDPRIGPALLLAALMSFGTIWLMRGQQRAHPSQSGQ 640
           Y+GDPRIGP LL+ +LMSFGT+WLMR Q   H S+S Q
Sbjct: 597 YIGDPRIGPILLVGSLMSFGTVWLMRNQA-THQSRSSQ 633

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491697|ref|XP_002281830.2| PREDICTED: uncharacterized protein LOC100244920 [Vitis vinifera]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/643 (66%), Positives = 517/643 (80%), Gaps = 3/643 (0%)

Query: 6   MISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKW 65
           M S +KAY  PL+L    +F QL V+P SFP +HYD LGIK YS+VE+V EAYEKFSSKW
Sbjct: 1   MASTLKAYSIPLVLLAAAIFLQLFVIPNSFPLNHYDVLGIKRYSTVEEVAEAYEKFSSKW 60

Query: 66  NSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDL 125
           NSG E+P T DFLKI+YA+ELLTDPLWKR+YD++GIDEQ+ + E V++Q+   S+S I+L
Sbjct: 61  NSGTEVPETIDFLKIRYAFELLTDPLWKRDYDIFGIDEQIDVFENVKKQFSGVSFSGINL 120

Query: 126 PLLDA--TDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE 183
           PLL A  +D   H FNV+TS DF S+   ++P LIQ+YS GS  C QFS  WK IA  LE
Sbjct: 121 PLLSAASSDPGDHVFNVITSNDFHSVLEKTEPLLIQIYSLGSNSCRQFSNDWKRIATFLE 180

Query: 184 GIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVD 243
           G+ANTGMVELGD RLA +LAE+KP GQ FFR GLPSLVAFP GC++SDC+ R+EGELSVD
Sbjct: 181 GVANTGMVELGDARLAAYLAEKKPTGQPFFRNGLPSLVAFPSGCRTSDCLVRYEGELSVD 240

Query: 244 AVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNY 303
           AVTDWFATAIL LPRI YY+KES+G+ FLAK+ P KVKVI FS+TG+RA+PF+RQ ++NY
Sbjct: 241 AVTDWFATAILTLPRISYYSKESLGQAFLAKSSPWKVKVIVFSRTGQRATPFLRQAAKNY 300

Query: 304 WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363
           WA+ASFAFVLW+EE+SS+WWNTFEVESAPAIVFLKDPGVKPVV++G FNNS    +MEQN
Sbjct: 301 WAHASFAFVLWQEEDSSVWWNTFEVESAPAIVFLKDPGVKPVVHHGFFNNSWFVNIMEQN 360

Query: 364 KLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETL 423
           K QELPQLRS+TSMELGCDARGYSRAG DT  WYCVILAGRLS ELNKMRET+RRVQ+ L
Sbjct: 361 KQQELPQLRSITSMELGCDARGYSRAGYDTMTWYCVILAGRLSLELNKMRETMRRVQQIL 420

Query: 424 LSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDM 483
            S  E N AD  Q   P+A+A ++KRLTF WLDGEAQ +YC FY+ SE S++TCG RRD+
Sbjct: 421 SSAAELNGADKQQPSEPSAIALKDKRLTFTWLDGEAQKQYCFFYIHSEDSYDTCGPRRDV 480

Query: 484 SDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKW 543
           +DVP+LFIVRYKRN T D+ K+ER+P+ IW+  QE++VDPASQLV RYNGS EIP+I KW
Sbjct: 481 ADVPQLFIVRYKRNATVDDLKVERRPKGIWNPFQEEDVDPASQLVARYNGSGEIPEIIKW 540

Query: 544 VSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDY 603
           +S+II+DGDS+DLP +R KTP+LVPED +P+ ++ AQS+ S S G+K RI++I+    D 
Sbjct: 541 ISQIIKDGDSRDLPLFRTKTPQLVPEDGDPIWSKGAQSILSTSKGLKYRIKSIISGMNDR 600

Query: 604 LGDPRIGPALLLAALMSFGTIWLMRGQQRAHPSQSGQPGPSAN 646
           LGDPRIGP LLL +LMSF +IWL R Q   H S+  QP   +N
Sbjct: 601 LGDPRIGPMLLLGSLMSFASIWLKRSQA-THQSRLDQPSQPSN 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733956|emb|CBI15203.3| unnamed protein product [Vitis vinifera]

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/639 (66%), Positives = 515/639 (80%), Gaps = 3/639 (0%)

Query: 10  VKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGE 69
           +KAY  PL+L    +F QL V+P SFP +HYD LGIK YS+VE+V EAYEKFSSKWNSG 
Sbjct: 18  LKAYSIPLVLLAAAIFLQLFVIPNSFPLNHYDVLGIKRYSTVEEVAEAYEKFSSKWNSGT 77

Query: 70  EIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLD 129
           E+P T DFLKI+YA+ELLTDPLWKR+YD++GIDEQ+ + E V++Q+   S+S I+LPLL 
Sbjct: 78  EVPETIDFLKIRYAFELLTDPLWKRDYDIFGIDEQIDVFENVKKQFSGVSFSGINLPLLS 137

Query: 130 A--TDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIAN 187
           A  +D   H FNV+TS DF S+   ++P LIQ+YS GS  C QFS  WK IA  LEG+AN
Sbjct: 138 AASSDPGDHVFNVITSNDFHSVLEKTEPLLIQIYSLGSNSCRQFSNDWKRIATFLEGVAN 197

Query: 188 TGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247
           TGMVELGD RLA +LAE+KP GQ FFR GLPSLVAFP GC++SDC+ R+EGELSVDAVTD
Sbjct: 198 TGMVELGDARLAAYLAEKKPTGQPFFRNGLPSLVAFPSGCRTSDCLVRYEGELSVDAVTD 257

Query: 248 WFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYA 307
           WFATAIL LPRI YY+KES+G+ FLAK+ P KVKVI FS+TG+RA+PF+RQ ++NYWA+A
Sbjct: 258 WFATAILTLPRISYYSKESLGQAFLAKSSPWKVKVIVFSRTGQRATPFLRQAAKNYWAHA 317

Query: 308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQE 367
           SFAFVLW+EE+SS+WWNTFEVESAPAIVFLKDPGVKPVV++G FNNS    +MEQNK QE
Sbjct: 318 SFAFVLWQEEDSSVWWNTFEVESAPAIVFLKDPGVKPVVHHGFFNNSWFVNIMEQNKQQE 377

Query: 368 LPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDD 427
           LPQLRS+TSMELGCDARGYSRAG DT  WYCVILAGRLS ELNKMRET+RRVQ+ L S  
Sbjct: 378 LPQLRSITSMELGCDARGYSRAGYDTMTWYCVILAGRLSLELNKMRETMRRVQQILSSAA 437

Query: 428 ESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVP 487
           E N AD  Q   P+A+A ++KRLTF WLDGEAQ +YC FY+ SE S++TCG RRD++DVP
Sbjct: 438 ELNGADKQQPSEPSAIALKDKRLTFTWLDGEAQKQYCFFYIHSEDSYDTCGPRRDVADVP 497

Query: 488 RLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEI 547
           +LFIVRYKRN T D+ K+ER+P+ IW+  QE++VDPASQLV RYNGS EIP+I KW+S+I
Sbjct: 498 QLFIVRYKRNATVDDLKVERRPKGIWNPFQEEDVDPASQLVARYNGSGEIPEIIKWISQI 557

Query: 548 IQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYDYLGDP 607
           I+DGDS+DLP +R KTP+LVPED +P+ ++ AQS+ S S G+K RI++I+    D LGDP
Sbjct: 558 IKDGDSRDLPLFRTKTPQLVPEDGDPIWSKGAQSILSTSKGLKYRIKSIISGMNDRLGDP 617

Query: 608 RIGPALLLAALMSFGTIWLMRGQQRAHPSQSGQPGPSAN 646
           RIGP LLL +LMSF +IWL R Q   H S+  QP   +N
Sbjct: 618 RIGPMLLLGSLMSFASIWLKRSQA-THQSRLDQPSQPSN 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440808|ref|XP_004138176.1| PREDICTED: uncharacterized protein LOC101203381 [Cucumis sativus] gi|449477213|ref|XP_004154962.1| PREDICTED: uncharacterized protein LOC101225277 [Cucumis sativus]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/652 (60%), Positives = 483/652 (74%), Gaps = 17/652 (2%)

Query: 1   MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEK 60
           M   +M S +KAY  PLILF L +FY LVV+P SFP SHYD LGIK YSSV++VKEAYEK
Sbjct: 11  MPTSSMASTIKAYSVPLILFSLAVFYHLVVIPASFPTSHYDVLGIKRYSSVDEVKEAYEK 70

Query: 61  FSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESY 120
            S+KW SG EI    DF+KIQYAYELL + LWKR+YD++G DEQ  +LEK + QY  +  
Sbjct: 71  LSNKWESGGEISEAVDFVKIQYAYELLKNNLWKRDYDLFGFDEQRGVLEKAKVQYAGKKI 130

Query: 121 SRIDLPLLD--ATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTI 178
           S I LPLLD  A +    + N + S D  S+F+D KP LI +YS GS LC +FS  WK I
Sbjct: 131 SEISLPLLDEVALNTEDRSLNFIRSNDVQSMFNDDKPSLIMLYSFGSKLCVRFSDVWKQI 190

Query: 179 AALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG 238
            ALL+G+ANT +VELG+ +LA +LAE+KP GQ FFR GLPS VAF PGCKS+DC+ RF G
Sbjct: 191 VALLDGVANTAVVELGEAQLAAYLAEKKPTGQPFFRNGLPSFVAFSPGCKSTDCINRFNG 250

Query: 239 ELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQ 298
           +LS D +TDWFAT+IL LPRI YY+KE++G  FLAK+ PHKVKVI FS+TGERA+PF+RQ
Sbjct: 251 KLSFDDITDWFATSILYLPRILYYSKETLGPKFLAKSSPHKVKVIIFSETGERAAPFIRQ 310

Query: 299 ISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358
            ++N W   SFA VLWREEESSIW + F VE APA+VFLKDPG+KP+VY+GS N S   +
Sbjct: 311 TAKNNWDSVSFALVLWREEESSIWLDAFGVELAPAMVFLKDPGMKPIVYHGSVNRSSFVQ 370

Query: 359 VMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRR 418
           ++EQNK  ELPQLRS TSMELGCD  GYSRAGSDT  WYC I+AGRL  ELNKMRET+RR
Sbjct: 371 LIEQNKQHELPQLRSRTSMELGCDPHGYSRAGSDTLTWYCAIVAGRLGAELNKMRETMRR 430

Query: 419 VQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCG 478
           V+ETL SD E+  AD D  + PA VA +++RL+F WLDGEAQ +YC FY+ SE+S+ETCG
Sbjct: 431 VKETLTSDSEAYGADEDPKIFPAVVALQSQRLSFTWLDGEAQKKYCFFYISSESSYETCG 490

Query: 479 ARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIP 538
             RD+SDVPRLFIVRYKR+ T+ +   E KP++++D   + + D A+QLV  YNGS EI 
Sbjct: 491 PMRDLSDVPRLFIVRYKRDATKAK---EMKPKSMFDTSSD-DPDLAAQLVALYNGSSEIS 546

Query: 539 QIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMG 598
           +IA+WVS+II+DGDSKDLPFYR K+PELV ED EP+   SA S F  ++   +RI +I  
Sbjct: 547 EIAQWVSKIIEDGDSKDLPFYRVKSPELVHEDPEPMSFGSAGSSFITNV--LKRIEHIKV 604

Query: 599 QCYDYLGDPRIGPALLLAALMSFGTIWLMRGQ---------QRAHPSQSGQP 641
             YD L DPRIGP L LA+L+SFGTIWL + Q         Q   PS+S QP
Sbjct: 605 GIYDRLEDPRIGPVLFLASLLSFGTIWLRKSQPTPPSRPAAQPEPPSESAQP 656

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79318136|ref|NP_001031065.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|332191627|gb|AEE29748.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/649 (57%), Positives = 486/649 (74%), Gaps = 12/649 (1%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKF 61
           A  +M S +KAY  P+ LF L +F+QL +LPRSFPPSHYD LG+K YSSV+ VK+AY+  
Sbjct: 7   ASSSMPSGLKAYTVPIFLFVLAMFFQLFLLPRSFPPSHYDVLGVKMYSSVDDVKDAYQTV 66

Query: 62  SSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYS 121
           +SKW+SG  +   ADF+KIQYAYELLT+ +WKR+YD+Y IDE +HI+E++ +QY  E ++
Sbjct: 67  ASKWDSGSGVSLPADFVKIQYAYELLTNLVWKRDYDLYAIDESVHIIEELEKQYAVEDFA 126

Query: 122 RIDLPLLDATDHSVH--AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA 179
           +I LPLL+   +      F  +TS+DF S F DSKPWLIQVYS GS    QF+  W+ I 
Sbjct: 127 KIKLPLLEVVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSGSNSSAQFATVWRRIV 186

Query: 180 ALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE 239
           ALL+G+AN  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FPP CK++DC+ RFEGE
Sbjct: 187 ALLDGVANHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFPPNCKTADCLIRFEGE 246

Query: 240 LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQI 299
           LS DA+TDWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI FS+TGERA+P VRQ 
Sbjct: 247 LSADAITDWFATTVLGLPRVFYHTKETLVSKFLSKVPPNKVKVILFSQTGERATPIVRQA 306

Query: 300 SRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359
           +++YW +AS + VLWREE++S WWN  EVESAPAIV +KDPG KPVVY+GS N +   ++
Sbjct: 307 AKDYWNFASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKPVVYHGSGNRTWFLDI 366

Query: 360 MEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRV 419
           +EQNK   LPQLRS TSMELGCDARGYSRAG D   WYC IL GR S ELNKMRET+ RV
Sbjct: 367 LEQNKQLLLPQLRSTTSMELGCDARGYSRAGYDKVTWYCAILVGRQSVELNKMRETMCRV 426

Query: 420 QETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGA 479
           Q+ L   D+S+ A  D S+ PAA A ++KRL+FAWLDGEAQ++YC FY+ SETS++TCG 
Sbjct: 427 QDALSKYDDSDDASKDPSITPAASAHKSKRLSFAWLDGEAQNKYCFFYVQSETSYDTCGT 486

Query: 480 RRDMSDVPRLFIVRYKRNTTED---EAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDE 536
           RR   DVPR+ IVRY RN TE    E K  + P+ +W + +  +VDPA+QLVV Y+G+ E
Sbjct: 487 RRAPIDVPRILIVRYHRNATETANAEQKSSKWPKTVWQS-EADDVDPAAQLVVSYDGTAE 545

Query: 537 IPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNI 596
           IPQI KW+S+++ DGD+++LPFYRAKTPELVPE +EP+     +S   K++   Q++ ++
Sbjct: 546 IPQIIKWLSKMVDDGDNRNLPFYRAKTPELVPESAEPM-----RSGVPKTVKATQKLLSL 600

Query: 597 MGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRA-HPSQSGQPGPS 644
             +  DYL DPR+GP LLL AL+S G +W MR +     P+Q+ QP P+
Sbjct: 601 WNRIKDYLADPRMGPTLLLGALLSAGNVWWMRSRSSTQQPAQTNQPSPN 649

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329659|ref|NP_173305.2| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|17979007|gb|AAL47463.1| At1g18700/F6A14_19 [Arabidopsis thaliana] gi|23506111|gb|AAN28915.1| At1g18700/F6A14_19 [Arabidopsis thaliana] gi|332191626|gb|AEE29747.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/649 (57%), Positives = 486/649 (74%), Gaps = 12/649 (1%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKF 61
           A  +M S +KAY  P+ LF L +F+QL +LPRSFPPSHYD LG+K YSSV+ VK+AY+  
Sbjct: 7   ASSSMPSGLKAYTVPIFLFVLAMFFQLFLLPRSFPPSHYDVLGVKMYSSVDDVKDAYQTV 66

Query: 62  SSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYS 121
           +SKW+SG  +   ADF+KIQYAYELLT+ +WKR+YD+Y IDE +HI+E++ +QY  E ++
Sbjct: 67  ASKWDSGSGVSLPADFVKIQYAYELLTNLVWKRDYDLYAIDESVHIIEELEKQYAVEDFA 126

Query: 122 RIDLPLLDATDHSVH--AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA 179
           +I LPLL+   +      F  +TS+DF S F DSKPWLIQVYS GS    QF+  W+ I 
Sbjct: 127 KIKLPLLEVVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSGSNSSAQFATVWRRIV 186

Query: 180 ALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE 239
           ALL+G+AN  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FPP CK++DC+ RFEGE
Sbjct: 187 ALLDGVANHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFPPNCKTADCLIRFEGE 246

Query: 240 LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQI 299
           LS DA+TDWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI FS+TGERA+P VRQ 
Sbjct: 247 LSADAITDWFATTVLGLPRVFYHTKETLVSKFLSKVPPNKVKVILFSQTGERATPIVRQA 306

Query: 300 SRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359
           +++YW +AS + VLWREE++S WWN  EVESAPAIV +KDPG KPVVY+GS N +   ++
Sbjct: 307 AKDYWNFASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKPVVYHGSGNRTWFLDI 366

Query: 360 MEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRV 419
           +EQNK   LPQLRS TSMELGCDARGYSRAG D   WYC IL GR S ELNKMRET+ RV
Sbjct: 367 LEQNKQLLLPQLRSTTSMELGCDARGYSRAGYDKVTWYCAILVGRQSVELNKMRETMCRV 426

Query: 420 QETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGA 479
           Q+ L   D+S+ A  D S+ PAA A ++KRL+FAWLDGEAQ++YC FY+ SETS++TCG 
Sbjct: 427 QDALSKYDDSDDASKDPSITPAASAHKSKRLSFAWLDGEAQNKYCFFYVQSETSYDTCGT 486

Query: 480 RRDMSDVPRLFIVRYKRNTTED---EAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDE 536
           RR   DVPR+ IVRY RN TE    E K  + P+ +W + +  +VDPA+QLVV Y+G+ E
Sbjct: 487 RRAPIDVPRILIVRYHRNATETANAEQKSSKWPKTVWQS-EADDVDPAAQLVVSYDGTAE 545

Query: 537 IPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNI 596
           IPQI KW+S+++ DGD+++LPFYRAKTPELVPE +EP+     +S   K++   Q++ ++
Sbjct: 546 IPQIIKWLSKMVDDGDNRNLPFYRAKTPELVPESAEPM-----RSGVPKTVKATQKLLSL 600

Query: 597 MGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRA-HPSQSGQPGPS 644
             +  DYL DPR+GP LLL AL+S G +W MR +     P+Q+ QP P+
Sbjct: 601 WNRIKDYLADPRMGPTLLLGALLSAGNVWWMRSRSSTQQPAQTNQPSPN 649

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844826|ref|XP_002890294.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336136|gb|EFH66553.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/643 (57%), Positives = 483/643 (75%), Gaps = 15/643 (2%)

Query: 10  VKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGE 69
           +KAY  P+ LF L +F+QL +LPRSFPPSHYD LG+K YSSV+ VK+AYE  +SKW+SG 
Sbjct: 17  LKAYAVPIFLFVLAMFFQLFLLPRSFPPSHYDVLGVKMYSSVDDVKDAYETIASKWDSGS 76

Query: 70  EIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLD 129
                ADF+KIQYAYELLT+ +WKR+YD++GIDE +HI+E++ +QY  E +++I LPLL+
Sbjct: 77  GDSLPADFIKIQYAYELLTNLVWKRDYDLFGIDESVHIIEELEKQYAVEDFAKIKLPLLE 136

Query: 130 ATDHSVH--AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA-ALLEGIA 186
              +      F  +TS+DF S F DSKPWLIQVYS GS     F+ AW+ IA ALL+G+A
Sbjct: 137 VVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSGSKSSAHFTTAWRRIAVALLDGVA 196

Query: 187 NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246
           N  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FPP CK++DC+ RFEGELS DA+T
Sbjct: 197 NHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFPPNCKTADCLIRFEGELSADAIT 256

Query: 247 DWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAY 306
           DWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI FS+TGERA+P VRQ +++YW +
Sbjct: 257 DWFATTVLGLPRVFYHTKETLVPKFLSKVPPNKVKVILFSQTGERATPIVRQAAKDYWNF 316

Query: 307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ 366
           AS + VLWREE++S WWN  EVESAPAIV +KDPG KPVVY+GS N +   +++EQNK  
Sbjct: 317 ASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKPVVYHGSGNRTWFLDILEQNKQL 376

Query: 367 ELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSD 426
           +LPQLRS TSMELGCDARGYSRAG D   WYC IL GR S ELNKMRET+ RVQ+ L   
Sbjct: 377 QLPQLRSTTSMELGCDARGYSRAGYDKATWYCAILVGRQSVELNKMRETMCRVQDALSKY 436

Query: 427 DESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDV 486
           DES+ A  D  + PAA A + KRL+FAWLDGEAQ++YC FY+ SETS++TCG RR   DV
Sbjct: 437 DESDEASKDPLITPAASAHKTKRLSFAWLDGEAQNKYCFFYVQSETSYDTCGTRRAPIDV 496

Query: 487 PRLFIVRYKRNTTEDEAKIERK----PRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAK 542
           PR+ IVRY RN TE  A +E+K    P+ +W + +  +VDPA+QLVV Y+G  E P+I K
Sbjct: 497 PRILIVRYHRNATE-TANVEQKSSKWPKTVWQS-EADDVDPAAQLVVSYDGPAETPEIIK 554

Query: 543 WVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNIMGQCYD 602
           W+S+++ DGD+++LPFYRAKTPELVPE++EP+     +S   KSI   Q++ ++  +  D
Sbjct: 555 WLSKMVDDGDNRNLPFYRAKTPELVPENAEPM-----RSGIPKSIKATQKLLSLWNRIKD 609

Query: 603 YLGDPRIGPALLLAALMSFGTIWLMRGQQRA-HPSQSGQPGPS 644
           YL DPR+GP LLL AL+S G +W MR +     P+Q+ QP P+
Sbjct: 610 YLADPRMGPTLLLGALLSAGNVWWMRSRTSTPQPAQTNQPSPN 652

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182674|ref|NP_001185029.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|332191629|gb|AEE29750.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/664 (55%), Positives = 486/664 (73%), Gaps = 27/664 (4%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDA---------------LGIK 46
           A  +M S +KAY  P+ LF L +F+QL +LPRSFPPSHYD                LG+K
Sbjct: 7   ASSSMPSGLKAYTVPIFLFVLAMFFQLFLLPRSFPPSHYDGTQFSKLAFSLDYFLVLGVK 66

Query: 47  PYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLH 106
            YSSV+ VK+AY+  +SKW+SG  +   ADF+KIQYAYELLT+ +WKR+YD+Y IDE +H
Sbjct: 67  MYSSVDDVKDAYQTVASKWDSGSGVSLPADFVKIQYAYELLTNLVWKRDYDLYAIDESVH 126

Query: 107 ILEKVREQYGEESYSRIDLPLLDATDHSVH--AFNVVTSEDFPSIFHDSKPWLIQVYSDG 164
           I+E++ +QY  E +++I LPLL+   +      F  +TS+DF S F DSKPWLIQVYS G
Sbjct: 127 IIEELEKQYAVEDFAKIKLPLLEVVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSG 186

Query: 165 SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224
           S    QF+  W+ I ALL+G+AN  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FP
Sbjct: 187 SNSSAQFATVWRRIVALLDGVANHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFP 246

Query: 225 PGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIF 284
           P CK++DC+ RFEGELS DA+TDWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI 
Sbjct: 247 PNCKTADCLIRFEGELSADAITDWFATTVLGLPRVFYHTKETLVSKFLSKVPPNKVKVIL 306

Query: 285 FSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP 344
           FS+TGERA+P VRQ +++YW +AS + VLWREE++S WWN  EVESAPAIV +KDPG KP
Sbjct: 307 FSQTGERATPIVRQAAKDYWNFASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKP 366

Query: 345 VVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR 404
           VVY+GS N +   +++EQNK   LPQLRS TSMELGCDARGYSRAG D   WYC IL GR
Sbjct: 367 VVYHGSGNRTWFLDILEQNKQLLLPQLRSTTSMELGCDARGYSRAGYDKVTWYCAILVGR 426

Query: 405 LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYC 464
            S ELNKMRET+ RVQ+ L   D+S+ A  D S+ PAA A ++KRL+FAWLDGEAQ++YC
Sbjct: 427 QSVELNKMRETMCRVQDALSKYDDSDDASKDPSITPAASAHKSKRLSFAWLDGEAQNKYC 486

Query: 465 SFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTED---EAKIERKPRNIWDAMQEQEV 521
            FY+ SETS++TCG RR   DVPR+ IVRY RN TE    E K  + P+ +W + +  +V
Sbjct: 487 FFYVQSETSYDTCGTRRAPIDVPRILIVRYHRNATETANAEQKSSKWPKTVWQS-EADDV 545

Query: 522 DPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQS 581
           DPA+QLVV Y+G+ EIPQI KW+S+++ DGD+++LPFYRAKTPELVPE +EP+     +S
Sbjct: 546 DPAAQLVVSYDGTAEIPQIIKWLSKMVDDGDNRNLPFYRAKTPELVPESAEPM-----RS 600

Query: 582 LFSKSIGMKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRA-HPSQSGQ 640
              K++   Q++ ++  +  DYL DPR+GP LLL AL+S G +W MR +     P+Q+ Q
Sbjct: 601 GVPKTVKATQKLLSLWNRIKDYLADPRMGPTLLLGALLSAGNVWWMRSRSSTQQPAQTNQ 660

Query: 641 PGPS 644
           P P+
Sbjct: 661 PSPN 664

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478537|ref|NP_001154350.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|332191628|gb|AEE29749.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/649 (55%), Positives = 475/649 (73%), Gaps = 17/649 (2%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKF 61
           A  +M S +KAY  P+ LF L +F+QL +LPRSFPPSHYD LG+K YSSV+ VK+AY+  
Sbjct: 7   ASSSMPSGLKAYTVPIFLFVLAMFFQLFLLPRSFPPSHYDVLGVKMYSSVDDVKDAYQTV 66

Query: 62  SSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYS 121
           +SKW+SG  +   ADF+KIQYAYELLT+ +WKR+YD+Y IDE +HI+E++ +QY  E ++
Sbjct: 67  ASKWDSGSGVSLPADFVKIQYAYELLTNLVWKRDYDLYAIDESVHIIEELEKQYAVEDFA 126

Query: 122 RIDLPLLDATDHSVH--AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA 179
           +I LPLL+   +      F  +TS+DF S F DSKPWLIQVYS GS    QF+  W+ I 
Sbjct: 127 KIKLPLLEVVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSGSNSSAQFATVWRRIV 186

Query: 180 ALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE 239
           ALL+G+AN  M+ELGD++L T+LAE+KP GQ+FFR+   ++V     C  +D    FEGE
Sbjct: 187 ALLDGVANHAMLELGDVQLVTYLAEKKPTGQVFFRK---AMVYISERC--NDYTLGFEGE 241

Query: 240 LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQI 299
           LS DA+TDWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI FS+TGERA+P VRQ 
Sbjct: 242 LSADAITDWFATTVLGLPRVFYHTKETLVSKFLSKVPPNKVKVILFSQTGERATPIVRQA 301

Query: 300 SRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359
           +++YW +AS + VLWREE++S WWN  EVESAPAIV +KDPG KPVVY+GS N +   ++
Sbjct: 302 AKDYWNFASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKPVVYHGSGNRTWFLDI 361

Query: 360 MEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRV 419
           +EQNK   LPQLRS TSMELGCDARGYSRAG D   WYC IL GR S ELNKMRET+ RV
Sbjct: 362 LEQNKQLLLPQLRSTTSMELGCDARGYSRAGYDKVTWYCAILVGRQSVELNKMRETMCRV 421

Query: 420 QETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGA 479
           Q+ L   D+S+ A  D S+ PAA A ++KRL+FAWLDGEAQ++YC FY+ SETS++TCG 
Sbjct: 422 QDALSKYDDSDDASKDPSITPAASAHKSKRLSFAWLDGEAQNKYCFFYVQSETSYDTCGT 481

Query: 480 RRDMSDVPRLFIVRYKRNTTED---EAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDE 536
           RR   DVPR+ IVRY RN TE    E K  + P+ +W + +  +VDPA+QLVV Y+G+ E
Sbjct: 482 RRAPIDVPRILIVRYHRNATETANAEQKSSKWPKTVWQS-EADDVDPAAQLVVSYDGTAE 540

Query: 537 IPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRSAQSLFSKSIGMKQRIRNI 596
           IPQI KW+S+++ DGD+++LPFYRAKTPELVPE +EP+     +S   K++   Q++ ++
Sbjct: 541 IPQIIKWLSKMVDDGDNRNLPFYRAKTPELVPESAEPM-----RSGVPKTVKATQKLLSL 595

Query: 597 MGQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRA-HPSQSGQPGPS 644
             +  DYL DPR+GP LLL AL+S G +W MR +     P+Q+ QP P+
Sbjct: 596 WNRIKDYLADPRMGPTLLLGALLSAGNVWWMRSRSSTQQPAQTNQPSPN 644

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
WB|WBGene00001026	813	dnj-8 [Caenorhabditis elegans	0.518	0.419	0.245	5.1e-13
UNIPROTKB|E7EP04	275	DNAJC10 "DnaJ homolog subfamil	0.322	0.770	0.243	3.2e-11
UNIPROTKB|Q3B7W8	332	DNAJC10 "DNAJC10 protein" [Hom	0.322	0.638	0.243	8.8e-11
UNIPROTKB|F1N151	793	DNAJC10 "Uncharacterized prote	0.352	0.292	0.228	1.6e-10
UNIPROTKB|Q8IXB1	793	DNAJC10 "DnaJ homolog subfamil	0.322	0.267	0.243	5.4e-10
MGI|MGI:1914111	793	Dnajc10 "DnaJ (Hsp40) homolog,	0.323	0.268	0.25	1.8e-09
RGD|1307813	793	Dnajc10 "DnaJ (Hsp40) homolog,	0.313	0.259	0.255	2.4e-09
RGD|1359395	771	Dnajc16 "DnaJ (Hsp40) homolog,	0.285	0.243	0.291	3.8e-09
UNIPROTKB|E1BRA6	798	DNAJC10 "Uncharacterized prote	0.310	0.255	0.226	5.2e-09
UNIPROTKB|E2RCY4	794	DNAJC10 "Uncharacterized prote	0.323	0.268	0.243	8.2e-09

WB|WBGene00001026 dnj-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 207 (77.9 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 96/391 (24%), Positives = 173/391 (44%)

Query:    17 LILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD 76
             ++L  +G  + LV    S     Y  LGI   +S +++K AY+  + +W+  +     A 
Sbjct:     1 MLLLRIGSLFLLVSSALSQKEDPYKVLGISRRASAKEIKSAYKSLAREWHPDKRKDEAAS 60

Query:    77 --FLKIQYAYELLTDPLWKRNYDVYG-IDEQLHI---LEKVREQYGEESYSRIDLPLLDA 130
               F++I  AYE+L+DPL K  YD +G  D+        E+ R  YG   +          
Sbjct:    61 GRFMEIAEAYEVLSDPLRKERYDRFGTFDDVKQFEDNAERARSFYGFGGFGGFGF----- 115

Query:   131 TDHSVHAFNVVTS-EDFP-SIFHDS--KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA 186
              D SV  +    S + +   I  +S  KP+++ +YS+   +C +F   WK + A LE + 
Sbjct:   116 -DESVFEYKYRMSYQQYQFKILEESNTKPYIVYIYSNYCQMCYRFHPQWKRVIADLEPLG 174

Query:   187 NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246
               G+  +   R   +L E+  I  +      P+LVA   G        R +   S  ++ 
Sbjct:   175 Y-GIATVNGNR-EQNLMEKMRISHV------PALVAIVEG---RIIPMRIDSSFSDRSIV 223

Query:   247 DWFATAILKLPRIFYYTKESMG---KNFLAK-TGPHKVKVIFFSKTGERASPFVRQI--S 300
               FA  ++  P  ++ TK + G     F+ +    +K+ V+ F   G  A+P +R +  +
Sbjct:   224 A-FAQKVI--PS-YFMTKINSGVMLSRFVDQWKSSNKISVVIF---GAAANPRIRYLLAA 276

Query:   301 RNYWAYASFAFVLWRE--EESSIWWNTFEVESAPA--IVFLKDPGVKPVVYYGSFNNSR- 355
               Y  +A FA+V   +  +E  I   + +++      I+   D   +  V   S + ++ 
Sbjct:   277 MKYSQFARFAYVSLSDSSDEVRILRESVDIKCVQCENILIYGDMEHEDAVDRLSISEAKK 336

Query:   356 -----LSEVMEQNKLQELPQLRSVTSMELGC 381
                  + E +E+NK+  LP+L S   ++  C
Sbjct:   337 LTMEAIDEFIERNKVLTLPRLSSQELLDEVC 367

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|E7EP04 DNAJC10 "DnaJ homolog subfamily C member 10" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 55/226 (24%), Positives = 99/226 (43%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG ++ L   +    QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG-EKGLE--DNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGELW 149

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   150 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 209

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+   V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   210 GMAP-VKYH-GDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAF 253

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q3B7W8 DNAJC10 "DNAJC10 protein" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 55/226 (24%), Positives = 99/226 (43%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG ++ L   +    QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG-EKGLE--DNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGELW 149

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   150 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 209

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+   V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   210 GMAP-VKYH-GDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAF 253

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1N151 DNAJC10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 57/249 (22%), Positives = 110/249 (44%)

Query:    17 LILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST 74
             ++LF L ++  ++V         Y  LG+   +S  ++++A++K + K +  +    P+ 
Sbjct:    17 VMLFFLVMYMAILV---GTDQDFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA 73

Query:    75 -ADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDH 133
              +DFLK+  AYE+L D   ++ YD YG   +  + +    QY   +Y R D  + D    
Sbjct:    74 HSDFLKVNRAYEVLKDEDLRKKYDKYG---EKGLADNQGGQYESWNYYRYDFGIYDDDPE 130

Query:   134 SVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL 193
              +     +   +F +  +  + W +  YS G   C   +  W+  A  ++G+   G V  
Sbjct:   131 II----TLDRREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNC 186

Query:   194 GDIRLATHLAERKPIGQIF-FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFAT 251
             GD R+   +        +F FR G+ + V +  G +S + +  F  +     VT+ W   
Sbjct:   187 GDDRMLCRMKGVNSYPSLFIFRSGMAA-VKYH-GDRSKESLMNFAMQHVRSTVTELWTGN 244

Query:   252 AILKLPRIF 260
              +  +   F
Sbjct:   245 FVNSIQTAF 253

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|Q8IXB1 DNAJC10 "DnaJ homolog subfamily C member 10" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 55/226 (24%), Positives = 99/226 (43%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG ++ L   +    QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG-EKGLE--DNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGELW 149

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   150 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 209

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+   V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   210 GMAP-VKYH-GDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAF 253

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IDA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IDA

GO:0051787 "misfolded protein binding" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0032781 "positive regulation of ATPase activity" evidence=ISS

GO:0001671 "ATPase activator activity" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0051087 "chaperone binding" evidence=IDA

MGI|MGI:1914111 Dnajc10 "DnaJ (Hsp40) homolog, subfamily C, member 10" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 57/228 (25%), Positives = 103/228 (45%)

Query:    24 LFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKI 80
             + Y +VV+      + Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI
Sbjct:    23 ILYVVVVVGTD--QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKI 80

Query:    81 QYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNV 140
               AYE+L D   ++ YD YG ++ L   +    QY   SY R D  + D     +     
Sbjct:    81 NRAYEVLKDEDLRKKYDKYG-EKGLE--DNQGGQYESWSYYRYDFGIYDDDPEII----T 133

Query:   141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT 200
             +   +F +  +  + W +  YS G   C   +  W+  A  ++G+   G V  GD R+  
Sbjct:   134 LERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLC 193

Query:   201 HLAERKPIGQIF-FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247
              +        +F FR G+ + V +  G +S + +  F  +     VT+
Sbjct:   194 RMKGVNSYPSLFIFRSGMAA-VKYN-GDRSKESLVAFAMQHVRSTVTE 239

GO:0001671 "ATPase activator activity" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISA;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;IDA

GO:0032781 "positive regulation of ATPase activity" evidence=IMP

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=ISO

GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISO;IDA

GO:0051117 "ATPase binding" evidence=ISO;IPI

GO:0051787 "misfolded protein binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISO

RGD|1307813 Dnajc10 "DnaJ (Hsp40) homolog, subfamily C, member 10" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
 Identities = 56/219 (25%), Positives = 98/219 (44%)

Query:    22 LGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFL 78
             L L    VV+      + Y  LG+   +S  ++++A++K + K +  +    P+   DFL
Sbjct:    19 LCLLVLYVVIVVGTDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFL 78

Query:    79 KIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAF 138
             KI  AYE+L D   ++ YD YG ++ L   +    QY   SY R D  + D     +   
Sbjct:    79 KINRAYEVLKDEDLRKKYDKYG-EKGLE--DNQGGQYESWSYYRYDFGIYDDDPEII--- 132

Query:   139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL 198
               +   +F +  +  + W +  YS G   C   +  W+  A  ++G+   G V  GD R+
Sbjct:   133 -TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM 191

Query:   199 ATHLAERKPIGQIF-FRRGLPSLVAFPPGCKSSDCMTRF 236
                +        +F FR G+ + V +  G +S + +  F
Sbjct:   192 LCRMKGVNSYPSLFIFRSGMAA-VKYN-GDRSKESLVSF 228

GO:0001671 "ATPase activator activity" evidence=IEA;ISO

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0032781 "positive regulation of ATPase activity" evidence=ISO

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA;ISO

GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA;ISO

GO:0051117 "ATPase binding" evidence=IEA;ISO

GO:0051787 "misfolded protein binding" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA;ISO

RGD|1359395 Dnajc16 "DnaJ (Hsp40) homolog, subfamily C, member 16" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 62/213 (29%), Positives = 100/213 (46%)

Query:     7 ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN 66
             + ++   W  LI+  L +   L  L   F P  Y  LG+   +S   +K+AY+K + +W+
Sbjct:     3 LKRLSISWQFLIVLVL-ILQSLSAL--DFDP--YRVLGVSRTASQADIKKAYKKLAREWH 57

Query:    67 SGE-EIPSTAD-FLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQ---------Y 115
               + + P   D F++I  AYE+L++   + NYD YG   +    ++ RE          Y
Sbjct:    58 PDKNKDPGAEDKFIQISKAYEILSNEEKRTNYDHYGDAGENQGYQQQREYRFRHFHENFY 117

Query:   116 GEESYSRIDL--PLLDATDHS--VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQF 171
              +ES+          D+ D    +H F+   +E  P  F   KP+LI++ SD  + C   
Sbjct:   118 FDESFFHFPFNSERRDSIDEKYLLH-FSHYVNEVVPDSF--KKPYLIKITSDWCFSCIHI 174

Query:   172 SGAWKTIAALLEGIA-NTGMVELG-DIRLATHL 202
                WK +   LEG+    G+V  G + RLA HL
Sbjct:   175 EPIWKEVVQELEGLGVGIGVVHAGYERRLAHHL 207

GO:0016021 "integral to membrane" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|E1BRA6 DNAJC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 49/216 (22%), Positives = 97/216 (44%)

Query:    39 HYDALGIKPYSSVEQVKEAYEKFSSKWN--SGEEIPSTAD-FLKIQYAYELLTDPLWKRN 95
             +Y  LG+   +S  ++++A++K + K +    +  P+  D FLKI  AYE+L D   ++ 
Sbjct:    35 YYSLLGVSKEASSREIRQAFKKLALKLHPDKNQNDPNAHDNFLKINRAYEVLKDEDLRKK 94

Query:    96 YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
             YD YG ++ L   ++   +Y    Y R D  + D     +     +   +F +  +  + 
Sbjct:    95 YDKYG-EKGLEDQQQ-GGRYESWHYYRYDFGIYDDDPEII----TLDRGEFDAAVNSGEL 148

Query:   156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
             W +  YS     C   +  W+  A  ++G+   G V  GD R+   +        ++ F+
Sbjct:   149 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDNRMLCRIKGINSYPSLYVFK 208

Query:   215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250
              G+  +  +  G +S + +  F  +     VT+ +A
Sbjct:   209 TGMQPVKYY--GDRSKESLKNFAMQYVTSTVTELWA 242

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA

UNIPROTKB|E2RCY4 DNAJC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
 Identities = 55/226 (24%), Positives = 100/226 (44%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+  +DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHSDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG  E+     +   QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG--EKGLADNQEGGQYESWNYYRYDFGIYDDDPEII----TLDRREFDAAVNSGELW 150

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   151 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 210

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+ + V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   211 GMAA-VKYH-GDRSKESLVSFAMQHVRRTVTELWTGNFVNSIQTAF 254

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.123.178.1 hypothetical protein (695 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	658
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-08
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-07
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-06
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-06
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-05
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-05
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	4e-05
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	9e-05
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-04
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-04
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-04
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	3e-04
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	5e-04
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	0.001
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	0.001
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	0.001
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	0.001
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	0.001
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	0.001
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	0.002
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	0.002
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	0.002
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	0.002
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	0.004
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
          +Y+ LG+   +S E++K+AY K + K+    N G+   +   F +I  AYE+L+DP  + 
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPA-AEEKFKEINEAYEVLSDPEKRA 60

Query: 95 NYD 97
           YD
Sbjct: 61 IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDP 90
            +Y+ LG+   +S++++K+AY K + K+    N G++  +   F +I  AYE+L+DP
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58

Length = 60

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 9/67 (13%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD--FLKIQYAYELLTDPLWK 93
           Y+ LG+   +S E++K+AY K + K+    N G++    A+  F +I  AYE+L+DP  +
Sbjct: 7   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK---EAEEKFKEINEAYEVLSDPEKR 63

Query: 94  RNYDVYG 100
             YD +G
Sbjct: 64  AAYDQFG 70

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTD 89
          +YD LG+ P +S E++K+AY K + K+    N  +   +   F +I  AYE+L+D
Sbjct: 2  YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPE-AEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD----FLKIQYAYELLTDPLWKR 94
           +Y  LG+   +S E++K+AY K + K++  +  P  A+    F ++  AYE+L+D   + 
Sbjct: 3   YYTILGVSKTASPEEIKKAYRKLAVKYHPDKN-PGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 95  NYDVYGID 102
           +YD YG D
Sbjct: 62  SYDRYGKD 69

Length = 391

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNS--GEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +SV++VK+AY K + K++    +   +   F +++ AY+ L+DP  K +Y
Sbjct: 6   YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHY 65

Query: 97  DVYG 100
           D +G
Sbjct: 66  DQFG 69

Length = 371

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 18/113 (15%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
            +T ++F  +  DSK  L++ Y+     C   +  ++ +A  L+G         G + +A
Sbjct: 2   ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVA 53

Query: 200 ----THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW 248
               T       +   +  RG P++  FP G K      ++EG  +++++ ++
Sbjct: 54  KVDCT---ANNDLCSEYGVRGYPTIKLFPNGSKE---PVKYEGPRTLESLVEF 100

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   ++ E++K AY++   +W    +      +   F +IQ AYE+L+DP  + 
Sbjct: 6   YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65

Query: 95  NYDVYG 100
            YD +G
Sbjct: 66  MYDRFG 71

Length = 369

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +S +++K+AY K S K++        AD  F +I  AYE+L+D   +  Y
Sbjct: 6   YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQY 65

Query: 97  DVYG 100
           D +G
Sbjct: 66  DQFG 69

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNS--GEEIPSTADFLKIQYAYELLTDPLWKRNYD 97
           YD LG+   +S +++K+AY K S K++    +E  +   + ++Q AYE L+DP  +  YD
Sbjct: 7   YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66

Query: 98  VYG 100
            YG
Sbjct: 67  QYG 69

Length = 380

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y  LG+   +S E +K+A+ + + KW    + G +  +   F +I  AYE+L+DP  +R
Sbjct: 5   YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64

Query: 95  NYDVYG 100
            YD  G
Sbjct: 65  QYDQTG 70

Length = 365

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   ++ E++K+AY + + K+    N G++  +   F +I  AYE+L+DP  + 
Sbjct: 7   YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRA 65

Query: 95  NYDVYG 100
            YD +G
Sbjct: 66  QYDQFG 71

Length = 386

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 38  SHYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWK 93
           S+YD LG+   ++ E++K AY K + K+    N G +  S   F +   AYE+L DP  +
Sbjct: 5   SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKR 63

Query: 94  RNYDVYG 100
           + YD +G
Sbjct: 64  QAYDQFG 70

Length = 372

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 14/106 (13%)

Query: 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAE 204
           DF +  +  + W +  YS     C   +  W+  A  ++G+   G V  GD R+   L  
Sbjct: 10  DFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM---LCR 66

Query: 205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250
            + +         PSL  FP G        ++ G+ S +++   FA
Sbjct: 67  SQGV------NSYPSLYVFPSGMNP----EKYYGDRSKESLVK-FA 101

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG+   +S E++K+AY K + K+    N  +E  +   F +I  AYE+L+DP  +  
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE--AEEKFKEINEAYEVLSDPEKRAQ 60

Query: 96  YDVYG 100
           YD +G
Sbjct: 61  YDQFG 65

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 15/98 (15%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWN-------SGEEIPSTADFLKIQYAYELLTDPL 91
           +Y+ LG+   ++ E++K+AY + + K++         EE      F +I  AY++L+DP 
Sbjct: 5   YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEE-----KFKEINEAYQVLSDPE 59

Query: 92  WKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLD 129
            ++ YD +G           ++Q G+E +S      ++
Sbjct: 60  KRKLYDQFGHAA---FSGSGQQQQGQEGFSDFGGGNIE 94

Length = 382

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +SVE +K+AY K + K+  +  +E  +   F +I  AY +L+D   +  Y
Sbjct: 7   YYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQY 66

Query: 97  DVY---GIDEQ 104
           D +   GID Q
Sbjct: 67  DRFGHAGIDNQ 77

Length = 377

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLATHL-AERKPI-- 208
           KP+LI++ SD  + C      WK +   LE +      V  G + RLA  L A   P   
Sbjct: 25  KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIV 84

Query: 209 ----GQIFFRR----GLPSLVAF 223
               GQ+ F          +V F
Sbjct: 85  GIINGQVTFYHDSSFTKQHVVDF 107

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y+ LGI   +  +++K+A+ K + K++        A   F +I  A ++L++P  + NY
Sbjct: 4   YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 97  DVYGID 102
           D YG D
Sbjct: 64  DKYGHD 69

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNS--GEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +Y  LG+   +S +++K+A++K + K++    +   +   F +I  AY +L+DP  +R Y
Sbjct: 6   YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIY 65

Query: 97  DVYG 100
           D YG
Sbjct: 66  DTYG 69

Length = 291

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y  LG+   +S  ++K AY K + +     N  EE  +   F +I  AYE+L+DP  +R
Sbjct: 5   YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEE--AQEKFKEISVAYEVLSDPEKRR 62

Query: 95  NYDVYG 100
             D+ G
Sbjct: 63  IVDLGG 68

Length = 378

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG++  +S +++K+A+ K + K+    N G +  +   F +I  AY++L+DP  K 
Sbjct: 6   YYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKA 64

Query: 95  NYDVYG 100
            YD +G
Sbjct: 65  QYDQFG 70

Length = 380

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +S +++K AY K + K++        A   F +I  AY +L+D   + +Y
Sbjct: 4   YYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHY 63

Query: 97  DVYG 100
           D +G
Sbjct: 64  DRFG 67

Length = 371

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 33  RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--------FLKIQYAY 84
           R F P  Y+ LGI   +S   +K+ Y   S K++  +  P   +        +  I  AY
Sbjct: 96  RGFDP--YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAY 153

Query: 85  ELLTDPLWKRNYDVYGIDE 103
            LLTD   + NY  YG  +
Sbjct: 154 GLLTDKKRRENYLNYGTPD 172

Length = 610

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   +S E++K++Y K + K+    N G++  +   F +   AYE+L+DP  + 
Sbjct: 6   YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKRG 64

Query: 95  NYDVYG 100
            YD YG
Sbjct: 65  IYDQYG 70

Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	658
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
KOG4277	468	consensus Uncharacterized conserved protein, conta	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.95
PTZ00102	477	disulphide isomerase; Provisional	99.94
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.9
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.84
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.84
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.82
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.81
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.81
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.8
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.79
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.77
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.77
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.77
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.73
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.73
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.72
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.72
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.71
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.69
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.69
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.68
PRK14288	369	chaperone protein DnaJ; Provisional	99.68
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.67
PRK14296	372	chaperone protein DnaJ; Provisional	99.67
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.67
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.67
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.65
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.63
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.63
PRK14279	392	chaperone protein DnaJ; Provisional	99.62
PRK14286	372	chaperone protein DnaJ; Provisional	99.62
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.62
PRK14287	371	chaperone protein DnaJ; Provisional	99.61
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.61
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.61
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.61
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.61
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.61
PRK14298	377	chaperone protein DnaJ; Provisional	99.6
PRK14276	380	chaperone protein DnaJ; Provisional	99.6
PRK14282	369	chaperone protein DnaJ; Provisional	99.6
PRK14283	378	chaperone protein DnaJ; Provisional	99.6
PRK14285	365	chaperone protein DnaJ; Provisional	99.59
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.59
PRK14278	378	chaperone protein DnaJ; Provisional	99.59
PRK14299	291	chaperone protein DnaJ; Provisional	99.59
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.58
PRK14291	382	chaperone protein DnaJ; Provisional	99.58
PRK14280	376	chaperone protein DnaJ; Provisional	99.58
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PRK14277	386	chaperone protein DnaJ; Provisional	99.58
PRK14294	366	chaperone protein DnaJ; Provisional	99.58
PRK14297	380	chaperone protein DnaJ; Provisional	99.58
PRK14301	373	chaperone protein DnaJ; Provisional	99.57
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.57
PRK09381	109	trxA thioredoxin; Provisional	99.57
PRK14284	391	chaperone protein DnaJ; Provisional	99.57
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.57
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.56
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.56
PRK14281	397	chaperone protein DnaJ; Provisional	99.56
PRK14295	389	chaperone protein DnaJ; Provisional	99.56
PLN02309	457	5'-adenylylsulfate reductase	99.55
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.55
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.55
PRK10767	371	chaperone protein DnaJ; Provisional	99.54
PRK14290	365	chaperone protein DnaJ; Provisional	99.53
PHA02278	103	thioredoxin-like protein	99.53
PRK14300	372	chaperone protein DnaJ; Provisional	99.53
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.52
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.52
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.51
PRK14293	374	chaperone protein DnaJ; Provisional	99.51
PRK14292	371	chaperone protein DnaJ; Provisional	99.51
PRK14289	386	chaperone protein DnaJ; Provisional	99.5
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.5
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.5
PRK10996	139	thioredoxin 2; Provisional	99.49
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.48
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.47
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.45
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.45
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.44
PTZ00102	477	disulphide isomerase; Provisional	99.44
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.44
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.43
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.43
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.43
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.43
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.43
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.42
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.42
PHA03102	153	Small T antigen; Reviewed	99.42
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.4
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.39
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.35
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.34
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.34
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.33
PTZ00051	98	thioredoxin; Provisional	99.31
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.31
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.3
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.27
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.26
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.26
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.23
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.18
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.17
PRK01356	166	hscB co-chaperone HscB; Provisional	99.17
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.15
PRK05014	171	hscB co-chaperone HscB; Provisional	99.14
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.11
PRK03578	176	hscB co-chaperone HscB; Provisional	99.11
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.1
PRK00294	173	hscB co-chaperone HscB; Provisional	99.07
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.06
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.06
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.06
PTZ00100	116	DnaJ chaperone protein; Provisional	99.04
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.02
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.02
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.01
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.0
PTZ00062	204	glutaredoxin; Provisional	98.92
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.92
PHA02624	647	large T antigen; Provisional	98.91
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.91
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.87
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.84
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.82
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.78
PHA02125	75	thioredoxin-like protein	98.74
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.73
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.72
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.69
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.66
PRK01773	173	hscB co-chaperone HscB; Provisional	98.63
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.6
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.57
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.54
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.45
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.44
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.43
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.41
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.36
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.35
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.33
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.32
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.3
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.28
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.28
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.24
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.24
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.21
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.16
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.15
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.09
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.03
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.02
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.02
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.02
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.99
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.98
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.98
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.97
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.92
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.87
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.86
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.84
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.83
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.82
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.77
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.74
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.72
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.69
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.67
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.66
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.65
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	97.62
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.55
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.54
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.51
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.5
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	97.48
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.48
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.42
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.42
smart00594	122	UAS UAS domain.	97.41
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.39
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	97.39
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.36
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.34
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.32
PTZ00056	199	glutathione peroxidase; Provisional	97.29
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.27
KOG4277	468	consensus Uncharacterized conserved protein, conta	97.25
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.24
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.24
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	97.15
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.15
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.15
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.14
PLN02412	167	probable glutathione peroxidase	97.14
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	97.12
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.11
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.11
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	97.08
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.04
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.03
PLN02309	457	5'-adenylylsulfate reductase	97.03
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	96.99
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.98
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	96.98
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	96.97
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	96.96
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	96.9
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.88
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	96.86
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.84
PF13728	215	TraF: F plasmid transfer operon protein	96.82
PRK09381	109	trxA thioredoxin; Provisional	96.8
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.73
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	96.71
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	96.69
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	96.68
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	96.64
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	96.61
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	96.59
PRK10996	139	thioredoxin 2; Provisional	96.59
PHA02278	103	thioredoxin-like protein	96.55
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	96.53
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.43
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	96.4
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	96.31
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	96.3
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.27
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.18
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	96.13
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	96.09
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	96.09
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	96.07
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	96.02
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	95.98
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	95.97
PRK10606	183	btuE putative glutathione peroxidase; Provisional	95.97
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	95.86
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	95.86
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	95.86
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	95.82
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	95.81
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	95.81
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.8
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	95.75
PTZ00256	183	glutathione peroxidase; Provisional	95.73
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	95.71
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	95.7
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	95.68
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	95.66
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	95.62
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	95.6
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	95.58
cd02947	93	TRX_family TRX family; composed of two groups: Gro	95.54
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	95.44
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	95.33
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	95.29
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	95.24
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.21
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	95.15
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	94.99
PRK11200	85	grxA glutaredoxin 1; Provisional	94.98
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	94.98
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	94.95
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	94.94
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	94.93
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	94.91
KOG3425	128	consensus Uncharacterized conserved protein [Funct	94.85
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.81
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	94.65
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	94.51
KOG1672	211	consensus ATP binding protein [Posttranslational m	94.45
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	94.24
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	94.23
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	94.11
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	94.04
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	93.89
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	93.83
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	93.81
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	93.69
PTZ00051	98	thioredoxin; Provisional	93.6
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	93.48
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	93.41
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.26
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	93.25
PRK13190	202	putative peroxiredoxin; Provisional	92.95
PRK15000	200	peroxidase; Provisional	92.92
KOG2640	319	consensus Thioredoxin [Function unknown]	92.79
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	92.78
PTZ00253	199	tryparedoxin peroxidase; Provisional	92.57
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	92.23
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	91.84
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	91.65
KOG0431	453	consensus Auxilin-like protein and related protein	91.48
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	91.43
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	91.38
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	91.38
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	91.15
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	91.03
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	90.87
COG2143	182	Thioredoxin-related protein [Posttranslational mod	90.7
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	90.1
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	89.94
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	89.91
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	89.75
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	89.6
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	89.47
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	89.35
PRK10329	81	glutaredoxin-like protein; Provisional	89.2
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	88.84
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	88.81
PTZ00062	204	glutaredoxin; Provisional	88.65
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	88.42
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	88.4
PRK13191	215	putative peroxiredoxin; Provisional	88.27
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	87.34
PTZ00137	261	2-Cys peroxiredoxin; Provisional	87.24
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	86.62
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	86.2
PRK13599	215	putative peroxiredoxin; Provisional	86.13
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	86.05
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	85.99
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	85.99
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	85.86
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	85.8
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	85.48
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	85.09
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	83.96
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	82.87
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	81.82
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	81.06
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	80.64

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-35  Score=317.60  Aligned_cols=334  Identities=19%  Similarity=0.273  Sum_probs=254.7

Q ss_pred             cceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcc
Q 006171          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      ...|++||.+||+..|..+..+||+|||||||||++++|+|+++|+.|+..   +.+|+|||+++   ..+|.+|+    
T Consensus        24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~----   96 (493)
T KOG0190|consen   24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYE----   96 (493)
T ss_pred             ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhc----
Confidence            346899999999999999999999999999999999999999999999874   48999999955   56999999    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCC
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER  291 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~  291 (658)
                        |+|||||++|++|..    ..+|+|+|++++|+.|++++  .+|....+.+.+.++.|+.+.  ..+.+.+|.+....
T Consensus        97 --v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~--~~~vig~F~d~~~~  166 (493)
T KOG0190|consen   97 --VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKK--DVVVIGFFKDLESL  166 (493)
T ss_pred             --CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCC--ceEEEEEecccccc
Confidence              889999999999974    58999999999999999998  578777776666578888752  23444466543222


Q ss_pred             CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCC--CCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCc
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELP  369 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~--~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP  369 (658)
                       ...+-..|...++.+.|++..     ..++.++++++.  .+.+++++..+...+.|.|.++.+.|.+||..+++|++.
T Consensus       167 -~~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~  240 (493)
T KOG0190|consen  167 -AESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVT  240 (493)
T ss_pred             -hHHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccc
Confidence             233444555566777777432     456888888863  566999999888877788999999999999999999999


Q ss_pred             cccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCC
Q 006171          370 QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNK  448 (658)
Q Consensus       370 ~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~  448 (658)
                      .+|..+.....-      ..-     .+-++++.+ .....+.+++.++++++                      .|++ 
T Consensus       241 ~ft~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~e~~~~~~~~vAk----------------------~f~~-  286 (493)
T KOG0190|consen  241 EFTVANNAKIYS------SFV-----KLGLDFFVFFKCNRFEELRKKFEEVAK----------------------KFKG-  286 (493)
T ss_pred             eecccccceeec------ccc-----ccceeEEeccccccHHHHHHHHHHHHH----------------------hccc-
Confidence            999987543111      111     144566654 33367888999988888                      7776 


Q ss_pred             cEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCC-eEEEEEeecCCccccceeccccCcccccccccccCccccc
Q 006171          449 RLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVP-RLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQL  527 (658)
Q Consensus       449 ~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p-~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~  527 (658)
                      .++|+++|.+..++.++.|-..+.            ..| +++++    +..+  -||.      +   +.++.      
T Consensus       287 ~l~Fi~~d~e~~~~~~~~~Gl~~~------------~~~~~~v~~----~~~~--~Ky~------~---~~e~~------  333 (493)
T KOG0190|consen  287 KLRFILIDPESFARVLEFFGLEEE------------QLPIRAVIL----NEDG--SKYP------L---EEEEL------  333 (493)
T ss_pred             ceEEEEEChHHhhHHHHhcCcccc------------cCCeeEEee----cccc--cccc------C---ccccc------
Confidence            599999999888888887733321            124 66665    5554  3555      2   43322      


Q ss_pred             hhccCCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCCCC
Q 006171          528 VVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVP  568 (658)
Q Consensus       528 ~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l~~  568 (658)
                              +...|+.|+.+++.  +..+..++++++|+=++
T Consensus       334 --------~~~~ie~f~~~~l~--Gk~~p~~kSqpiPe~~~  364 (493)
T KOG0190|consen  334 --------DQENIESFVKDFLD--GKVKPHLKSQPIPEDND  364 (493)
T ss_pred             --------cHHHHHHHHHHHhc--CccccccccCCCCcccc
Confidence                    22469999999999  67777779999998776

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=267.32  Aligned_cols=279  Identities=19%  Similarity=0.286  Sum_probs=195.0

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc---ceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCC
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA---NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~---~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~  227 (658)
                      ..+..|+|.||||||+||+++.|+|.++.-+|+..+   +||++||+   ....+|.+++      |+|||||++|+++.
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT---~f~aiAnefg------iqGYPTIk~~kgd~  111 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT---RFPAIANEFG------IQGYPTIKFFKGDH  111 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc---cchhhHhhhc------cCCCceEEEecCCe
Confidence            467899999999999999999999999999998754   99999999   5566999999      99999999999986


Q ss_pred             CCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCc
Q 006171          228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYA  307 (658)
Q Consensus       228 ~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~  307 (658)
                      .     .+|.|+|+.++|++|+.+.  ..|-+..+....  ..|......+.|.++||+..   ..|++.....+-.+..
T Consensus       112 a-----~dYRG~R~Kd~iieFAhR~--a~aiI~pi~enQ--~~fehlq~Rhq~ffVf~Gtg---e~PL~d~fidAASe~~  179 (468)
T KOG4277|consen  112 A-----IDYRGGREKDAIIEFAHRC--AAAIIEPINENQ--IEFEHLQARHQPFFVFFGTG---EGPLFDAFIDAASEKF  179 (468)
T ss_pred             e-----eecCCCccHHHHHHHHHhc--ccceeeecChhH--HHHHHHhhccCceEEEEeCC---CCcHHHHHHHHhhhhe
Confidence            4     8999999999999999876  233333333222  23333334567999999832   2344433111111234


Q ss_pred             eEEEEEecccccHhHHhhcC-CCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCccccCcchhhhcccccCC
Q 006171          308 SFAFVLWREEESSIWWNTFE-VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGY  386 (658)
Q Consensus       308 ~f~~v~~~~~~s~~l~~~f~-V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~  386 (658)
                      ..+.+...   +++++-.++ .+..|++.+||+..- -+.++|  +.++|.+||+..++|-+-..++....+.+-     
T Consensus       180 ~~a~FfSa---seeVaPe~~~~kempaV~VFKDetf-~i~de~--dd~dLseWinRERf~~fLa~dgflL~EiG~-----  248 (468)
T KOG4277|consen  180 SVARFFSA---SEEVAPEENDAKEMPAVAVFKDETF-EIEDEG--DDEDLSEWINRERFPGFLAADGFLLAEIGA-----  248 (468)
T ss_pred             eeeeeecc---ccccCCcccchhhccceEEEcccee-EEEecC--chhHHHHHHhHhhccchhhcccchHHHhCc-----
Confidence            44444322   233444433 345899999998532 122233  567899999999999888888887776433     


Q ss_pred             cCCCCCCcccEEEEEEcCC------ChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccch
Q 006171          387 SRAGSDTTIWYCVILAGRL------SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQ  460 (658)
Q Consensus       387 ~~~~k~~~~~lcVi~~~~~------~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q  460 (658)
                        +||     ++++++.++      +.++.++.....++++.++.+-                .+ ..+++|+|+||   
T Consensus       249 --sGK-----LVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~p----------------df-h~dFQF~hlDG---  301 (468)
T KOG4277|consen  249 --SGK-----LVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHP----------------DF-HNDFQFAHLDG---  301 (468)
T ss_pred             --CCc-----eEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhCh----------------hh-hhhceeeccch---
Confidence              465     888887653      3455666666666666444310                01 24699999999   


Q ss_pred             HHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceec
Q 006171          461 DRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIE  506 (658)
Q Consensus       461 ~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~  506 (658)
                      .++++.+++...+            .|+++|+    |.+.  +.|-
T Consensus       302 nD~~nqilM~als------------~P~l~i~----Ntsn--qeYf  329 (468)
T KOG4277|consen  302 NDLANQILMAALS------------EPHLFIF----NTSN--QEYF  329 (468)
T ss_pred             hHHHHHHHHHhhc------------CCeEEEE----ecCc--hhee
Confidence            7889988887652            4999999    8887  5554

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.95  E-value=6.6e-27  Score=260.38  Aligned_cols=332  Identities=16%  Similarity=0.233  Sum_probs=234.7

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..||.++|++.+.++++++|.||||||++|+++.|.|.++|+.+++.   +.++.|||+++   ..+|++++      
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~l~~~~~------   72 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE---KDLAQKYG------   72 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc---HHHHHhCC------
Confidence            3688999999999988899999999999999999999999999999764   58999999955   45999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCCCCC
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERA  292 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~  292 (658)
                      |.+|||+++|++|..   ....|.|.++.++|++|+.+.+  .|....+++.+.++.|+..   +.+.++ ++.+..+..
T Consensus        73 i~~~Pt~~~~~~g~~---~~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~---~~~~vi~~~~~~~~~~  144 (462)
T TIGR01130        73 VSGYPTLKIFRNGED---SVSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLAD---DDVVVIGFFKDLDSEL  144 (462)
T ss_pred             CccccEEEEEeCCcc---ceeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhc---CCcEEEEEECCCCcHH
Confidence            889999999998853   1478999999999999999882  2344446555557888865   234445 444333333


Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCe--eeecCCC--ChHHHHHHHHhhccCCC
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQEL  368 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p--~~y~g~~--~~~~L~~fi~~~~~~~v  368 (658)
                      ...+..+|..+++...+ ++...   ...+.++++.. .+++++|+......  ..|.|+.  +.+.|.+||+.+.+|++
T Consensus       145 ~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v  219 (462)
T TIGR01130       145 NDTFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLV  219 (462)
T ss_pred             HHHHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCce
Confidence            44556677777655442 22211   24567777764 46667776543333  2467766  45799999999999999


Q ss_pred             ccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CC-hhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcC
Q 006171          369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LS-PELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR  446 (658)
Q Consensus       369 P~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~-~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~  446 (658)
                      ++++..+... .+..      +     .++++++.. .+ ..++.+.+.++++++                      .++
T Consensus       220 ~~~~~~~~~~-~~~~------~-----~~~~l~~~~~~~~~~~~~~~~~~~~~a~----------------------~~~  265 (462)
T TIGR01130       220 GEFTQETAAK-YFES------G-----PLVVLYYNVDESLDPFEELRNRFLEAAK----------------------KFR  265 (462)
T ss_pred             EeeCCcchhh-HhCC------C-----CceeEEEEecCCchHHHHHHHHHHHHHH----------------------HCC
Confidence            9999887654 3311      0     244444432 22 224677778877777                      676


Q ss_pred             CCcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCcccc
Q 006171          447 NKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQ  526 (658)
Q Consensus       447 ~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~  526 (658)
                      +..+.|+|+|+.....+++.|....            .+.|.++|+    |.+.+ .+|.      +   +++       
T Consensus       266 ~~~i~f~~~d~~~~~~~~~~~~~~~------------~~~P~~vi~----~~~~~-~~y~------~---~~~-------  312 (462)
T TIGR01130       266 GKFVNFAVADEEDFGRELEYFGLKA------------EKFPAVAIQ----DLEGN-KKYP------M---DQE-------  312 (462)
T ss_pred             CCeEEEEEecHHHhHHHHHHcCCCc------------cCCceEEEE----eCCcc-cccC------C---CcC-------
Confidence            6579999999988888888773221            246999998    55431 2232      1   211       


Q ss_pred             chhccCCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCC
Q 006171          527 LVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL  566 (658)
Q Consensus       527 ~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l  566 (658)
                             ..+.+.|.+||.+++.  +...+.+.++++|+-
T Consensus       313 -------~~~~~~i~~fi~~~~~--g~~~~~~~se~~p~~  343 (462)
T TIGR01130       313 -------EFSSENLEAFVKDFLD--GKLKPYLKSEPIPED  343 (462)
T ss_pred             -------CCCHHHHHHHHHHHhc--CCCCeeeccCCCCcc
Confidence                   1255899999999998  566666678888764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=99.94  E-value=4e-25  Score=247.84  Aligned_cols=317  Identities=15%  Similarity=0.222  Sum_probs=219.6

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..|+.++|+..+.+++.+||.||||||+||++++|+|+++|+.++.   .+.++.|||+++   ..+|++++      
T Consensus        33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~---~~l~~~~~------  103 (477)
T PTZ00102         33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE---MELAQEFG------  103 (477)
T ss_pred             CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC---HHHHHhcC------
Confidence            468899999999998888999999999999999999999999998864   358999999955   45999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCCCCC
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERA  292 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~  292 (658)
                      |++|||+++|.+|..     ..|.|.+++++|++|+.+..  .|....+++.+....+..   ...+.++ .+.+..+..
T Consensus       104 i~~~Pt~~~~~~g~~-----~~y~g~~~~~~l~~~l~~~~--~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  173 (477)
T PTZ00102        104 VRGYPTIKFFNKGNP-----VNYSGGRTADGIVSWIKKLT--GPAVTEVESASEIKLIAK---KIFVAFYGEYTSKDSEL  173 (477)
T ss_pred             CCcccEEEEEECCce-----EEecCCCCHHHHHHHHHHhh--CCCceeecCHHHHHHhhc---cCcEEEEEEeccCCcHH
Confidence            889999999999864     48999999999999999873  455555555433444332   2223333 444333222


Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCcccc
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLR  372 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lt  372 (658)
                      ...+..+|..+++...|..+.  +.            ..+.+++++..+.... +.+..+.++|.+||+.+.+|++.+++
T Consensus       174 ~~~f~~~a~~~~~~~~F~~~~--~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~fI~~~~~P~~~~~~  238 (477)
T PTZ00102        174 YKKFEEVADKHREHAKFFVKK--HE------------GKNKIYVLHKDEEGVE-LFMGKTKEELEEFVSTESFPLFAEIN  238 (477)
T ss_pred             HHHHHHHHHhccccceEEEEc--CC------------CCCcEEEEecCCCCcc-cCCCCCHHHHHHHHHHcCCCceeecC
Confidence            334455788887776665432  11            2467888887655443 43445889999999999999999999


Q ss_pred             CcchhhhcccccCCcCCCCCCcccEEEEEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEE
Q 006171          373 SVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTF  452 (658)
Q Consensus       373 s~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F  452 (658)
                      ..+.....-       .+      ..++++....++.+...+.++++|+                      +++++ +.|
T Consensus       239 ~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~A~----------------------~~~~~-~~f  282 (477)
T PTZ00102        239 AENYRRYIS-------SG------KDLVWFCGTTEDYDKYKSVVRKVAR----------------------KLREK-YAF  282 (477)
T ss_pred             ccchHHHhc-------CC------ccEEEEecCHHHHHHHHHHHHHHHH----------------------hccCc-eEE
Confidence            998754211       12      2233333333455667788888887                      66554 899


Q ss_pred             EEEeccchHH-HHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhcc
Q 006171          453 AWLDGEAQDR-YCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRY  531 (658)
Q Consensus       453 ~wvd~~~q~~-~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~  531 (658)
                      +|+|+..... +++.|..              ...|.++|.    +...   ||.      +   +++ .          
T Consensus       283 ~~vd~~~~~~~~~~~~gi--------------~~~P~~~i~----~~~~---~y~------~---~~~-~----------  321 (477)
T PTZ00102        283 VWLDTEQFGSHAKEHLLI--------------EEFPGLAYQ----SPAG---RYL------L---PPA-K----------  321 (477)
T ss_pred             EEEechhcchhHHHhcCc--------------ccCceEEEE----cCCc---ccC------C---Ccc-c----------
Confidence            9999976554 5555522              134888776    3222   222      1   211 0          


Q ss_pred             CCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCC
Q 006171          532 NGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL  566 (658)
Q Consensus       532 ~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l  566 (658)
                      .+..+.+.|..|+.+++.  +.....+.++++|+-
T Consensus       322 ~~~~~~~~l~~Fv~~~~~--gk~~~~~~se~~p~~  354 (477)
T PTZ00102        322 ESFDSVEALIEFFKDVEA--GKVEKSIKSEPIPEE  354 (477)
T ss_pred             cccCCHHHHHHHHHHHhC--CCCCcccccCCCCCC
Confidence            011256899999999998  566666677777764

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.1e-24  Score=223.47  Aligned_cols=147  Identities=18%  Similarity=0.120  Sum_probs=105.4

Q ss_pred             CCccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhhhhhh-h
Q 006171           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHIL-E  109 (658)
Q Consensus        34 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~~~~-~  109 (658)
                      -..+|||+||||+++|+.+|||+||||||++||||+||   .++++|++|+.||||||||++|+.||+||+++..+.. .
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~   92 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD   92 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence            34789999999999999999999999999999999998   4678899999999999999999999999998876431 1


Q ss_pred             hhccc--cCccccccccCCCCCCCCCCcceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccc
Q 006171          110 KVREQ--YGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIAN  187 (658)
Q Consensus       110 ~~~~~--~~~~~f~~~~fgf~~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~  187 (658)
                      .+++.  ++.+.++..+||+..+.       ..+...      .....|++.++.-.|.||-...+.|+...+-..... 
T Consensus        93 ~~~g~~~~~~f~~~f~dfg~~~~g-------~~~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-  158 (336)
T KOG0713|consen   93 GEGGGGGNDIFSAFFGDFGVTVGG-------NPLEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-  158 (336)
T ss_pred             cccCCcccchHHHhhcccccccCC-------CcccCC------CCCCceEEeehhhchhhhhcccHHHHHhccCceeec-
Confidence            11121  34444444445443332       011111      345567777888889999888888877765443332 


Q ss_pred             eeeeecc
Q 006171          188 TGMVELG  194 (658)
Q Consensus       188 vg~Vdc~  194 (658)
                      .++.+|.
T Consensus       159 ~g~~~~~  165 (336)
T KOG0713|consen  159 PGTRKCN  165 (336)
T ss_pred             CcccccC
Confidence            3344443

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.84  E-value=1.7e-21  Score=175.93  Aligned_cols=107  Identities=8%  Similarity=0.031  Sum_probs=93.4

Q ss_pred             CCCCCCCCCcceEEEecCCCCCcc---ccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHH
Q 006171          126 PLLDATDHSVHAFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL  202 (658)
Q Consensus       126 gf~~~~~~~~~~V~~Lt~~nF~~~---v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~L  202 (658)
                      |||++.    ..|++||.+||++.   +.+++++||+||||||+||+.+.|.|+++|+.+++.+.|++|||+++.   .+
T Consensus         3 ~~~~~~----~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~---~l   75 (113)
T cd03006           3 PFFSQR----SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ---GK   75 (113)
T ss_pred             CccCCC----CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh---HH
Confidence            455543    36899999999987   478999999999999999999999999999999988899999999554   48


Q ss_pred             H-hhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          203 A-ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       203 c-~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      | ++++      |++||||++|++|..    ...|.|.++.+.|+.|+
T Consensus        76 ~~~~~~------I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          76 CRKQKH------FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             HHHhcC------CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence            8 5788      889999999998864    57899999999999884

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.84  E-value=8e-20  Score=183.80  Aligned_cols=214  Identities=15%  Similarity=0.229  Sum_probs=152.0

Q ss_pred             ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-----ccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-----IANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-----~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      ||.+|++..+++.+.++|.|||+||..++.+.|+|+++|..++.     .+..|.|||+   .+..|+.+|.      |+
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~   71 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN   71 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence            46789999999999999999999999999999999999998863     4478999999   6667999998      99


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhc-CCCcEEEEEEeCCCCCCcH
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT-GPHKVKVIFFSKTGERASP  294 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~-~~~~v~vl~f~~~~~~~~~  294 (658)
                      .|||+++|++|..   -..+|.|.|++++|.+|++++.. -| +....+   ++++-+.. +.....+.+|.++......
T Consensus        72 KyPTlKvfrnG~~---~~rEYRg~RsVeaL~efi~kq~s-~~-i~Ef~s---l~~l~n~~~p~K~~vIgyF~~kdspey~  143 (375)
T KOG0912|consen   72 KYPTLKVFRNGEM---MKREYRGQRSVEALIEFIEKQLS-DP-INEFES---LDQLQNLDIPSKRTVIGYFPSKDSPEYD  143 (375)
T ss_pred             cCceeeeeeccch---hhhhhccchhHHHHHHHHHHHhc-cH-HHHHHh---HHHHHhhhccccceEEEEeccCCCchHH
Confidence            9999999999975   23699999999999999999833 22 111111   22222222 2334556677644322333


Q ss_pred             HHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCee-eecCCC-ChHHHHHHHHhhccCCCcccc
Q 006171          295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSF-NNSRLSEVMEQNKLQELPQLR  372 (658)
Q Consensus       295 ~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~-~y~g~~-~~~~L~~fi~~~~~~~vP~lt  372 (658)
                      .++.+|.-+++...|..- .++.     ...-.-.+.+ +++|.++...+. .|.|.+ +...++.||..--.|+|-++|
T Consensus       144 ~~~kva~~lr~dc~f~V~-~gD~-----~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT  216 (375)
T KOG0912|consen  144 NLRKVASLLRDDCVFLVG-FGDL-----LKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT  216 (375)
T ss_pred             HHHHHHHHHhhccEEEee-cccc-----ccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence            456677778877765432 2221     1111111222 556655444442 589998 578899999999999999999


Q ss_pred             Ccchhh
Q 006171          373 SVTSME  378 (658)
Q Consensus       373 s~~~~~  378 (658)
                      -+|.-+
T Consensus       217 FeN~EE  222 (375)
T KOG0912|consen  217 FENAEE  222 (375)
T ss_pred             hccHHH
Confidence            999765

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=9.6e-21  Score=199.84  Aligned_cols=70  Identities=30%  Similarity=0.517  Sum_probs=66.1

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      ..|||+||||+++||.+|||+|||+||++||||+|+   .++++|++|++||||||||++|+.||+||..+..
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            579999999999999999999999999999999998   3778899999999999999999999999998854

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.81  E-value=6.2e-18  Score=173.75  Aligned_cols=329  Identities=16%  Similarity=0.239  Sum_probs=206.5

Q ss_pred             cCCCCCCCCCCcceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHH-------HHHHHHhhccc-ceeeeeccc
Q 006171          124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW-------KTIAALLEGIA-NTGMVELGD  195 (658)
Q Consensus       124 ~fgf~~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w-------~~~A~~l~g~~-~vg~Vdc~e  195 (658)
                      +||-|+|.+    .|+.||..||++++...+...|.||.|-- .-+.....|       +=+|+.|+..+ +||.||.. 
T Consensus        26 efP~YDGkD----RVi~LneKNfk~~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~-   99 (383)
T PF01216_consen   26 EFPEYDGKD----RVIDLNEKNFKRALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK-   99 (383)
T ss_dssp             SSSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT-
T ss_pred             CCccCCCcc----ceEEcchhHHHHHHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH-
Confidence            466777752    57999999999999889999999999874 333333333       22355666655 99999999 


Q ss_pred             chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhc
Q 006171          196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT  275 (658)
Q Consensus       196 ~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~  275 (658)
                        ....||+++|      +..-++|.+|+.|..     ++|.|.|+++-|+.|+...+. - ++.+|+....+..|..-.
T Consensus       100 --Kd~klAKKLg------v~E~~SiyVfkd~~~-----IEydG~~saDtLVeFl~dl~e-d-PVeiIn~~~e~~~Fe~ie  164 (383)
T PF01216_consen  100 --KDAKLAKKLG------VEEEGSIYVFKDGEV-----IEYDGERSADTLVEFLLDLLE-D-PVEIINNKHELKAFERIE  164 (383)
T ss_dssp             --TTHHHHHHHT--------STTEEEEEETTEE-----EEE-S--SHHHHHHHHHHHHS-S-SEEEE-SHHHHHHHHH--
T ss_pred             --HHHHHHHhcC------ccccCcEEEEECCcE-----EEecCccCHHHHHHHHHHhcc-c-chhhhcChhhhhhhhhcc
Confidence              5556999999      889999999999975     999999999999999999843 2 344566655466665533


Q ss_pred             CCCcEEEEE-EeCCCCCCcHHH---HHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC-
Q 006171          276 GPHKVKVIF-FSKTGERASPFV---RQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-  350 (658)
Q Consensus       276 ~~~~v~vl~-f~~~~~~~~~~~---~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~-  350 (658)
                        ..+++|. |.+..   +..+   ..+|..|..++.|..+.     .+.++++++++ .-.|-+|.++..+|+...|. 
T Consensus       165 --d~~klIGyFk~~~---s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p  233 (383)
T PF01216_consen  165 --DDIKLIGYFKSED---SEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKP  233 (383)
T ss_dssp             --SS-EEEEE-SSTT---SHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS
T ss_pred             --cceeEEEEeCCCC---cHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCC
Confidence              2477775 54322   3333   44888999999887764     45699999996 77899999999999988665 


Q ss_pred             CChHHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhcccccc
Q 006171          351 FNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDES  429 (658)
Q Consensus       351 ~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~  429 (658)
                      .+...|.+||+.|+-|++-+|+..++++.=-+.          .....++++.. .+++--++.+.|+++|+        
T Consensus       234 ~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd----------~~g~hIvaFaee~dpdG~efleilk~va~--------  295 (383)
T PF01216_consen  234 YTEEELVEFIEEHKRPTLRKLRPEDMFETWEDD----------IDGIHIVAFAEEEDPDGFEFLEILKQVAR--------  295 (383)
T ss_dssp             --HHHHHHHHHHT-S-SEEE--GGGHHHHHHSS----------SSSEEEEEE--TTSHHHHHHHHHHHHHHH--------
T ss_pred             CCHHHHHHHHHHhchhHhhhCChhhhhhhhccc----------CCCceEEEEecCCCCchHHHHHHHHHHHH--------
Confidence            467889999999999999999999988732221          11244566665 45666677788888888        


Q ss_pred             ccccccCCchHHHHhcCC-CcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccc
Q 006171          430 NAADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERK  508 (658)
Q Consensus       430 ~~~~~~~~~~~~A~~~~~-~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~  508 (658)
                                    .+.. ..++++|||-+.-+=.+.+.-...+.        +.. .|.|=|+    |.+-  ...-  
T Consensus       296 --------------~nt~np~LsivwIDPD~fPllv~yWE~tF~I--------dl~-~PqIGvV----nvtd--adsv--  344 (383)
T PF01216_consen  296 --------------DNTDNPDLSIVWIDPDDFPLLVPYWEKTFGI--------DLS-RPQIGVV----NVTD--ADSV--  344 (383)
T ss_dssp             --------------HCTT-TT--EEEE-GGG-HHHHHHHHHHHTT---------TT-S-EEEEE----ETTT--SEEE--
T ss_pred             --------------hcCcCCceeEEEECCCCCchhHHHHHhhcCc--------ccc-CCceeEE----eccc--cccc--
Confidence                          3222 35999999987665555544222222        332 3999999    7665  2333  


Q ss_pred             cCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          509 PRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       509 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                       |  ++..+.++          .+   +.++++.||.++++
T Consensus       345 -W--~dm~d~~d----------~p---t~~~LedWieDVls  369 (383)
T PF01216_consen  345 -W--MDMDDDDD----------LP---TAEELEDWIEDVLS  369 (383)
T ss_dssp             -E--C-STTTSS----------------HHHHHHHHHHHHC
T ss_pred             -h--hccCCccc----------CC---cHHHHHHHHHHHhc
Confidence             7  41122111          12   56899999999998

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.81  E-value=2.7e-20  Score=164.49  Aligned_cols=100  Identities=23%  Similarity=0.519  Sum_probs=90.6

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .|+.||.++|+..+.++++|+|.||||||++|+++.|.|+++|+.+++.+.+++|||++++   .+|++++      |++
T Consensus         2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~   72 (101)
T cd03003           2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR---MLCRSQG------VNS   72 (101)
T ss_pred             CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH---HHHHHcC------CCc
Confidence            3688999999999977799999999999999999999999999999988899999999554   5999998      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      |||+++|++|..    ...|.|.++.++|++|+
T Consensus        73 ~Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          73 YPSLYVFPSGMN----PEKYYGDRSKESLVKFA  101 (101)
T ss_pred             cCEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence            999999998854    57899999999999884

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.6e-19  Score=191.92  Aligned_cols=211  Identities=17%  Similarity=0.335  Sum_probs=156.3

Q ss_pred             EEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          139 NVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       139 ~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      ..++..+|...+ ....+|+|+||+|||+||+++.|+|+++++.|++.+.+|.|||+++   ..+|++++      |++|
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~---~~~~~~y~------i~gf  102 (383)
T KOG0191|consen   32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH---KDLCEKYG------IQGF  102 (383)
T ss_pred             hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh---HHHHHhcC------CccC
Confidence            445566666665 7899999999999999999999999999999999889999999955   45999999      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCC-----c-ceeeccchhhhhhhhhcCCCcEEEEEEeC---C
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP-----R-IFYYTKESMGKNFLAKTGPHKVKVIFFSK---T  288 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP-----~-~~~it~~~~~~~Fl~~~~~~~v~vl~f~~---~  288 (658)
                      |||++|.++ .   .+.+|.|.++++.+.+|+.+.+....     . +..++..+ ...+... .++.+.|.||.+   +
T Consensus       103 Ptl~~f~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~-~~~~~lv~f~aPwc~~  176 (383)
T KOG0191|consen  103 PTLKVFRPG-K---KPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKD-SDADWLVEFYAPWCGH  176 (383)
T ss_pred             cEEEEEcCC-C---ceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhc-cCcceEEEEeccccHH
Confidence            999999998 2   36899999999999999988643221     1 11122222 2222221 234455666543   3


Q ss_pred             CCCCcHHHHHHHHhhc--cCceEEEEEecccc-cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhcc
Q 006171          289 GERASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL  365 (658)
Q Consensus       289 ~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~-s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~  365 (658)
                      +....+.+..++..++  ..+.++.+   +++ ...++.+++|..+||+.+|+++...+..|.|..+.+.+..|++...-
T Consensus       177 ck~l~~~~~~~a~~~~~~~~v~~~~~---d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~  253 (383)
T KOG0191|consen  177 CKKLAPEWEKLAKLLKSKENVELGKI---DATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKER  253 (383)
T ss_pred             hhhcChHHHHHHHHhccCcceEEEee---ccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcC
Confidence            4456688888887764  34444444   332 46799999999999999999876623346788899999999988655


Q ss_pred             CC
Q 006171          366 QE  367 (658)
Q Consensus       366 ~~  367 (658)
                      ..
T Consensus       254 ~~  255 (383)
T KOG0191|consen  254 RN  255 (383)
T ss_pred             CC
Confidence            53

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.79  E-value=5.1e-20  Score=165.80  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=87.0

Q ss_pred             EEEecCCCCCccccCCCcEEEEEec--cCCC---CCCCChHHHHHHHHHhhcccceeeeecccc--hhhhHHHhhCCCCc
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHLAERKPIGQ  210 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYa--pwC~---~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--~~~~~Lc~k~~i~k  210 (658)
                      +++||..||+++|.+++.+||+|||  |||+   ||++|+|+|.++|..    +.||+|||++.  ..+..||++|+   
T Consensus         3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~---   75 (116)
T cd03007           3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK---   75 (116)
T ss_pred             eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence            6899999999999999999999999  9999   888888888887754    67999999521  12356999999   


Q ss_pred             cccee--eeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHHHHh
Q 006171          211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~--~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv~k~  252 (658)
                         |+  +||||++|++|..  ..+..|+|+ |++++|++|++++
T Consensus        76 ---I~~~gyPTl~lF~~g~~--~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          76 ---LDKESYPVIYLFHGGDF--ENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             ---CCcCCCCEEEEEeCCCc--CCCccCCCCcccHHHHHHHHHhc
Confidence               88  9999999999842  134789997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.77  E-value=2.9e-19  Score=158.64  Aligned_cols=101  Identities=21%  Similarity=0.451  Sum_probs=89.8

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..||.++|++.+ +++++++|.|||+||++|+++.|.|+++++++++.+.+++|||+++   ..+|++++      |+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~------i~   72 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY---ESLCQQAN------IR   72 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch---HHHHHHcC------CC
Confidence            46789999999988 6678999999999999999999999999999988889999999954   45999998      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCC-HhHHHHHH
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF  249 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs-~~~Lv~fv  249 (658)
                      ++||+++|.+|+.   ....|.|.++ .++|.+|+
T Consensus        73 ~~Pt~~~~~~g~~---~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          73 AYPTIRLYPGNAS---KYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             cccEEEEEcCCCC---CceEccCCCCCHHHHHhhC
Confidence            9999999999843   3578999987 99999884

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.77  E-value=3.3e-19  Score=159.60  Aligned_cols=101  Identities=20%  Similarity=0.305  Sum_probs=89.5

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc------ccceeeeecccchhhhHHHhhCCCCc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ  210 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g------~~~vg~Vdc~e~~~~~~Lc~k~~i~k  210 (658)
                      .|++||.++|+..+.++++++|.||||||++|+++.|.|+++|+.+++      .+.+++|||++++   .+|++++   
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~---   75 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYR---   75 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCC---
Confidence            578999999999888888999999999999999999999999998753      3589999999554   5999999   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                         |++|||+++|++|..   ....|.|.++.++|++|+
T Consensus        76 ---v~~~Ptl~~~~~g~~---~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          76 ---INKYPTLKLFRNGMM---MKREYRGQRSVEALAEFV  108 (108)
T ss_pred             ---CCcCCEEEEEeCCcC---cceecCCCCCHHHHHhhC
Confidence               889999999999863   247899999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=3.5e-19  Score=185.54  Aligned_cols=70  Identities=34%  Similarity=0.583  Sum_probs=67.3

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      .+.+|+||||+++||.+|||+|||+|+++||||||+.+.++|++|.+|||+||||++|+.||+||+++..
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~   72 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ   72 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            4689999999999999999999999999999999999999999999999999999999999999988864

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.73  E-value=1.8e-18  Score=152.10  Aligned_cols=102  Identities=17%  Similarity=0.373  Sum_probs=93.0

Q ss_pred             EEEecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |..+|.++|++.+. ++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|++++      |++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------v~~   71 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK---ELCKKYG------VKS   71 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH---HHHHHTT------CSS
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc---hhhhccC------CCC
Confidence            46899999999995 4999999999999999999999999999999987799999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.|.++.++|.+|++++
T Consensus        72 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   72 VPTIIFFKNGKE----VKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             SSEEEEEETTEE----EEEEESSSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCcE----EEEEECCCCHHHHHHHHHcC
Confidence            999999999975    46899999999999999874

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.73  E-value=4.8e-18  Score=151.75  Aligned_cols=105  Identities=20%  Similarity=0.391  Sum_probs=90.9

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |.+|+.++|+..| +++++++|.||||||++|+++.|.|+++|+.+.+...++.|||+++. ...+|++++      |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~   74 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG   74 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence            6789999999998 66788999999999999999999999999999887899999999621 345999998      889


Q ss_pred             eeEEEEcCCCCCC-CCCcccccCCCCHhHHHHHH
Q 006171          217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       217 yPTl~~f~~g~~~-~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      +||+++|.+|... ......|.|.++.++|++|+
T Consensus        75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence            9999999988610 01357899999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.72  E-value=6e-18  Score=149.34  Aligned_cols=98  Identities=17%  Similarity=0.374  Sum_probs=86.0

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|++||.++|++.+.+.  |+|+||||||++|+++.|.|+++++.+++. +.+++|||++++   .+|++++      |+
T Consensus         2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~~------i~   70 (101)
T cd02994           2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP---GLSGRFF------VT   70 (101)
T ss_pred             ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH---hHHHHcC------Cc
Confidence            47899999999887543  899999999999999999999999988754 689999999554   4899998      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~  250 (658)
                      ++||+++|++|..     ..|.|.++.++|++|+.
T Consensus        71 ~~Pt~~~~~~g~~-----~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          71 ALPTIYHAKDGVF-----RRYQGPRDKEDLISFIE  100 (101)
T ss_pred             ccCEEEEeCCCCE-----EEecCCCCHHHHHHHHh
Confidence            9999999988842     67999999999999985

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.8e-17  Score=179.96  Aligned_cols=223  Identities=14%  Similarity=0.202  Sum_probs=143.0

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|++|+.++|+..| .+.+.+||+||++|||||++++|+|+++|+.+++   ++.|++|||.+..+ ..||++++     
T Consensus        40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef~-----  113 (606)
T KOG1731|consen   40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREFS-----  113 (606)
T ss_pred             CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhcC-----
Confidence            58999999999999 6677999999999999999999999999999975   45999999996543 34999999     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhc---------cCCcceeeccchhhhhhhhh-cCCCcEEE
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL---------KLPRIFYYTKESMGKNFLAK-TGPHKVKV  282 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~---------~lP~~~~it~~~~~~~Fl~~-~~~~~v~v  282 (658)
                       |++||||++|+++.........+.|+-...++.+.+.+.+.         ..|....+++.+.+...-++ .+...-+.
T Consensus       114 -V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvA  192 (606)
T KOG1731|consen  114 -VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVA  192 (606)
T ss_pred             -CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeE
Confidence             88999999999875432334667787777788777765432         34433334332222222111 11122345


Q ss_pred             EEEeCCCCCCcHHHHHHHHhhc--cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh----HHH
Q 006171          283 IFFSKTGERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN----SRL  356 (658)
Q Consensus       283 l~f~~~~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~----~~L  356 (658)
                      ++|....   ..+-...+..+-  ..+....+.  +.....+.+ ++...+|..++|+.+...++. ....+.    +.|
T Consensus       193 iv~e~~~---s~lg~~~~l~~l~~~~v~vr~~~--d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~-~~~~s~~~y~~~I  265 (606)
T KOG1731|consen  193 IVFETEP---SDLGWANLLNDLPSKQVGVRARL--DTQNFPLFG-LKPDNFPLALLFRNGEQQPLW-PSSSSRSAYVKKI  265 (606)
T ss_pred             EEEecCC---cccHHHHHHhhccCCCcceEEEe--cchhccccc-cCCCCchhhhhhcCCcccccc-cccccHHHHHHHH
Confidence            5664322   222233222222  233333332  332334455 777889999999998877653 222233    556


Q ss_pred             HHHHHhh---ccCCCccccC
Q 006171          357 SEVMEQN---KLQELPQLRS  373 (658)
Q Consensus       357 ~~fi~~~---~~~~vP~lts  373 (658)
                      .+++-..   ..|+++..+.
T Consensus       266 ~~~lg~~~~a~~pt~~p~~~  285 (606)
T KOG1731|consen  266 DDLLGDKNEASGPTLHPITA  285 (606)
T ss_pred             HHHhcCccccCCCCcCcccc
Confidence            6665443   4455655553

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.71  E-value=2e-17  Score=150.59  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=87.6

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCC--CC--CChHHHHHHHHHh--hcccceeeeecccchhhhHHHhhCCCC
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYL--CG--QFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIG  209 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~--Ck--~l~P~w~~~A~~l--~g~~~vg~Vdc~e~~~~~~Lc~k~~i~  209 (658)
                      .|..||.+||++.| +++.++++.|+++||++  |+  .++|...++|.++  ++.++|++|||++++   .||++|+  
T Consensus        10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~~--   84 (120)
T cd03065          10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKLG--   84 (120)
T ss_pred             ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHcC--
Confidence            57899999999999 56678888888888864  99  7888888888777  666799999999554   5999999  


Q ss_pred             cccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                          |+++|||++|++|..     ..|.|.++.+.|++|+.+.
T Consensus        85 ----I~~iPTl~lfk~G~~-----v~~~G~~~~~~l~~~l~~~  118 (120)
T cd03065          85 ----LDEEDSIYVFKDDEV-----IEYDGEFAADTLVEFLLDL  118 (120)
T ss_pred             ----CccccEEEEEECCEE-----EEeeCCCCHHHHHHHHHHH
Confidence                889999999999964     4599999999999999865

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.69  E-value=1.4e-17  Score=149.63  Aligned_cols=102  Identities=14%  Similarity=0.316  Sum_probs=87.4

Q ss_pred             eEEEecCCCCCcccc---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhh-CCCCcc
Q 006171          137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER-KPIGQI  211 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k-~~i~k~  211 (658)
                      .|.+++.++|+.++.   +++++||.||+|||+||+++.|.|+++|+.+++. ..+++|||+.+  ...+|.+ ++    
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~----   75 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQ----   75 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcC----
Confidence            478999999999883   5789999999999999999999999999999875 58999999952  1247764 77    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHH
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF  249 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv  249 (658)
                        |+++||+++|.+|..   ....|.|. |+.++|+.|+
T Consensus        76 --v~~~Pti~~f~~~~~---~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          76 --LKSFPTILFFPKNSR---QPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             --CCcCCEEEEEcCCCC---CceeccCCCCCHHHHHhhC
Confidence              889999999998764   35789995 9999999985

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.69  E-value=3.1e-17  Score=144.75  Aligned_cols=100  Identities=23%  Similarity=0.440  Sum_probs=89.5

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |..++.++|++.+ +.+.+++|.||+|||++|+++.|.|.++++.+.+...++.+||+++.   .+|++++      |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~------i~~   72 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ---SLAQQYG------VRG   72 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH---HHHHHCC------CCc
Confidence            6789999999988 56677999999999999999999999999999888899999999554   5899998      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      +||+++|.+|..   ....|.|.++.++|++|+
T Consensus        73 ~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          73 FPTIKVFGAGKN---SPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             cCEEEEECCCCc---ceeecCCCCCHHHHHHHh
Confidence            999999998843   467899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.68  E-value=4.3e-17  Score=143.86  Aligned_cols=100  Identities=18%  Similarity=0.388  Sum_probs=87.4

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |..||.++|++.+ +++++++|.||+|||++|+++.|.|+++++.+++  .+.+++|||+++.    +|.+++      +
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~------~   71 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND----VPSEFV------V   71 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh----hhhhcc------C
Confidence            6789999999998 5668999999999999999999999999999987  3589999999552    677777      7


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      .++||+++|++|..  .....|.|.++.++|++|+
T Consensus        72 ~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          72 DGFPTILFFPAGDK--SNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             CCCCEEEEEcCCCc--CCceEccCCcCHHHHHhhC
Confidence            89999999999873  2357899999999999985

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=2e-17  Score=179.09  Aligned_cols=69  Identities=28%  Similarity=0.423  Sum_probs=64.0

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.   +.++|++|++||++|+||++|+.||+||+.+.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~   73 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL   73 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence            4699999999999999999999999999999999862   56789999999999999999999999998753

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.67  E-value=4e-17  Score=143.81  Aligned_cols=98  Identities=17%  Similarity=0.413  Sum_probs=86.2

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |+.||.++|+..+.++ +++|.|||+||++|+.+.|.|+++++.+++   .+.+++|||+.+.   .+|++++      |
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v   71 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR---ELCSEFQ------V   71 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---hhHhhcC------C
Confidence            5789999999999654 599999999999999999999999999987   5699999999544   5899998      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      .++||+++|++|..    ...|.|.++.++|.+|+
T Consensus        72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence            89999999988854    46899999999999884

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=4e-17  Score=176.82  Aligned_cols=69  Identities=20%  Similarity=0.418  Sum_probs=64.3

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+  .+.++|++|++||++|+||++|+.||+||+++.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~   73 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence            469999999999999999999999999999999986  467889999999999999999999999998753

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=5.7e-17  Score=177.09  Aligned_cols=104  Identities=15%  Similarity=0.338  Sum_probs=91.1

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc--cceeeeecccchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~--~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|.+|..+||+..+ +..+-+||+|||||||||++++|+|+++|+.+++.  +.||++|.+.|..     ....     
T Consensus       366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-----~~~~-----  435 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-----PSLK-----  435 (493)
T ss_pred             CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-----cccc-----
Confidence            358999999999999 78999999999999999999999999999999885  4899999996542     1123     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       |.+||||++|+.|.+  ..+..|+|+|+.+++..|+.+.
T Consensus       436 -~~~fPTI~~~pag~k--~~pv~y~g~R~le~~~~fi~~~  472 (493)
T KOG0190|consen  436 -VDGFPTILFFPAGHK--SNPVIYNGDRTLEDLKKFIKKS  472 (493)
T ss_pred             -ccccceEEEecCCCC--CCCcccCCCcchHHHHhhhccC
Confidence             779999999999986  4678999999999999998776

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.67  E-value=5.1e-17  Score=146.47  Aligned_cols=100  Identities=21%  Similarity=0.355  Sum_probs=86.4

Q ss_pred             EEecCCCCCccc-c--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccce
Q 006171          139 NVVTSEDFPSIF-H--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       139 ~~Lt~~nF~~~v-~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      ..+|.++|++.+ .  .+++|+|.||||||++|+.+.|.|+++++++++. +.+++|||+.+   ..+|++++      |
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~---~~l~~~~~------V   77 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE---RRLARKLG------A   77 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc---HHHHHHcC------C
Confidence            567888998655 3  6799999999999999999999999999999874 68999999954   45899999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      +++||+++|++|..    ...+.|.++.+.|++|+.+
T Consensus        78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence            89999999998854    4566899999999999865

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.65  E-value=5.6e-17  Score=163.17  Aligned_cols=104  Identities=21%  Similarity=0.448  Sum_probs=91.3

Q ss_pred             ceEEEecCCCCCcccc-----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCc
Q 006171          136 HAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ  210 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~-----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k  210 (658)
                      +.|++||.+||++.+.     .+++|+|+||||||+||+++.|.|+++|+++++.+++++|||+++   ..+|++++   
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~---~~l~~~~~---  103 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA---LNLAKRFA---  103 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc---HHHHHHcC---
Confidence            4689999999999883     258999999999999999999999999999998889999999955   45999999   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |++|||+++|.+|..    ...+.|.++.++|.+|+.+.
T Consensus       104 ---I~~~PTl~~f~~G~~----v~~~~G~~s~e~L~~fi~~~  138 (224)
T PTZ00443        104 ---IKGYPTLLLFDKGKM----YQYEGGDRSTEKLAAFALGD  138 (224)
T ss_pred             ---CCcCCEEEEEECCEE----EEeeCCCCCHHHHHHHHHHH
Confidence               889999999998854    33446889999999999776

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.63  E-value=1.4e-16  Score=174.30  Aligned_cols=68  Identities=28%  Similarity=0.488  Sum_probs=64.1

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ +.++|++|++||++|+||.+|+.||+||..+.
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~   94 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL   94 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence            579999999999999999999999999999999986 46899999999999999999999999998753

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2e-16  Score=146.41  Aligned_cols=103  Identities=18%  Similarity=0.300  Sum_probs=93.9

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .+..++..+|++.| +++.|++|+|||+|||+|+.+.|..++++.+++|.+++++||.+++   .+|+.+|+      |.
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~---~ela~~Y~------I~  114 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH---PELAEDYE------IS  114 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc---cchHhhcc------ee
Confidence            45778889999988 8999999999999999999999999999999999999999999955   45999999      89


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .+||+++|++|.+    ...+.|..+.+.|.+|+.+.
T Consensus       115 avPtvlvfknGe~----~d~~vG~~~~~~l~~~i~k~  147 (150)
T KOG0910|consen  115 AVPTVLVFKNGEK----VDRFVGAVPKEQLRSLIKKF  147 (150)
T ss_pred             eeeEEEEEECCEE----eeeecccCCHHHHHHHHHHH
Confidence            9999999999976    35778999999999999887

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=2e-16  Score=172.53  Aligned_cols=67  Identities=24%  Similarity=0.409  Sum_probs=62.8

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.   +.++|++|++||++|+||++|+.||+||+.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~   77 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL   77 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence            4699999999999999999999999999999999873   568899999999999999999999999864

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=2.4e-16  Score=170.96  Aligned_cols=69  Identities=32%  Similarity=0.534  Sum_probs=64.0

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+   .+.++|++|++||++|+||.+|+.||+||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence            369999999999999999999999999999999986   356789999999999999999999999998764

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.62  E-value=6.8e-16  Score=136.53  Aligned_cols=84  Identities=13%  Similarity=0.275  Sum_probs=74.4

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-cchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCC
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS  229 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~  229 (658)
                      ..+++++|.|||+||++|+.+.|.|+++++.+.+ ..+++||++ +++   .+|++++      |+++||+++|.+| . 
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~---~l~~~~~------V~~~PT~~lf~~g-~-   83 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKP---SLLSRYG------VVGFPTILLFNST-P-   83 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCH---HHHHhcC------CeecCEEEEEcCC-c-
Confidence            3689999999999999999999999999999975 578889987 454   4899998      8999999999988 3 


Q ss_pred             CCCcccccCCCCHhHHHHHH
Q 006171          230 SDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       230 ~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                         ...|.|.++.++|++|+
T Consensus        84 ---~~~~~G~~~~~~l~~f~  100 (100)
T cd02999          84 ---RVRYNGTRTLDSLAAFY  100 (100)
T ss_pred             ---eeEecCCCCHHHHHhhC
Confidence               47899999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=3.1e-16  Score=169.95  Aligned_cols=69  Identities=30%  Similarity=0.582  Sum_probs=64.1

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+  .+.++|++|++||++|+||++|+.||+||+++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~   73 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP   73 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence            469999999999999999999999999999999986  466789999999999999999999999998753

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.61  E-value=5.6e-16  Score=135.32  Aligned_cols=93  Identities=14%  Similarity=0.270  Sum_probs=81.3

Q ss_pred             CCCCccc-cC-CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171          144 EDFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       144 ~nF~~~v-~~-~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      ++|++.| ++ +++++|.||||||++|+++.|.|+++++.+.+...+++|||+++   ..+|++++      |.++||++
T Consensus         1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~l~~~~~------i~~~Pt~~   71 (96)
T cd02956           1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ---PQIAQQFG------VQALPTVY   71 (96)
T ss_pred             CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC---HHHHHHcC------CCCCCEEE
Confidence            4677778 44 68999999999999999999999999999988778999999954   45999999      88999999


Q ss_pred             EcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          222 AFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      +|.+|..    ...|.|.++.+.|.+|+
T Consensus        72 ~~~~g~~----~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          72 LFAAGQP----VDGFQGAQPEEQLRQML   95 (96)
T ss_pred             EEeCCEE----eeeecCCCCHHHHHHHh
Confidence            9997754    45789999999999886

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.61  E-value=5.6e-16  Score=136.80  Aligned_cols=101  Identities=21%  Similarity=0.347  Sum_probs=88.2

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      |..|+..+|+..+.++++++|.|||+||++|+++.|.++++++.++  +.+.++.|||++. ....+|++++      |+
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~   74 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK   74 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence            6789999999999777899999999999999999999999999997  5568999999952 1345899998      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      ++||+++|++|..    ...|.|..+.+.|++|+
T Consensus        75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM  104 (104)
T ss_pred             cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence            9999999998864    46899999999999884

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.61  E-value=8.3e-16  Score=139.30  Aligned_cols=103  Identities=24%  Similarity=0.420  Sum_probs=86.0

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      |++|+.++|++.| +++++++|.||||||++|+.+.|.|+++++.+++   .+.++.|||+.+. ...+|++++      
T Consensus         3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~------   75 (114)
T cd02992           3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFG------   75 (114)
T ss_pred             eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCC------
Confidence            6889999999998 4567999999999999999999999999999864   4689999997432 245899998      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHH
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTD  247 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~  247 (658)
                      |+++||+++|++|..+.....+|.|+ |..+.+..
T Consensus        76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02992          76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE  110 (114)
T ss_pred             CCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence            88999999999997655556788887 77666643

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.61  E-value=8.9e-16  Score=135.50  Aligned_cols=101  Identities=20%  Similarity=0.383  Sum_probs=87.4

Q ss_pred             EEEecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |..||.++|+..+. ++++++|.|||+||++|+++.|.|+++++.++  +.+.++.+||+.+  ...+|++++      |
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~------i   73 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYG------V   73 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCC------C
Confidence            57899999999884 56699999999999999999999999999997  3468999999951  345999998      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      +++||+++|.+|..   ....|.|.++.+.|.+|+
T Consensus        74 ~~~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          74 SGFPTLKFFPKGST---EPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             CCcCEEEEEeCCCC---CccccCCccCHHHHHhhC
Confidence            89999999988753   357899999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.61  E-value=9.1e-16  Score=134.71  Aligned_cols=99  Identities=23%  Similarity=0.395  Sum_probs=88.5

Q ss_pred             ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccchhhhHHHhhCCCCcccceeeee
Q 006171          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (658)
Q Consensus       141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yP  218 (658)
                      ||.++|++.+.++++++|.||++||++|+++.|.|+++|+.+++  .+.++.+||+++   ..+|++++      |+++|
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~------i~~~P   71 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFG------VSGFP   71 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCC------CCcCC
Confidence            56788998888899999999999999999999999999999987  469999999954   45999999      88999


Q ss_pred             EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+.+|.+|..    ...|.|.++.+.|..|+.++
T Consensus        72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence            9999998863    47899999999999999764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=5e-16  Score=168.60  Aligned_cols=69  Identities=29%  Similarity=0.508  Sum_probs=64.2

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+  .+.++|++|++||++|+||++|+.||+||.++.
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI   74 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence            469999999999999999999999999999999985  466889999999999999999999999998653

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=5.6e-16  Score=168.57  Aligned_cols=69  Identities=32%  Similarity=0.551  Sum_probs=64.4

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~   73 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA   73 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence            369999999999999999999999999999999986  467889999999999999999999999998754

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=6.5e-16  Score=167.55  Aligned_cols=69  Identities=29%  Similarity=0.583  Sum_probs=63.7

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+|+++||||+|+.    +.++|++|++||++|+||.+|+.||+||..+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~   75 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE   75 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence            4699999999999999999999999999999999863    45789999999999999999999999997653

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=6.5e-16  Score=168.05  Aligned_cols=69  Identities=25%  Similarity=0.467  Sum_probs=64.5

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+  .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~   74 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM   74 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence            469999999999999999999999999999999986  467889999999999999999999999998753

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=7.6e-16  Score=166.60  Aligned_cols=68  Identities=26%  Similarity=0.435  Sum_probs=63.5

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .|||++|||+++|+.+|||+|||+|+++||||+|+.   +.++|++|++||++|+||.+|+.||+||..+.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~   73 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF   73 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence            699999999999999999999999999999999863   55789999999999999999999999998753

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2e-16  Score=167.30  Aligned_cols=68  Identities=26%  Similarity=0.437  Sum_probs=63.2

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ...||+||||.++|+..+||++||+||++||||+||.    +.++|+.|+.||+|||||..|+.||.+.++-
T Consensus         7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqi   78 (508)
T KOG0717|consen    7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQI   78 (508)
T ss_pred             hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHH
Confidence            5689999999999999999999999999999999883    6778999999999999999999999987653

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1e-15  Score=166.34  Aligned_cols=66  Identities=29%  Similarity=0.430  Sum_probs=62.5

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      .|||+||||+++|+.+|||+|||+||++||||+|+.  +.++|++|++||++|+||.+|+.||+||.+
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            699999999999999999999999999999999874  567899999999999999999999999975

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=9.3e-16  Score=161.16  Aligned_cols=68  Identities=29%  Similarity=0.536  Sum_probs=63.7

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|||+||||+++||.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||+||.++
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            369999999999999999999999999999999985  46788999999999999999999999999875

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.58  E-value=1.2e-15  Score=167.75  Aligned_cols=105  Identities=11%  Similarity=0.287  Sum_probs=89.7

Q ss_pred             eEEEecCCCCCcccc---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|++||.+||+++|.   .+++|||.||||||++|+.+.|.|+++|+++++. +.|++|||+.+.. ..++++++     
T Consensus       352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-~~~~~~~~-----  425 (463)
T TIGR00424       352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-EFAKQELQ-----  425 (463)
T ss_pred             CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-HHHHHHcC-----
Confidence            589999999999984   7889999999999999999999999999999875 5899999995431 11346788     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCccccc-CCCCHhHHHHHHHH
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT  251 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~-G~rs~~~Lv~fv~k  251 (658)
                       |++||||++|++|..   .+..|. |.|++++|+.|++.
T Consensus       426 -I~~~PTii~Fk~g~~---~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       426 -LGSFPTILFFPKHSS---RPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             -CCccceEEEEECCCC---CceeCCCCCCCHHHHHHHHHh
Confidence             889999999999853   357897 58999999999864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.1e-15  Score=166.36  Aligned_cols=69  Identities=26%  Similarity=0.516  Sum_probs=64.3

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+++|+.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||+||..+.
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~   72 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF   72 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence            469999999999999999999999999999999986  467889999999999999999999999998653

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1e-15  Score=166.29  Aligned_cols=69  Identities=29%  Similarity=0.508  Sum_probs=64.3

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   73 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP   73 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence            369999999999999999999999999999999885  467899999999999999999999999998754

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1e-15  Score=152.92  Aligned_cols=70  Identities=30%  Similarity=0.501  Sum_probs=65.0

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      ..|+|+|||++++|+.++||||||+|+++||||+++.   +.++|++||+||++|+||.+|..||.||+.+..
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~  102 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK  102 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence            4579999999999999999999999999999998763   788999999999999999999999999988754

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.1e-15  Score=166.56  Aligned_cols=69  Identities=28%  Similarity=0.536  Sum_probs=63.8

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.   +.++|++|++||++|+||.+|+.||+||.++.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   75 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF   75 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence            3699999999999999999999999999999999873   56789999999999999999999999998754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.1e-15  Score=165.61  Aligned_cols=69  Identities=29%  Similarity=0.487  Sum_probs=64.1

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.   +.++|++|++||++|+||.+|+.||+||+++.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~   74 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL   74 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence            4699999999999999999999999999999999873   56789999999999999999999999998754

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.3e-15  Score=165.83  Aligned_cols=69  Identities=28%  Similarity=0.542  Sum_probs=63.9

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+++|+.+|||+|||+|+++||||+|+.   +.++|++|++||++|+||.+|+.||+||+++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~   74 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF   74 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence            3699999999999999999999999999999999863   56789999999999999999999999998753

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=1.4e-15  Score=165.04  Aligned_cols=69  Identities=25%  Similarity=0.450  Sum_probs=63.8

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+.   +.++|++|++||++|+||.+|+.||+||.++.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~   74 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV   74 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence            4699999999999999999999999999999999863   45689999999999999999999999998753

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.57  E-value=4.9e-15  Score=131.69  Aligned_cols=94  Identities=16%  Similarity=0.396  Sum_probs=79.8

Q ss_pred             CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      ++|+.. ..+++++|.|||+||++|+++.|.|+++++.+++.   +.++.+||+++   ..+|++++      |+++||+
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~------I~~~Pt~   76 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY---SSIASEFG------VRGYPTI   76 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC---HhHHhhcC------CccccEE
Confidence            678864 45679999999999999999999999999999642   58899999954   35899998      8899999


Q ss_pred             EEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++|.++.     ...|.|.++.+.|.+|+++.
T Consensus        77 ~l~~~~~-----~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          77 KLLKGDL-----AYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             EEEcCCC-----ceeecCCCCHHHHHHHHHhh
Confidence            9997663     26689999999999998763

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.57  E-value=3.5e-15  Score=133.58  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=90.6

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..++.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+.++   .++++++      |+
T Consensus         4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~   74 (109)
T PRK09381          4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYG------IR   74 (109)
T ss_pred             cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh---hHHHhCC------CC
Confidence            47889999999876 67889999999999999999999999999999887899999999554   4888888      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...+.|..+.+.|..|+...
T Consensus        75 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~  107 (109)
T PRK09381         75 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  107 (109)
T ss_pred             cCCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence            9999999998854    35678999999999998775

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=1.6e-15  Score=165.56  Aligned_cols=67  Identities=31%  Similarity=0.548  Sum_probs=62.8

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      .|||+||||+++|+.+|||+|||+||++||||+|+.   +.++|++|++||++|+||.+|+.||+||.++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            389999999999999999999999999999999873   5678999999999999999999999999865

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.57  E-value=1.7e-15  Score=122.65  Aligned_cols=60  Identities=35%  Similarity=0.697  Sum_probs=56.7

Q ss_pred             CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCChhhhhccc
Q 006171           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD   97 (658)
Q Consensus        38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~----~~f~~i~~Aye~L~d~~~R~~YD   97 (658)
                      |||+||||+++++.++||++|+++++++|||+++...    +.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987544    78999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4e-15  Score=144.04  Aligned_cols=69  Identities=29%  Similarity=0.481  Sum_probs=64.0

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .-|||+||||+++++.+|||+|||+|++++||||++   +.++.|..|++||+.|+|+..|++|..||..+.
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            669999999999999999999999999999999985   456679999999999999999999999998764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.1e-15  Score=152.37  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=94.2

Q ss_pred             eEEEecCCCCCccc--cC-CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIF--HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v--~~-~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..+|..||+..|  .+ ..|+||.||||||++|+++.|..++++.+++|.+.+++|||++++   .++.+||      
T Consensus        24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p---~vAaqfg------   94 (304)
T COG3118          24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP---MVAAQFG------   94 (304)
T ss_pred             cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch---hHHHHhC------
Confidence            47899999999988  34 569999999999999999999999999999999999999999554   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |++.||+++|.+|..    ...|.|....+.|..|+.+.
T Consensus        95 iqsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~  129 (304)
T COG3118          95 VQSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV  129 (304)
T ss_pred             cCcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence            999999999999974    67889999999999999988

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=2.6e-15  Score=164.15  Aligned_cols=68  Identities=25%  Similarity=0.504  Sum_probs=63.5

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .|||+||||+++|+.+|||+|||+|+++||||+|+.   +.++|++|++||++|+||.+|+.||+||..+.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~   73 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV   73 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence            699999999999999999999999999999999863   46789999999999999999999999998754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=2.5e-15  Score=163.86  Aligned_cols=69  Identities=23%  Similarity=0.468  Sum_probs=63.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccc----cCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDV----YGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~----~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+|+++||||+|+   .+.++|++|++||++|+||.+|+.||+    ||..+.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~   83 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF   83 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence            469999999999999999999999999999999986   356789999999999999999999999    987653

>PLN02309 5'-adenylylsulfate reductase

Probab=99.55  E-value=3e-15  Score=164.60  Aligned_cols=104  Identities=14%  Similarity=0.398  Sum_probs=90.3

Q ss_pred             eEEEecCCCCCccc---cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc-cchhhhHHHh-hCCCCc
Q 006171          137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKPIGQ  210 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v---~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~-e~~~~~~Lc~-k~~i~k  210 (658)
                      .|+.|+.+||++++   +.+++|||.||||||++|+++.|.|+++|+.+.+. +.|++|||+ ++.   .+|. +++   
T Consensus       346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~---  419 (457)
T PLN02309        346 NVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQ---  419 (457)
T ss_pred             CcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCC---
Confidence            58999999999987   47899999999999999999999999999999876 699999999 543   3776 577   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccC-CCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G-~rs~~~Lv~fv~k~  252 (658)
                         |++||||++|++|..   .+..|.| .|++++|+.|++..
T Consensus       420 ---I~~~PTil~f~~g~~---~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        420 ---LGSFPTILLFPKNSS---RPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             ---CceeeEEEEEeCCCC---CeeecCCCCcCHHHHHHHHHHh
Confidence               889999999998864   3578985 79999999999753

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.55  E-value=3.1e-15  Score=130.02  Aligned_cols=98  Identities=22%  Similarity=0.443  Sum_probs=85.8

Q ss_pred             EecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHh--hcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       140 ~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l--~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      .||.++|.+.+.+.++++|.||++||++|+++.|.|+++++.+  .+.+.++.|||+++   ..+|++++      |+++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~------i~~~   72 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN---NDLCSEYG------VRGY   72 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch---HHHHHhCC------CCCC
Confidence            4778889989977779999999999999999999999999999  46679999999953   45999999      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      ||+++|.++..   ....|.|.++++.|.+|+
T Consensus        73 Pt~~~~~~~~~---~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          73 PTIKLFPNGSK---EPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CEEEEEcCCCc---ccccCCCCcCHHHHHhhC
Confidence            99999998832   368899999999999884

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.55  E-value=8.8e-14  Score=140.15  Aligned_cols=187  Identities=11%  Similarity=0.098  Sum_probs=124.0

Q ss_pred             CCcEEEEEec---cCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCC
Q 006171          153 SKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK  228 (658)
Q Consensus       153 ~~~~lV~FYa---pwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~  228 (658)
                      +...++.|++   +||++|+.+.|.++++++.+.+. +.+..||.+++   ..+|++++      |.++||+++|.+|..
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~---~~l~~~~~------V~~~Pt~~~f~~g~~   89 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED---KEEAEKYG------VERVPTTIILEEGKD   89 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc---HHHHHHcC------CCccCEEEEEeCCee
Confidence            3455777999   99999999999999999988532 24555555544   45999999      889999999999864


Q ss_pred             CCCCcccccCCCCHhHHHHHHHHhhccCC-cceeeccchhhhhhhhhcCCCcEEEEEE-eCCC-CC--CcHHHHHHHHhh
Q 006171          229 SSDCMTRFEGELSVDAVTDWFATAILKLP-RIFYYTKESMGKNFLAKTGPHKVKVIFF-SKTG-ER--ASPFVRQISRNY  303 (658)
Q Consensus       229 ~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP-~~~~it~~~~~~~Fl~~~~~~~v~vl~f-~~~~-~~--~~~~~~~~A~~~  303 (658)
                         ....|.|..+.+.+.+|+..... +. ....++... .+.+. .. ++.+.|+.| .+.| .|  ..+.+..++..+
T Consensus        90 ---~~~~~~G~~~~~~l~~~i~~~~~-~~~~~~~L~~~~-~~~l~-~~-~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~  162 (215)
T TIGR02187        90 ---GGIRYTGIPAGYEFAALIEDIVR-VSQGEPGLSEKT-VELLQ-SL-DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN  162 (215)
T ss_pred             ---eEEEEeecCCHHHHHHHHHHHHH-hcCCCCCCCHHH-HHHHH-hc-CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc
Confidence               22478999999999999876621 21 112232221 22222 22 233445545 3322 22  234455555543


Q ss_pred             ccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          304 WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       304 ~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                       ..+.+..+...  ..++++++|+|.+.||+++++++.    .+.|..+.+.|.+|+..
T Consensus       163 -~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       163 -DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             -CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence             34555555422  357899999999999999987542    27788788889888864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=3.7e-15  Score=161.99  Aligned_cols=69  Identities=30%  Similarity=0.554  Sum_probs=63.8

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.   +.++|++|++||++|+||.+|+.||+||..+.
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~   74 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF   74 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence            4699999999999999999999999999999999863   45789999999999999999999999998753

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=6.8e-15  Score=159.37  Aligned_cols=68  Identities=31%  Similarity=0.557  Sum_probs=63.2

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .|||+||||+++|+.+|||+|||+|+++||||+|+.    +.++|++|++||++|+||.+|+.||+||+.+.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~   74 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF   74 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence            599999999999999999999999999999999863    45789999999999999999999999998653

>PHA02278 thioredoxin-like protein

Probab=99.53  E-value=4.7e-15  Score=131.78  Aligned_cols=96  Identities=9%  Similarity=0.118  Sum_probs=79.9

Q ss_pred             CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEE
Q 006171          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       143 ~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      .++|+..+.++++++|.|||||||+|+.++|.++++++++.+...+.+||++.++. ...++++++      |++.||++
T Consensus         4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i   77 (103)
T PHA02278          4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLI   77 (103)
T ss_pred             HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEE
Confidence            35677777789999999999999999999999999998876666899999995421 134899998      89999999


Q ss_pred             EcCCCCCCCCCcccccCCCCHhHHHHH
Q 006171          222 AFPPGCKSSDCMTRFEGELSVDAVTDW  248 (658)
Q Consensus       222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~f  248 (658)
                      +|++|..    .....|..+.+.|.++
T Consensus        78 ~fk~G~~----v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         78 GYKDGQL----VKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EEECCEE----EEEEeCCCCHHHHHhh
Confidence            9999964    4567898888888775

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=6.2e-15  Score=160.03  Aligned_cols=68  Identities=26%  Similarity=0.462  Sum_probs=63.4

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .|||+||||+++||.+|||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||+||.++.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   72 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF   72 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence            59999999999999999999999999999999885  356789999999999999999999999998653

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.52  E-value=8.4e-15  Score=158.31  Aligned_cols=67  Identities=31%  Similarity=0.566  Sum_probs=62.9

Q ss_pred             CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      |||++|||+++|+.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||+||..+.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~   69 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF   69 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence            7999999999999999999999999999999985  466889999999999999999999999998764

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=8.5e-15  Score=152.77  Aligned_cols=68  Identities=28%  Similarity=0.601  Sum_probs=63.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|||+||||+++|+.+|||+||++|+++||||.|.  .+.++|++|.+|||+|+|+++|+.||.+|..+
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            449999999999999999999999999999999766  57788999999999999999999999999875

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=5.8e-15  Score=156.29  Aligned_cols=70  Identities=29%  Similarity=0.475  Sum_probs=64.2

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~------~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      ..|||.+|+|+++|+.+|||+|||++++.||||+..      .+++.|+.|.+|||||+||.+|+.||.||++|..
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            348999999999999999999999999999999765      2456799999999999999999999999999875

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.51  E-value=9.3e-15  Score=167.22  Aligned_cols=70  Identities=26%  Similarity=0.409  Sum_probs=65.1

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      ..+||+||||+++|+..+||+|||+||++||||+|+  .+.++|++|++||++|+||.+|+.||+||..+..
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            579999999999999999999999999999999987  3567899999999999999999999999988743

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=1.1e-14  Score=158.34  Aligned_cols=69  Identities=26%  Similarity=0.509  Sum_probs=64.0

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||.||..+.
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~   72 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV   72 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence            359999999999999999999999999999999986  467889999999999999999999999998653

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=1e-14  Score=158.46  Aligned_cols=67  Identities=27%  Similarity=0.522  Sum_probs=63.2

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      .|||++|||+++|+.++||+|||+|+++||||+|+.  +.++|++|++||++|+||.+|+.||+||.++
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            599999999999999999999999999999999863  6788999999999999999999999999865

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=1.1e-14  Score=158.87  Aligned_cols=68  Identities=25%  Similarity=0.510  Sum_probs=63.4

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|||++|||+++|+.+|||+|||+|+++||||+|+   .+.++|++|++||++|+||.+|+.||+||..+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            469999999999999999999999999999999986   35678999999999999999999999999865

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.50  E-value=1.6e-14  Score=128.45  Aligned_cols=96  Identities=11%  Similarity=0.047  Sum_probs=78.7

Q ss_pred             CCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       143 ~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      .++|++.|.  .+++++|+|||+||++|+.+.|.++++++++ +.+.++.||++++.....+|++++      |+++||+
T Consensus         3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~   75 (103)
T cd02985           3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF   75 (103)
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence            456777883  3899999999999999999999999999999 556899999997654456999998      8999999


Q ss_pred             EEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~  250 (658)
                      ++|++|..    ...+.|.. .+.|.+-+.
T Consensus        76 ~~~~~G~~----v~~~~G~~-~~~l~~~~~  100 (103)
T cd02985          76 LFYKDGEK----IHEEEGIG-PDELIGDVL  100 (103)
T ss_pred             EEEeCCeE----EEEEeCCC-HHHHHHHHH
Confidence            99998864    46778844 566665543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.2e-14  Score=150.42  Aligned_cols=69  Identities=25%  Similarity=0.396  Sum_probs=64.5

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||++|||+.+|+..+|++|||+.+++||||+||+   +.++|+.+.+||+||+|+..|..||.+|..+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~   75 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS   75 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence            4699999999999999999999999999999999984   67789999999999999999999999997763

>PRK10996 thioredoxin 2; Provisional

Probab=99.49  E-value=1.6e-14  Score=135.62  Aligned_cols=103  Identities=20%  Similarity=0.344  Sum_probs=91.7

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .++.++.++|+..++++++++|.||++||++|+++.|.++++++++.+.+.+++||+++++   .++++++      |++
T Consensus        36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~------V~~  106 (139)
T PRK10996         36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER---ELSARFR------IRS  106 (139)
T ss_pred             CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH---HHHHhcC------CCc
Confidence            3577899999998888999999999999999999999999999999887899999999554   5899998      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...+.|..+.+.|.+|+.+.
T Consensus       107 ~Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        107 IPTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             cCEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence            999999998854    46778999999999999765

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.48  E-value=2.1e-14  Score=152.06  Aligned_cols=66  Identities=24%  Similarity=0.471  Sum_probs=62.1

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      .|||++|||+++|+.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||.||..
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~   71 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH   71 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence            59999999999999999999999999999999885  4678899999999999999999999999854

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=3.4e-14  Score=138.63  Aligned_cols=68  Identities=24%  Similarity=0.450  Sum_probs=63.2

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC-----ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~-----~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|+|+||||.++|+..+||+|||+|+++||||+++     .+.++|++++.||.+|+|.++|+.||.-|.-.
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            669999999999999999999999999999999985     36678999999999999999999999988654

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.45  E-value=2.3e-14  Score=128.84  Aligned_cols=76  Identities=14%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171          144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       144 ~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      ++|+..+.  ++++++|.|||+||++|+.+.|.++++|.++.+.+.+++||+++++   .|+++++      |++.||++
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~---~la~~~~------V~~iPTf~   73 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP---DFNKMYE------LYDPPTVM   73 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH---HHHHHcC------CCCCCEEE
Confidence            45666673  6789999999999999999999999999999888899999999665   5999999      88999999


Q ss_pred             EcCCCCC
Q 006171          222 AFPPGCK  228 (658)
Q Consensus       222 ~f~~g~~  228 (658)
                      +|++|..
T Consensus        74 ~fk~G~~   80 (114)
T cd02954          74 FFFRNKH   80 (114)
T ss_pred             EEECCEE
Confidence            9999864

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR01068 thioredoxin thioredoxin

Probab=99.45  E-value=8.3e-14  Score=121.71  Aligned_cols=98  Identities=19%  Similarity=0.308  Sum_probs=84.4

Q ss_pred             cCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          142 TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       142 t~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      +.++|.+.+. .+++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+++.   .++++++      |.++||+
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~~P~~   72 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP---DIAAKYG------IRSIPTL   72 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcC------CCcCCEE
Confidence            5567777774 4669999999999999999999999999999877899999999554   4899998      8899999


Q ss_pred             EEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++|++|..    ...+.|.++.+.|.+|+.+.
T Consensus        73 ~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        73 LLFKNGKE----VDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             EEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence            99988754    35678999999999999765

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.44  E-value=6.6e-14  Score=124.15  Aligned_cols=96  Identities=13%  Similarity=0.178  Sum_probs=79.1

Q ss_pred             ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccceeeeeE
Q 006171          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      -|.++|+..++++++++|.|||+||++|+.+.|.++++++.+++. +.++.||++ +.   .++++++      |+++||
T Consensus         5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~---~~~~~~~------v~~~Pt   74 (102)
T cd02948           5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI---DTLKRYR------GKCEPT   74 (102)
T ss_pred             cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH---HHHHHcC------CCcCcE
Confidence            456788888888999999999999999999999999999999754 589999999 32   3889988      889999


Q ss_pred             EEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       220 l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      +++|++|..    .....| .+.+.|.+++.+
T Consensus        75 ~~~~~~g~~----~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          75 FLFYKNGEL----VAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             EEEEECCEE----EEEEec-CChHHHHHHHhh
Confidence            999998864    234456 477888777643

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PTZ00102 disulphide isomerase; Provisional

Probab=99.44  E-value=1.2e-13  Score=155.19  Aligned_cols=106  Identities=14%  Similarity=0.244  Sum_probs=93.1

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..|+.++|+..| ++++++||.||||||+||+.+.|.|+++|+.+++  .+.++.+||+.+..   +|++++     
T Consensus       357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~-----  428 (477)
T PTZ00102        357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFS-----  428 (477)
T ss_pred             CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCC-----
Confidence            358899999999987 7889999999999999999999999999999875  35899999996543   788888     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                       |+++||+++|++|..   .+..|.|.++.++|.+|+.+..
T Consensus       429 -v~~~Pt~~~~~~~~~---~~~~~~G~~~~~~l~~~i~~~~  465 (477)
T PTZ00102        429 -WSAFPTILFVKAGER---TPIPYEGERTVEGFKEFVNKHA  465 (477)
T ss_pred             -CcccCeEEEEECCCc---ceeEecCcCCHHHHHHHHHHcC
Confidence             889999999998864   3467999999999999999873

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.6e-13  Score=150.02  Aligned_cols=105  Identities=23%  Similarity=0.471  Sum_probs=93.4

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..++..+|+..+ ..+..|||.||+|||+||+.++|+|+++|..++  +.+.++++||+   ....+|.+++      
T Consensus       145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~------  215 (383)
T KOG0191|consen  145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLE------  215 (383)
T ss_pred             ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhc------
Confidence            48999999999988 788999999999999999999999999999997  45599999999   5556999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      |++|||+++|++|..   ....|.|.|+.++|+.|+.+..
T Consensus       216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~  252 (383)
T KOG0191|consen  216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKE  252 (383)
T ss_pred             ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhc
Confidence            889999999999864   2467789999999999998873

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.43  E-value=9.4e-12  Score=121.23  Aligned_cols=148  Identities=18%  Similarity=0.342  Sum_probs=115.5

Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC-CChHHHHHHHHhhccCCCccc
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQELPQL  371 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~-~~~~~L~~fi~~~~~~~vP~l  371 (658)
                      ...+..+|..+++.+.|+.+.     +.+++++++++. |+|++|++++.++..|.|. ++.+.|.+||..+++|+++++
T Consensus         9 ~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~   82 (184)
T PF13848_consen    9 FEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL   82 (184)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred             HHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence            344566888998888888885     466999999987 9999999988889999998 899999999999999999999


Q ss_pred             cCcchhhhcccccCCcCCCCCCcccEEEEEEcCC-ChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcE
Q 006171          372 RSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRL  450 (658)
Q Consensus       372 ts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~-~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v  450 (658)
                      +..+... ++..      ++    ..+++++.+. ....+..++.++++++                      .+++ ++
T Consensus        83 t~~n~~~-~~~~------~~----~~~~~~~~~~~~~~~~~~~~~l~~~a~----------------------~~~~-~~  128 (184)
T PF13848_consen   83 TPENFEK-LFSS------PK----PPVLILFDNKDNESTEAFKKELQDIAK----------------------KFKG-KI  128 (184)
T ss_dssp             STTHHHH-HHST------SS----EEEEEEEETTTHHHHHHHHHHHHHHHH----------------------CTTT-TS
T ss_pred             chhhHHH-HhcC------CC----ceEEEEEEcCCchhHHHHHHHHHHHHH----------------------hcCC-eE
Confidence            9988654 4421      21    2456666553 4456777777877777                      5554 49


Q ss_pred             EEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEE
Q 006171          451 TFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIV  492 (658)
Q Consensus       451 ~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~  492 (658)
                      .|+|+|++..+++++.|...            ..++|.++|+
T Consensus       129 ~f~~~d~~~~~~~~~~~~i~------------~~~~P~~vi~  158 (184)
T PF13848_consen  129 NFVYVDADDFPRLLKYFGID------------EDDLPALVIF  158 (184)
T ss_dssp             EEEEEETTTTHHHHHHTTTT------------TSSSSEEEEE
T ss_pred             EEEEeehHHhHHHHHHcCCC------------CccCCEEEEE
Confidence            99999999889999977322            2356999999

...

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.43  E-value=1.6e-13  Score=109.38  Aligned_cols=55  Identities=31%  Similarity=0.585  Sum_probs=51.1

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL   91 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~   91 (658)
                      .|||++|||+++++.++||++|+++++++|||++++    +.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999874    5678999999999999985

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.43  E-value=1.4e-13  Score=123.07  Aligned_cols=96  Identities=15%  Similarity=0.099  Sum_probs=84.9

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccC--CCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapw--C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .-.+|..||++.+..+.+.+|.||++|  |++|+.++|.++++|+++.+.+.+++||+++++   .|+.+|+      |+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~------V~   82 (111)
T cd02965          12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFG------VL   82 (111)
T ss_pred             CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcC------CC
Confidence            457899999988888999999999997  999999999999999999988899999999654   5999999      89


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHH
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVT  246 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv  246 (658)
                      +.||+++|++|..    ...+.|..+.+.++
T Consensus        83 sIPTli~fkdGk~----v~~~~G~~~~~e~~  109 (111)
T cd02965          83 RTPALLFFRDGRY----VGVLAGIRDWDEYV  109 (111)
T ss_pred             cCCEEEEEECCEE----EEEEeCccCHHHHh
Confidence            9999999999964    45667888777654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.43  E-value=7.5e-14  Score=132.50  Aligned_cols=90  Identities=16%  Similarity=0.367  Sum_probs=74.8

Q ss_pred             ceEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..++.++|++.+.  .+.+|+|.||||||++|+++.|.|+++|+++++. +.+++|||++++   ++|+++++...|
T Consensus        28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~~V~~~~  104 (152)
T cd02962          28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKFRVSTSP  104 (152)
T ss_pred             CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHcCceecC
Confidence            3578899999999883  4579999999999999999999999999999754 699999999654   599999944333


Q ss_pred             ceeeeeEEEEcCCCCC
Q 006171          213 FRRGLPSLVAFPPGCK  228 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~  228 (658)
                      .|+++||+++|++|..
T Consensus       105 ~v~~~PT~ilf~~Gk~  120 (152)
T cd02962         105 LSKQLPTIILFQGGKE  120 (152)
T ss_pred             CcCCCCEEEEEECCEE
Confidence            3444999999998864

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.2e-13  Score=135.89  Aligned_cols=95  Identities=21%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHH
Q 006171            4 PTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQ   81 (658)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~   81 (658)
                      +++..+..++.+..++..+.+.+.....  +...|+|+||||+++++..||.+|||+|++++|||++++  +.+.|..|.
T Consensus         2 A~aat~rw~Lvl~~Llp~l~vgl~egLY--CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iA   79 (329)
T KOG0722|consen    2 APAATERWCLVLILLLPSLFVGLSEGLY--CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIA   79 (329)
T ss_pred             CCccchHHHHHHHHHHHHHHHhhhhhhc--ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhh
Confidence            4445544444333333333333333333  336699999999999999999999999999999998764  456799999


Q ss_pred             HHHHHcCChhhhhcccccC
Q 006171           82 YAYELLTDPLWKRNYDVYG  100 (658)
Q Consensus        82 ~Aye~L~d~~~R~~YD~~g  100 (658)
                      .||++|.|.+.|..||-.-
T Consensus        80 tayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   80 TAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             cccccccchhhHHhHHHHh
Confidence            9999999999999999663

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.42  E-value=8.4e-14  Score=125.84  Aligned_cols=90  Identities=14%  Similarity=0.201  Sum_probs=76.1

Q ss_pred             ceEEEecCCCCCccccC---CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~~---~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..+|.++|.+.|.+   +.+++|.||+|||++|+.+.|.++++|+++.+ +++++||++++    .+|++++     
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~-----   73 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLD-----   73 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcC-----
Confidence            46789999999999843   38999999999999999999999999999864 58999999944    5999998     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCC
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGEL  240 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~r  240 (658)
                       |+++||+++|++|..    ...+.|..
T Consensus        74 -i~~~Pt~~~f~~G~~----v~~~~G~~   96 (113)
T cd02957          74 -IKVLPTLLVYKNGEL----IDNIVGFE   96 (113)
T ss_pred             -CCcCCEEEEEECCEE----EEEEecHH
Confidence             889999999999864    34555533

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.42  E-value=2.3e-13  Score=106.45  Aligned_cols=52  Identities=37%  Similarity=0.636  Sum_probs=49.1

Q ss_pred             CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCC
Q 006171           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD   89 (658)
Q Consensus        38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d   89 (658)
                      |||++|||+++++.++||++||+|+++||||++++   +.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999875   67789999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.42  E-value=1.6e-13  Score=129.15  Aligned_cols=67  Identities=10%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             cCcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        37 ~d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ...|+||||+++|  |.++||+|||++++++|||++ ++.++|++|++||++|+|+..|..||.+|.++.
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            3679999999999  999999999999999999997 567899999999999999999999999998864

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.40  E-value=2.6e-13  Score=120.51  Aligned_cols=96  Identities=17%  Similarity=0.141  Sum_probs=80.0

Q ss_pred             CCCCccccCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeE
Q 006171          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      ++|++.+.+++++||.||++||++|+.+.|.+   +++++.+.+...+..||++++. ....++++++      |+++||
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt   75 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT   75 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence            35666777889999999999999999999999   6888888876789999998532 2456899998      889999


Q ss_pred             EEEcCC--CCCCCCCcccccCCCCHhHHHHHH
Q 006171          220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       220 l~~f~~--g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      +++|.+  |.    .+..+.|.++.+.|.+++
T Consensus        76 i~~~~~~~g~----~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          76 YLFYGPGGEP----EPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             EEEECCCCCC----CCcccccccCHHHHHHHh
Confidence            999985  43    357789999999998875

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.39  E-value=4.9e-13  Score=137.41  Aligned_cols=64  Identities=30%  Similarity=0.526  Sum_probs=58.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhhhccccc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVY   99 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~------~~~~f~~i~~Aye~L~d~~~R~~YD~~   99 (658)
                      ..|||+||||.++|+..||.+|||+++.+||||..+.      +..+|..|..|-|||+||++|+.||+.
T Consensus       393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            7899999999999999999999999999999996542      445699999999999999999999974

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.35  E-value=6.2e-13  Score=149.43  Aligned_cols=68  Identities=28%  Similarity=0.522  Sum_probs=62.8

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .|||+||||+++|+.++||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||.||..+.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            59999999999999999999999999999999976  355679999999999999999999999987653

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.34  E-value=1.1e-12  Score=146.35  Aligned_cols=104  Identities=14%  Similarity=0.305  Sum_probs=90.7

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcc
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      ..|..|+.++|++.+ ++++.+||.||||||++|+.+.|.|+++|+.+.+   .+.++.|||+.+.    ++. ++    
T Consensus       346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~----  416 (462)
T TIGR01130       346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE----  416 (462)
T ss_pred             CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC----
Confidence            357899999999998 6789999999999999999999999999999988   5689999999653    333 56    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |+++||+++|++|..  ..+..|.|.++.++|++|+.+.
T Consensus       417 --i~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~~l~~~  453 (462)
T TIGR01130       417 --VEGFPTIKFVPAGKK--SEPVPYDGDRTLEDFSKFIAKH  453 (462)
T ss_pred             --ccccCEEEEEeCCCC--cCceEecCcCCHHHHHHHHHhc
Confidence              889999999998864  2356899999999999999887

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.34  E-value=1.7e-12  Score=122.22  Aligned_cols=101  Identities=14%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (658)
Q Consensus       144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f  223 (658)
                      ..|+..+..+++++|.|||+||++|+.+.|.++++++.+.+...|..||.+.+. ...++++++      |.++||+++|
T Consensus        11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~------V~~iPt~v~~   83 (142)
T cd02950          11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYR------VDGIPHFVFL   83 (142)
T ss_pred             CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcC------CCCCCEEEEE
Confidence            456666678899999999999999999999999999999876788888877432 235888888      8899999999


Q ss_pred             C-CCCCCCCCcccccCCCCHhHHHHHHHHhhcc
Q 006171          224 P-PGCKSSDCMTRFEGELSVDAVTDWFATAILK  255 (658)
Q Consensus       224 ~-~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~  255 (658)
                      . +|..    ...+.|..+.+.|.+++.+.+.+
T Consensus        84 ~~~G~~----v~~~~G~~~~~~l~~~l~~l~~~  112 (142)
T cd02950          84 DREGNE----EGQSIGLQPKQVLAQNLDALVAG  112 (142)
T ss_pred             CCCCCE----EEEEeCCCCHHHHHHHHHHHHcC
Confidence            5 5543    45678999999999998887543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.33  E-value=9.2e-13  Score=119.19  Aligned_cols=82  Identities=17%  Similarity=0.245  Sum_probs=72.8

Q ss_pred             eEEEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .+..+++ ++|.+.+.++.+++|.||+|||++|+.+.|.++++++++.+ +++.+||+++++   .++++++      |+
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~---~l~~~~~------v~   74 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAP---FLVEKLN------IK   74 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCH---HHHHHCC------Cc
Confidence            4677887 88999998889999999999999999999999999998754 699999999554   5899998      88


Q ss_pred             eeeEEEEcCCCCC
Q 006171          216 GLPSLVAFPPGCK  228 (658)
Q Consensus       216 ~yPTl~~f~~g~~  228 (658)
                      ++||+++|++|..
T Consensus        75 ~vPt~l~fk~G~~   87 (113)
T cd02989          75 VLPTVILFKNGKT   87 (113)
T ss_pred             cCCEEEEEECCEE
Confidence            9999999999853

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PTZ00051 thioredoxin; Provisional

Probab=99.31  E-value=1.9e-12  Score=113.23  Aligned_cols=93  Identities=16%  Similarity=0.329  Sum_probs=75.0

Q ss_pred             EEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          139 NVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       139 ~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      .++++ ++|+..+..+++++|.||++||++|+++.|.|+++++++.+ +.++.|||+++   ..++++++      |.++
T Consensus         3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~---~~~~~~~~------v~~~   72 (98)
T PTZ00051          3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDEL---SEVAEKEN------ITSM   72 (98)
T ss_pred             EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcch---HHHHHHCC------Ccee
Confidence            44444 56777778889999999999999999999999999997654 58999999954   45999999      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHH
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVT  246 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv  246 (658)
                      ||+++|++|..    ...+.|. ..++|.
T Consensus        73 Pt~~~~~~g~~----~~~~~G~-~~~~~~   96 (98)
T PTZ00051         73 PTFKVFKNGSV----VDTLLGA-NDEALK   96 (98)
T ss_pred             eEEEEEeCCeE----EEEEeCC-CHHHhh
Confidence            99999998864    4566775 345543

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.31  E-value=3.2e-12  Score=108.66  Aligned_cols=92  Identities=17%  Similarity=0.325  Sum_probs=78.9

Q ss_pred             CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (658)
Q Consensus       144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f  223 (658)
                      ++|++.+..+++++|.||++||++|+.+.|.++++++. .+...++.|||+.+   ..++++++      +.++||+++|
T Consensus         1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~------v~~~P~~~~~   70 (93)
T cd02947           1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDEN---PELAEEYG------VRSIPTFLFF   70 (93)
T ss_pred             CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCC---hhHHHhcC------cccccEEEEE
Confidence            35777776669999999999999999999999999988 56679999999954   45899998      8899999999


Q ss_pred             CCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          224 PPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       224 ~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      .+|..    ...|.|..+.+.|.+|+
T Consensus        71 ~~g~~----~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          71 KNGKE----VDRVVGADPKEELEEFL   92 (93)
T ss_pred             ECCEE----EEEEecCCCHHHHHHHh
Confidence            98853    46778988889998886

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.30  E-value=1.2e-12  Score=114.26  Aligned_cols=93  Identities=16%  Similarity=0.274  Sum_probs=74.1

Q ss_pred             CCCCCccccC--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          143 SEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       143 ~~nF~~~v~~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      .++|++.+..  +++++|.||++||++|+++.|.++++++.+.+.+.+.+||++++   ..++++++      |+++||+
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~---~~~~~~~~------i~~~Pt~   72 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL---PEISEKFE------ITAVPTF   72 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC---HHHHHhcC------CccccEE
Confidence            3567777743  59999999999999999999999999999866679999999944   45899998      8899999


Q ss_pred             EEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      ++|.+|..    ...+.|. +.+.|.+.+
T Consensus        73 ~~~~~g~~----~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          73 VFFRNGTI----VDRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEECCEE----EEEEeCC-CHHHHHHhh
Confidence            99998753    3444553 456666543

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=8.4e-12  Score=111.26  Aligned_cols=84  Identities=13%  Similarity=0.202  Sum_probs=70.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      .+++++|.|||+|||+|+.++|.++++|.++.. +.|.+||+++   ...+|++++      |+..||+++|++|..   
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~---   86 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEE---   86 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEE---
Confidence            468999999999999999999999999999988 8999999997   455899998      999999999999965   


Q ss_pred             CcccccCCCCHhHHHHHHH
Q 006171          232 CMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv~  250 (658)
                       ..++-|.. .+.+.+.+.
T Consensus        87 -~~~~vGa~-~~~l~~~i~  103 (106)
T KOG0907|consen   87 -VDEVVGAN-KAELEKKIA  103 (106)
T ss_pred             -EEEEecCC-HHHHHHHHH
Confidence             35555654 335555443

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=4.6e-12  Score=126.56  Aligned_cols=65  Identities=34%  Similarity=0.620  Sum_probs=60.7

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccC
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYG  100 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g  100 (658)
                      ..+||+||||+++|+..||++|||+++++||||+++.    +.++|..|++||++|+|+..|+.||.++
T Consensus         5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            3599999999999999999999999999999999874    4588999999999999999999999985

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.26  E-value=8e-12  Score=109.62  Aligned_cols=86  Identities=12%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCC
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~  230 (658)
                      +.+++++|.||++||+.|+.+.|.++++++++.+.+.+..||+++++   +++++++      |.++||+.+|.+|..  
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---~l~~~~~------v~~vPt~~i~~~g~~--   79 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---EIAEAAG------IMGTPTVQFFKDKEL--   79 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCC------CeeccEEEEEECCeE--
Confidence            57889999999999999999999999999999877789999999554   5889998      889999999988754  


Q ss_pred             CCcccccCCCCHhHHHHHH
Q 006171          231 DCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       231 ~~~~~Y~G~rs~~~Lv~fv  249 (658)
                        ...+.|.++.+.|.+|+
T Consensus        80 --v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          80 --VKEISGVKMKSEYREFI   96 (97)
T ss_pred             --EEEEeCCccHHHHHHhh
Confidence              57788999999998886

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.23  E-value=6e-12  Score=117.50  Aligned_cols=97  Identities=11%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             CCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       143 ~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      .++|++.|  ..+++++|.|||+||++|+.+.|.++++|+++++...|.+||.++++   +++++|+      |++.||+
T Consensus        11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~---dla~~y~------I~~~~t~   81 (142)
T PLN00410         11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP---DFNTMYE------LYDPCTV   81 (142)
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHcC------ccCCCcE
Confidence            46677777  35789999999999999999999999999999988899999999665   5999999      8878766


Q ss_pred             E-EcCCCCCCCCCcccccC--------CCCHhHHHHHHHH
Q 006171          221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFAT  251 (658)
Q Consensus       221 ~-~f~~g~~~~~~~~~Y~G--------~rs~~~Lv~fv~k  251 (658)
                      + +|++|..   ......|        ..+.++|++-+..
T Consensus        82 ~~ffk~g~~---~vd~~tG~~~k~~~~~~~k~~l~~~i~~  118 (142)
T PLN00410         82 MFFFRNKHI---MIDLGTGNNNKINWALKDKQEFIDIVET  118 (142)
T ss_pred             EEEEECCeE---EEEEecccccccccccCCHHHHHHHHHH
Confidence            6 8898863   1233456        3455566555443

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.18  E-value=2.6e-11  Score=109.73  Aligned_cols=95  Identities=12%  Similarity=0.152  Sum_probs=76.8

Q ss_pred             CCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCC
Q 006171          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP  225 (658)
Q Consensus       146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~  225 (658)
                      |...+......+|.||++||++|+.+.|.+++++... +.+.+..||.++++   .++++++      |.++||+.+|.+
T Consensus        15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~l~~~~~------v~~vPt~~i~~~   84 (113)
T cd02975          15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---EKAEKYG------VERVPTTIFLQD   84 (113)
T ss_pred             HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---HHHHHcC------CCcCCEEEEEeC
Confidence            4444545667889999999999999999999999876 56789999999554   5999999      889999999998


Q ss_pred             CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          226 GCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       226 g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |...  ....|.|..+...+.+|+...
T Consensus        85 g~~~--~~~~~~G~~~~~el~~~i~~i  109 (113)
T cd02975          85 GGKD--GGIRYYGLPAGYEFASLIEDI  109 (113)
T ss_pred             Ceec--ceEEEEecCchHHHHHHHHHH
Confidence            7541  223688988888888888654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.17  E-value=2e-11  Score=119.03  Aligned_cols=81  Identities=15%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             eEEEecC-CCCCcccc-C--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTS-EDFPSIFH-D--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~-~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|..++. ++|.+.|. +  +.+++|.||+|||++|+.+.|.++++|..+. .++|.+||+++.    .++.+++     
T Consensus        63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~----~l~~~f~-----  132 (175)
T cd02987          63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT----GASDEFD-----  132 (175)
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch----hhHHhCC-----
Confidence            5788999 99999984 3  3499999999999999999999999999874 479999999943    5888988     


Q ss_pred             ceeeeeEEEEcCCCCC
Q 006171          213 FRRGLPSLVAFPPGCK  228 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~  228 (658)
                       |+++|||++|++|..
T Consensus       133 -v~~vPTlllyk~G~~  147 (175)
T cd02987         133 -TDALPALLVYKGGEL  147 (175)
T ss_pred             -CCCCCEEEEEECCEE
Confidence             889999999999853

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.17  E-value=2.7e-11  Score=116.59  Aligned_cols=63  Identities=16%  Similarity=0.270  Sum_probs=55.6

Q ss_pred             cCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCChHH------HHHHHHHHHHHcCChhhhhccccc
Q 006171           37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDVY   99 (658)
Q Consensus        37 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~~~~------~f~~i~~Aye~L~d~~~R~~YD~~   99 (658)
                      .|||++|||++.  ++..+|+++||+|+++||||++....+      .+..||+||++|+||.+|+.|+.-
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            489999999997  789999999999999999999764333      367999999999999999999753

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.15  E-value=5.1e-11  Score=105.12  Aligned_cols=87  Identities=18%  Similarity=0.268  Sum_probs=74.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee--eeeEEEEcCC--CC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC  227 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~--~yPTl~~f~~--g~  227 (658)
                      .+.++++.||++||++|+.+.|.++++|+++++.++++.||+++++   .+++.++      |.  ++||+++|..  |.
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---~~~~~~~------i~~~~~P~~~~~~~~~~~   81 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---RHLEYFG------LKEEDLPVIAIINLSDGK   81 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---HHHHHcC------CChhhCCEEEEEeccccc
Confidence            3689999999999999999999999999999999999999999544   5899999      88  9999999998  43


Q ss_pred             CCCCCccccc-CCCCHhHHHHHHHHh
Q 006171          228 KSSDCMTRFE-GELSVDAVTDWFATA  252 (658)
Q Consensus       228 ~~~~~~~~Y~-G~rs~~~Lv~fv~k~  252 (658)
                      .     ..+. |..+.++|.+|+.+.
T Consensus        82 k-----~~~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          82 K-----YLMPEEELTAESLEEFVEDF  102 (103)
T ss_pred             c-----cCCCccccCHHHHHHHHHhh
Confidence            3     3333 455899999998764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.14  E-value=4.4e-11  Score=115.81  Aligned_cols=62  Identities=15%  Similarity=0.303  Sum_probs=54.7

Q ss_pred             cCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccc
Q 006171           37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        37 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      .|||++|||++.  ++..+|+++||+|++++|||+...        +.+.+..||+||++|+||.+|+.|+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            389999999996  678999999999999999998652        23468999999999999999999984

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.11  E-value=3.2e-11  Score=107.87  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=65.8

Q ss_pred             CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171          144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       144 ~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      +.|++.|.  .+++++|.|+|+||++|+.+.|.++++|+++++.+.|.+||.++.+   +++++++      |+..||++
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~---dva~~y~------I~amPtfv   73 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP---VYTQYFD------ISYIPSTI   73 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH---HHHHhcC------ceeCcEEE
Confidence            34556662  5899999999999999999999999999999877899999999555   5999999      88999999


Q ss_pred             EcCCCC
Q 006171          222 AFPPGC  227 (658)
Q Consensus       222 ~f~~g~  227 (658)
                      +|.+|.
T Consensus        74 ffkngk   79 (114)
T cd02986          74 FFFNGQ   79 (114)
T ss_pred             EEECCc
Confidence            999885

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.11  E-value=9e-11  Score=113.99  Aligned_cols=64  Identities=17%  Similarity=0.290  Sum_probs=55.6

Q ss_pred             CccCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--hH------HHHHHHHHHHHHcCChhhhhcccc
Q 006171           35 FPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--ST------ADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        35 ~~~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--~~------~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      +..|||++|||++.  ++..+|+++||+|+++||||+++.  ..      +.+..||+||++|+||.+|+.|+.
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            46799999999985  678999999999999999998753  22      236899999999999999999994

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.10  E-value=9.2e-11  Score=107.58  Aligned_cols=104  Identities=16%  Similarity=0.128  Sum_probs=80.9

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------hhhHHHhhCCCC
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIG  209 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------~~~~Lc~k~~i~  209 (658)
                      +..+|.++|.+.+.+++..+|.||++||++|+.+.|..++++++  ....+..||.+.+.        ....+.+++++.
T Consensus         8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295         8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            46688888999998899999999999999999999999999997  33579999988432        223466666521


Q ss_pred             cccceeeeeEEEEcCCCCCCCCCcccccC-CCCHhHHHHHH
Q 006171          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF  249 (658)
Q Consensus       210 k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G-~rs~~~Lv~fv  249 (658)
                        +.|.+.||+++|++|..    .....| ..+.++|.+|+
T Consensus        86 --~~i~~~PT~v~~k~Gk~----v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        86 --TSFMGTPTFVHITDGKQ----VSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             --ccCCCCCEEEEEeCCeE----EEEEeCCCCCHHHHHHHh
Confidence              22778999999999964    344567 55688888885

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.07  E-value=1.7e-10  Score=111.66  Aligned_cols=63  Identities=16%  Similarity=0.354  Sum_probs=56.0

Q ss_pred             ccCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccc
Q 006171           36 PPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        36 ~~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      ..|||++||+++.  .+..+|+++||+|+++||||++..        +.+.+..||+||++|+||.+|+.|+.
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            5699999999987  568999999999999999998753        23459999999999999999999995

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.06  E-value=1.2e-10  Score=115.02  Aligned_cols=79  Identities=14%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             eEEEecCCCCCccc-cC--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..+|..+|...| .+  +.+++|.||++||++|+.+.|.|+++|..+. .++|.+||++   .   ++.+|+      
T Consensus        83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------  149 (192)
T cd02988          83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------  149 (192)
T ss_pred             eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------
Confidence            57889999998877 33  3589999999999999999999999999984 4699999998   3   356777      


Q ss_pred             eeeeeEEEEcCCCCC
Q 006171          214 RRGLPSLVAFPPGCK  228 (658)
Q Consensus       214 V~~yPTl~~f~~g~~  228 (658)
                      |+++|||++|++|..
T Consensus       150 i~~lPTlliyk~G~~  164 (192)
T cd02988         150 DKNLPTILVYRNGDI  164 (192)
T ss_pred             CCCCCEEEEEECCEE
Confidence            889999999999864

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.06  E-value=1.4e-10  Score=122.68  Aligned_cols=70  Identities=30%  Similarity=0.459  Sum_probs=63.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      .-|||+|||++.+++..+||++||+|+.++||||-++        .++.+.+|++||+.|+|...|+.|-.||..+.+
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p  174 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP  174 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence            5699999999999999999999999999999998663        356799999999999999999999999987643

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.06  E-value=4.4e-10  Score=94.79  Aligned_cols=80  Identities=11%  Similarity=0.103  Sum_probs=68.1

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      .+..||+|||++|+.+.|.++++++++++.+.+..||+++++   .++++++      |+++||+++  +|.      ..
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~vPt~~~--~g~------~~   64 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP---QKAMEYG------IMAVPAIVI--NGD------VE   64 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH---HHHHHcC------CccCCEEEE--CCE------EE
Confidence            467899999999999999999999999877789999998554   5888888      889999986  442      46


Q ss_pred             ccCCCCHhHHHHHHHHh
Q 006171          236 FEGELSVDAVTDWFATA  252 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv~k~  252 (658)
                      +.|..+.+.|.+++.+.
T Consensus        65 ~~G~~~~~~l~~~l~~~   81 (82)
T TIGR00411        65 FIGAPTKEELVEAIKKR   81 (82)
T ss_pred             EecCCCHHHHHHHHHhh
Confidence            78999999999988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.04  E-value=2.1e-10  Score=102.68  Aligned_cols=52  Identities=27%  Similarity=0.296  Sum_probs=48.5

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT   88 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~   88 (658)
                      ..++|++|||+++++.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999985 67889999999999985

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.9e-10  Score=122.69  Aligned_cols=68  Identities=25%  Similarity=0.380  Sum_probs=62.5

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|+|.+|||++++++++||+.||++|...|||||.  .+.|.|+.++.|||+|+|+++|+.||.-...+
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            679999999999999999999999999999999886  57788999999999999999999999765443

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.02  E-value=3e-10  Score=104.24  Aligned_cols=95  Identities=18%  Similarity=0.287  Sum_probs=74.2

Q ss_pred             cccCC-CcEEEEEeccCCCCCCCChHHHH---HHHHHhhcccceeeeecccch----------hhhHHHhhCCCCcccce
Q 006171          149 IFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFR  214 (658)
Q Consensus       149 ~v~~~-~~~lV~FYapwC~~Ck~l~P~w~---~~A~~l~g~~~vg~Vdc~e~~----------~~~~Lc~k~~i~k~f~V  214 (658)
                      ...++ ++++|.|||+||++|+++.|.+.   ++.+.++....+..||.+++.          ....++.+++      |
T Consensus         9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~------v   82 (125)
T cd02951           9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR------V   82 (125)
T ss_pred             HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC------C
Confidence            44567 89999999999999999999885   566667655577888887431          1245888888      8


Q ss_pred             eeeeEEEEcCCC-CCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g-~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +++||+++|.++ +.   ....+.|..+.+.+..++...
T Consensus        83 ~~~Pt~~~~~~~gg~---~~~~~~G~~~~~~~~~~l~~~  118 (125)
T cd02951          83 RFTPTVIFLDPEGGK---EIARLPGYLPPDEFLAYLEYV  118 (125)
T ss_pred             ccccEEEEEcCCCCc---eeEEecCCCCHHHHHHHHHHH
Confidence            899999999875 33   346778999888888887665

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=3.9e-10  Score=111.76  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             EEEec-CCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVT-SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt-~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |++++ +++|...+.  ..+.++|.|||.|||+|++++|.|+.+|..+.+ ..+.+||.+   .....+.-+|      |
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd---~c~~taa~~g------V   72 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVD---ECRGTAATNG------V   72 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHH---HhhchhhhcC------c
Confidence            44444 467988883  567999999999999999999999999999943 489999998   3233666677      9


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      +..||+++|++|.+    ...++|. ++.+|.+-+.++.
T Consensus        73 ~amPTFiff~ng~k----id~~qGA-d~~gLe~kv~~~~  106 (288)
T KOG0908|consen   73 NAMPTFIFFRNGVK----IDQIQGA-DASGLEEKVAKYA  106 (288)
T ss_pred             ccCceEEEEecCeE----eeeecCC-CHHHHHHHHHHHh
Confidence            99999999999976    3556664 4777777777763

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2.2e-10  Score=119.83  Aligned_cols=69  Identities=35%  Similarity=0.561  Sum_probs=62.4

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|+|++|||.++|+.++|++|||+++++||||+|+..    ..+|.+|.+||++|+|+.+|..||++|.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~   74 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL   74 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence            46999999999999999999999999999999998743    3359999999999999999999999998543

>PTZ00062 glutaredoxin; Provisional

Probab=98.92  E-value=6.6e-09  Score=103.30  Aligned_cols=162  Identities=8%  Similarity=-0.007  Sum_probs=101.4

Q ss_pred             CCCCCccccC-CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171          143 SEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       143 ~~nF~~~v~~-~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      .++|++.+.+ ....++.|+|+||+.|+++.|..+++++++ +.+.+..||.+           ++      |.++||++
T Consensus         6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d-----------~~------V~~vPtfv   67 (204)
T PTZ00062          6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA-----------DA------NNEYGVFE   67 (204)
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc-----------cC------cccceEEE
Confidence            3456666754 478899999999999999999999999988 45799999976           45      88999999


Q ss_pred             EcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCC---CCCCcH-HHH
Q 006171          222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT---GERASP-FVR  297 (658)
Q Consensus       222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~---~~~~~~-~~~  297 (658)
                      +|++|..    ..++.|.- +..|..++.+.....+..      . +.+++...-...+++||-..+   ..|+.- ..+
T Consensus        68 ~~~~g~~----i~r~~G~~-~~~~~~~~~~~~~~~~~~------~-~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k  135 (204)
T PTZ00062         68 FYQNSQL----INSLEGCN-TSTLVSFIRGWAQKGSSE------D-TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVV  135 (204)
T ss_pred             EEECCEE----EeeeeCCC-HHHHHHHHHHHcCCCCHH------H-HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHH
Confidence            9999864    45666654 888999998873322211      1 233333321222334443321   122211 122


Q ss_pred             HHHHhhccCceEEEEEeccccc--HhHHhhcCCCCCCEEEE
Q 006171          298 QISRNYWAYASFAFVLWREEES--SIWWNTFEVESAPAIVF  336 (658)
Q Consensus       298 ~~A~~~~~~~~f~~v~~~~~~s--~~l~~~f~V~~~Ptlvl  336 (658)
                      .+...+  .+.|..+.+.+...  +.+.+.-|-.++|.|++
T Consensus       136 ~~L~~~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        136 NMLNSS--GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             HHHHHc--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence            233322  56667666543221  33445456667888765

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.92  E-value=5.7e-10  Score=101.52  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=63.7

Q ss_pred             CCCCccccC--CCcEEEEEec-------cCCCCCCCChHHHHHHHHHhhcccceeeeecccch----hhhHHHhhCCCCc
Q 006171          144 EDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQ  210 (658)
Q Consensus       144 ~nF~~~v~~--~~~~lV~FYa-------pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~----~~~~Lc~k~~i~k  210 (658)
                      ++|.+.|..  +++++|.|||       +||++|+.+.|.+++++.++.+.+++.+||+++++    ....+..+++   
T Consensus        10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~---   86 (119)
T cd02952          10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK---   86 (119)
T ss_pred             HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC---
Confidence            456666643  6899999999       99999999999999999999866899999998532    1234777777   


Q ss_pred             cccee-eeeEEEEcCCCC
Q 006171          211 IFFRR-GLPSLVAFPPGC  227 (658)
Q Consensus       211 ~f~V~-~yPTl~~f~~g~  227 (658)
                         |+ ++||+++|..|.
T Consensus        87 ---I~~~iPT~~~~~~~~  101 (119)
T cd02952          87 ---LTTGVPTLLRWKTPQ  101 (119)
T ss_pred             ---cccCCCEEEEEcCCc
Confidence               98 999999997764

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PHA02624 large T antigen; Provisional

Probab=98.91  E-value=1e-09  Score=122.83  Aligned_cols=60  Identities=12%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             ccCcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcc
Q 006171           36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY   96 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~Y   96 (658)
                      ..++|++|||+++|  +.++||+|||+++++||||++ ++.++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            46899999999999  999999999999999999996 6688999999999999999999999

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.91  E-value=1.7e-08  Score=93.55  Aligned_cols=117  Identities=23%  Similarity=0.313  Sum_probs=85.4

Q ss_pred             CCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCC-----ChhHHHHHHHHHHHHHhhccccccccccccCCchH
Q 006171          366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-----SPELNKMRETIRRVQETLLSDDESNAADTDQSLAP  440 (658)
Q Consensus       366 ~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~-----~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~  440 (658)
                      |.+.+|++++.++..|..       +    .+|||++.+.     .++.+++++.++.+|+                   
T Consensus         2 ~~~~~l~~~~~~~~~C~~-------~----~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk-------------------   51 (130)
T cd02983           2 PEIIELTSEDVFEETCEE-------K----QLCIIAFLPHILDCQASCRNKYLEILKSVAE-------------------   51 (130)
T ss_pred             CceEEecCHHHHHhhccC-------C----CeEEEEEcCccccCCHHHHHHHHHHHHHHHH-------------------
Confidence            567899999999989932       2    5999999873     2345677778877777                   


Q ss_pred             HHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccc
Q 006171          441 AAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQE  520 (658)
Q Consensus       441 ~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~  520 (658)
                         +|+++.+.|+|+|++.|..+++.|-.+.            .+.|.++|+    |...  -||.      +       
T Consensus        52 ---~~kgk~i~Fv~vd~~~~~~~~~~fgl~~------------~~~P~v~i~----~~~~--~KY~------~-------   97 (130)
T cd02983          52 ---KFKKKPWGWLWTEAGAQLDLEEALNIGG------------FGYPAMVAI----NFRK--MKFA------T-------   97 (130)
T ss_pred             ---HhcCCcEEEEEEeCcccHHHHHHcCCCc------------cCCCEEEEE----eccc--Cccc------c-------
Confidence               8888889999999999999999883221            135999998    5433  1443      1       


Q ss_pred             cCccccchhccCCCCChhHHHHHHHHHhhcCCCCCCC
Q 006171          521 VDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLP  557 (658)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~  557 (658)
                                +.|+-+.+.|.+|+.+++. |....++
T Consensus        98 ----------~~~~~t~e~i~~Fv~~~l~-Gkl~~~~  123 (130)
T cd02983          98 ----------LKGSFSEDGINEFLRELSY-GRGPTLP  123 (130)
T ss_pred             ----------ccCccCHHHHHHHHHHHHc-CCccccc
Confidence                      1223366999999999998 6555555

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.87  E-value=1.3e-09  Score=113.00  Aligned_cols=54  Identities=26%  Similarity=0.417  Sum_probs=48.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHcCC
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELLTD   89 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~----------~~~~~f~~i~~Aye~L~d   89 (658)
                      ..++|++|||++++|.+|||+|||+|+++||||++.          .+.++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999999999999853          145789999999999985

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.6e-09  Score=114.48  Aligned_cols=64  Identities=28%  Similarity=0.472  Sum_probs=59.4

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhhccccc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVY   99 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Aye~L~d~~~R~~YD~~   99 (658)
                      ..|||+|||+.+.++..|||+|||++++.||||++.++    +.+|+++-+||.+|+||.+|..||.-
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            68999999999999999999999999999999998744    44599999999999999999999975

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.82  E-value=1.3e-07  Score=92.04  Aligned_cols=169  Identities=14%  Similarity=0.237  Sum_probs=122.4

Q ss_pred             ChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHH
Q 006171          171 FSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF  249 (658)
Q Consensus       171 l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv  249 (658)
                      +...|.++|+.+.+...++.+.-.      ++|++++      +.. |+|++|+++..   ....|.|. .+.++|.+|+
T Consensus         8 ~~~~f~~~A~~~~~~~~F~~~~~~------~~~~~~~------~~~-p~i~~~k~~~~---~~~~y~~~~~~~~~l~~fI   71 (184)
T PF13848_consen    8 LFEIFEEAAEKLKGDYQFGVTFNE------ELAKKYG------IKE-PTIVVYKKFDE---KPVVYDGDKFTPEELKKFI   71 (184)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEE-H------HHHHHCT------CSS-SEEEEEECTTT---SEEEESSSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCcEEEEEcHH------HHHHHhC------CCC-CcEEEeccCCC---CceecccccCCHHHHHHHH
Confidence            456899999999988888888733      2888888      767 99999998543   36889998 8999999999


Q ss_pred             HHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCC----CcHHHHHHHHhhccCceEEEEEecccccHhHHhh
Q 006171          250 ATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNT  325 (658)
Q Consensus       250 ~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~----~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~  325 (658)
                      .+.  .+|.+..++..+ ...+....  ..+.+++|.++...    ....++.+|..+++.+.|+++...  ....+++.
T Consensus        72 ~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~~  144 (184)
T PF13848_consen   72 KKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLKY  144 (184)
T ss_dssp             HHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHHH
T ss_pred             HHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHHH
Confidence            988  578877777766 55555432  22355566532111    123345688889888888888644  23668899


Q ss_pred             cCCC--CCCEEEEEeCCCCCe-eeecCCCChHHHHHHHHh
Q 006171          326 FEVE--SAPAIVFLKDPGVKP-VVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       326 f~V~--~~Ptlvlfk~~~~~p-~~y~g~~~~~~L~~fi~~  362 (658)
                      +|++  ..|+++++.....+. ..+.+.++.+.|.+|++.
T Consensus       145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            9998  699999998544332 123788899999999863

...

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.78  E-value=2.8e-09  Score=105.13  Aligned_cols=102  Identities=12%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             cceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCCCCcccc
Q 006171          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .+++..++.+|+...+.  .-|+++||||||+.|+.+.|.|+..|.--.+.. ++|.||.+.|+         +.+..|.
T Consensus        23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np---------gLsGRF~   91 (248)
T KOG0913|consen   23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP---------GLSGRFL   91 (248)
T ss_pred             cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc---------ccceeeE
Confidence            34789999999987774  359999999999999999999999998777765 99999999776         4445667


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |...|||.=.++|.     ...|.|.|+.+++++|+..+
T Consensus        92 vtaLptIYHvkDGe-----FrrysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen   92 VTALPTIYHVKDGE-----FRRYSGARDKNDFISFEEHR  125 (248)
T ss_pred             EEecceEEEeeccc-----cccccCcccchhHHHHHHhh
Confidence            99999999999985     48999999999999999654

>PHA02125 thioredoxin-like protein

Probab=98.74  E-value=1e-08  Score=85.70  Aligned_cols=69  Identities=17%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      +|.||||||++|+.+.|.+++++      ..+..||+++++   +++++++      |+++||++   .|..    ...+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~---~l~~~~~------v~~~PT~~---~g~~----~~~~   59 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGV---ELTAKHH------IRSLPTLV---NTST----LDRF   59 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCH---HHHHHcC------CceeCeEE---CCEE----EEEE
Confidence            78999999999999999997653      357889988544   5899998      88999998   3322    2355


Q ss_pred             cC-CCCHhHHHH
Q 006171          237 EG-ELSVDAVTD  247 (658)
Q Consensus       237 ~G-~rs~~~Lv~  247 (658)
                      .| +++..+|.+
T Consensus        60 ~G~~~~~~~l~~   71 (75)
T PHA02125         60 TGVPRNVAELKE   71 (75)
T ss_pred             eCCCCcHHHHHH
Confidence            66 344455543

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.73  E-value=2.4e-08  Score=100.64  Aligned_cols=82  Identities=13%  Similarity=0.096  Sum_probs=67.5

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~  232 (658)
                      +.+.++.||++||++|+.+.|.+++++.+ .+.+.+..||.++++   .++++++      |.++||++++.+|      
T Consensus       133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~---~~~~~~~------V~~vPtl~i~~~~------  196 (215)
T TIGR02187       133 EPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENP---DLAEKYG------VMSVPKIVINKGV------  196 (215)
T ss_pred             CCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCH---HHHHHhC------CccCCEEEEecCC------
Confidence            34455559999999999999999999987 355678899999554   5899999      8899999998765      


Q ss_pred             cccccCCCCHhHHHHHHHH
Q 006171          233 MTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       233 ~~~Y~G~rs~~~Lv~fv~k  251 (658)
                       ..|.|..+.+.|++|+.+
T Consensus       197 -~~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       197 -EEFVGAYPEEQFLEYILS  214 (215)
T ss_pred             -EEEECCCCHHHHHHHHHh
Confidence             237899999999999865

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.72  E-value=9.5e-09  Score=93.57  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee--eeEEEEcC-CCC
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC  227 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~--yPTl~~f~-~g~  227 (658)
                      .+++++||.|||+||++|+.+.|.+.+.+.......++..||.+.+..  .+.+.++      +.+  +||+++|. +|.
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~------~~g~~vPt~~f~~~~Gk   88 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFS------PDGGYIPRILFLDPSGD   88 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcc------cCCCccceEEEECCCCC
Confidence            468999999999999999999999999877654434677777764331  1345555      655  99999996 554


Q ss_pred             CCCCCcccccCCCCHhHHHHHH
Q 006171          228 KSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       228 ~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      . ........|.++.+.+.+++
T Consensus        89 ~-~~~~~~~~~~~~~~~f~~~~  109 (117)
T cd02959          89 V-HPEIINKKGNPNYKYFYSSA  109 (117)
T ss_pred             C-chhhccCCCCccccccCCCH
Confidence            3 11122344555544444433

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.69  E-value=2e-08  Score=84.26  Aligned_cols=73  Identities=18%  Similarity=0.135  Sum_probs=56.3

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      -|.||++||++|+.+.|.++++++++.....+..|| + . .   .+.+++      |.+.|||++  +|..      .+
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~-~-~---~a~~~~------v~~vPti~i--~G~~------~~   61 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D-M-N---EILEAG------VTATPGVAV--DGEL------VI   61 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C-H-H---HHHHcC------CCcCCEEEE--CCEE------EE
Confidence            389999999999999999999999997666787777 1 1 2   366777      889999999  6643      26


Q ss_pred             cCC-CCHhHHHHHH
Q 006171          237 EGE-LSVDAVTDWF  249 (658)
Q Consensus       237 ~G~-rs~~~Lv~fv  249 (658)
                      .|. .+.+.|.+++
T Consensus        62 ~G~~~~~~~l~~~l   75 (76)
T TIGR00412        62 MGKIPSKEEIKEIL   75 (76)
T ss_pred             EeccCCHHHHHHHh
Confidence            775 3456776664

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.66  E-value=4.4e-08  Score=112.35  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             CCCCCcccc----CCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccc-hhhhHHHhhCCCCcccce
Q 006171          143 SEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR  214 (658)
Q Consensus       143 ~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~-~~~~~Lc~k~~i~k~f~V  214 (658)
                      .++|++.+.    ++++++|+|||+||++|+.++|..   .++.+.+++ ..+.+||++++ ....+++++++      |
T Consensus       460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v  532 (571)
T PRK00293        460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V  532 (571)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence            456666662    468999999999999999999875   677787864 57889999854 33456899998      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .++||+++|.++.+. .....+.|..+.+++.+++.+.
T Consensus       533 ~g~Pt~~~~~~~G~~-i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        533 LGLPTILFFDAQGQE-IPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCCEEEEECCCCCC-cccccccCCCCHHHHHHHHHHh
Confidence            899999999743321 1124678999999999998764

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.63  E-value=3.5e-08  Score=95.61  Aligned_cols=62  Identities=10%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             cCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--h------HHHHHHHHHHHHHcCChhhhhcccc
Q 006171           37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        37 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--~------~~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      .|||++||+++.  .+..+++++||+|.+++|||+...  .      .+.-..||+||.+|+||.+|+.|=.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            499999999987  889999999999999999997642  2      2347899999999999999998864

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=4.3e-08  Score=93.91  Aligned_cols=63  Identities=22%  Similarity=0.339  Sum_probs=56.4

Q ss_pred             CccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhhccc
Q 006171           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYD   97 (658)
Q Consensus        35 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Aye~L~d~~~R~~YD   97 (658)
                      +.-|+|+||.|.+..+.++||+.||+|++..|||+|+.+    ...|..+.+||..|-|+..|..-+
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            577999999999999999999999999999999999954    445999999999999998776544

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.57  E-value=4e-08  Score=87.98  Aligned_cols=89  Identities=21%  Similarity=0.254  Sum_probs=61.0

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHH---HHHhhcccceeeeecccch-----------------hhhHHHhhCCCCc
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQ  210 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~---A~~l~g~~~vg~Vdc~e~~-----------------~~~~Lc~k~~i~k  210 (658)
                      .++++.+|.|++|||++|+++.++..+.   +..++....+..+++++..                 ....+++.++   
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---   79 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG---   79 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC---
Confidence            3578999999999999999998888754   3444444577777776432                 1235778888   


Q ss_pred             ccceeeeeEEEEcC-CCCCCCCCcccccCCCCHhHHHHHH
Q 006171          211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       211 ~f~V~~yPTl~~f~-~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                         |+++||++++. +|..    ...+.|..+.++|.+++
T Consensus        80 ---v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   80 ---VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred             ---CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence               99999999996 4542    34678999999988764

...

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.54  E-value=1.8e-07  Score=90.48  Aligned_cols=92  Identities=10%  Similarity=0.158  Sum_probs=72.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-------------------hhHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------ATHLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-------------------~~~Lc~k~~i~k~  211 (658)
                      .+++++|.||++||++|+...|.+.++++++.+. +.+..|++++...                   ...+++.++    
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  135 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG----  135 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence            4688999999999999999999999999999765 5888888874321                   134666666    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++|+++++.+++.   ....+.|..+.+.+.+++.+.
T Consensus       136 --v~~~P~~~lid~~g~---i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        136 --VGPLPTTFLIDKDGK---VVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             --CCCcCeEEEECCCCc---EEEEEeCCCCHHHHHHHHHHh
Confidence              889999988865543   345678999999999988653

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.45  E-value=2e-07  Score=89.16  Aligned_cols=51  Identities=16%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhccccc
Q 006171           49 SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVY   99 (658)
Q Consensus        49 a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~~   99 (658)
                      .+..+|+++||+|+++||||+.+.        +.+.+..||+||++|+||.+|+.|+.-
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            478999999999999999997542        235699999999999999999999954

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>TIGR02740 TraF-like TraF-like protein

Probab=98.44  E-value=3.8e-07  Score=95.13  Aligned_cols=90  Identities=16%  Similarity=0.101  Sum_probs=68.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------hhhHHHhhCCCCcccceeeeeEEEEc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF  223 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------~~~~Lc~k~~i~k~f~V~~yPTl~~f  223 (658)
                      .+++.||.||++||++|+.+.|.++++++++.  +.|-.|+.+...        ....++++++      |.++||++++
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv  236 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA  236 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence            47899999999999999999999999999874  455556655321        1134778888      8899999999


Q ss_pred             CC-CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       224 ~~-g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .+ |+.   ......|..+.+.|.+.+...
T Consensus       237 ~~~~~~---v~~v~~G~~s~~eL~~~i~~~  263 (271)
T TIGR02740       237 DPDPNQ---FTPIGFGVMSADELVDRILLA  263 (271)
T ss_pred             ECCCCE---EEEEEeCCCCHHHHHHHHHHH
Confidence            87 432   123346889999999888654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.43  E-value=4.1e-07  Score=81.58  Aligned_cols=63  Identities=13%  Similarity=0.188  Sum_probs=45.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      ++++++|.||++||++|++..|.++++++.+++.+.+..|.-++......++++++      +.++|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~------~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG------LEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC------CCCCcEE
Confidence            36899999999999999999999999998876555444442222223445777776      4466664

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.41  E-value=3.8e-07  Score=74.00  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=47.7

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      -++.||++||++|+.+.|.+++++.. .+.+.+..+|.++++   +++++++      |.++||+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~---~l~~~~~------i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFP---DLADEYG------VMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCH---hHHHHcC------CcccCEEEE
Confidence            36789999999999999999999765 345689999998554   4889998      889999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.36  E-value=3.3e-07  Score=84.21  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=54.9

Q ss_pred             CCccccCCCcEEEEEeccCCCCCCCChH-HHH--HHHHHhhcccceeeeecccchhhhHHHhhCC--CCcccceeeeeEE
Q 006171          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKP--IGQIFFRRGLPSL  220 (658)
Q Consensus       146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P-~w~--~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~--i~k~f~V~~yPTl  220 (658)
                      |.....+++++||.|||+||+.|+.|.+ +|.  ++++.+.....+.+||.++++.   +++.+.  ..+.|++.|+||+
T Consensus         8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~---~~~~~~~~~~~~~~~~G~Pt~   84 (124)
T cd02955           8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD---VDKIYMNAAQAMTGQGGWPLN   84 (124)
T ss_pred             HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH---HHHHHHHHHHHhcCCCCCCEE
Confidence            3444468999999999999999999987 343  4677776666777888875443   333210  0001228899999


Q ss_pred             EEcCCCCC
Q 006171          221 VAFPPGCK  228 (658)
Q Consensus       221 ~~f~~g~~  228 (658)
                      +++.+.+.
T Consensus        85 vfl~~~G~   92 (124)
T cd02955          85 VFLTPDLK   92 (124)
T ss_pred             EEECCCCC
Confidence            99976544

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.35  E-value=8.4e-07  Score=80.68  Aligned_cols=95  Identities=18%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             cCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-----------------hhhhHHHh
Q 006171          142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-----------------RLATHLAE  204 (658)
Q Consensus       142 t~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-----------------~~~~~Lc~  204 (658)
                      +.+++......+++++|.||++||++|+.+.|.+.++++.+. .+.|...+++..                 .....+++
T Consensus         9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (123)
T cd03011           9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISA   87 (123)
T ss_pred             CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHH
Confidence            333333333356899999999999999999999999987742 112221111000                 01124777


Q ss_pred             hCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHH
Q 006171          205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD  247 (658)
Q Consensus       205 k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~  247 (658)
                      .++      |.++|+++++.+++.    ...+.|..+.++|.+
T Consensus        88 ~~~------i~~~P~~~vid~~gi----~~~~~g~~~~~~~~~  120 (123)
T cd03011          88 RWG------VSVTPAIVIVDPGGI----VFVTTGVTSEWGLRL  120 (123)
T ss_pred             hCC------CCcccEEEEEcCCCe----EEEEeccCCHHHHHh
Confidence            777      889999999986643    356778888888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.33  E-value=1.2e-06  Score=83.61  Aligned_cols=93  Identities=12%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh---------hhHHH-hhCCCCcccceeeeeEEE
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL---------ATHLA-ERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~---------~~~Lc-~k~~i~k~f~V~~yPTl~  221 (658)
                      ..+..+|.|||+||++|++..|..++++++++  ..|..|+.++...         ...+. ..++.   +.|.++||.+
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iPTt~  123 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTPATF  123 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCCeEE
Confidence            45566999999999999999999999998873  4555666653210         01122 22311   0288999999


Q ss_pred             EcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          222 AFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      ++...+.  .....+.|..+.+.+.+.+.+
T Consensus       124 LID~~G~--~i~~~~~G~~s~~~l~~~I~~  151 (153)
T TIGR02738       124 LVNVNTR--KAYPVLQGAVDEAELANRMDE  151 (153)
T ss_pred             EEeCCCC--EEEEEeecccCHHHHHHHHHH
Confidence            9965322  012356899999988877654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3e-07  Score=89.69  Aligned_cols=87  Identities=20%  Similarity=0.264  Sum_probs=69.1

Q ss_pred             EEe-cCCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCCCCcccce
Q 006171          139 NVV-TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       139 ~~L-t~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      .-+ +.+.++..+  +....|+|+||+-|.+.|.+++|.|.+++.++.... ++|+||.+   ...+.+++|+++-.=.-
T Consensus       127 kyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---rfpd~a~kfris~s~~s  203 (265)
T KOG0914|consen  127 KYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---RFPDVAAKFRISLSPGS  203 (265)
T ss_pred             eeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec---cCcChHHheeeccCccc
Confidence            344 344455555  577899999999999999999999999999997655 99999999   55568889886433334


Q ss_pred             eeeeEEEEcCCCCC
Q 006171          215 RGLPSLVAFPPGCK  228 (658)
Q Consensus       215 ~~yPTl~~f~~g~~  228 (658)
                      +..||+++|.+|..
T Consensus       204 rQLPT~ilFq~gkE  217 (265)
T KOG0914|consen  204 RQLPTYILFQKGKE  217 (265)
T ss_pred             ccCCeEEEEccchh
Confidence            58999999999864

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.30  E-value=1.1e-06  Score=81.01  Aligned_cols=70  Identities=11%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchh---------------------hhHHHhhCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL---------------------ATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~---------------------~~~Lc~k~~  207 (658)
                      .++++||.||++||++|++..|.+.++.+++...   +.|..|+.+....                     ...+++.++
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            4679999999999999999999999999988643   3566666653311                     134666676


Q ss_pred             CCcccceeeeeEEEEcCCCC
Q 006171          208 IGQIFFRRGLPSLVAFPPGC  227 (658)
Q Consensus       208 i~k~f~V~~yPTl~~f~~g~  227 (658)
                            |.++||++++..++
T Consensus        97 ------v~~~P~~~lid~~G  110 (131)
T cd03009          97 ------IEGIPTLIILDADG  110 (131)
T ss_pred             ------CCCCCEEEEECCCC
Confidence                  88999999997443

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.28  E-value=1.5e-06  Score=97.61  Aligned_cols=91  Identities=20%  Similarity=0.090  Sum_probs=66.9

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc-----cc-h-------------------hhhHHHh
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-----DI-R-------------------LATHLAE  204 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~-----e~-~-------------------~~~~Lc~  204 (658)
                      ..+++++|.|||+||++|++..|.+++++++++.. +.|..|+.+     ++ .                   ....+++
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak  133 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ  133 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence            46789999999999999999999999999988632 344333321     00 0                   1223666


Q ss_pred             hCCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          205 RKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       205 k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      .++      |+++||++++ ++|..    ...+.|..+.+.|..++..
T Consensus       134 ~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        134 SLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHH
Confidence            666      8999999665 56643    4677899999999999874

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=6.5e-07  Score=89.59  Aligned_cols=67  Identities=25%  Similarity=0.250  Sum_probs=59.2

Q ss_pred             ccCcccccCccC---CCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        36 ~~d~Y~iLgv~~---~a~~~eIk~ayr~l~~~~HPD~~-----~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ..|+|.+||++.   .++..+|.++.++.+.+||||+.     .++.+-|..|++||++|+|+.+|..||.--.+
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~  116 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD  116 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence            569999999985   58899999999999999999975     35678899999999999999999999976444

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.24  E-value=1.8e-06  Score=79.97  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccch-hh---------------------hHHHhhC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIR-LA---------------------THLAERK  206 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~-~~---------------------~~Lc~k~  206 (658)
                      .+++++|.||++||++|+...|.++++++.++..   +.|..|++++.. ..                     ..+++.+
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            4689999999999999999999999999988753   367677776432 11                     1234444


Q ss_pred             CCCcccceeeeeEEEEcCCCC
Q 006171          207 PIGQIFFRRGLPSLVAFPPGC  227 (658)
Q Consensus       207 ~i~k~f~V~~yPTl~~f~~g~  227 (658)
                      +      |.++||++++..++
T Consensus        96 ~------v~~iPt~~lid~~G  110 (132)
T cd02964          96 K------VEGIPTLVVLKPDG  110 (132)
T ss_pred             C------CCCCCEEEEECCCC
Confidence            4      99999999996543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.24  E-value=1.4e-06  Score=76.80  Aligned_cols=69  Identities=17%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhh-cccceeeeecccc--hhh------------------hHHHhhCCCCcc
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDI--RLA------------------THLAERKPIGQI  211 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~-g~~~vg~Vdc~e~--~~~------------------~~Lc~k~~i~k~  211 (658)
                      +++++|.||++||++|+...+.+.++.++++ ..+.+..|+++.+  ...                  ..+++.++    
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   94 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG----   94 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC----
Confidence            6899999999999999999999999999986 3458999999853  111                  23556666    


Q ss_pred             cceeeeeEEEEcCCCC
Q 006171          212 FFRRGLPSLVAFPPGC  227 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~  227 (658)
                        +.++|+++++.+++
T Consensus        95 --~~~~P~~~l~d~~g  108 (116)
T cd02966          95 --VRGLPTTFLIDRDG  108 (116)
T ss_pred             --cCccceEEEECCCC
Confidence              88999998886443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.21  E-value=1.3e-06  Score=80.14  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-h-------------------hhhHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R-------------------LATHLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~-------------------~~~~Lc~k~~i~k~  211 (658)
                      .+++++|.||++||++|++..|.++++++...  +.|..|+.++. .                   ....+++.++    
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~----   97 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG----   97 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC----
Confidence            46899999999999999999999999987752  44555553211 0                   1123555555    


Q ss_pred             cceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHH
Q 006171          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV  245 (658)
Q Consensus       212 f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~L  245 (658)
                        |.++|+.+++ ++|..    ...|.|..+.+.|
T Consensus        98 --v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~  126 (127)
T cd03010          98 --VYGVPETFLIDGDGII----RYKHVGPLTPEVW  126 (127)
T ss_pred             --CCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence              8899965555 56643    4567788876654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.16  E-value=4.9e-06  Score=71.95  Aligned_cols=77  Identities=13%  Similarity=0.081  Sum_probs=60.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      .+.+-+..|++|||++|....+.+++++.+. +.+.+..+|.++.   ..++++++      |.++||+++  +|.    
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~---~e~a~~~~------V~~vPt~vi--dG~----   74 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALF---QDEVEERG------IMSVPAIFL--NGE----   74 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhC---HHHHHHcC------CccCCEEEE--CCE----
Confidence            3456788899999999999999999999765 4578999998844   45899999      889999975  553    


Q ss_pred             CcccccCCCCHhHHH
Q 006171          232 CMTRFEGELSVDAVT  246 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv  246 (658)
                        ..+.|..+.+.++
T Consensus        75 --~~~~G~~~~~e~~   87 (89)
T cd03026          75 --LFGFGRMTLEEIL   87 (89)
T ss_pred             --EEEeCCCCHHHHh
Confidence              3456766666654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.15  E-value=1.8e-05  Score=71.61  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe--CCCCCCcHHHHHHHHhhcc---CceEEEEEecc---cccHhHHhhcCCC--CC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYWA---YASFAFVLWRE---EESSIWWNTFEVE--SA  331 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~--~~~~~~~~~~~~~A~~~~~---~~~f~~v~~~~---~~s~~l~~~f~V~--~~  331 (658)
                      +++.+ +++++....  .+.|-|+.  +-|.. .|.++.+|.+|..   .+.++.|...+   .+..+|+++|+|+  ++
T Consensus         6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy   81 (116)
T cd03007           6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY   81 (116)
T ss_pred             CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence            44444 566765432  35555666  54433 4777888877643   46677776532   2347899999999  89


Q ss_pred             CEEEEEeCCC-CCeeeecCC-CChHHHHHHHHhh
Q 006171          332 PAIVFLKDPG-VKPVVYYGS-FNNSRLSEVMEQN  363 (658)
Q Consensus       332 Ptlvlfk~~~-~~p~~y~g~-~~~~~L~~fi~~~  363 (658)
                      |||.+|++++ ..|..|.|. .+.+.|.+||+++
T Consensus        82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            9999999873 467789996 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.09  E-value=8.8e-06  Score=75.19  Aligned_cols=101  Identities=9%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             EecCCCCCccccCCCcEEEEEecc--CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          140 VVTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       140 ~Lt~~nF~~~v~~~~~~lV~FYap--wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .++..+.+..+......++.|-.+  -+..+...+=+.+++++++.+. +++++||+++++   .|+.+||      |++
T Consensus        21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~---~LA~~fg------V~s   91 (132)
T PRK11509         21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE---AIGDRFG------VFR   91 (132)
T ss_pred             ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH---HHHHHcC------Ccc
Confidence            355667777776666666666654  3667888899999999999744 799999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      +|||++|++|..    ...+.|.++.+.+.+|+.+.+
T Consensus        92 iPTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~L  124 (132)
T PRK11509         92 FPATLVFTGGNY----RGVLNGIHPWAELINLMRGLV  124 (132)
T ss_pred             CCEEEEEECCEE----EEEEeCcCCHHHHHHHHHHHh
Confidence            999999999965    467789999999999998773

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.03  E-value=4.4e-05  Score=69.79  Aligned_cols=94  Identities=15%  Similarity=0.218  Sum_probs=67.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeCC------CC--CCcHHHHHHHHhh--ccCceEEEEEecccccHhHHhhcCCCCC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSKT------GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA  331 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~~------~~--~~~~~~~~~A~~~--~~~~~f~~v~~~~~~s~~l~~~f~V~~~  331 (658)
                      +++.+ +++.+...  ..+.|++|...      |.  .+.|.+..+|..+  .+.+.|+.|....  ...|+++|+|.+.
T Consensus        14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i   88 (120)
T cd03065          14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE   88 (120)
T ss_pred             CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence            34444 45555432  34667777431      33  3456666777777  6678888886543  4789999999999


Q ss_pred             CEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      |||++|+++.  ++.|.|..+.+.|.+|+++
T Consensus        89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~  117 (120)
T cd03065          89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD  117 (120)
T ss_pred             cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence            9999999874  4559999999999999975

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=6.2e-06  Score=80.83  Aligned_cols=55  Identities=18%  Similarity=0.405  Sum_probs=48.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHH-HcCCh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYE-LLTDP   90 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye-~L~d~   90 (658)
                      -..||.+|||..+|+..+++.||.+|++++|||...  .++++|.+|.+||. +|+.-
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            347999999999999999999999999999999654  56788999999999 77643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=4.6e-06  Score=96.12  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=47.4

Q ss_pred             ccCcccccCccCC----CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCC
Q 006171           36 PPSHYDALGIKPY----SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTD   89 (658)
Q Consensus        36 ~~d~Y~iLgv~~~----a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d   89 (658)
                      ..+-|+||.|+-+    -..+.||++|++|+.+|||||||+..++|.++++|||.|+.
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence            4467999998743    34589999999999999999999999999999999999983

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.02  E-value=6.3e-06  Score=80.18  Aligned_cols=94  Identities=21%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-hhhhHHHhhCC-------------CCcccceeee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKP-------------IGQIFFRRGL  217 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~~~~~Lc~k~~-------------i~k~f~V~~y  217 (658)
                      .+++++|.||++||++|++..|.++++++.  + ..+..|+-++. ......+++++             +.+.|.+.++
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~  138 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA  138 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence            578999999999999999999999988753  2 45555554321 11112222211             1234558999


Q ss_pred             eEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          218 PSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+.+++ ++|..    ...+.|..+.+++.+++.+.
T Consensus       139 P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~  170 (173)
T TIGR00385       139 PETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA  170 (173)
T ss_pred             CeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence            965555 66643    35567999999999988765

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.99  E-value=1.1e-05  Score=72.83  Aligned_cols=98  Identities=8%  Similarity=0.175  Sum_probs=71.1

Q ss_pred             CCCccc----cCCCcEEEEEeccCCCCCCCChH-HH--HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       145 nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P-~w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      +|++.+    ..+++.+|.||++||..|+.+.. .|  +++.+.++....+-++|.++. ....+++.++      +.++
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~------~~~~   77 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYK------VDKY   77 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhC------ccCC
Confidence            455555    36899999999999999999875 45  345566655444555565532 3345888888      8899


Q ss_pred             eEEEEcCC-CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          218 PSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f~~-g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |++.++.+ ++.   ....+.|..+.+.+.+-+.+.
T Consensus        78 P~~~~i~~~~g~---~l~~~~G~~~~~~f~~~L~~~  110 (114)
T cd02958          78 PHIAIIDPRTGE---VLKVWSGNITPEDLLSQLIEF  110 (114)
T ss_pred             CeEEEEeCccCc---EeEEEcCCCCHHHHHHHHHHH
Confidence            99999975 332   356778999999999888765

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.98  E-value=1.9e-05  Score=68.79  Aligned_cols=96  Identities=25%  Similarity=0.402  Sum_probs=69.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeCC----CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSKT----GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~~----~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ +++.+..  .+++.+|+|...    |....|.+..++..+.+.+.|+.+...  +...++++|+|.++|++++|
T Consensus         4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred             CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence            44444 5555553  245666666432    222456677788888777778887643  34789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++... ..|.|.++.+.|.+||++|
T Consensus        79 ~~g~~~-~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGKEV-KRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred             ECCcEE-EEEECCCCHHHHHHHHHcC
Confidence            987543 3689999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.98  E-value=1.4e-05  Score=78.75  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCC-------------Ccccceeee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPI-------------GQIFFRRGL  217 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i-------------~k~f~V~~y  217 (658)
                      .+++++|.||++||++|++..|.++++++.  + +.|..|+-++++ ......++++.             .+.|.|.++
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~  143 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  143 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence            578999999999999999999999988652  2 356667654322 11112222211             124559999


Q ss_pred             eEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          218 PSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+.+++ ++|..    ...+.|..+.+.+.+.+...
T Consensus       144 P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~  175 (185)
T PRK15412        144 PETFLIDGNGII----RYRHAGDLNPRVWESEIKPL  175 (185)
T ss_pred             CeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence            975555 56643    46678999988888887665

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.97  E-value=1e-05  Score=76.41  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=53.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc--------cceeeeecccchh-hhHHHhhCC---------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRL-ATHLAERKP---------------  207 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~--------~~vg~Vdc~e~~~-~~~Lc~k~~---------------  207 (658)
                      .+++++|.|+|+||+.|++..|...++.+++++.        +.|-.|+.+++.. ..+..++.+               
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            4689999999999999999999999998877542        4666777663321 122222222               


Q ss_pred             CCcccceeeeeEEEEcCCCCC
Q 006171          208 IGQIFFRRGLPSLVAFPPGCK  228 (658)
Q Consensus       208 i~k~f~V~~yPTl~~f~~g~~  228 (658)
                      +.+.|.|.++||++++.+.+.
T Consensus       104 l~~~y~v~~iPt~vlId~~G~  124 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGD  124 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCc
Confidence            112445889999999975543

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.92  E-value=9.6e-06  Score=70.29  Aligned_cols=74  Identities=16%  Similarity=0.202  Sum_probs=50.3

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccch-hhhHHHhhCC---------------CCcccce
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIR-LATHLAERKP---------------IGQIFFR  214 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~-~~~~Lc~k~~---------------i~k~f~V  214 (658)
                      +++++|.|||+||++|++..|...++.+.++  +.+.|..|++++.. ...+..++.+               +.+.|.|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            4789999999999999999999999999998  55688888887431 1111222221               1124448


Q ss_pred             eeeeEEEEcCCC
Q 006171          215 RGLPSLVAFPPG  226 (658)
Q Consensus       215 ~~yPTl~~f~~g  226 (658)
                      +++|+++++.++
T Consensus        81 ~~iP~~~lld~~   92 (95)
T PF13905_consen   81 NGIPTLVLLDPD   92 (95)
T ss_dssp             TSSSEEEEEETT
T ss_pred             CcCCEEEEECCC
Confidence            888888887654

...

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.87  E-value=6.1e-05  Score=66.42  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC-h
Q 006171          279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN-N  353 (658)
Q Consensus       279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~-~  353 (658)
                      ++.+|.| .+.   +....|.+..++..+.+.+.|+.+....  ..+++++|+|.++||+++|++++..+..|.|..+ .
T Consensus        20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~   97 (104)
T cd03004          20 EPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDA   97 (104)
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCH
Confidence            3555544 432   2335677788888887777788775332  3789999999999999999987566777999886 8


Q ss_pred             HHHHHHH
Q 006171          354 SRLSEVM  360 (658)
Q Consensus       354 ~~L~~fi  360 (658)
                      +.|.+|+
T Consensus        98 ~~l~~~i  104 (104)
T cd03004          98 DSILEFI  104 (104)
T ss_pred             HHHHhhC
Confidence            8888774

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.86  E-value=2.6e-05  Score=76.08  Aligned_cols=88  Identities=11%  Similarity=0.077  Sum_probs=62.6

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch----------hhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~----------~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      +|.||+.||++|++..|..++++++++  +.|-.|+.++..          ....+.+.++.-    +.++||.+++...
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~----~~~iPttfLId~~  146 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNI----PVATPTTFLVNVN  146 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCC----CCCCCeEEEEeCC
Confidence            788999999999999999999999974  455556665331          112244556511    2699999999554


Q ss_pred             CCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          227 CKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       227 ~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +.  .....+.|..+.+.|.+.+.+.
T Consensus       147 G~--i~~~~~~G~~~~~~L~~~I~~l  170 (181)
T PRK13728        147 TL--EALPLLQGATDAAGFMARMDTV  170 (181)
T ss_pred             Cc--EEEEEEECCCCHHHHHHHHHHH
Confidence            43  1123578999999998877665

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.85  E-value=1.4e-05  Score=89.30  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=71.5

Q ss_pred             CCCccccC--CCcEEEEEeccCCCCCCCChHH-HHHHHHHhhcc-cceeeeecc-cchhhhHHHhhCCCCcccceeeeeE
Q 006171          145 DFPSIFHD--SKPWLIQVYSDGSYLCGQFSGA-WKTIAALLEGI-ANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       145 nF~~~v~~--~~~~lV~FYapwC~~Ck~l~P~-w~~~A~~l~g~-~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      ..++.+.+  +++++++|||+||-.||.+++. +.+.....+-. +..-++|-+ +++...++-++++      +-|.|+
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~------~~G~P~  537 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG------VFGVPT  537 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcC------CCCCCE
Confidence            34455533  3599999999999999999873 33222222222 377788887 4556667888888      889999


Q ss_pred             EEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       220 l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +++|..++.+   +..-.|..+++.+.+++++.
T Consensus       538 ~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         538 YLFFGPQGSE---PEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             EEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence            9999966543   23368999999999998775

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.84  E-value=2.8e-05  Score=95.42  Aligned_cols=91  Identities=12%  Similarity=0.109  Sum_probs=67.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc---c--c-hh------------------hhHHHhhC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG---D--I-RL------------------ATHLAERK  206 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~---e--~-~~------------------~~~Lc~k~  206 (658)
                      .+++++|.|||+||++|++..|.++++++++++. +.|..|.+.   +  . ..                  ...+.+++
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            4789999999999999999999999999999765 345555431   1  0 00                  11244444


Q ss_pred             CCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       207 ~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +      |.++||++++ ++|..    ...+.|....+.|.+++.+.
T Consensus       499 ~------V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~  535 (1057)
T PLN02919        499 G------VSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAA  535 (1057)
T ss_pred             C------CCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHH
Confidence            4      9999999999 56643    45678988889998888765

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.83  E-value=7.1e-05  Score=67.74  Aligned_cols=81  Identities=11%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             CCcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHH-hhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171          277 PHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWW-NTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (658)
Q Consensus       277 ~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~-~~f~V~~~Ptlvlfk~~~~~p~~y~g~~  351 (658)
                      .+++.+|.| .+   .+....|.+..+|..+++.+.|+.|....  ...++ ++|+|.++|||++|+++. .+..|.|..
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~  104 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPM  104 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcccCEEEEEECCc-cceEEeCCC
Confidence            445555555 32   23445788888999888777788875322  35688 589999999999998764 577899999


Q ss_pred             ChHHHHHHH
Q 006171          352 NNSRLSEVM  360 (658)
Q Consensus       352 ~~~~L~~fi  360 (658)
                      +.+.|..|+
T Consensus       105 ~~~~i~~~~  113 (113)
T cd03006         105 RAPYMEKFV  113 (113)
T ss_pred             CHHHHHhhC
Confidence            999888763

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.82  E-value=3.2e-05  Score=59.58  Aligned_cols=63  Identities=24%  Similarity=0.360  Sum_probs=48.7

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.||++||++|+++.+.+.++ ....+...+..++|++..........++      +.++|+++++.++
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence            5789999999999999999998 4455566999999995543222223556      7799999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=97.77  E-value=0.00012  Score=64.82  Aligned_cols=92  Identities=11%  Similarity=0.153  Sum_probs=65.4

Q ss_pred             hhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC--
Q 006171          268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG--  341 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~--  341 (658)
                      ++..+..  .+++.+|.| .+   .|....+.+..++..+.+.+.|+.+.........++++|+|.++|++++|+++.  
T Consensus        10 ~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~   87 (109)
T cd03002          10 FDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA   87 (109)
T ss_pred             HHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence            4555543  245455555 33   233456778888888877777777765443356799999999999999999875  


Q ss_pred             --CCeeeecCCCChHHHHHHHH
Q 006171          342 --VKPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       342 --~~p~~y~g~~~~~~L~~fi~  361 (658)
                        ..+..|.|..+.+.|.+||.
T Consensus        88 ~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          88 SKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             cccccccccCccCHHHHHHHhC
Confidence              34566899999999999873

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.74  E-value=0.00014  Score=63.79  Aligned_cols=78  Identities=17%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171          279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (658)
Q Consensus       279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~  354 (658)
                      ++.+|.| .+.   +....|.+..+|..+.+.+.|+.|...+  ...++++|+|.++||+++|+++. ....|.|..+.+
T Consensus        19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~   95 (101)
T cd03003          19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDRSKE   95 (101)
T ss_pred             CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCCC-CcccCCCCCCHH
Confidence            4555555 332   2334678888999887777777776433  47899999999999999998764 455689999988


Q ss_pred             HHHHH
Q 006171          355 RLSEV  359 (658)
Q Consensus       355 ~L~~f  359 (658)
                      .|.+|
T Consensus        96 ~l~~f  100 (101)
T cd03003          96 SLVKF  100 (101)
T ss_pred             HHHhh
Confidence            88876

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.72  E-value=2.6e-05  Score=66.15  Aligned_cols=64  Identities=17%  Similarity=0.215  Sum_probs=46.9

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~  224 (658)
                      .+++++||.||++||+.|+.+....   .++.+.+........||.++....  .  ++.      ..++|+++++.
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~--~--~~~------~~~~P~~~~ld   81 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN--A--QFD------RQGYPTFFFLD   81 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH--H--HHH------HCSSSEEEEEE
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh--H--HhC------CccCCEEEEeC
Confidence            3789999999999999999998776   455555666678888888744321  1  111      24799999874

...

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.69  E-value=0.00022  Score=61.96  Aligned_cols=90  Identities=21%  Similarity=0.287  Sum_probs=63.9

Q ss_pred             hhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCee
Q 006171          266 SMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV  345 (658)
Q Consensus       266 ~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~  345 (658)
                      +.++.|+...  ..++|.+|.+.+......++.+|..+++.+.|+.+.     +..+.+++++. .|++++|++.+..++
T Consensus         8 ~~l~~~~~~~--~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~~~~   79 (97)
T cd02981           8 EELEKFLDKD--DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEEEPV   79 (97)
T ss_pred             HHHHHHhccC--CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCcccCCc
Confidence            3356666432  234444665433333456677899898888888874     35677888875 589999998777788


Q ss_pred             eecCCCChHHHHHHHHhh
Q 006171          346 VYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       346 ~y~g~~~~~~L~~fi~~~  363 (658)
                      .|.|.++.+.|.+||..|
T Consensus        80 ~y~g~~~~~~l~~fi~~~   97 (97)
T cd02981          80 EYDGEFTEESLVEFIKDN   97 (97)
T ss_pred             cCCCCCCHHHHHHHHHhC
Confidence            899998889999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.67  E-value=6.8e-05  Score=60.99  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      +..|+++||++|+++.+.+++.      .+.+..+|.+++.. ...+++.++      +.++|++.+.  |.       .
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~   60 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I   60 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence            5679999999999988877652      24778888885433 334677788      7799999985  32       2


Q ss_pred             ccCCCCHhHHHHHH
Q 006171          236 FEGELSVDAVTDWF  249 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv  249 (658)
                      ..| .+.+.|.+|+
T Consensus        61 ~~g-~~~~~i~~~i   73 (74)
T TIGR02196        61 IVG-FDPEKLDQLL   73 (74)
T ss_pred             Eee-CCHHHHHHHh
Confidence            455 4677777775

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.66  E-value=0.00022  Score=63.49  Aligned_cols=93  Identities=12%  Similarity=0.162  Sum_probs=61.5

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhcc------CceEEEEEecccccHhHHhhcCCCCC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA------YASFAFVLWREEESSIWWNTFEVESA  331 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~------~~~f~~v~~~~~~s~~l~~~f~V~~~  331 (658)
                      ++.++ +++.++   .+++.+|.|. +   .+....|.+..++..+++      .+.|+.+....  ..+++++|+|.++
T Consensus         6 l~~~~-f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~   79 (108)
T cd02996           6 LTSGN-IDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKY   79 (108)
T ss_pred             cCHhh-HHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcC
Confidence            44444 455553   2346566553 3   233456777777766532      24556664322  3789999999999


Q ss_pred             CEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ||+++|+++......|.|..+.+.|.+||
T Consensus        80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          80 PTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            99999998764456689999999998885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.65  E-value=0.00016  Score=71.46  Aligned_cols=91  Identities=18%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCC-----------CcccceeeeeEE
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI-----------GQIFFRRGLPSL  220 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i-----------~k~f~V~~yPTl  220 (658)
                      .+++++|.||++||+.|++..|...++.+...  ..+..|+.++.....+.++++++           .+.|.|.+.|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            46799999999999999999999999876542  24444443322222233333332           134558899987


Q ss_pred             EEcCCCCCCCCCcccccCCC-CHhHHHHHH
Q 006171          221 VAFPPGCKSSDCMTRFEGEL-SVDAVTDWF  249 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y~G~r-s~~~Lv~fv  249 (658)
                      +++-+.+.     ..+.|.. +.+.+-+.+
T Consensus       151 ~lID~~G~-----I~~~g~~~~~~~le~ll  175 (189)
T TIGR02661       151 VLLDQDGK-----IRAKGLTNTREHLESLL  175 (189)
T ss_pred             EEECCCCe-----EEEccCCCCHHHHHHHH
Confidence            77654333     4455543 334444444

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=97.62  E-value=9.6e-05  Score=67.78  Aligned_cols=42  Identities=10%  Similarity=-0.062  Sum_probs=35.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeec
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL  193 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc  193 (658)
                      .+++++|.||+.||+.|.+..|.++++.++++.. +.+..|++
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence            4689999999999999999999999999999754 35556654

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.55  E-value=0.0006  Score=60.37  Aligned_cols=95  Identities=13%  Similarity=0.186  Sum_probs=67.4

Q ss_pred             eccchhhhhhhh-hcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC
Q 006171          262 YTKESMGKNFLA-KTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP  340 (658)
Q Consensus       262 it~~~~~~~Fl~-~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~  340 (658)
                      +++.+.++.|+. ..  ..++|.+|.+........+..+|..+|+.+.|+...     ...+.+.+++. .|+|+++++.
T Consensus         5 i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~   76 (102)
T cd03066           5 INSERELQAFENIED--DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF   76 (102)
T ss_pred             cCCHHHHHHHhcccC--CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC
Confidence            434444788885 33  234444665543333445677888898888887764     34577888875 6999999886


Q ss_pred             CCCeeee-cCCCChHHHHHHHHhhc
Q 006171          341 GVKPVVY-YGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       341 ~~~p~~y-~g~~~~~~L~~fi~~~~  364 (658)
                      ++.++.| .|.++.+.|.+||..++
T Consensus        77 ~e~~~~y~~g~~~~~~l~~fi~~~~  101 (102)
T cd03066          77 MEEPVTIPDKPYSEEELVDFVEEHK  101 (102)
T ss_pred             CCCCcccCCCCCCHHHHHHHHHHhc
Confidence            6677779 88889999999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.54  E-value=0.00078  Score=58.84  Aligned_cols=67  Identities=12%  Similarity=0.090  Sum_probs=53.6

Q ss_pred             CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ..+.+..++..+.+.+.|+.+...  +...++++|+|.++|++++|+++...+..|.|..+.+.|.+|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          36 LAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             HhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence            456677778777777777777532  2467999999999999999998756677799999999999986

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.51  E-value=0.00042  Score=70.73  Aligned_cols=98  Identities=9%  Similarity=-0.064  Sum_probs=65.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc--------cchhhhHHH-hhCCCCc-----------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLA-ERKPIGQ-----------  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~--------e~~~~~~Lc-~k~~i~k-----------  210 (658)
                      .+++++|.||++||+.|....|.++++.+++++.+ .|..|+|+        +.....+.+ +++++.=           
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            46899999999999999999999999999998764 88888884        112233443 4443210           


Q ss_pred             ----ccc-------------eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 ----IFF-------------RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ----~f~-------------V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                          .|.             |.+.||..++-..++   ....|.|..+.+.|...+++.
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk---Vv~~~~G~~~~~~le~~I~~l  233 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK---VVERYPPTTSPFQIEKDIQKL  233 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCc---EEEEECCCCCHHHHHHHHHHH
Confidence                011             223466666643332   346677887777777776654

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.50  E-value=0.00024  Score=64.07  Aligned_cols=105  Identities=18%  Similarity=0.227  Sum_probs=73.5

Q ss_pred             EEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHH-hhcc--cceeeeeccc--chhhhHHHhhCCCCcccc
Q 006171          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEGI--ANTGMVELGD--IRLATHLAERKPIGQIFF  213 (658)
Q Consensus       139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~-l~g~--~~vg~Vdc~e--~~~~~~Lc~k~~i~k~f~  213 (658)
                      +.|+.-+|+++|...+.+||.|=.-.  +--.-.-+|.++|++ .+..  .-||.|...+  ++...+|+++|++.    
T Consensus         7 v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~----   80 (126)
T PF07912_consen    7 VPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID----   80 (126)
T ss_dssp             EEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S----
T ss_pred             eeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC----
Confidence            78999999999998999999996432  112334689999944 3332  2566666542  23345699999954    


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccc--cCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y--~G~rs~~~Lv~fv~k~  252 (658)
                      -..||.+++|..+..   .+..|  .|+.++++|..|+.++
T Consensus        81 ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~  118 (126)
T PF07912_consen   81 KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN  118 (126)
T ss_dssp             CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred             cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence            368999999996543   57888  8999999999999876

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=97.48  E-value=0.0004  Score=62.10  Aligned_cols=97  Identities=9%  Similarity=0.130  Sum_probs=62.0

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEecccccHhHHh-hcCCCCCCEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV  335 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~-~f~V~~~Ptlv  335 (658)
                      ++..+ ++.........++.++.| .+   .|....+.+..++..|++. +.++.+.... +...++. .|+|..+||++
T Consensus         6 ~~~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~~Pti~   83 (109)
T cd02993           6 LSRAE-IEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-EQREFAKEELQLKSFPTIL   83 (109)
T ss_pred             ccHHH-HHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-cchhhHHhhcCCCcCCEEE
Confidence            34333 444443222334555555 33   2334467777788888753 5666665322 1245676 59999999999


Q ss_pred             EEeCCCCCeeeecCC-CChHHHHHHH
Q 006171          336 FLKDPGVKPVVYYGS-FNNSRLSEVM  360 (658)
Q Consensus       336 lfk~~~~~p~~y~g~-~~~~~L~~fi  360 (658)
                      +|++++..+..|.|. .+..+|..||
T Consensus        84 ~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          84 FFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEcCCCCCceeccCCCCCHHHHHhhC
Confidence            999887777789985 7888888774

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.00028  Score=73.01  Aligned_cols=97  Identities=18%  Similarity=0.297  Sum_probs=71.4

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +|..++....+... ...|+++.| .+   .|....|.+..++.+|++.+.++.|+...  ++.+..+|||.+.||+++|
T Consensus        28 vT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--~p~vAaqfgiqsIPtV~af  104 (304)
T COG3118          28 VTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--EPMVAAQFGVQSIPTVYAF  104 (304)
T ss_pred             chHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--chhHHHHhCcCcCCeEEEe
Confidence            45555444444433 344555555 33   33446788888999999999988885322  4789999999999999999


Q ss_pred             eCCCCCeee-ecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVV-YYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~-y~g~~~~~~L~~fi~~~  363 (658)
                      ++|  .|+. |.|....+.++.|+..+
T Consensus       105 ~dG--qpVdgF~G~qPesqlr~~ld~~  129 (304)
T COG3118         105 KDG--QPVDGFQGAQPESQLRQFLDKV  129 (304)
T ss_pred             eCC--cCccccCCCCcHHHHHHHHHHh
Confidence            987  5664 89998888999999874

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.42  E-value=0.00027  Score=61.33  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-cchhhhHHHhhCCCCcccceeeeeEEEEcCCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~  227 (658)
                      +.+.+|.||++||++|+.+.|...++++++.....+..+|.. .++.   +...++..    +..+|++.++.++.
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~----~~~~p~~~~~~~~~  100 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGVA----VRSIPTLLLFKDGK  100 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhhh----hccCCeEEEEeCcc
Confidence            778999999999999999999999999999876678888885 3332   44554411    56889999888774

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.42  E-value=0.00081  Score=59.78  Aligned_cols=91  Identities=14%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             cchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE------
Q 006171          264 KESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL------  337 (658)
Q Consensus       264 ~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf------  337 (658)
                      +.+.++.|+..  ...++|-+|.+..+.....+..+|..+|+.+.|+...     ...+.+++++  .|++++|      
T Consensus         7 s~~~l~~f~~~--~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~~~   77 (104)
T cd03069           7 TEAEFEKFLSD--DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPRLS   77 (104)
T ss_pred             CHHHHHHHhcc--CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechhhh
Confidence            33336777753  2334444666544334456677888888888888764     3567888998  6889999      


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +..+...++|.|+++.+.|.+||..+
T Consensus        78 ~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          78 NKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             cccCcccccccCcCCHHHHHHHHHhh
Confidence            44556667799999989999999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>smart00594 UAS UAS domain

Probab=97.41  E-value=0.00034  Score=64.09  Aligned_cols=98  Identities=11%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             CCCccc----cCCCcEEEEEeccCCCCCCCChH-HHH--HHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       145 nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P-~w~--~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      +|++.+    ..+++.+|.|+++||..|+.+.- +|.  ++.+.++....+-.+|.+... ...+++.++      +.+|
T Consensus        15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~------~~~~   87 (122)
T smart00594       15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYK------LDSF   87 (122)
T ss_pred             CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcC------cCCC
Confidence            455554    36789999999999999999875 242  344555544455556655332 345899988      8899


Q ss_pred             eEEEEcCCCCCC--CCCcccccCCCCHhHHHHHH
Q 006171          218 PSLVAFPPGCKS--SDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       218 PTl~~f~~g~~~--~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      |++.++.+....  ........|..+.+.|+.++
T Consensus        88 P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       88 PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            999999544310  01234568999999998875

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.39  E-value=0.0001  Score=68.05  Aligned_cols=73  Identities=12%  Similarity=0.087  Sum_probs=44.2

Q ss_pred             CCCccc----cCCCcEEEEEeccCCCCCCCChHH-H--HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGA-W--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       145 nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P~-w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      +|++.+    .++++++|.||++||++|+.|... |  .++++.++....+..++.+.  ...++.. .       ..++
T Consensus        11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~--td~~~~~-~-------g~~v   80 (130)
T cd02960          11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHET--TDKNLSP-D-------GQYV   80 (130)
T ss_pred             hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEecc--CCCCcCc-c-------Cccc
Confidence            566655    378999999999999999999875 3  23344443322222344331  1111111 1       3489


Q ss_pred             eEEEEcCCCC
Q 006171          218 PSLVAFPPGC  227 (658)
Q Consensus       218 PTl~~f~~g~  227 (658)
                      ||++++.+..
T Consensus        81 PtivFld~~g   90 (130)
T cd02960          81 PRIMFVDPSL   90 (130)
T ss_pred             CeEEEECCCC
Confidence            9999996554

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=97.39  E-value=0.0011  Score=57.62  Aligned_cols=83  Identities=18%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             CcEEEEEEe-CC---CCCCcHHHHHHHHhhcc--CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171          278 HKVKVIFFS-KT---GERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (658)
Q Consensus       278 ~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~  351 (658)
                      +++.++.|. +.   +....+.+..++..+..  .+.++.+..  .....++++|+|...|++++|++++. +..|.|..
T Consensus        13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~   89 (102)
T TIGR01126        13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGR   89 (102)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCC
Confidence            445566553 32   22335666677777765  355555542  22478999999999999999998765 77799999


Q ss_pred             ChHHHHHHHHhh
Q 006171          352 NNSRLSEVMEQN  363 (658)
Q Consensus       352 ~~~~L~~fi~~~  363 (658)
                      +.+.|.+||+++
T Consensus        90 ~~~~l~~~i~~~  101 (102)
T TIGR01126        90 DLEAIVEFVNEK  101 (102)
T ss_pred             CHHHHHHHHHhc
Confidence            999999999874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.36  E-value=0.00069  Score=75.49  Aligned_cols=100  Identities=10%  Similarity=0.131  Sum_probs=68.6

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      +++.+ ++..+.....+++.+|.| .+   .|....|.+..+|..|.+. +.|+.|..........+++|+|.++||+++
T Consensus       356 L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~  434 (463)
T TIGR00424       356 LSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF  434 (463)
T ss_pred             CCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence            55555 566664222445555544 33   2334567788888888654 667777644322233457899999999999


Q ss_pred             EeCCCCCeeeec-CCCChHHHHHHHHh
Q 006171          337 LKDPGVKPVVYY-GSFNNSRLSEVMEQ  362 (658)
Q Consensus       337 fk~~~~~p~~y~-g~~~~~~L~~fi~~  362 (658)
                      |+++...++.|. |..+.+.|..||+.
T Consensus       435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       435 FPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             EECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            999877888897 57899999999975

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=97.34  E-value=0.00059  Score=60.19  Aligned_cols=80  Identities=13%  Similarity=0.165  Sum_probs=57.3

Q ss_pred             CCcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+|.|. .   .|....|.+..++..|.+ +.|+.+...+ ....++++|+|.++||+++|+++  ....|.|..+
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~   92 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRT   92 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCC
Confidence            3456566553 2   234457888888888764 5555553220 34789999999999999999876  5667999999


Q ss_pred             hHHHHHHH
Q 006171          353 NSRLSEVM  360 (658)
Q Consensus       353 ~~~L~~fi  360 (658)
                      .+.|.+|+
T Consensus        93 ~~~l~~f~  100 (100)
T cd02999          93 LDSLAAFY  100 (100)
T ss_pred             HHHHHhhC
Confidence            99988885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.32  E-value=0.00053  Score=65.15  Aligned_cols=42  Identities=7%  Similarity=-0.154  Sum_probs=36.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~  194 (658)
                      .+++++|.|+|.||+ |..-.|.++++.+++++. +.|..|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            368999999999999 999999999999999754 377777764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.29  E-value=0.001  Score=66.27  Aligned_cols=57  Identities=7%  Similarity=0.109  Sum_probs=45.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc--------cchhhhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~--------e~~~~~~Lc~k~~i  208 (658)
                      .++++||.|+|.||+.|++-.|..+++.+++++.+ .|..|+|+        ........++++++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~  103 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI  103 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence            46899999999999999999999999999998764 88889884        22334556777663

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.27  E-value=0.0012  Score=62.78  Aligned_cols=42  Identities=14%  Similarity=-0.051  Sum_probs=37.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeec
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVEL  193 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc  193 (658)
                      .+++++|.|+|+||+.|++-.|...++.++++... .|..|+|
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            36789999999999999999999999999998654 8888887

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=97.25  E-value=0.002  Score=66.06  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=81.4

Q ss_pred             hhhhhhhcCCCcEEEEEEe---CCCCCCcHHHHHHHHhhccCceEEEEEeccccc-HhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS---KTGERASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~---~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s-~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      .++|+....+..|.|-|+.   .+|++..|.|..+...+++.-.-..|..-+|+. +.++.+|+|.++|||.+||.+  .
T Consensus        34 ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~  111 (468)
T KOG4277|consen   34 DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--H  111 (468)
T ss_pred             hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--e
Confidence            4678877777889888884   477888999988666555443334454456655 789999999999999999864  4


Q ss_pred             eeeecCCCChHHHHHHHHhhccCCCccccCcc
Q 006171          344 PVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT  375 (658)
Q Consensus       344 p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~  375 (658)
                      ...|.|..+.++|.+|...-.-+++-.+.+..
T Consensus       112 a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ  143 (468)
T KOG4277|consen  112 AIDYRGGREKDAIIEFAHRCAAAIIEPINENQ  143 (468)
T ss_pred             eeecCCCccHHHHHHHHHhcccceeeecChhH
Confidence            55699999999999999888888777776633

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.24  E-value=0.0027  Score=58.86  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             hhhhhhhcCCCcEEEEEEeCCCC------CCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC
Q 006171          268 GKNFLAKTGPHKVKVIFFSKTGE------RASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP  340 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~~~~------~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~  340 (658)
                      ++.|+....   ..|||+.+...      .....+..++.+|.+ .+.|+.|....  .+.|+.+|||.+.||+++|+++
T Consensus        27 ~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~LA~~fgV~siPTLl~FkdG  101 (132)
T PRK11509         27 LDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTGG  101 (132)
T ss_pred             HHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHHHHHcCCccCCEEEEEECC
Confidence            788886543   56777754321      124566778998863 47788886443  5789999999999999999987


Q ss_pred             CCCeeeecCCCChHHHHHHHHhhccCCCc
Q 006171          341 GVKPVVYYGSFNNSRLSEVMEQNKLQELP  369 (658)
Q Consensus       341 ~~~p~~y~g~~~~~~L~~fi~~~~~~~vP  369 (658)
                      .. .-...|..+.+.+.++|+...-.-.|
T Consensus       102 k~-v~~i~G~~~k~~l~~~I~~~L~~~~~  129 (132)
T PRK11509        102 NY-RGVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_pred             EE-EEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence            43 23467888999999999875444333

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00054  Score=59.83  Aligned_cols=49  Identities=24%  Similarity=0.206  Sum_probs=43.5

Q ss_pred             cccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCh
Q 006171           41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP   90 (658)
Q Consensus        41 ~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~   90 (658)
                      .||||+++++.+.||+|+|++....|||+. ++.-.-.+||+|+++|...
T Consensus        60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence            399999999999999999999999999987 5556677899999999754

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0012  Score=61.98  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=62.7

Q ss_pred             cEEEEEEeC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHH
Q 006171          279 KVKVIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (658)
Q Consensus       279 ~v~vl~f~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~  355 (658)
                      .|.|-|+..   .|+...|.+..++..|.+.+.|+.+++.+  ..+++.+|+|...||+++|++|+.. -.+.|..+.+.
T Consensus        63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~  139 (150)
T KOG0910|consen   63 PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQ  139 (150)
T ss_pred             CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHH
Confidence            344445532   33456788999999999999999887543  4789999999999999999987543 34778888888


Q ss_pred             HHHHHHhh
Q 006171          356 LSEVMEQN  363 (658)
Q Consensus       356 L~~fi~~~  363 (658)
                      |.++|++.
T Consensus       140 l~~~i~k~  147 (150)
T KOG0910|consen  140 LRSLIKKF  147 (150)
T ss_pred             HHHHHHHH
Confidence            99888763

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.15  E-value=0.00034  Score=57.76  Aligned_cols=57  Identities=14%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhh--CCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k--~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.|+++||++|+++.+.+++..-      .+-.+|.+++........+  ++      +.++|+| ++.+|
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g   60 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADG   60 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCC
Confidence            578999999999999988766532      3456787754432222222  25      7799998 46665

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.15  E-value=0.0022  Score=55.51  Aligned_cols=81  Identities=14%  Similarity=0.224  Sum_probs=56.4

Q ss_pred             CcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      .++.+|.| .+   .+....+.+..++..+.+.+.++.+....  ...++++|+|.++|++++|+++. ....+.|..+.
T Consensus        12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~   88 (96)
T cd02956          12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAGQ-PVDGFQGAQPE   88 (96)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCCE-EeeeecCCCCH
Confidence            34556655 33   23334666777887776666666665432  47899999999999999998543 33358898888


Q ss_pred             HHHHHHHH
Q 006171          354 SRLSEVME  361 (658)
Q Consensus       354 ~~L~~fi~  361 (658)
                      +.|.+|++
T Consensus        89 ~~l~~~l~   96 (96)
T cd02956          89 EQLRQMLD   96 (96)
T ss_pred             HHHHHHhC
Confidence            99988863

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.14  E-value=0.0032  Score=56.66  Aligned_cols=84  Identities=15%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             hhhhhhhcCCCcEEEEEEeCC------CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFSKT------GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~~------~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      ++.+++   .+.+.|++|...      +....|.+..+|..|.+.+.|+.+...+  .+.++.+|+|.+.||+++|+++.
T Consensus        20 ~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~sIPTli~fkdGk   94 (111)
T cd02965          20 LDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLRTPALLFFRDGR   94 (111)
T ss_pred             HHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCE
Confidence            556653   334667777533      1224678888999988777787876443  57899999999999999999863


Q ss_pred             CCeeeecCCCChHHHH
Q 006171          342 VKPVVYYGSFNNSRLS  357 (658)
Q Consensus       342 ~~p~~y~g~~~~~~L~  357 (658)
                       ......|..+.+.+.
T Consensus        95 -~v~~~~G~~~~~e~~  109 (111)
T cd02965          95 -YVGVLAGIRDWDEYV  109 (111)
T ss_pred             -EEEEEeCccCHHHHh
Confidence             222357877766543

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PLN02412 probable glutathione peroxidase

Probab=97.14  E-value=0.0019  Score=62.43  Aligned_cols=43  Identities=9%  Similarity=-0.072  Sum_probs=38.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~  194 (658)
                      .+++++|.||++||+.|++-.|...++.+++++.. .|..|+|+
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            35899999999999999999999999999998764 88888885

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=97.12  E-value=0.00042  Score=64.94  Aligned_cols=77  Identities=12%  Similarity=0.115  Sum_probs=54.7

Q ss_pred             CCCcEEEEEecc-CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCC------------Cccccee--
Q 006171          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRR--  215 (658)
Q Consensus       152 ~~~~~lV~FYap-wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i------------~k~f~V~--  215 (658)
                      .+++.+|.||+. ||++|+.-.|..+++++.++.. +.+..|+.+.+....+.++++++            .+.|.+.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            578899999999 9999999999999999887665 46666666644334444444332            2244477  


Q ss_pred             -------eeeEEEEcCCCCC
Q 006171          216 -------GLPSLVAFPPGCK  228 (658)
Q Consensus       216 -------~yPTl~~f~~g~~  228 (658)
                             ++|+++++-..++
T Consensus       107 ~~~~~~~~~P~~~lId~~G~  126 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDGK  126 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTSB
T ss_pred             cccccCCeecEEEEEECCCE
Confidence                   8998777654443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.11  E-value=0.00088  Score=58.18  Aligned_cols=87  Identities=13%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             CCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCC
Q 006171          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP  225 (658)
Q Consensus       146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~  225 (658)
                      .+..+..+++++|-|+.++|+   .....|.++|..+.....+|.+.-.      .++++++      +. -|++.+|++
T Consensus        10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~------~~~~~~~------~~-~~~i~l~~~   73 (97)
T cd02981          10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK------EVAKKLK------VK-PGSVVLFKP   73 (97)
T ss_pred             HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH------HHHHHcC------CC-CCceEEeCC
Confidence            344567899999999999887   5678999999999877788877733      2666665      54 499999987


Q ss_pred             CCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          226 GCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       226 g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      ...   ....|.|..+.++|.+|+..
T Consensus        74 ~~~---~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          74 FEE---EPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             ccc---CCccCCCCCCHHHHHHHHHh
Confidence            532   34779999999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.11  E-value=0.00059  Score=57.03  Aligned_cols=73  Identities=22%  Similarity=0.340  Sum_probs=52.9

Q ss_pred             EEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccccc
Q 006171          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE  237 (658)
Q Consensus       158 V~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~  237 (658)
                      |++++++|++|..+...+++++..+.  +.+-.++..   ...++ .+||      |.+.|++++  +|.      ..|.
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~---~~~~~-~~yg------v~~vPalvI--ng~------~~~~   62 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIE---DFEEI-EKYG------VMSVPALVI--NGK------VVFV   62 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETT---THHHH-HHTT-------SSSSEEEE--TTE------EEEE
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEcc---CHHHH-HHcC------CCCCCEEEE--CCE------EEEE
Confidence            56689999999999999999999883  555555554   33345 8888      889999954  453      5678


Q ss_pred             C-CCCHhHHHHHHH
Q 006171          238 G-ELSVDAVTDWFA  250 (658)
Q Consensus       238 G-~rs~~~Lv~fv~  250 (658)
                      | .-+.+.|..|++
T Consensus        63 G~~p~~~el~~~l~   76 (76)
T PF13192_consen   63 GRVPSKEELKELLE   76 (76)
T ss_dssp             SS--HHHHHHHHHH
T ss_pred             ecCCCHHHHHHHhC
Confidence            8 677888888763

...

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=97.08  E-value=0.0022  Score=55.94  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             CcEEEEEE-eCC---CCCCcHHHHHHHHhhcc--CceEEEEEecccc-cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC
Q 006171          278 HKVKVIFF-SKT---GERASPFVRQISRNYWA--YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS  350 (658)
Q Consensus       278 ~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~-s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~  350 (658)
                      .++.++.| .+.   +....+.+..++..+..  .+.++.+..  .. ...++++|+|.++|++++|++++..+..|.|.
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~--~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~   95 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA--DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGG   95 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEEC--CCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCc
Confidence            34555555 332   23346777778877752  344555432  23 46899999999999999999876666678999


Q ss_pred             CChHHHHHHH
Q 006171          351 FNNSRLSEVM  360 (658)
Q Consensus       351 ~~~~~L~~fi  360 (658)
                      .+.+.|.+|+
T Consensus        96 ~~~~~l~~~i  105 (105)
T cd02998          96 RDLEDLVKFV  105 (105)
T ss_pred             cCHHHHHhhC
Confidence            9998888874

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.04  E-value=0.0031  Score=56.65  Aligned_cols=82  Identities=16%  Similarity=0.112  Sum_probs=57.4

Q ss_pred             CcEEEEEE-eC---CCCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          278 HKVKVIFF-SK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      +++.+|.| .+   .|....|.+..++..+.+ .+.++.|....  ...++++++|.++||+++|+++ .....+.|..+
T Consensus        24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~  100 (111)
T cd02963          24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ERRLARKLGAHSVPAIVGIING-QVTFYHDSSFT  100 (111)
T ss_pred             CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cHHHHHHcCCccCCEEEEEECC-EEEEEecCCCC
Confidence            45656655 33   233346777778888764 36667664322  4679999999999999999865 33334588888


Q ss_pred             hHHHHHHHHh
Q 006171          353 NSRLSEVMEQ  362 (658)
Q Consensus       353 ~~~L~~fi~~  362 (658)
                      .+.|.+||++
T Consensus       101 ~~~l~~~i~~  110 (111)
T cd02963         101 KQHVVDFVRK  110 (111)
T ss_pred             HHHHHHHHhc
Confidence            8999999864

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.03  E-value=0.0029  Score=55.20  Aligned_cols=79  Identities=16%  Similarity=0.214  Sum_probs=55.0

Q ss_pred             cEEEEEE-eCC---CCCCcHHHHHHHHhhccC--ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC-CCeeeecCCC
Q 006171          279 KVKVIFF-SKT---GERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSF  351 (658)
Q Consensus       279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~--~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~-~~p~~y~g~~  351 (658)
                      ++.+|+| .+.   +....+.+..++..+.+.  +.|+.+.   ++..+++..+++.++|++++|+++. ..+..|.|..
T Consensus        19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id---~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~   95 (104)
T cd02995          19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMD---ATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDR   95 (104)
T ss_pred             CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEe---CcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCc
Confidence            4445544 332   233467777788877653  4555553   4445688899999999999999876 4566689999


Q ss_pred             ChHHHHHHH
Q 006171          352 NNSRLSEVM  360 (658)
Q Consensus       352 ~~~~L~~fi  360 (658)
                      +...|.+||
T Consensus        96 ~~~~l~~fi  104 (104)
T cd02995          96 TLEDLIKFI  104 (104)
T ss_pred             CHHHHHhhC
Confidence            988888875

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PLN02309 5'-adenylylsulfate reductase

Probab=97.03  E-value=0.0022  Score=71.53  Aligned_cols=99  Identities=9%  Similarity=0.138  Sum_probs=67.4

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEecccccHhHHh-hcCCCCCCEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV  335 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~-~f~V~~~Ptlv  335 (658)
                      ++.++ +++.+.....+++.+|.| .+   .|....+.+..++..|... +.|+.+.... +...+++ +|+|.++|||+
T Consensus       350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil  427 (457)
T PLN02309        350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTIL  427 (457)
T ss_pred             CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEE
Confidence            45544 455554323345555545 33   2334567777888887543 6677775431 2356775 69999999999


Q ss_pred             EEeCCCCCeeeecC-CCChHHHHHHHHh
Q 006171          336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ  362 (658)
Q Consensus       336 lfk~~~~~p~~y~g-~~~~~~L~~fi~~  362 (658)
                      +|+++...++.|.| ..+.+.|..||+.
T Consensus       428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence            99998888888975 6899999999986

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=96.99  E-value=0.0026  Score=61.52  Aligned_cols=96  Identities=11%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccc--------hhhhHHHhhCCC------------Cc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI--------RLATHLAERKPI------------GQ  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~--------~~~~~Lc~k~~i------------~k  210 (658)
                      .++++||.||++||+.|.+..|...++.++++.. +.|..|.++..        ....+..+++++            .+
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            5688999999999999999999999999999743 57778877531        111222222221            22


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccC-----------CCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-----------ELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G-----------~rs~~~Lv~fv~k~  252 (658)
                      .|.|.+.|+++++.++++     ..|.|           ..+...+.+-+...
T Consensus       104 ~~~v~~~P~~~lid~~G~-----v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  151 (171)
T cd02969         104 AYGAACTPDFFLFDPDGK-----LVYRGRIDDSRPGNDPPVTGRDLRAALDAL  151 (171)
T ss_pred             HcCCCcCCcEEEECCCCe-----EEEeecccCCcccccccccHHHHHHHHHHH
Confidence            444889999999865443     33332           23456677776665

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.98  E-value=0.014  Score=67.24  Aligned_cols=185  Identities=14%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      .+.+.|+.|+.+.|..|..+....++++ ++.+.+.+-..|..++   ..++++++      |...|++.++..+..  .
T Consensus       365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~---~~~~~~~~------v~~~P~~~i~~~~~~--~  432 (555)
T TIGR03143       365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEE---PESETLPK------ITKLPTVALLDDDGN--Y  432 (555)
T ss_pred             CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccc---hhhHhhcC------CCcCCEEEEEeCCCc--c
Confidence            4556788899999999988887777777 4556667777777633   34888888      889999999953322  1


Q ss_pred             CcccccCCCCHhHHHHHHHHhhc-cCCcceeeccchhhhhhhhhcCCCcEEEEE-EeCCC-CCCc--HHHHHHHHhhccC
Q 006171          232 CMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIF-FSKTG-ERAS--PFVRQISRNYWAY  306 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~-f~~~~-~~~~--~~~~~~A~~~~~~  306 (658)
                      ....|.|--.=..+..|+...+. +.+... ++ ++ ..+.+... +..+.+-+ .+..| .|+.  ..+..++... ..
T Consensus       433 ~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~-~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~  507 (555)
T TIGR03143       433 TGLKFHGVPSGHELNSFILALYNAAGPGQP-LG-EE-LLEKIKKI-TKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PN  507 (555)
T ss_pred             cceEEEecCccHhHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhc-CCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CC
Confidence            34788886666666666655321 112211 21 22 22333332 12233433 34433 3432  2223344432 23


Q ss_pred             ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       307 ~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      +..-.+.  ..+.++++++|+|-+.|++++   ++ + ..+.|..+.+++.+++
T Consensus       508 i~~~~i~--~~~~~~~~~~~~v~~vP~~~i---~~-~-~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       508 VEAEMID--VSHFPDLKDEYGIMSVPAIVV---DD-Q-QVYFGKKTIEEMLELI  554 (555)
T ss_pred             ceEEEEE--CcccHHHHHhCCceecCEEEE---CC-E-EEEeeCCCHHHHHHhh
Confidence            3333332  223478999999999999988   33 2 3477888888777765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.98  E-value=0.0026  Score=54.47  Aligned_cols=67  Identities=18%  Similarity=0.222  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHhh--ccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          292 ASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       292 ~~~~~~~~A~~~--~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ..+.++.++..+  ...+.|+.+....  ...++++|+|...|++++|++++.....|.|..+.+.|.+|+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          33 LAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             hhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence            456666677777  4566666664322  478999999999999999998755666688888888887764

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR01068 thioredoxin thioredoxin

Probab=96.97  E-value=0.0045  Score=53.41  Aligned_cols=82  Identities=15%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             cEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171          279 KVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (658)
Q Consensus       279 ~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~  354 (658)
                      ++.+++| .+.+   ....+.++.++..+.+.+.|+.+....  ...++++|+|...|++++|+++.. ...+.|..+.+
T Consensus        15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~~-~~~~~g~~~~~   91 (101)
T TIGR01068        15 KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGKE-VDRSVGALPKA   91 (101)
T ss_pred             CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCcE-eeeecCCCCHH
Confidence            3445555 3322   223566677777776667777776432  467999999999999999976532 23467888888


Q ss_pred             HHHHHHHhh
Q 006171          355 RLSEVMEQN  363 (658)
Q Consensus       355 ~L~~fi~~~  363 (658)
                      .|.+|++++
T Consensus        92 ~l~~~l~~~  100 (101)
T TIGR01068        92 ALKQLINKN  100 (101)
T ss_pred             HHHHHHHhh
Confidence            999999763

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=96.96  E-value=0.0031  Score=54.90  Aligned_cols=67  Identities=22%  Similarity=0.313  Sum_probs=49.8

Q ss_pred             CCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          291 RASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       291 ~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ...|.+..++..+.+   .+.|+.+...  ....++++|+|..+||+++|+++. ....|.|..+.+.|.+||
T Consensus        33 ~~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          33 RLAPTWEQLAKKFNNENPSVKIAKVDCT--QHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             HhCHHHHHHHHHHhccCCcEEEEEEECC--CChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence            346777778888765   4556655422  236799999999999999998654 445689999988888774

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.90  E-value=0.0044  Score=54.05  Aligned_cols=68  Identities=15%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             CcHHHHHHHHhhc--cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          292 ASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       292 ~~~~~~~~A~~~~--~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ..+.+..++..+.  ..+.|+.+.........++++|+|.++|++++|+++. ....|.|..+.+.|.+|+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          35 MKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             hCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence            3566666776665  3455666654433357899999999999999998754 455689998888888774

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.88  E-value=0.0034  Score=55.30  Aligned_cols=62  Identities=13%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             HHHhhccCceEEEEEecccc--cHhHHhhcCCCCCCEEEEEeC-CCCCeeeecCCCChHHHHHHH
Q 006171          299 ISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       299 ~A~~~~~~~~f~~v~~~~~~--s~~l~~~f~V~~~Ptlvlfk~-~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ++..+.+.+.+..+.+...+  ...++++|+|.+.||+++|+. ++..+..+.|.++.+.|.+++
T Consensus        39 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          39 VQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             HHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence            44555556666777654322  367999999999999999986 455666678988988888876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=96.86  E-value=0.005  Score=53.81  Aligned_cols=79  Identities=18%  Similarity=0.087  Sum_probs=56.1

Q ss_pred             EEEEEEeCC---CCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHH
Q 006171          280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (658)
Q Consensus       280 v~vl~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~  355 (658)
                      +.|.|+.+-   |....|.+..++..+.. .+.|+.+...  +...++++|+|.++||+++|+++.  ...|.|..+.+.
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~   94 (101)
T cd02994          19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QEPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED   94 (101)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CCHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence            555555432   33456777777776543 3566666533  246799999999999999998764  456899999999


Q ss_pred             HHHHHHh
Q 006171          356 LSEVMEQ  362 (658)
Q Consensus       356 L~~fi~~  362 (658)
                      |.+|+++
T Consensus        95 l~~~i~~  101 (101)
T cd02994          95 LISFIEE  101 (101)
T ss_pred             HHHHHhC
Confidence            9999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.84  E-value=0.00093  Score=58.02  Aligned_cols=97  Identities=13%  Similarity=0.243  Sum_probs=74.3

Q ss_pred             CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee----eee
Q 006171          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR----GLP  218 (658)
Q Consensus       143 ~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~----~yP  218 (658)
                      ..+|.+++....-+||.|...--..-..+ ..+.++|+.++|.+.++-|||.+. .-..||+++.      |.    .-|
T Consensus         9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlK------v~~~~kp~~   80 (112)
T cd03067           9 HKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLK------VDPSSKPKP   80 (112)
T ss_pred             hHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHc------cCCCCCCCc
Confidence            46788888888889998887644333333 489999999999999999999943 2456999987      44    233


Q ss_pred             -EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          219 -SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       219 -Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                       +|+-|.+|.-+    .+|+-..+..+|+.|++.
T Consensus        81 ~~LkHYKdG~fH----kdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          81 VELKHYKDGDFH----TEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             chhhcccCCCcc----ccccchhhHHHHHHHhhC
Confidence             36778888653    789999999999999864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.82  E-value=0.0022  Score=64.71  Aligned_cols=86  Identities=22%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc--------hhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF  223 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--------~~~~~Lc~k~~i~k~f~V~~yPTl~~f  223 (658)
                      .++.-||.||.+.|+.|+.++|+...+++++.  ..|-.|+.+..        .....++++++      |..+|++++.
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv  190 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV  190 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence            46788999999999999999999999999883  35555555421        11234777887      8899999999


Q ss_pred             CCCCCCCCCcccccCCCCHhHHHH
Q 006171          224 PPGCKSSDCMTRFEGELSVDAVTD  247 (658)
Q Consensus       224 ~~g~~~~~~~~~Y~G~rs~~~Lv~  247 (658)
                      ..+...  ....-.|..+.++|.+
T Consensus       191 ~~~~~~--~~pv~~G~~s~~~L~~  212 (215)
T PF13728_consen  191 NPNTKK--WYPVSQGFMSLDELED  212 (215)
T ss_pred             ECCCCe--EEEEeeecCCHHHHHH
Confidence            876531  2222368888888875

>PRK09381 trxA thioredoxin; Provisional

Probab=96.80  E-value=0.0055  Score=54.39  Aligned_cols=83  Identities=13%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             CcEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.++.| .+.   |....|.++.++..+.+.+.|+.+....  ...++++|+|.+.||+++|+++. ....+.|..+.
T Consensus        21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~   97 (109)
T PRK09381         21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSK   97 (109)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCCe-EEEEecCCCCH
Confidence            34545544 432   2334677788888887777777776433  46789999999999999998653 22346888888


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+|+..+
T Consensus        98 ~~l~~~i~~~  107 (109)
T PRK09381         98 GQLKEFLDAN  107 (109)
T ss_pred             HHHHHHHHHh
Confidence            8999998764

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.73  E-value=0.0046  Score=54.05  Aligned_cols=82  Identities=15%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             cEEEEEEeCC-C---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCC--CCCEEEEEeCCCCCeeee-cCCC
Q 006171          279 KVKVIFFSKT-G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY-YGSF  351 (658)
Q Consensus       279 ~v~vl~f~~~-~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~--~~Ptlvlfk~~~~~p~~y-~g~~  351 (658)
                      ++.+++|... +   +...+.++.+|.+|++.+.|+.+...+  ...+++.|++.  +.|++++++....+...+ .|.+
T Consensus        13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~   90 (103)
T cd02982          13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL   90 (103)
T ss_pred             CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence            4556666432 2   233566777999999888888886433  36799999999  899999999842222224 3445


Q ss_pred             ChHHHHHHHHh
Q 006171          352 NNSRLSEVMEQ  362 (658)
Q Consensus       352 ~~~~L~~fi~~  362 (658)
                      +.+.|.+|++.
T Consensus        91 ~~~~l~~fi~~  101 (103)
T cd02982          91 TAESLEEFVED  101 (103)
T ss_pred             CHHHHHHHHHh
Confidence            88999999975

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=96.71  E-value=0.0068  Score=57.05  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             CCcEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.||.|..    .|....+.+..++..|.+.+.|..|.+.......++.+|+|..+|++++|..++..-..+.|..+
T Consensus        19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~   98 (142)
T cd02950          19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQP   98 (142)
T ss_pred             CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence            34566766642    22334667777887887667788876544333578999999999999999654433334688888


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.+++...
T Consensus        99 ~~~l~~~l~~l  109 (142)
T cd02950          99 KQVLAQNLDAL  109 (142)
T ss_pred             HHHHHHHHHHH
Confidence            88888887764

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.69  E-value=0.012  Score=52.75  Aligned_cols=95  Identities=13%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE----
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL----  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf----  337 (658)
                      +++.+.++.|+... +..++|.+|.+........+..+|..+|+.+.|+.+.     ...+.+++++. .|.+++|    
T Consensus         5 i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~   77 (107)
T cd03068           5 LQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEK   77 (107)
T ss_pred             cCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHH
Confidence            33434467776532 1234444666543323455677888898888887764     34677888886 5778888    


Q ss_pred             --eCCCCCeeeecCC-CChHH-HHHHHHhh
Q 006171          338 --KDPGVKPVVYYGS-FNNSR-LSEVMEQN  363 (658)
Q Consensus       338 --k~~~~~p~~y~g~-~~~~~-L~~fi~~~  363 (658)
                        +..+.+..+|.|. .+..+ |.+|++.|
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence              5566777789888 67766 99999865

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=96.68  E-value=0.016  Score=52.20  Aligned_cols=65  Identities=18%  Similarity=0.148  Sum_probs=43.5

Q ss_pred             cEEEEEEcC----CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccC
Q 006171          396 WYCVILAGR----LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSE  471 (658)
Q Consensus       396 ~lcVi~~~~----~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~  471 (658)
                      +++++++..    +.++.+.+++.++.+|+                      ++|+.++.|+|+|.+.....++.|-..+
T Consensus        16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk----------------------~fk~gki~Fv~~D~~~~~~~l~~fgl~~   73 (111)
T cd03073          16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAK----------------------DFPDRKLNFAVADKEDFSHELEEFGLDF   73 (111)
T ss_pred             CeEEEEEeccccCChhHHHHHHHHHHHHHH----------------------HCcCCeEEEEEEcHHHHHHHHHHcCCCc
Confidence            366665532    34566788888888888                      7873349999999987666777772221


Q ss_pred             CcccccCCcCCCCCCCeEEEE
Q 006171          472 TSFETCGARRDMSDVPRLFIV  492 (658)
Q Consensus       472 ~~~~~c~~~~~~~~~p~vvI~  492 (658)
                                +....|.++|+
T Consensus        74 ----------~~~~~P~~~i~   84 (111)
T cd03073          74 ----------SGGEKPVVAIR   84 (111)
T ss_pred             ----------ccCCCCEEEEE
Confidence                      10125999988

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=96.64  E-value=0.0019  Score=58.44  Aligned_cols=55  Identities=9%  Similarity=0.054  Sum_probs=42.5

Q ss_pred             CCCcEEEEEecc-CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC
Q 006171          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK  206 (658)
Q Consensus       152 ~~~~~lV~FYap-wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~  206 (658)
                      .+++.+|.||+. ||++|+...+.+.++..+++.. +.+..|..+.......+++++
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~   80 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY   80 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence            568999999999 9999999999999999999864 377777776443333444443

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=96.61  E-value=0.0059  Score=61.95  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=53.7

Q ss_pred             CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeee-cCCCChHHHHHHHHhhcc
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY-YGSFNNSRLSEVMEQNKL  365 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y-~g~~~~~~L~~fi~~~~~  365 (658)
                      ..|.+..++..+.+.+.|+.+...  ....++++|+|.++||+++|+++  +...| .|..+.+.|.+|+..+..
T Consensus        70 ~~P~~e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl~~f~~G--~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443         70 MAPAWERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTLLLFDKG--KMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             HHHHHHHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEEEEEECC--EEEEeeCCCCCHHHHHHHHHHHHH
Confidence            467777788888777777776432  24789999999999999999965  33444 677899999999987653

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=96.59  E-value=0.0014  Score=68.08  Aligned_cols=104  Identities=15%  Similarity=0.259  Sum_probs=69.0

Q ss_pred             eEEEecC-CCCCcccc---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|..|+. +.|-+.|.   ....++|.||.|.+..|..+...+..+|..+. .++|.+|...   ... ++.+|+     
T Consensus       126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~---~~~-~~~~f~-----  195 (265)
T PF02114_consen  126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRAS---KCP-ASENFP-----  195 (265)
T ss_dssp             SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEEC---GCC-TTTTS------
T ss_pred             eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehh---ccC-cccCCc-----
Confidence            4678865 67888883   34568899999999999999999999999874 4688888877   322 566777     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCc---ccccC-CCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCM---TRFEG-ELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~---~~Y~G-~rs~~~Lv~fv~k~  252 (658)
                       +...|||++|++|... ...   .+.-| ..+..+|-.|+.+.
T Consensus       196 -~~~LPtllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  196 -DKNLPTLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             -TTC-SEEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             -ccCCCEEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHc
Confidence             7899999999988531 011   11112 45677777777765

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK10996 thioredoxin 2; Provisional

Probab=96.59  E-value=0.0087  Score=56.10  Aligned_cols=83  Identities=14%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|.. .+   ....+.+..++..+.+.+.|+.+...  +...++++|+|.+.|++++|+++. ....+.|.++.
T Consensus        52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~~Ptlii~~~G~-~v~~~~G~~~~  128 (139)
T PRK10996         52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRSIPTIMIFKNGQ-VVDMLNGAVPK  128 (139)
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCccCEEEEEECCE-EEEEEcCCCCH
Confidence            4565666643 22   12345566677777666667666543  347899999999999999998643 33346888899


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+|+++.
T Consensus       129 e~l~~~l~~~  138 (139)
T PRK10996        129 APFDSWLNEA  138 (139)
T ss_pred             HHHHHHHHHh
Confidence            9999999863

>PHA02278 thioredoxin-like protein

Probab=96.55  E-value=0.008  Score=53.42  Aligned_cols=82  Identities=13%  Similarity=0.103  Sum_probs=54.7

Q ss_pred             CcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccc--cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171          278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (658)
Q Consensus       278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~--s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~  351 (658)
                      +++.+|.| .+   .|....|.+..++..+.....|..+.+....  .+.++++|+|.+.||+++|+++. .-....|..
T Consensus        14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~   92 (103)
T PHA02278         14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQV   92 (103)
T ss_pred             CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCC
Confidence            34556655 33   2334567777777765445567777654321  25799999999999999999863 323467877


Q ss_pred             ChHHHHHHH
Q 006171          352 NNSRLSEVM  360 (658)
Q Consensus       352 ~~~~L~~fi  360 (658)
                      +.+.|.++-
T Consensus        93 ~~~~l~~~~  101 (103)
T PHA02278         93 TPMQLQELE  101 (103)
T ss_pred             CHHHHHhhh
Confidence            777777653

>TIGR02180 GRX_euk Glutaredoxin

Probab=96.53  E-value=0.0017  Score=54.54  Aligned_cols=57  Identities=9%  Similarity=0.070  Sum_probs=37.3

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh--hhHHHhhCCCCcccceeeeeEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~--~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      ++.|+++||++|+++.+.++++.  ..+...+-.||-+++..  ...+.+..+      +.++|++.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v~   59 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNIF   59 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeEE
Confidence            47899999999999999988876  33223444444432211  123556666      77999984

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.0021  Score=60.02  Aligned_cols=62  Identities=24%  Similarity=0.431  Sum_probs=51.6

Q ss_pred             ccCcccccCcc--CCCCHHHHHHHHHHHHHhcCCCCCC--------ChHHHHHHHHHHHHHcCChhhhhccc
Q 006171           36 PPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYD   97 (658)
Q Consensus        36 ~~d~Y~iLgv~--~~a~~~eIk~ayr~l~~~~HPD~~~--------~~~~~f~~i~~Aye~L~d~~~R~~YD   97 (658)
                      +.+||.++|..  ...++.-++.-|.-..++.|||+..        .+++.-.++++||.+|+||.+|+.|=
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            56899999755  4566777787899999999999632        25677999999999999999999986

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=96.40  E-value=0.018  Score=50.71  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             cEEEEEE-eCC---CCCCcHHHHHHHHhhccC---ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171          279 KVKVIFF-SKT---GERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (658)
Q Consensus       279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~---~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~  351 (658)
                      ++.+|.| .+.   |....|.+..++..+++.   +.++.+...  ....++++|+|.++||+++|+++  ....|.|..
T Consensus        16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~   91 (104)
T cd03000          16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--AYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPR   91 (104)
T ss_pred             CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--cCHhHHhhcCCccccEEEEEcCC--CceeecCCC
Confidence            3445544 332   233467777788777532   344444322  23689999999999999999754  345689999


Q ss_pred             ChHHHHHHHHh
Q 006171          352 NNSRLSEVMEQ  362 (658)
Q Consensus       352 ~~~~L~~fi~~  362 (658)
                      +.+.|.+|+++
T Consensus        92 ~~~~l~~~~~~  102 (104)
T cd03000          92 TKDDIVEFANR  102 (104)
T ss_pred             CHHHHHHHHHh
Confidence            99999999875

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=96.31  E-value=0.0088  Score=55.33  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      +++++|.|| +.||+.|....|.+.++.+.+... +.+..|..+......+.+++++
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~   79 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG   79 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence            678999999 589999999999999999988754 3677776664444445555554

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=96.30  E-value=0.0084  Score=54.03  Aligned_cols=102  Identities=13%  Similarity=0.069  Sum_probs=76.7

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHH---hhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~---l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |.++|.+|++....+..+..+.||.+  ..-..+.+.++++|+.   ++|.+.+..+|.++.   ....+.+|      +
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~---~~~~~~fg------l   69 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKF---RHPLLHLG------K   69 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh---hhHHHHcC------C
Confidence            35678888887777777777777733  2236788899999999   899999999999944   34778888      5


Q ss_pred             ee--eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RG--LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~--yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++  +|.+.+......  ..+..+.+..+.++|.+|+.+.
T Consensus        70 ~~~~~P~i~i~~~~~~--~Ky~~~~~~~t~~~i~~Fv~~~  107 (111)
T cd03072          70 TPADLPVIAIDSFRHM--YLFPDFEDVYVPGKLKQFVLDL  107 (111)
T ss_pred             CHhHCCEEEEEcchhc--CcCCCCccccCHHHHHHHHHHH
Confidence            55  999999876431  1122256889999999999876

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.27  E-value=0.026  Score=49.81  Aligned_cols=90  Identities=20%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccc-cHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~-s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      +++.+... .+++.+|.|. +-   |....|.+..++..| ..+.|+.+...... ...++++|+|.+.||+++|+++. 
T Consensus         6 ~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~-   82 (103)
T cd02985           6 LDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE-   82 (103)
T ss_pred             HHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe-
Confidence            34444432 3556666553 32   223467777788887 56777777644321 14799999999999999998753 


Q ss_pred             CeeeecCCCChHHHHHHHH
Q 006171          343 KPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~  361 (658)
                      ....+.|. ....|.+-+.
T Consensus        83 ~v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          83 KIHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             EEEEEeCC-CHHHHHHHHH
Confidence            34446775 4556665544

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.18  E-value=0.025  Score=49.81  Aligned_cols=87  Identities=14%  Similarity=0.189  Sum_probs=54.9

Q ss_pred             hhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      ++.+++   .+++.+|.|. +   .|....+.+..++..|.+ .+.|+.+..   +...++++|+|...||+++|+++..
T Consensus        10 ~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~---d~~~~~~~~~v~~~Pt~~~~~~g~~   83 (102)
T cd02948          10 WEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEA---DTIDTLKRYRGKCEPTFLFYKNGEL   83 (102)
T ss_pred             HHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeC---CCHHHHHHcCCCcCcEEEEEECCEE
Confidence            555554   3456666663 2   223345666667777753 245666643   3567899999999999999997532


Q ss_pred             CeeeecCCCChHHHHHHHHh
Q 006171          343 KPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~~  362 (658)
                      . ....| .+...|.++|.+
T Consensus        84 ~-~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          84 V-AVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             E-EEEec-CChHHHHHHHhh
Confidence            2 22355 477778888764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=96.13  E-value=0.012  Score=55.88  Aligned_cols=70  Identities=20%  Similarity=0.199  Sum_probs=50.1

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccc----------------------hhhhHHHhhC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDI----------------------RLATHLAERK  206 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~----------------------~~~~~Lc~k~  206 (658)
                      .++++.+.|-|-||+.|+.|.|...++-+.++..   .-|.=|.-+.+                      ....+|+++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            4689999999999999999999999988888765   23444443311                      1222344444


Q ss_pred             CCCcccceeeeeEEEEcCCCC
Q 006171          207 PIGQIFFRRGLPSLVAFPPGC  227 (658)
Q Consensus       207 ~i~k~f~V~~yPTl~~f~~g~  227 (658)
                            +|.+.|++++..+.+
T Consensus       112 ------~v~~iP~l~i~~~dG  126 (157)
T KOG2501|consen  112 ------EVKGIPALVILKPDG  126 (157)
T ss_pred             ------ccCcCceeEEecCCC
Confidence                  499999998887654

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=96.09  E-value=0.022  Score=49.54  Aligned_cols=82  Identities=15%  Similarity=0.216  Sum_probs=54.7

Q ss_pred             CCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+++|.. .+   ....+.+..++..+.+.+.+..+...  +..++.++++|.+.|++++|+++ ..-..+.|..+
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~g-~~v~~~~g~~~   88 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKDK-ELVKEISGVKM   88 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEECC-eEEEEEeCCcc
Confidence            34566666642 22   22345566677777655666666532  24679999999999999999864 33334678888


Q ss_pred             hHHHHHHHH
Q 006171          353 NSRLSEVME  361 (658)
Q Consensus       353 ~~~L~~fi~  361 (658)
                      .+.|.+|++
T Consensus        89 ~~~~~~~l~   97 (97)
T cd02949          89 KSEYREFIE   97 (97)
T ss_pred             HHHHHHhhC
Confidence            888888763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=96.09  E-value=0.015  Score=57.17  Aligned_cols=93  Identities=13%  Similarity=0.089  Sum_probs=57.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHH-hhc--ccceeeeecccch-hhhHHHh--------hCC-----------C
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIR-LATHLAE--------RKP-----------I  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~-l~g--~~~vg~Vdc~e~~-~~~~Lc~--------k~~-----------i  208 (658)
                      .+++++|+|+|.||+.|..-.|..++++.. +.-  .-....||.++.. ....+.+        .++           +
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v  137 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV  137 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence            489999999999999999999999999642 211  0023667766421 0111111        111           1


Q ss_pred             CcccceeeeeEE-EEcCCCCCCCCCcccccCCCCHhHHHH
Q 006171          209 GQIFFRRGLPSL-VAFPPGCKSSDCMTRFEGELSVDAVTD  247 (658)
Q Consensus       209 ~k~f~V~~yPTl-~~f~~g~~~~~~~~~Y~G~rs~~~Lv~  247 (658)
                      .+.|.+.++|+- +++-..++   ....+.|..+.+.+.+
T Consensus       138 ~~~~gv~~~P~T~fVIDk~Gk---Vv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       138 KNAWQLNSEDSAIIVLDKTGK---VKFVKEGALSDSDIQT  174 (184)
T ss_pred             HHhcCCCCCCceEEEECCCCc---EEEEEeCCCCHHHHHH
Confidence            124558899776 45543332   3456689888877766

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=96.07  E-value=0.0094  Score=61.53  Aligned_cols=91  Identities=13%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc--------hhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF  223 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--------~~~~~Lc~k~~i~k~f~V~~yPTl~~f  223 (658)
                      .++.-||.||..-|++|++++|+.+.+++.+.  +.+-.|+.+..        +....++++++      |..+|++++.
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv  220 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLV  220 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEE
Confidence            46688999999999999999999999999874  35555555532        11233677887      8899999998


Q ss_pred             CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          224 PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       224 ~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ..+...  ....=.|..+.++|.+=+...
T Consensus       221 ~~~t~~--~~pv~~G~iS~deL~~Ri~~v  247 (256)
T TIGR02739       221 NPKSQK--MSPLAYGFISQDELKERILNV  247 (256)
T ss_pred             ECCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence            776442  111125889999988765444

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.041  Score=49.22  Aligned_cols=81  Identities=21%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             CcEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.|+.|..    .+....|.+..+|.+|.+ +.|..|.+.+  ..++++.++|...||+++||++... ..+-|. +.
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa-~~   95 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGA-NK   95 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEE-EEEecC-CH
Confidence            5677776632    334568999999999987 8899998765  6889999999999999999987543 335555 44


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      ..+.+.+..+
T Consensus        96 ~~l~~~i~~~  105 (106)
T KOG0907|consen   96 AELEKKIAKH  105 (106)
T ss_pred             HHHHHHHHhc
Confidence            5677766543

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=95.98  E-value=0.029  Score=58.21  Aligned_cols=119  Identities=13%  Similarity=0.150  Sum_probs=78.8

Q ss_pred             CcHHHHHHHHhhccCceEEEEE--eccccc-HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCC
Q 006171          292 ASPFVRQISRNYWAYASFAFVL--WREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQEL  368 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~--~~~~~s-~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~v  368 (658)
                      ..|.+..+|..|++...-+.|-  .++|+. ..|+.+|.|++|||+-+|+.|....-.|-|..+.+.|.+||+...--.+
T Consensus        31 L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i  110 (375)
T KOG0912|consen   31 LKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI  110 (375)
T ss_pred             HhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhccHH
Confidence            4677777777776543322222  235655 6899999999999999999876544459999999999999998765556


Q ss_pred             ccccCcchhhhcccccCCcCCCCCCcccEEEEEEc-CCChhHHHHHHHHHHHHHhhc
Q 006171          369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLL  424 (658)
Q Consensus       369 P~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~-~~~~~~~~~~~~lr~~a~~~~  424 (658)
                      -++.+.+..+....      ++|    ...+.++- .++++++.    ++++|.++.
T Consensus       111 ~Ef~sl~~l~n~~~------p~K----~~vIgyF~~kdspey~~----~~kva~~lr  153 (375)
T KOG0912|consen  111 NEFESLDQLQNLDI------PSK----RTVIGYFPSKDSPEYDN----LRKVASLLR  153 (375)
T ss_pred             HHHHhHHHHHhhhc------ccc----ceEEEEeccCCCchHHH----HHHHHHHHh
Confidence            67777776653332      133    34455554 35556543    555565444

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=95.97  E-value=0.051  Score=48.98  Aligned_cols=67  Identities=19%  Similarity=0.336  Sum_probs=49.6

Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC-CeeeecCCCChHHHHHHHHh
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~-~p~~y~g~~~~~~L~~fi~~  362 (658)
                      .+.+..++..+ +.+.|..+...  +.+++.++|+|.+.||+++|++++. ..+.+.|..+..++.+|+..
T Consensus        41 ~~~l~~la~~~-~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~  108 (113)
T cd02975          41 KQLLEELSELS-DKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED  108 (113)
T ss_pred             HHHHHHHHHhc-CceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence            56666677665 45667777643  2478999999999999999997643 33457887777888888765

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=95.97  E-value=0.021  Score=56.20  Aligned_cols=55  Identities=9%  Similarity=-0.128  Sum_probs=42.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc--------cchhhhHHHh-hCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAE-RKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~--------e~~~~~~Lc~-k~~  207 (658)
                      .++++||.|+|.||+.|++ .|.++++.+++++.+ .|-.|.|.        ......+.|+ +++
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g   88 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG   88 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC
Confidence            4689999999999999976 779999999998754 88899984        2233445665 565

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.038  Score=57.56  Aligned_cols=109  Identities=12%  Similarity=0.178  Sum_probs=80.1

Q ss_pred             cceEEEecCCCCCcccc---CCCcEEEEEecc----CCCCCCCChHHHHHHHHHhhcc--------cceeeeecccchhh
Q 006171          135 VHAFNVVTSEDFPSIFH---DSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRLA  199 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v~---~~~~~lV~FYap----wC~~Ck~l~P~w~~~A~~l~g~--------~~vg~Vdc~e~~~~  199 (658)
                      +..|+.+++++|.+.+.   .+...+|+|.|-    .|.-|++...+|.-+|......        +=++.||-++-+  
T Consensus        39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p--  116 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP--  116 (331)
T ss_pred             CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH--
Confidence            34689999999999993   456678889874    5999999999999999876321        148999999544  


Q ss_pred             hHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc---cCCCCHhHHHHHHHHh
Q 006171          200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF---EGELSVDAVTDWFATA  252 (658)
Q Consensus       200 ~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y---~G~rs~~~Lv~fv~k~  252 (658)
                       ++-+.++      ++..|+|.+|++..........+   +-...++++.+|+.+.
T Consensus       117 -~~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~  165 (331)
T KOG2603|consen  117 -QVFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR  165 (331)
T ss_pred             -HHHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence             4778887      89999999996543321222222   2233499999999775

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=95.86  E-value=0.02  Score=51.78  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=46.9

Q ss_pred             CcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171          278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       278 ~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      +++.||.|. +   .|....|.+..+|.+|.+.+.|..|.+.+  .+++..+|+|.+.||+++||++.
T Consensus        14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954          14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCE
Confidence            456666663 2   23334688888999887777788887544  57899999999999999999864

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=95.86  E-value=0.04  Score=51.09  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             CCcEEEEEEeCCC-C-------CCcHHHHHHHHhhccC-ceEEEEEecccccHhHHhhcCCCC--CCEEEEEeCCCCCee
Q 006171          277 PHKVKVIFFSKTG-E-------RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPV  345 (658)
Q Consensus       277 ~~~v~vl~f~~~~-~-------~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~~f~V~~--~Ptlvlfk~~~~~p~  345 (658)
                      .+.+++|.|-++. +       .....++.+|.+|++. +.|+++...+  ...+.+.||+++  +|+++++...+.+..
T Consensus        19 ~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~KY~   96 (130)
T cd02983          19 EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKMKFA   96 (130)
T ss_pred             CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccCccc
Confidence            3568888775421 0       1233456699999988 8888886544  345999999964  999999987543433


Q ss_pred             eecCCCChHHHHHHHHhhcc
Q 006171          346 VYYGSFNNSRLSEVMEQNKL  365 (658)
Q Consensus       346 ~y~g~~~~~~L~~fi~~~~~  365 (658)
                      .+.|+++.+.|.+|++...-
T Consensus        97 ~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          97 TLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             cccCccCHHHHHHHHHHHHc
Confidence            36799999999999987533

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=95.82  E-value=0.015  Score=56.13  Aligned_cols=55  Identities=9%  Similarity=0.051  Sum_probs=43.9

Q ss_pred             CCCcEEEEEeccC-CCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapw-C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.||+.| |+.|.+-.|.+.+++++++ .+.|..|+++........+++++
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~   98 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG   98 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence            3678999999999 9999999999999999984 45778888875444455677766

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=95.81  E-value=0.042  Score=49.55  Aligned_cols=47  Identities=9%  Similarity=0.211  Sum_probs=36.6

Q ss_pred             CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      ..|.+..++..|. .+.|..|....  ...+.++|+|...||+++|+++.
T Consensus        40 ~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~G~   86 (113)
T cd02989          40 MDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFKNGK   86 (113)
T ss_pred             HHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEECCE
Confidence            4677777888775 46777776433  46799999999999999999874

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=95.81  E-value=0.036  Score=53.72  Aligned_cols=43  Identities=16%  Similarity=0.105  Sum_probs=36.0

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD  195 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e  195 (658)
                      +++++|.|| +.||++|..-.|.+.++++++... +.+..|.++.
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~   73 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS   73 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            578999999 899999999999999999999754 3666677663

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.80  E-value=0.014  Score=59.85  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=62.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc--c------hhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--I------RLATHLAERKPIGQIFFRRGLPSLVAF  223 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e--~------~~~~~Lc~k~~i~k~f~V~~yPTl~~f  223 (658)
                      .++.-||.||...|++|++++|+.+.+++.+.=  .|-.|..+.  .      +.....+++++      |..+|++++.
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv  213 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLV  213 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEE
Confidence            466889999999999999999999999998742  333344331  1      11222556666      8899999999


Q ss_pred             CCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          224 PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       224 ~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      ..+..+  ....=.|..+.++|.+=+..
T Consensus       214 ~~~t~~--~~pv~~G~iS~deL~~Ri~~  239 (248)
T PRK13703        214 DPKSGS--VRPLSYGFITQDDLAKRFLN  239 (248)
T ss_pred             ECCCCc--EEEEeeccCCHHHHHHHHHH
Confidence            776542  11112588898888775543

>TIGR03137 AhpC peroxiredoxin

Probab=95.75  E-value=0.041  Score=54.18  Aligned_cols=44  Identities=16%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD  195 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e  195 (658)
                      .+++++|.|| +.||+.|..-.|.+.++.++++... .|..|+++.
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~   75 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT   75 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence            3578999999 9999999999999999999997543 677777663

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PTZ00256 glutathione peroxidase; Provisional

Probab=95.73  E-value=0.035  Score=54.45  Aligned_cols=42  Identities=5%  Similarity=-0.116  Sum_probs=34.7

Q ss_pred             CCc-EEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc
Q 006171          153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (658)
Q Consensus       153 ~~~-~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~  194 (658)
                      +++ +++.++|.||+.|++-.|.++++.+++++. +.|..|+|+
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            454 455668999999999999999999999875 478888874

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=95.71  E-value=0.013  Score=53.34  Aligned_cols=94  Identities=10%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             cCCCcEEEEEecc----CCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       151 ~~~~~~lV~FYap----wC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.+..+|.+|+|    ||..|+..- .=+++.+-+....-+-..|.+... -..+|..++      +++||++.++...
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~------~~~~P~~~~l~~~   86 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPE-GYRVSQALR------ERTYPFLAMIMLK   86 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChH-HHHHHHHhC------CCCCCEEEEEEec
Confidence            3678999999999    888886532 112344455544455666665332 245888888      8899999888422


Q ss_pred             CCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          227 CKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       227 ~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ...-.......|..++++|+..+...
T Consensus        87 ~~~~~vv~~i~G~~~~~~ll~~L~~~  112 (116)
T cd02991          87 DNRMTIVGRLEGLIQPEDLINRLTFI  112 (116)
T ss_pred             CCceEEEEEEeCCCCHHHHHHHHHHH
Confidence            11112345678999999999988765

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=95.70  E-value=0.048  Score=46.96  Aligned_cols=88  Identities=16%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +++.+.... +++.++.|. +.+   ....+.+..++..+...+.|..+..  .+..+++++|+|.+.||+++|+++. .
T Consensus         5 ~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~~g~-~   80 (97)
T cd02984           5 FEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA--EELPEISEKFEITAVPTFVFFRNGT-I   80 (97)
T ss_pred             HHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc--ccCHHHHHhcCCccccEEEEEECCE-E
Confidence            344444332 355555553 322   2234555666666544555555542  2346799999999999999998652 2


Q ss_pred             eeeecCCCChHHHHHHH
Q 006171          344 PVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       344 p~~y~g~~~~~~L~~fi  360 (658)
                      -..+.|. +...|.+.|
T Consensus        81 ~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          81 VDRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEEeCC-CHHHHHHhh
Confidence            2223554 566666654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=95.68  E-value=0.05  Score=49.35  Aligned_cols=63  Identities=17%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             ccCceEEEEEeccc---ccHhHHhhcCCC--CCCEEEEEeCCCCCeeee--cCCCChHHHHHHHHhhccC
Q 006171          304 WAYASFAFVLWREE---ESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY--YGSFNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       304 ~~~~~f~~v~~~~~---~s~~l~~~f~V~--~~Ptlvlfk~~~~~p~~y--~g~~~~~~L~~fi~~~~~~  366 (658)
                      .+.+.++.|.+.+-   ++.+|.++|++.  .+|.+++|..+.+.|+.|  +|+++.+.|+.|+++|.-.
T Consensus        52 ~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~  121 (126)
T PF07912_consen   52 SDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL  121 (126)
T ss_dssp             -SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred             CCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence            35677888887663   458899999996  489999999888889988  8999999999999998443

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.044  Score=54.69  Aligned_cols=68  Identities=15%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCC
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK  228 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~  228 (658)
                      ...+..++.|+++||..|+++.-..+.+|+.. ....+.+++.++   ...+|+.+.      |...|+++++..|..
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~---~~eis~~~~------v~~vp~~~~~~~~~~   82 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEE---FPEISNLIA------VEAVPYFVFFFLGEK   82 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhh---hhHHHHHHH------HhcCceeeeeecchh
Confidence            46788899999999999999999999999988 556899999994   445888887      889999999977754

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=95.62  E-value=0.034  Score=49.91  Aligned_cols=59  Identities=12%  Similarity=0.221  Sum_probs=41.9

Q ss_pred             cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171          279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      .+.++.| .+.   |....|.+..+|..|. .+.|..|...+  . .++++|+|.+.||+++|+++.
T Consensus        25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~--~-~l~~~~~i~~~Pt~~~f~~G~   87 (113)
T cd02957          25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEK--A-FLVNYLDIKVLPTLLVYKNGE   87 (113)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchh--h-HHHHhcCCCcCCEEEEEECCE
Confidence            5656655 332   2234577777888875 46777776543  2 799999999999999999864

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=95.60  E-value=0.019  Score=53.41  Aligned_cols=55  Identities=13%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             CCcEEEEE-eccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171          153 SKPWLIQV-YSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       153 ~~~~lV~F-YapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      +++++|.| .+.||+.|+.-.|.+.++.++++.. +.+..|+.+........+++.+
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~   79 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF   79 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence            34555555 5999999999999999999999754 4788888775444334555554

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=95.58  E-value=0.12  Score=46.51  Aligned_cols=91  Identities=12%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             EEEEEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccc
Q 006171          397 YCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFET  476 (658)
Q Consensus       397 lcVi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~  476 (658)
                      +.++++  +.++.+..++.++.+|+.+.                   ++|++ +.|+|+|++.....++.|-.++     
T Consensus        19 ~~~l~f--~~~~~~~~~~~~~~vAk~~~-------------------~~kgk-i~Fv~~d~~~~~~~~~~fgl~~-----   71 (111)
T cd03072          19 FLILFH--DKDDLESLKEFKQAVARQLI-------------------SEKGA-INFLTADGDKFRHPLLHLGKTP-----   71 (111)
T ss_pred             eEEEEe--cchHHHHHHHHHHHHHHHHH-------------------hcCce-EEEEEEechHhhhHHHHcCCCH-----
Confidence            334555  45567888999999888322                   27765 9999999987766777773222     


Q ss_pred             cCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          477 CGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       477 c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                             ++.|.++|.    +...- .||.   +  +   ++               .-+.+.|.+|+++++.
T Consensus        72 -------~~~P~i~i~----~~~~~-~Ky~---~--~---~~---------------~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          72 -------ADLPVIAID----SFRHM-YLFP---D--F---ED---------------VYVPGKLKQFVLDLHS  109 (111)
T ss_pred             -------hHCCEEEEE----cchhc-CcCC---C--C---cc---------------ccCHHHHHHHHHHHhc
Confidence                   246999988    33220 3444   1  1   11               2255899999999997

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=95.54  E-value=0.053  Score=45.14  Aligned_cols=78  Identities=19%  Similarity=0.248  Sum_probs=50.9

Q ss_pred             cEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171          279 KVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (658)
Q Consensus       279 ~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~  354 (658)
                      ++.+++|.. .+   ....+.+..++.. ...+.|+.+....  ...+++.|++.+.|++++|+++. ....+.|..+.+
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~   86 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKE   86 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHH
Confidence            455665543 22   2234455555554 3456666665432  46799999999999999998764 333467877778


Q ss_pred             HHHHHH
Q 006171          355 RLSEVM  360 (658)
Q Consensus       355 ~L~~fi  360 (658)
                      .|.+||
T Consensus        87 ~l~~~i   92 (93)
T cd02947          87 ELEEFL   92 (93)
T ss_pred             HHHHHh
Confidence            888876

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=95.44  E-value=0.062  Score=52.49  Aligned_cols=81  Identities=11%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             cEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeee--e----c
Q 006171          279 KVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV--Y----Y  348 (658)
Q Consensus       279 ~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~--y----~  348 (658)
                      .++||.|. +.+   ....+.+..+|..|. .+.|..|....+   .++.+|+|...||+++|+++...-..  +    .
T Consensus        84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~---~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g  159 (175)
T cd02987          84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT---GASDEFDTDALPALLVYKGGELIGNFVRVTEDLG  159 (175)
T ss_pred             cEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch---hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcC
Confidence            36666553 322   223567777888874 578888865432   69999999999999999986422111  1    1


Q ss_pred             CCCChHHHHHHHHhh
Q 006171          349 GSFNNSRLSEVMEQN  363 (658)
Q Consensus       349 g~~~~~~L~~fi~~~  363 (658)
                      ..++.+.|..++..+
T Consensus       160 ~~f~~~~le~~L~~~  174 (175)
T cd02987         160 EDFDAEDLESFLVEY  174 (175)
T ss_pred             CCCCHHHHHHHHHhc
Confidence            256777888877653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=95.33  E-value=0.007  Score=55.17  Aligned_cols=75  Identities=16%  Similarity=0.118  Sum_probs=44.6

Q ss_pred             CCCcEEEEEec-------cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171          152 DSKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (658)
Q Consensus       152 ~~~~~lV~FYa-------pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~  224 (658)
                      ++++.+|.|++       +||+.|....|..+++-........+..|...+.+.-.+-...|..+..+.|+++|||+-+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~   97 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE   97 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence            56889999995       59999999999999988776544566666665221111111111111135599999999997


Q ss_pred             CC
Q 006171          225 PG  226 (658)
Q Consensus       225 ~g  226 (658)
                      .+
T Consensus        98 ~~   99 (119)
T PF06110_consen   98 TG   99 (119)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

; PDB: 1V9W_A 1WOU_A.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=95.29  E-value=0.036  Score=52.43  Aligned_cols=56  Identities=11%  Similarity=0.046  Sum_probs=41.7

Q ss_pred             CCCcEEEEEecc-CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYap-wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.||+. ||..|....+.+.++++.++.. +.+..|+.+........+++++
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~   86 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL   86 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence            467899999975 6888999999999999999765 4677777764444444555554

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=95.24  E-value=0.034  Score=51.82  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=42.0

Q ss_pred             CCCcEEEEEeccC-CCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapw-C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .++++++.||+.| |++|+.-.|.+.++.+++++ +.|..|+.+.........++++
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~   80 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEG   80 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcC
Confidence            3678999999998 69999999999999999864 4788888874333344555554

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.21  E-value=0.042  Score=63.44  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             CCcEEEE-EeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          153 SKPWLIQ-VYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       153 ~~~~lV~-FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      +++.-|+ |++|+|++|.+..-.++++|.+.. .+..-.||.+++   .+++++|+      |.++|++++  ++.    
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~---~~~~~~~~------v~~vP~~~i--~~~----  538 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHF---PDLKDEYG------IMSVPAIVV--DDQ----  538 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECccc---HHHHHhCC------ceecCEEEE--CCE----
Confidence            4555454 579999999999999999998764 456778888854   45999999      889999886  342    


Q ss_pred             CcccccCCCCHhHHHHHH
Q 006171          232 CMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv  249 (658)
                        ..|.|..+.+.|++++
T Consensus       539 --~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       539 --QVYFGKKTIEEMLELI  554 (555)
T ss_pred             --EEEeeCCCHHHHHHhh
Confidence              4578988999998875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=95.15  E-value=0.032  Score=52.16  Aligned_cols=54  Identities=17%  Similarity=0.123  Sum_probs=40.8

Q ss_pred             CcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171          154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       154 ~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      ++++|.|| +.||+.|..-.|.+.++.++++.. +.+..|+.+........+++++
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~   84 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG   84 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence            67777777 999999999999999999999753 4777888774333344556554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=94.99  E-value=0.072  Score=48.49  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=34.4

Q ss_pred             HhHHhhcCCCCCCEEEEEeCC-CCCeeeecCCCChHHHHHHHHh
Q 006171          320 SIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~-~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ..++.+|+|.+.||+++|.++ +.....+.|..+.+.+..+++.
T Consensus        74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~  117 (125)
T cd02951          74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY  117 (125)
T ss_pred             HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence            579999999999999999886 4444456888887888877665

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=94.98  E-value=0.027  Score=47.82  Aligned_cols=80  Identities=8%  Similarity=0.083  Sum_probs=52.7

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcc
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT  234 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~  234 (658)
                      -++.|+.|||++|++....+++++.++. .+.+..+|.+++.. ...+.+..+.+    +..+|+|.  .+|..      
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~if--i~g~~------   68 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKP----VETVPQIF--VDQKH------   68 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEE--ECCEE------
Confidence            3678999999999999999999887653 34677777774321 12344444422    56899975  35532      


Q ss_pred             cccCCCCHhHHHHHHHHh
Q 006171          235 RFEGELSVDAVTDWFATA  252 (658)
Q Consensus       235 ~Y~G~rs~~~Lv~fv~k~  252 (658)
                        -|  ..++|.++++..
T Consensus        69 --ig--g~~~~~~~~~~~   82 (85)
T PRK11200         69 --IG--GCTDFEAYVKEN   82 (85)
T ss_pred             --Ec--CHHHHHHHHHHh
Confidence              22  347788877655

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=94.98  E-value=0.11  Score=51.42  Aligned_cols=95  Identities=11%  Similarity=-0.014  Sum_probs=60.0

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchh----------------------hhHHHhhCCC
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRL----------------------ATHLAERKPI  208 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~----------------------~~~Lc~k~~i  208 (658)
                      ++++++.|| +.||+.|..-.+.+.+...+++... .+..|.++....                      ...+++.|++
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv  110 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence            568889999 9999999999999999999997543 666666653211                      1235555652


Q ss_pred             Ccccceeee--eEEEEcCCCCCCCCCcc-cc--cCCCCHhHHHHHHHH
Q 006171          209 GQIFFRRGL--PSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFAT  251 (658)
Q Consensus       209 ~k~f~V~~y--PTl~~f~~g~~~~~~~~-~Y--~G~rs~~~Lv~fv~k  251 (658)
                      -..  -.+.  |+.+++-+.+.  ..+. .+  ...++++++...+..
T Consensus       111 ~~~--~~g~~~r~tfIID~~G~--I~~~~~~~~~~~~~~~eil~~l~a  154 (187)
T PRK10382        111 MRE--DEGLADRATFVVDPQGI--IQAIEVTAEGIGRDASDLLRKIKA  154 (187)
T ss_pred             Ccc--cCCceeeEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHh
Confidence            100  0255  88888754432  0111 11  234788888887744

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=94.95  E-value=0.037  Score=51.21  Aligned_cols=43  Identities=12%  Similarity=0.043  Sum_probs=37.1

Q ss_pred             CCCcEEEEEeccCCCC-CCCChHHHHHHHHHhhcc----cceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~-Ck~l~P~w~~~A~~l~g~----~~vg~Vdc~  194 (658)
                      .+++++|.||++||+. |.+..|.++++.++++..    +.+..|+++
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            4679999999999997 999999999999999753    577777775

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=94.94  E-value=0.12  Score=46.60  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=50.5

Q ss_pred             CCcEEEEEEeCC----CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeee
Q 006171          277 PHKVKVIFFSKT----GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY  347 (658)
Q Consensus       277 ~~~v~vl~f~~~----~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y  347 (658)
                      ..++.||-|+..    +....|.+..+|..|.+.+.|..|.+.+  .+++++.|+|..-||.++|+++.+-.+.|
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~   85 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDY   85 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence            467778877532    2224577888999887667777776543  57899999999999999999876555544

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=94.93  E-value=0.14  Score=48.30  Aligned_cols=91  Identities=12%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             hhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEE-EEeCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlv-lfk~~~~  342 (658)
                      +++.+... .+++.||-|. +   .|....|.+..+|.++.+...|..|.+.+  .+++++.|+|.+.|+++ +||++..
T Consensus        14 ~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ffk~g~~   90 (142)
T PLN00410         14 VDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFFFRNKHI   90 (142)
T ss_pred             HHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEEEECCeE
Confidence            45555433 4556666553 2   22335678888999887777777776543  57899999999765555 8887642


Q ss_pred             Ceee-ecC--------CCChHHHHHHHHh
Q 006171          343 KPVV-YYG--------SFNNSRLSEVMEQ  362 (658)
Q Consensus       343 ~p~~-y~g--------~~~~~~L~~fi~~  362 (658)
                       .+. ..|        ..+.++|.+.++.
T Consensus        91 -~vd~~tG~~~k~~~~~~~k~~l~~~i~~  118 (142)
T PLN00410         91 -MIDLGTGNNNKINWALKDKQEFIDIVET  118 (142)
T ss_pred             -EEEEecccccccccccCCHHHHHHHHHH
Confidence             333 355        2355666666554

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=94.91  E-value=0.034  Score=44.75  Aligned_cols=54  Identities=11%  Similarity=0.029  Sum_probs=36.2

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ++.|+++||++|.++.+.+++.      .+.+..+|.+.+.. ...+.+..+      +.++|+|.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence            5789999999999987766552      23666777764322 222433335      679999976

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=0.019  Score=51.60  Aligned_cols=80  Identities=11%  Similarity=0.015  Sum_probs=55.3

Q ss_pred             CCCCccc---cCCCcEEEEEec--------cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          144 EDFPSIF---HDSKPWLIQVYS--------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       144 ~nF~~~v---~~~~~~lV~FYa--------pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      +.|++.+   .+++..+|.|++        +||+.|.+..|...++-+.......|..|+..+.+.=...+..|.  +.+
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR--~d~   90 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR--KDP   90 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc--cCC
Confidence            3455555   255569999995        799999999999999988665556888888875433222333332  333


Q ss_pred             ce-eeeeEEEEcCC
Q 006171          213 FR-RGLPSLVAFPP  225 (658)
Q Consensus       213 ~V-~~yPTl~~f~~  225 (658)
                      ++ .++|||.=+.+
T Consensus        91 ~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   91 GILTAVPTLLRWKR  104 (128)
T ss_pred             CceeecceeeEEcC
Confidence            34 89999988774

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.81  E-value=0.069  Score=61.10  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=66.1

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      ++..-+-.|++|.|++|.+......++|.. .+.+..-.||+.++   .+++++|+      |.++|++++  ++.    
T Consensus       115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~---~~~~~~~~------v~~VP~~~i--~~~----  178 (517)
T PRK15317        115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALF---QDEVEARN------IMAVPTVFL--NGE----  178 (517)
T ss_pred             CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhC---HhHHHhcC------CcccCEEEE--CCc----
Confidence            345668889999999999999889888874 45667888888844   45999998      889999965  442    


Q ss_pred             CcccccCCCCHhHHHHHHHHh
Q 006171          232 CMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        ..|.|..+.++|++.+.+.
T Consensus       179 --~~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        179 --EFGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             --EEEecCCCHHHHHHHHhcc
Confidence              5678999999999888653

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=94.65  E-value=0.066  Score=49.35  Aligned_cols=55  Identities=18%  Similarity=0.107  Sum_probs=41.7

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK  206 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~  206 (658)
                      .+++++|.|| +.||..|....|.+.++.+.++.. +.|..|..+........+++.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~   77 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE   77 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence            4788999999 789999999999999999999543 478888876433333444554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=94.51  E-value=0.11  Score=49.47  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             hhhhhhhcCCCcEEEE-EEeCC---CCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCC------CCEEEE
Q 006171          268 GKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------APAIVF  336 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl-~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~------~Ptlvl  336 (658)
                      +++.+... ...+.+| |+.+.   +....|.+..++..+.+ .+.|+.|+...  .++++++|+|.+      .||+++
T Consensus        38 f~~~l~~~-~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~PT~il  114 (152)
T cd02962          38 LEEELERD-KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQLPTIIL  114 (152)
T ss_pred             HHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCCCEEEE
Confidence            44554332 2334455 44432   23346777778887753 47778876433  478999999987      999999


Q ss_pred             EeCCC
Q 006171          337 LKDPG  341 (658)
Q Consensus       337 fk~~~  341 (658)
                      |+++.
T Consensus       115 f~~Gk  119 (152)
T cd02962         115 FQGGK  119 (152)
T ss_pred             EECCE
Confidence            99763

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=94.45  E-value=0.025  Score=55.08  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       143 ~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ..+|-..+....-+++.||-|.-..|+-+-...+.+|+..-+ .+|.+||+.   ..+=||.+++      |+-.|++.+
T Consensus        74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae---~~PFlv~kL~------IkVLP~v~l  143 (211)
T KOG1672|consen   74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAE---KAPFLVTKLN------IKVLPTVAL  143 (211)
T ss_pred             HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecc---cCceeeeeee------eeEeeeEEE
Confidence            455666666677899999999999999999999999975422 289999999   4444899999      889999999


Q ss_pred             cCCCCC
Q 006171          223 FPPGCK  228 (658)
Q Consensus       223 f~~g~~  228 (658)
                      |.+|..
T Consensus       144 ~k~g~~  149 (211)
T KOG1672|consen  144 FKNGKT  149 (211)
T ss_pred             EEcCEE
Confidence            999864

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=94.24  E-value=0.08  Score=47.71  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             EecCCCCCccccCCCcEEEEEe----ccCCCCCCCChHHHHHHHHHhh-cccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          140 VVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       140 ~Lt~~nF~~~v~~~~~~lV~FY----apwC~~Ck~l~P~w~~~A~~l~-g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      ++|.+|.....  ..+.++-||    +..-..-..+...+.++|+.++ |.+.++.+|.++..   ...+.+|      +
T Consensus         3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fg------l   71 (111)
T cd03073           3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFG------L   71 (111)
T ss_pred             eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcC------C
Confidence            45666655443  334455554    2222333567889999999999 68999999999443   3677888      5


Q ss_pred             e--e--eeEEEEcCCCCCCCCCcccccCCC-CHhHHHHHHHHh
Q 006171          215 R--G--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA  252 (658)
Q Consensus       215 ~--~--yPTl~~f~~g~~~~~~~~~Y~G~r-s~~~Lv~fv~k~  252 (658)
                      +  .  +|++.++.....+    ....+.. +.++|.+|+.+.
T Consensus        72 ~~~~~~~P~~~i~~~~~~K----Y~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          72 DFSGGEKPVVAIRTAKGKK----YVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CcccCCCCEEEEEeCCCCc----cCCCcccCCHHHHHHHHHHh
Confidence            5  4  9999998643221    1246778 999999999764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=94.23  E-value=0.42  Score=42.34  Aligned_cols=97  Identities=14%  Similarity=0.326  Sum_probs=60.5

Q ss_pred             EEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcC-CCcEEEEEEeccchHHHHHHHcccCCcc
Q 006171          397 YCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR-NKRLTFAWLDGEAQDRYCSFYLFSETSF  474 (658)
Q Consensus       397 lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~v~F~wvd~~~q~~~~~~f~~~~~~~  474 (658)
                      +.+++|.. .+++--++.+.++++|+                      .++ ...++|+|||-+.-+-.+.+.-+.... 
T Consensus        22 ~~IvAFaee~dpdG~eFl~ilk~vA~----------------------~nt~np~LsiIWIDPD~FPllv~yWektF~I-   78 (120)
T cd03074          22 IHIVAFAEEEDPDGYEFLEILKEVAR----------------------DNTDNPDLSIIWIDPDDFPLLVPYWEKTFGI-   78 (120)
T ss_pred             ceEEEEeccCCccHHHHHHHHHHHHH----------------------hcCcCCCceEEEECCccCchhhHHHHhhcCc-
Confidence            45666665 45555677888888888                      332 366999999997766666665433332 


Q ss_pred             cccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHh
Q 006171          475 ETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII  548 (658)
Q Consensus       475 ~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~  548 (658)
                             +.. .|.|=|+    |.+-  ....   |  ++..+.++          .+   +.++++.||+.+|
T Consensus        79 -------Dl~-~PqIGVV----~vtd--adSv---W--~~m~~~~d----------~~---t~~~Le~WiedVL  120 (120)
T cd03074          79 -------DLF-RPQIGVV----NVTD--ADSV---W--MEMDDDED----------LP---TAEELEDWIEDVL  120 (120)
T ss_pred             -------ccC-CCceeeE----eccc--ccce---e--Eecccccc----------cC---cHHHHHHHHHhhC
Confidence                   332 5999998    6664  2222   6  41111111          11   5689999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=94.11  E-value=0.26  Score=40.83  Aligned_cols=64  Identities=17%  Similarity=0.275  Sum_probs=45.9

Q ss_pred             CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ..+.+..++..+...+.+..+...  +..+++++|++.+.|++++  ++.   ..+.|..+.+.|.+++..
T Consensus        17 ~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l~~~l~~   80 (82)
T TIGR00411        17 AKRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEELVEAIKK   80 (82)
T ss_pred             HHHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHHHHHHHh
Confidence            355666677777655666776543  3567899999999999886  332   257888888888888765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=94.04  E-value=0.12  Score=52.92  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHH-h---------hcc---------------------------cceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EGI---------------------------ANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~-l---------~g~---------------------------~~vg~Vdc~  194 (658)
                      +.+..++.|.-|.|++|+++.++++++.+. +         .|.                           ..+..-.|.
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~  185 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD  185 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence            567889999999999999999888775430 0         000                           001111343


Q ss_pred             c-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       195 e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      . -.....+|+++|      |+|.|||+ |.+|.       ...|..+.+.|.+++.+.
T Consensus       186 ~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        186 VDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             chHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence            1 122334778887      89999999 66763       348989999999988653

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=93.89  E-value=0.073  Score=52.76  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=52.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHh--------------------------------hccc---ce--eeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--------------------------------EGIA---NT--GMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l--------------------------------~g~~---~v--g~Vdc~  194 (658)
                      +.++.++.|..|.|++|+++.+...+....+                                ....   ..  ..-.|.
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~  155 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCD  155 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccC
Confidence            4678999999999999999988876410000                                0000   00  011233


Q ss_pred             c-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHH
Q 006171          195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW  248 (658)
Q Consensus       195 e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~f  248 (658)
                      . -.....+++++|      |++.|||+ |.+|.       .+.|..+.+.|.++
T Consensus       156 ~~i~~~~~l~~~~g------i~gtPtii-~~~G~-------~~~G~~~~~~l~~~  196 (197)
T cd03020         156 NPVAANLALGRQLG------VNGTPTIV-LADGR-------VVPGAPPAAQLEAL  196 (197)
T ss_pred             chHHHHHHHHHHcC------CCcccEEE-ECCCe-------EecCCCCHHHHHhh
Confidence            1 112334788888      88999997 77663       34788888877765

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=93.83  E-value=0.05  Score=48.58  Aligned_cols=81  Identities=16%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCC---CCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC---GQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C---k~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      ....++.++++..+......++.|..+ |..|   ...+=+.-|+.+.+.+....+.|.-.   .+..|..+||      
T Consensus        10 g~~~vd~~~ld~~l~~~~~~vlf~~gD-p~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------   79 (107)
T PF07449_consen   10 GWPRVDADTLDAFLAAPGDAVLFFAGD-PARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------   79 (107)
T ss_dssp             TEEEE-CCCHHHHHHCCSCEEEEESS--TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT------
T ss_pred             CCeeechhhHHHHHhCCCcEEEEECCC-CCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------
Confidence            456788899998887666665555554 4444   34344666666667776677777745   5566999999      


Q ss_pred             eeeeeEEEEcCCCC
Q 006171          214 RRGLPSLVAFPPGC  227 (658)
Q Consensus       214 V~~yPTl~~f~~g~  227 (658)
                      +..+|++++|++|.
T Consensus        80 v~~~PaLvf~R~g~   93 (107)
T PF07449_consen   80 VRRWPALVFFRDGR   93 (107)
T ss_dssp             -TSSSEEEEEETTE
T ss_pred             CccCCeEEEEECCE
Confidence            88999999999984

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.81  E-value=0.06  Score=43.00  Aligned_cols=53  Identities=8%  Similarity=0.112  Sum_probs=36.8

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      ++.|+++||++|+++.+.+++..      +.+-.+|...+.. ...+.+..+      ...+|++.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~~   55 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQIF   55 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence            56788999999999887776554      4667788775432 233555555      56888774

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=93.69  E-value=0.18  Score=45.45  Aligned_cols=63  Identities=16%  Similarity=0.205  Sum_probs=41.1

Q ss_pred             cEEEEEE-eCC---CCCCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171          279 KVKVIFF-SKT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      ++.++.| .+-   +....+.+..++..+++   .+.|+.+.........++++|+|..+||+++|+++.
T Consensus        20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~   89 (114)
T cd02992          20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS   89 (114)
T ss_pred             CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence            4556655 332   22345667778777654   355555543222246799999999999999999875

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PTZ00051 thioredoxin; Provisional

Probab=93.60  E-value=0.38  Score=41.43  Aligned_cols=82  Identities=21%  Similarity=0.221  Sum_probs=48.3

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +...++   .+++.+++|. +.+   ....+.+..++..+. .+.|+.+...  +...++++|+|.+.|++++|+++. .
T Consensus        11 ~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~   83 (98)
T PTZ00051         11 FESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGS-V   83 (98)
T ss_pred             HHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCe-E
Confidence            444443   3456566554 322   223455666666553 3556666432  246799999999999999998653 2


Q ss_pred             eeeecCCCChHHHH
Q 006171          344 PVVYYGSFNNSRLS  357 (658)
Q Consensus       344 p~~y~g~~~~~~L~  357 (658)
                      ...+.|. ..++|+
T Consensus        84 ~~~~~G~-~~~~~~   96 (98)
T PTZ00051         84 VDTLLGA-NDEALK   96 (98)
T ss_pred             EEEEeCC-CHHHhh
Confidence            2335664 444443

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.48  E-value=0.055  Score=45.10  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=36.4

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-h-hhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R-LATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~-~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.|+++||++|+.+.+.++++...    ..+-.|+..++ . ....+.+..+      +.++|++  |.+|
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g   61 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGG   61 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence            5789999999999999888776542    23334444322 1 1122444456      7799986  4444

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=93.41  E-value=0.11  Score=43.99  Aligned_cols=33  Identities=9%  Similarity=0.137  Sum_probs=26.1

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhccccee
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG  189 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg  189 (658)
                      ++.|+.+.|++|..+.+..+++.....+.+.+-
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~   33 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVV   33 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEE
Confidence            468999999999999999999975555544433

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=0.045  Score=53.39  Aligned_cols=52  Identities=23%  Similarity=0.333  Sum_probs=44.5

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELL   87 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~----------~~~~~f~~i~~Aye~L   87 (658)
                      ..+.|.+||+...++..+|+++||++..+.|||+-.          ...+++++|++||+.+
T Consensus       112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            368999999999999999999999999999999522          1456799999999854

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=93.25  E-value=0.69  Score=49.24  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=43.1

Q ss_pred             CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCccccCcc
Q 006171          306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT  375 (658)
Q Consensus       306 ~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~  375 (658)
                      .+.||.|.  ......+++++|+...++|++|+++  .-+.|.|.++...|.+|+-.---.-+-.+++..
T Consensus        90 gigfg~VD--~~Kd~klAKKLgv~E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~  155 (383)
T PF01216_consen   90 GIGFGMVD--SKKDAKLAKKLGVEEEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKH  155 (383)
T ss_dssp             TEEEEEEE--TTTTHHHHHHHT--STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHH
T ss_pred             CcceEEec--cHHHHHHHHhcCccccCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChh
Confidence            34556654  3335789999999999999999986  456799999999999998764333343455544

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PRK13190 putative peroxiredoxin; Provisional

Probab=92.95  E-value=0.44  Score=47.58  Aligned_cols=91  Identities=11%  Similarity=-0.012  Sum_probs=57.8

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchh------------------------hhHHHhhCCCCc
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRL------------------------ATHLAERKPIGQ  210 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~------------------------~~~Lc~k~~i~k  210 (658)
                      +|+.|.+.||+.|..-.+.+.++..+++... .+..|+++....                        ...+++.||   
T Consensus        31 vL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~yg---  107 (202)
T PRK13190         31 LLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYN---  107 (202)
T ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcC---
Confidence            3446789999999999999999999997543 667777663211                        012444444   


Q ss_pred             cccee------eeeEEEEcCCCCCC-CCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRR------GLPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~------~yPTl~~f~~g~~~-~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         +.      .+|+.+++-+++.- ........+.|+.++++..+...
T Consensus       108 ---v~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        108 ---LIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             ---CccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence               53      58998888654430 00001114568999998887654

>PRK15000 peroxidase; Provisional

Probab=92.92  E-value=0.53  Score=46.95  Aligned_cols=97  Identities=8%  Similarity=0.037  Sum_probs=61.3

Q ss_pred             CCCcEEEEEec-cCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHh----hCC---------------CCc
Q 006171          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAE----RKP---------------IGQ  210 (658)
Q Consensus       152 ~~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~----k~~---------------i~k  210 (658)
                      .++++++.||+ .||+.|..-.|.+.+.+++++... .|-.|.++........++    +.+               +.+
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            36789999999 599999999999999999997654 677777773221111111    111               011


Q ss_pred             cccee------eeeEEEEcCCCCCCCCCcccc----cCCCCHhHHHHHHHH
Q 006171          211 IFFRR------GLPSLVAFPPGCKSSDCMTRF----EGELSVDAVTDWFAT  251 (658)
Q Consensus       211 ~f~V~------~yPTl~~f~~g~~~~~~~~~Y----~G~rs~~~Lv~fv~k  251 (658)
                      .|.+.      .+|+.+++-+.+.   ....+    .-.|+.++++..+..
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~---I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGI---VRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHH
Confidence            24465      6888888864432   11112    234788888887754

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=92.79  E-value=0.08  Score=55.28  Aligned_cols=87  Identities=9%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      +..++=+.||+.||+..+...|.++-....+...-.++   .++........++++      +.+.|++.+.....    
T Consensus        75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~------~~~~ps~~~~n~t~----  141 (319)
T KOG2640|consen   75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYG------IHSEPSNLMLNQTC----  141 (319)
T ss_pred             cCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccc------cccCCcceeecccc----
Confidence            46677889999999999999999987777665222333   344445555677788      77999999887654    


Q ss_pred             CcccccCCCCHhHHHHHHHHh
Q 006171          232 CMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       +..|.|.++..+|++|-.+.
T Consensus       142 -~~~~~~~r~l~sLv~fy~~i  161 (319)
T KOG2640|consen  142 -PASYRGERDLASLVNFYTEI  161 (319)
T ss_pred             -chhhcccccHHHHHHHHHhh
Confidence             58999999999999998776

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=92.78  E-value=0.45  Score=47.18  Aligned_cols=78  Identities=10%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             CcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecC----
Q 006171          278 HKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYG----  349 (658)
Q Consensus       278 ~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g----  349 (658)
                      +.++||.|. +.   |....+.+..+|..|. .+.|..+.+..     ...+|++...||+++|+++.... .+.|    
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i~~lPTlliyk~G~~v~-~ivG~~~~  174 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPDKNLPTILVYRNGDIVK-QFIGLLEF  174 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCCCCCCEEEEEECCEEEE-EEeCchhh
Confidence            345566553 32   2234677788998885 57888886432     36899999999999999874321 1222    


Q ss_pred             ---CCChHHHHHHHHh
Q 006171          350 ---SFNNSRLSEVMEQ  362 (658)
Q Consensus       350 ---~~~~~~L~~fi~~  362 (658)
                         .++..+|..++.+
T Consensus       175 gg~~~~~~~lE~~L~~  190 (192)
T cd02988         175 GGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CCCCCCHHHHHHHHHh
Confidence               4566777777654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=92.57  E-value=0.64  Score=46.21  Aligned_cols=43  Identities=9%  Similarity=0.135  Sum_probs=35.6

Q ss_pred             CCcEEEEEec-cCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171          153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD  195 (658)
Q Consensus       153 ~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e  195 (658)
                      +++.+|.||+ .||.+|..-.+.+.+++++++... .|-.|+++.
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~   80 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS   80 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            5678889995 889999998899999999998654 777888773

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=92.23  E-value=0.083  Score=41.59  Aligned_cols=54  Identities=13%  Similarity=0.115  Sum_probs=36.7

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ++.|..+||++|++....+++.      .+.+-.+|.+++. ....|.+..+      ..++|++.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSG------VRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence            4678899999998876555321      1478888888653 3333445446      779999875

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=91.84  E-value=0.43  Score=54.60  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=63.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      +...-+--|++|.|++|....-...++|..- +.+..-.||+.++   .+++++|+      |.++|++++  ++.    
T Consensus       116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~---~~~~~~~~------v~~VP~~~i--~~~----  179 (515)
T TIGR03140       116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALF---QDEVEALG------IQGVPAVFL--NGE----  179 (515)
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhC---HHHHHhcC------CcccCEEEE--CCc----
Confidence            3456688899999999998887787777654 3556677888844   45899998      889999876  442    


Q ss_pred             CcccccCCCCHhHHHHHHHHh
Q 006171          232 CMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        ..+.|..+.+.+++.+.+.
T Consensus       180 --~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       180 --EFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             --EEEecCCCHHHHHHHHhhc
Confidence              4578989888888777543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=91.65  E-value=0.11  Score=49.98  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=42.2

Q ss_pred             cCCCcEEEEEeccCCCCCCCChH-HH--HHHHHHhhcccceeeeecccchhhhHHHhhC--------CCCcccceeeeeE
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIFFRRGLPS  219 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P-~w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~--------~i~k~f~V~~yPT  219 (658)
                      ..++++||.++++||+.|+.|+- .|  .++|..|.....-.+||-++.+.   +...|        |      ..|+|+
T Consensus        35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd---id~~y~~~~~~~~~------~gGwPl  105 (163)
T PF03190_consen   35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD---IDKIYMNAVQAMSG------SGGWPL  105 (163)
T ss_dssp             HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH---HHHHHHHHHHHHHS---------SSE
T ss_pred             hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc---HHHHHHHHHHHhcC------CCCCCc
Confidence            47899999999999999998874 44  34677776666666788876554   33333        4      459999


Q ss_pred             EEEcCCCCC
Q 006171          220 LVAFPPGCK  228 (658)
Q Consensus       220 l~~f~~g~~  228 (658)
                      -++..+...
T Consensus       106 ~vfltPdg~  114 (163)
T PF03190_consen  106 TVFLTPDGK  114 (163)
T ss_dssp             EEEE-TTS-
T ss_pred             eEEECCCCC
Confidence            888876543

; PDB: 3IRA_A.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=91.48  E-value=0.34  Score=54.27  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=27.1

Q ss_pred             ccccCccCCCCHHHHHHHHHHHHHhcCCCCCC
Q 006171           40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI   71 (658)
Q Consensus        40 Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~   71 (658)
                      ++=.++..=.+.++||++|||.++..||||-+
T Consensus       391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlq  422 (453)
T KOG0431|consen  391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQ  422 (453)
T ss_pred             cccCchhhccCHHHHHHHHHhhhheeCccccc
Confidence            34446777789999999999999999999866

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=91.43  E-value=0.2  Score=46.62  Aligned_cols=31  Identities=3%  Similarity=0.144  Sum_probs=26.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHh
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL  182 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l  182 (658)
                      +.++.++.|+.++|+||+++.|.++++...+
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~   34 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED   34 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence            3567899999999999999999998877654

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=91.38  E-value=1  Score=41.13  Aligned_cols=81  Identities=14%  Similarity=0.228  Sum_probs=50.9

Q ss_pred             CcEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccc---------cHhHHhhcCCC----CCCEEEEEeCC
Q 006171          278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVE----SAPAIVFLKDP  340 (658)
Q Consensus       278 ~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~---------s~~l~~~f~V~----~~Ptlvlfk~~  340 (658)
                      ++..+++|+.    .|....|.++.++...  ...+.+|.+....         -.++.++|++.    +.||+++|++|
T Consensus        23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G  100 (122)
T TIGR01295        23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG  100 (122)
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence            3455666642    2334578888877763  5667888765321         12566777655    49999999987


Q ss_pred             CCCeeeecC-CCChHHHHHHHH
Q 006171          341 GVKPVVYYG-SFNNSRLSEVME  361 (658)
Q Consensus       341 ~~~p~~y~g-~~~~~~L~~fi~  361 (658)
                      .... ...| ..+.+.|.+|+.
T Consensus       101 k~v~-~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295       101 KQVS-VRCGSSTTAQELQDIAA  121 (122)
T ss_pred             eEEE-EEeCCCCCHHHHHHHhh
Confidence            5332 2456 456888888863

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=91.38  E-value=0.82  Score=40.16  Aligned_cols=91  Identities=14%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             hhhhhhhcCCCcEEEEEEeCCCCCCcH---HHHHHHHhhccCceEEEEEecccccHhHHhhcCCC----CCCE-EEEEeC
Q 006171          268 GKNFLAKTGPHKVKVIFFSKTGERASP---FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAPA-IVFLKD  339 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~~~~~~~~---~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~----~~Pt-lvlfk~  339 (658)
                      +...+..  .+.+.++|..+.. ....   .++.+|.+.++.-..++|...+.+...||++++|.    ..|. |.-|++
T Consensus        12 fKKLLRT--r~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKd   88 (112)
T cd03067          12 FKKLLRT--RNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKD   88 (112)
T ss_pred             HHHHHhh--cCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccC
Confidence            3444433  3457666665432 2233   33447777665544555544444457899999998    5554 445676


Q ss_pred             CCCCeeeecCCCChHHHHHHHHh
Q 006171          340 PGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       340 ~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      |+ -...|+..++...|..|++.
T Consensus        89 G~-fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          89 GD-FHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             CC-ccccccchhhHHHHHHHhhC
Confidence            54 33458888888999999864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=91.15  E-value=0.25  Score=41.37  Aligned_cols=57  Identities=14%  Similarity=0.201  Sum_probs=38.3

Q ss_pred             CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      +.-++.|..+||++|++..-.+++.     + +.+-.+|++++.....+.+..|      ...+|+|.+
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i   63 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTG------ATTVPQVFI   63 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHC------CCCcCeEEE
Confidence            3457789999999999877666432     2 3566678775533344555556      679999853

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=91.03  E-value=0.23  Score=42.42  Aligned_cols=79  Identities=8%  Similarity=0.035  Sum_probs=47.1

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      ++.|..|||++|.+..-.++++..+..+ +.+-.+|.+.+. ....+.+..+.+    +..+|+|.  .+|..       
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~if--i~g~~-------   67 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKP----VETVPQIF--VDEKH-------   67 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEE--ECCEE-------
Confidence            6788899999999987766665433212 356666665322 122354444421    46899984  34421       


Q ss_pred             ccCCCCHhHHHHHHHHh
Q 006171          236 FEGELSVDAVTDWFATA  252 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv~k~  252 (658)
                       -|  ..++|++++++.
T Consensus        68 -ig--G~~dl~~~~~~~   81 (86)
T TIGR02183        68 -VG--GCTDFEQLVKEN   81 (86)
T ss_pred             -ec--CHHHHHHHHHhc
Confidence             22  247888887665

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=90.87  E-value=0.077  Score=49.17  Aligned_cols=67  Identities=9%  Similarity=0.046  Sum_probs=38.7

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      .+.-++-|..+|||.|.+.-|...++|+... .+.+--+--+++.   ++-.++-.   ......||++++..+
T Consensus        41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~---el~~~~lt---~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   41 KPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENK---ELMDQYLT---NGGRSIPTFIFLDKD  107 (129)
T ss_dssp             S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHH---HHTTTTTT----SS--SSEEEEE-TT
T ss_pred             CCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCCh---hHHHHHHh---CCCeecCEEEEEcCC
Confidence            4456667889999999999999999999753 3444444444332   24444310   117799999999654

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.70  E-value=0.64  Score=44.05  Aligned_cols=94  Identities=19%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             cccCCCcEEEEEeccCCCCCCCChHHHHH---HHHHhhcccceeeeecc-------------cchhhhHHHhhCCCCccc
Q 006171          149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGIANTGMVELG-------------DIRLATHLAERKPIGQIF  212 (658)
Q Consensus       149 ~v~~~~~~lV~FYapwC~~Ck~l~P~w~~---~A~~l~g~~~vg~Vdc~-------------e~~~~~~Lc~k~~i~k~f  212 (658)
                      ....++..|++|-++.|..|.+|...-..   +-+-+++...+..+|..             +--...+||++++     
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~-----  112 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA-----  112 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc-----
Confidence            33678999999999999999988754432   23334443333333332             1112346999998     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHH---HHHHHH
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAV---TDWFAT  251 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~L---v~fv~k  251 (658)
                       |++.||+++|...+.   ..-.-.|-...+.+   .+|+.+
T Consensus       113 -vrstPtfvFfdk~Gk---~Il~lPGY~ppe~Fl~vlkYVa~  150 (182)
T COG2143         113 -VRSTPTFVFFDKTGK---TILELPGYMPPEQFLAVLKYVAD  150 (182)
T ss_pred             -cccCceEEEEcCCCC---EEEecCCCCCHHHHHHHHHHHHH
Confidence             999999999976644   12333576666654   445433

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.10  E-value=0.13  Score=50.16  Aligned_cols=61  Identities=16%  Similarity=0.315  Sum_probs=46.9

Q ss_pred             CcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCCh--------HHHHHHHHHHHHHcCChhhhhcccc
Q 006171           38 SHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        38 d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      |+...+|..+.+  ..+.++..|+.+.+.+|||+...+        -+.+..++.||.+|.+|-.|..|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            344555655544  457789999999999999976521        2458899999999999999998864

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=89.94  E-value=3.2  Score=37.03  Aligned_cols=86  Identities=14%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             CCcEEEEEEeCCCCCC-cHHHHH------HHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeC-CCCCeeeec
Q 006171          277 PHKVKVIFFSKTGERA-SPFVRQ------ISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVKPVVYY  348 (658)
Q Consensus       277 ~~~v~vl~f~~~~~~~-~~~~~~------~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~-~~~~p~~y~  348 (658)
                      .+++.+|++....... ..+.+.      +...+.+...+..+...+.+...+...|++.++|+++++.. .+.......
T Consensus        16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~   95 (114)
T cd02958          16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWS   95 (114)
T ss_pred             hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEc
Confidence            4678888775432101 111111      22233223333333333334467999999999999999987 444444468


Q ss_pred             CCCChHHHHHHHHh
Q 006171          349 GSFNNSRLSEVMEQ  362 (658)
Q Consensus       349 g~~~~~~L~~fi~~  362 (658)
                      |..+.+.+...++.
T Consensus        96 G~~~~~~f~~~L~~  109 (114)
T cd02958          96 GNITPEDLLSQLIE  109 (114)
T ss_pred             CCCCHHHHHHHHHH
Confidence            98888877766654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=89.91  E-value=0.35  Score=46.46  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccccee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG  189 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg  189 (658)
                      ..++.+++|+.+.|+||+++.+...++.+++.+.+.+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~   51 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE   51 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence            57889999999999999999999999988875544443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=89.75  E-value=1  Score=39.54  Aligned_cols=92  Identities=9%  Similarity=0.060  Sum_probs=64.7

Q ss_pred             cCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          142 TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       142 t~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      +.++.+.++. ++.+.+|=|+..--+   .....|.++|..+.....++...-.   .   +.+.++      + ..|++
T Consensus         7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~-~~~~i   70 (102)
T cd03066           7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLG------L-KMNEV   70 (102)
T ss_pred             CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcC------C-CCCcE
Confidence            3445677777 778888877765333   4566899999999766677665544   2   556665      4 47999


Q ss_pred             EEcCCCCCCCCCcccc-cCCCCHhHHHHHHHHh
Q 006171          221 VAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA  252 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y-~G~rs~~~Lv~fv~k~  252 (658)
                      ++++....   ....| .|..+.+.|.+|+...
T Consensus        71 ~l~~~~~e---~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          71 DFYEPFME---EPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             EEeCCCCC---CCcccCCCCCCHHHHHHHHHHh
Confidence            99976322   23669 8888999999998653

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=89.60  E-value=1.7  Score=39.76  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=38.4

Q ss_pred             CcHHHHHHHHhhccCceEEEEEeccc-----ccHhHHhhcCCC-CCCEEEEEeCC
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP  340 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~-----~s~~l~~~f~V~-~~Ptlvlfk~~  340 (658)
                      ..|.++.++..+.+.+.|..|.+.+.     .+..+..+++|. +.||+++|+.+
T Consensus        46 ~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~  100 (119)
T cd02952          46 AEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP  100 (119)
T ss_pred             hchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence            46778888888876788888876542     236799999998 99999999754

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=89.47  E-value=0.78  Score=40.57  Aligned_cols=91  Identities=15%  Similarity=0.260  Sum_probs=62.0

Q ss_pred             CCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (658)
Q Consensus       145 nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~  224 (658)
                      +.+..+...++.+|=|+..--.   .....|.++|..+.....++...-.   .   +.++++      +  .|++++|+
T Consensus        10 ~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~--~~~ivl~~   72 (104)
T cd03069          10 EFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYG------Y--GEGVVLFR   72 (104)
T ss_pred             HHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcC------C--CCceEEEe
Confidence            3455566677888877765433   4677899999999766677766544   2   566776      6  68899995


Q ss_pred             CCC--CC-CCCcccccCCCCHhHHHHHHHHh
Q 006171          225 PGC--KS-SDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       225 ~g~--~~-~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +..  .+ ......|.|..+.++|.+|+...
T Consensus        73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence            421  00 01235699999999999998753

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=89.35  E-value=4.2  Score=36.14  Aligned_cols=97  Identities=18%  Similarity=0.213  Sum_probs=55.7

Q ss_pred             EEEEEEcCCCh--hHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEecc-chHHHHHHHcccCCc
Q 006171          397 YCVILAGRLSP--ELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGE-AQDRYCSFYLFSETS  473 (658)
Q Consensus       397 lcVi~~~~~~~--~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~-~q~~~~~~f~~~~~~  473 (658)
                      -|+|++++..+  +++..++.+..+|+..               ...|++.-.+.-..+.++++ .-.++++-|..    
T Consensus        16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~---------------~aka~~k~~dap~~f~~a~ede~tdsLRDf~n----   76 (116)
T cd03071          16 PCLVLFVDSEDEGESEAAKQLIQPIAEKI---------------IAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTN----   76 (116)
T ss_pred             ceEEEEecccchhhHHHHHHHHHHHHHHH---------------HHHhhccCCCcceeeeeeccchHHHHHHHhcC----
Confidence            58888886433  4778889998888832               22333322233334444442 23666666621    


Q ss_pred             ccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHh
Q 006171          474 FETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII  548 (658)
Q Consensus       474 ~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~  548 (658)
                              ..+..|.+||+    |-..| -+|.      .   +.++.              |.+.+..+|++++
T Consensus        77 --------L~d~~P~LviL----Dip~r-~~~v------~---~~eeI--------------T~e~~~~fv~~yl  115 (116)
T cd03071          77 --------LPEAAPLLTIL----DMSAR-AKYV------M---DVEEI--------------TPAIVEAFVSDFL  115 (116)
T ss_pred             --------CCccCceEEEE----ecccc-ceEe------C---chHhc--------------CHHHHHHHHHHhh
Confidence                    23345999999    76664 3444      2   44333              4467777777764

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=89.20  E-value=0.52  Score=39.85  Aligned_cols=74  Identities=14%  Similarity=0.182  Sum_probs=46.9

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      ++.|..+||++|++..-.+++     +| +.+-.+|.++++......+..|      ...+|++++  ++..        
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~~--------   60 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDLS--------   60 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCEE--------
Confidence            567788999999886655532     12 3777888886554344444455      669999865  3321        


Q ss_pred             cCCCCHhHHHHHHHHh
Q 006171          237 EGELSVDAVTDWFATA  252 (658)
Q Consensus       237 ~G~rs~~~Lv~fv~k~  252 (658)
                      -+....+.|.+.+...
T Consensus        61 ~~Gf~~~~l~~~~~~~   76 (81)
T PRK10329         61 WSGFRPDMINRLHPAP   76 (81)
T ss_pred             EecCCHHHHHHHHHhh
Confidence            2345577777776543

>KOG3414 consensus Component of the U4/U6

Probab=88.84  E-value=0.64  Score=42.37  Aligned_cols=72  Identities=13%  Similarity=0.155  Sum_probs=59.0

Q ss_pred             Cccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171          147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (658)
Q Consensus       147 ~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~  224 (658)
                      +..|  .+.+.++|-|--+|.+-|.++-....++|..+...+.|.-||.++-   ..+-+-++      +...||+++|-
T Consensus        15 dqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV---~~~~~~~~------l~~p~tvmfFf   85 (142)
T KOG3414|consen   15 DQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV---PDFVKMYE------LYDPPTVMFFF   85 (142)
T ss_pred             HHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh---hhhhhhhc------ccCCceEEEEE
Confidence            3445  3678899999999999999999999999999998889999998843   34555555      88999999887


Q ss_pred             CCC
Q 006171          225 PGC  227 (658)
Q Consensus       225 ~g~  227 (658)
                      ++.
T Consensus        86 n~k   88 (142)
T KOG3414|consen   86 NNK   88 (142)
T ss_pred             cCc
Confidence            663

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=88.81  E-value=1.2  Score=44.50  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=34.1

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD  195 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e  195 (658)
                      .+|+.|.++||+.|..-.+.+.+++++++... .|..|+++.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~   69 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS   69 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            45667889999999999999999999997654 777777774

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PTZ00062 glutaredoxin; Provisional

Probab=88.65  E-value=6  Score=39.63  Aligned_cols=74  Identities=12%  Similarity=0.094  Sum_probs=48.9

Q ss_pred             cEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171          279 KVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (658)
Q Consensus       279 ~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~  354 (658)
                      ...|++|..    .+....+.+..++..| ..+.|..|.   .+       |+|...|++++|+++..- -.+.|. +..
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~---~d-------~~V~~vPtfv~~~~g~~i-~r~~G~-~~~   84 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVN---LA-------DANNEYGVFEFYQNSQLI-NSLEGC-NTS   84 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEc---cc-------cCcccceEEEEEECCEEE-eeeeCC-CHH
Confidence            355777732    2223456667788887 457777774   11       999999999999976431 224555 677


Q ss_pred             HHHHHHHhhcc
Q 006171          355 RLSEVMEQNKL  365 (658)
Q Consensus       355 ~L~~fi~~~~~  365 (658)
                      .|..++..+.-
T Consensus        85 ~~~~~~~~~~~   95 (204)
T PTZ00062         85 TLVSFIRGWAQ   95 (204)
T ss_pred             HHHHHHHHHcC
Confidence            78888877544

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=88.42  E-value=11  Score=43.27  Aligned_cols=172  Identities=11%  Similarity=0.069  Sum_probs=91.6

Q ss_pred             CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCc
Q 006171          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (658)
Q Consensus       154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~  233 (658)
                      .++-+.+|.+-|..|..+....+++++.- +.     |.+..+..               -...|++.+..+|..   ..
T Consensus        19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~-----i~~~~~~~---------------~~~~p~~~~~~~~~~---~~   74 (517)
T PRK15317         19 RPIELVASLDDSEKSAELKELLEEIASLS-DK-----ITVEEDSL---------------DVRKPSFSITRPGED---TG   74 (517)
T ss_pred             CCEEEEEEeCCCchHHHHHHHHHHHHHhC-Cc-----eEEEEccC---------------CCCCCEEEEEcCCcc---ce
Confidence            34444444557999988776666666533 22     22221110               014699998876543   45


Q ss_pred             ccccCCCCHhHHHHHHHHhhc-cCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCC-CCCc--HHHHHHHHhhccCce
Q 006171          234 TRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ERAS--PFVRQISRNYWAYAS  308 (658)
Q Consensus       234 ~~Y~G~rs~~~Lv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~-~~~~--~~~~~~A~~~~~~~~  308 (658)
                      ..|.|--.=..+-.|+...+. +.+... ++ ++ ..+.+.... ..+.+. |.+.+| -|+.  .....+|.. ...+.
T Consensus        75 i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~~-~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~  149 (517)
T PRK15317         75 VRFAGIPMGHEFTSLVLALLQVGGHPPK-LD-QE-VIEQIKALD-GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNIT  149 (517)
T ss_pred             EEEEecCccHHHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhcC-CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCce
Confidence            788887776777777755422 122222 22 12 223333321 223333 334433 2332  222223332 23444


Q ss_pred             EEEEEeccc-ccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          309 FAFVLWREE-ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       309 f~~v~~~~~-~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      +-.+   +. ..+++.++|++.+.|++++   ++ + ..+.|..+.+.|.+.+..
T Consensus       150 ~~~i---d~~~~~~~~~~~~v~~VP~~~i---~~-~-~~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        150 HTMI---DGALFQDEVEARNIMAVPTVFL---NG-E-EFGQGRMTLEEILAKLDT  196 (517)
T ss_pred             EEEE---EchhCHhHHHhcCCcccCEEEE---CC-c-EEEecCCCHHHHHHHHhc
Confidence            3333   33 3488999999999999976   22 2 347888777777766654

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=88.40  E-value=1.2  Score=46.49  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=44.1

Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeee-----e-cCCCChHHHHHHHHhhcc
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----Y-YGSFNNSRLSEVMEQNKL  365 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~-----y-~g~~~~~~L~~fi~~~~~  365 (658)
                      ...+..+|..|. .++|..+....+.   +..+|.+...|||++|++|......     . ...++..+|..|+..+..
T Consensus       165 n~~L~~LA~kyp-~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~  239 (265)
T PF02114_consen  165 NSCLECLARKYP-EVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV  239 (265)
T ss_dssp             HHHHHHHHHH-T-TSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred             HHHHHHHHHhCC-ceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence            344566888874 6889888765542   6788999999999999986532221     1 224677889999887543

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK13191 putative peroxiredoxin; Provisional

Probab=88.27  E-value=2.1  Score=43.23  Aligned_cols=41  Identities=7%  Similarity=-0.067  Sum_probs=33.5

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD  195 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e  195 (658)
                      .+|+.|.++||+.|..-.+.+.+++.+++... .|..|+++.
T Consensus        36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds   77 (215)
T PRK13191         36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS   77 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34447789999999999999999999997654 777788773

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=87.34  E-value=15  Score=42.10  Aligned_cols=172  Identities=13%  Similarity=0.044  Sum_probs=88.5

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~  232 (658)
                      +.+.|+.|.. -|..|..+....+++++.- +.+.+-.-+-             +      ....|++.+..+|..   .
T Consensus        19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~-------------~------~~~~p~~~~~~~~~~---~   74 (515)
T TIGR03140        19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTA-------------D------TLRKPSFTILRDGAD---T   74 (515)
T ss_pred             CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecC-------------C------cCCCCeEEEecCCcc---c
Confidence            3444555555 5888877666555555432 2222211111             1      225699988866643   3


Q ss_pred             cccccCCCCHhHHHHHHHHhhc-cCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCC-CCCcH--HHHHHHHhhccCc
Q 006171          233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ERASP--FVRQISRNYWAYA  307 (658)
Q Consensus       233 ~~~Y~G~rs~~~Lv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~-~~~~~--~~~~~A~~~~~~~  307 (658)
                      ...|.|--.=..+..|+...+. +.+... ++. + ..+.+...+ ..+.+. |.+..| -|+..  ....++... ..+
T Consensus        75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~~-~-~~~~~~~~~-~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i  149 (515)
T TIGR03140        75 GIRFAGIPGGHEFTSLVLAILQVGGHGPK-LDE-G-IIDRIRRLN-GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNI  149 (515)
T ss_pred             ceEEEecCCcHHHHHHHHHHHHhcCCCCC-CCH-H-HHHHHHhcC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCc
Confidence            5788887766677777755321 122211 222 2 223333321 223333 344443 23321  112233321 233


Q ss_pred             eEEEEEeccc-ccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHH
Q 006171          308 SFAFVLWREE-ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       308 ~f~~v~~~~~-~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~  361 (658)
                      .   +.+.+. ..+++.++|++.+.|++++   ++ + ..+.|..+.+.+.+.+.
T Consensus       150 ~---~~~id~~~~~~~~~~~~v~~VP~~~i---~~-~-~~~~g~~~~~~~~~~l~  196 (515)
T TIGR03140       150 S---HTMIDGALFQDEVEALGIQGVPAVFL---NG-E-EFHNGRMDLAELLEKLE  196 (515)
T ss_pred             e---EEEEEchhCHHHHHhcCCcccCEEEE---CC-c-EEEecCCCHHHHHHHHh
Confidence            3   333343 3488999999999999987   22 2 34788877776655554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=87.24  E-value=1.3  Score=46.15  Aligned_cols=43  Identities=14%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD  195 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e  195 (658)
                      ++++++.|| +.||+.|..-.|.+.+..++++... .|..|.++.
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds  142 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS  142 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            456777778 8999999999999999999997654 788888874

>TIGR02740 TraF-like TraF-like protein

Probab=86.62  E-value=3.3  Score=43.32  Aligned_cols=82  Identities=12%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccc---------cHhHHhhcCCCCCCEEEEEeCCCCCe-
Q 006171          279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKP-  344 (658)
Q Consensus       279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~---------s~~l~~~f~V~~~Ptlvlfk~~~~~p-  344 (658)
                      ++.+++| .+.   |....|.+..++..|.  +.+..|.+....         ...+.++|||...|+++++++++... 
T Consensus       167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~  244 (271)
T TIGR02740       167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT  244 (271)
T ss_pred             CeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence            3555555 332   2334677777887763  445555443211         24588999999999999998744332 


Q ss_pred             eeecCCCChHHHHHHHHh
Q 006171          345 VVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       345 ~~y~g~~~~~~L~~fi~~  362 (658)
                      .+..|.++.+.|.+.+..
T Consensus       245 ~v~~G~~s~~eL~~~i~~  262 (271)
T TIGR02740       245 PIGFGVMSADELVDRILL  262 (271)
T ss_pred             EEEeCCCCHHHHHHHHHH
Confidence            235688888888887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=86.20  E-value=2.5  Score=37.87  Aligned_cols=69  Identities=25%  Similarity=0.311  Sum_probs=44.7

Q ss_pred             hhhhhhhcCCCcEEEEEEeCCCCC----C--cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFSKTGER----A--SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~~~~~----~--~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      ++.|+...   ...|+||.+...+    .  ...+=.+.++|......+.+.  ......|..+||+..+|++++|+++.
T Consensus        19 ld~~l~~~---~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~   93 (107)
T PF07449_consen   19 LDAFLAAP---GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGR   93 (107)
T ss_dssp             HHHHHHCC---SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred             HHHHHhCC---CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCE
Confidence            78888754   3567888643222    1  123344667776666555554  33357899999999999999999863

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PRK13599 putative peroxiredoxin; Provisional

Probab=86.13  E-value=1.3  Score=44.74  Aligned_cols=42  Identities=10%  Similarity=-0.011  Sum_probs=35.7

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccc
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI  196 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~  196 (658)
                      .+|+.|.++||+.|..-.+.+.++..+++... .+..|+++..
T Consensus        31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~   73 (215)
T PRK13599         31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV   73 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            35678889999999999999999999997654 8888998854

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=86.05  E-value=1.3  Score=40.90  Aligned_cols=53  Identities=21%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChh
Q 006171           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPL   91 (658)
Q Consensus        38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~   91 (658)
                      .-..||||++..+.++|.+.|.+|-...+|+++ ++.=.=.+|..|.|.|..+.
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence            445899999999999999999999999999976 44445566788888776443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=85.99  E-value=3.3  Score=39.45  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=35.3

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ..+.+.|++...|+++++.+++.-...+.|..+.+.+.++++.-
T Consensus       128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence            56889999999999999976664444578888888899888753

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=85.99  E-value=0.87  Score=37.21  Aligned_cols=53  Identities=13%  Similarity=0.100  Sum_probs=34.6

Q ss_pred             EEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       158 V~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      +.|..++|++|++....+++.      .+.+-.+|.++++......++.|      ..++|++.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~   54 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA   54 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcC------CcccCEEEE
Confidence            456779999998877555431      23677788886554333334446      669999755

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=85.86  E-value=1.1  Score=36.64  Aligned_cols=53  Identities=11%  Similarity=0.016  Sum_probs=34.8

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      ++.|+.|||++|++..-.+++.      -+.+-.+|..++.. ...+.+..+      -..+|++.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g------~~~vP~v~   56 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTG------SSVVPQIF   56 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence            5678899999998877555542      13677778875432 233555555      45889874

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=85.80  E-value=0.57  Score=38.85  Aligned_cols=52  Identities=12%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             EEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEE
Q 006171          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       158 V~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      +.|..+||++|.+....+++..      +.+-.+|.+.++ ....+.+..+      ...+|+|.
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i~   54 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSG------RRTVPQIF   54 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhC------CCCcCEEE
Confidence            5677899999999887776432      356666766443 2233444445      66899974

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=85.48  E-value=2.8  Score=48.69  Aligned_cols=62  Identities=13%  Similarity=0.178  Sum_probs=44.3

Q ss_pred             HHhhccCceEEEEEeccc--ccHhHHhhcCCCCCCEEEEEeCCCCC--eeeecCCCChHHHHHHHHh
Q 006171          300 SRNYWAYASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       300 A~~~~~~~~f~~v~~~~~--~s~~l~~~f~V~~~Ptlvlfk~~~~~--p~~y~g~~~~~~L~~fi~~  362 (658)
                      ...++ .+.+..+++.+.  +..++.++|++.+.||+++|+.+++.  ...+.|..+.+++.+++++
T Consensus       503 ~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~  568 (571)
T PRK00293        503 QQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ  568 (571)
T ss_pred             HHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence            33443 455666766543  23679999999999999999755443  2346888899999998876

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=85.09  E-value=1.2  Score=36.32  Aligned_cols=53  Identities=8%  Similarity=0.075  Sum_probs=33.6

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCccccee-eeeEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRR-GLPSLV  221 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~-~yPTl~  221 (658)
                      ++.|..+||++|.+....+++.      .+.+-.+|.++++. ...+-+..+      .. ++|+|.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v~   56 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSG------GRRTVPQIF   56 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhC------CCCccCEEE
Confidence            4677889999999877666542      13667778775432 222334444      44 889774

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=83.96  E-value=1.3  Score=35.98  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=41.9

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      ++.|..+||+.|.+..-.+++.      .+.+-.+|.+++.....+-+..|      ...+|.|  |.+|..        
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~~--------   60 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGEL--------   60 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCEE--------
Confidence            5778899999998875444421      23666777775443333434445      6789987  444521        


Q ss_pred             cCCCCHhHHHHHH
Q 006171          237 EGELSVDAVTDWF  249 (658)
Q Consensus       237 ~G~rs~~~Lv~fv  249 (658)
                      -|  ..++|.+|+
T Consensus        61 ig--g~~~l~~~l   71 (72)
T cd03029          61 IG--GSDDLEKYF   71 (72)
T ss_pred             Ee--CHHHHHHHh
Confidence            22  256777764

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=82.87  E-value=2.4  Score=48.03  Aligned_cols=55  Identities=9%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             CCCCCCcHHHHHHHHhhccCceEEEEEecccc---cHhHHhhcCCCCCCEEEEEeCCC
Q 006171          287 KTGERASPFVRQISRNYWAYASFAFVLWREEE---SSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       287 ~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~---s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      .+|-...|.++.+|....+-.....|...+|.   +..+|..|+|..+|+|.+|+.+.
T Consensus        70 GhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~  127 (606)
T KOG1731|consen   70 GHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDS  127 (606)
T ss_pred             hhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCcc
Confidence            34456789999999988777777888888884   36799999999999999998864

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.82  E-value=6.3  Score=40.37  Aligned_cols=71  Identities=21%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          288 TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       288 ~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      .|+...|.+..+|.+|. ...|..|.+..|  +..+..+||+..||.++|+++... ..+.|. +...|++-+.++
T Consensus        35 PCk~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~ki-d~~qGA-d~~gLe~kv~~~  105 (288)
T KOG0908|consen   35 PCKRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGVKI-DQIQGA-DASGLEEKVAKY  105 (288)
T ss_pred             hHHhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCeEe-eeecCC-CHHHHHHHHHHH
Confidence            34557899999999984 456777776665  467889999999999999976533 236665 666677766654

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=81.06  E-value=1.3  Score=44.26  Aligned_cols=41  Identities=15%  Similarity=0.216  Sum_probs=30.6

Q ss_pred             CCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeec
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL  193 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc  193 (658)
                      +++-+|+|++..|+||.++.|.+   +.+.+.+.+.+.+..+..
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            45679999999999999999865   677777655444544443

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=80.64  E-value=1.6  Score=38.30  Aligned_cols=56  Identities=14%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhH----HHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~----Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.|-.|||++|++..-.+++..      +.+..+|.++++....    +.+..|      ...+|+|  |.+|
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi~g   69 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FVGG   69 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EECC
Confidence            67788899999988776554331      3455677764432222    333334      5688987  4555

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	658
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		7e-12
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		7e-11
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		7e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		1e-04
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		4e-04

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 64  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 116
Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 176
Query: 215 RGLPSL 220
            G+ ++
Sbjct: 177 SGMAAV 182

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 83  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 135
Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS GS      +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 195
Query: 215 RGLPSL 220
            G+ ++
Sbjct: 196 SGMAAV 201

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVY 99
           YD LG+ P ++ +++K+ Y K + K++  +    T  F +I  A+E+L DP  +  YD Y
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY 70
Query: 100 GID 102
           G++
Sbjct: 71  GLE 73

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 38  SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYD 97
           ++YD LG+KP ++ E++K+AY K + K++  +       F +I  AYE+L+D   +  YD
Sbjct: 7   TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
Query: 98  VYG 100
             G
Sbjct: 67  KGG 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDV 98
           +YD LG+KP +S  ++K+AY K + K++  +       F +I  AYE+L+D   ++ YD 
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69
Query: 99  YG 100
            G
Sbjct: 70  GG 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	658
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-20
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-11
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-04
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	1e-08
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-08
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	5e-08
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-07
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	5e-07
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	7e-07
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	7e-07
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	7e-07
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	8e-07
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-06
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-06
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	3e-06
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	3e-06
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	4e-06
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-05
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-05
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-05
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-05
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-05
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-05
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	5e-05
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	5e-05
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-04
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-04
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-04

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 87.6 bits (217), Expect = 6e-20
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K     N      +  DFLKI  AYE+L D   ++ 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRKK 63

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG        + + +  G +  S                   +   +F +  +  + 
Sbjct: 64  YDKYG-----E--KGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 116

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215
           W +  YS G   C   +  W+  A  ++G+   G V  GD R    L   K +       
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDR---MLCRMKGV------N 167

Query: 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW 248
             PSL  F  G  +     ++ G+ S +++  +
Sbjct: 168 SYPSLFIFRSGMAA----VKYNGDRSKESLVAF 196

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 78.6 bits (193), Expect = 2e-15
 Identities = 70/498 (14%), Positives = 148/498 (29%), Gaps = 84/498 (16%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K     N      +  DFLKI  AYE+L D   ++ 
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRKK 82

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG            E +    Y                    +   +F +  +  + 
Sbjct: 83  YDKYGEKGLEDNQGGQYESWSYYRYDF-------GIYDDDPEIITLERREFDAAVNSGEL 135

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFR 214
           W +  YS GS      +  W+  A  ++          G +R+   +  + + + ++   
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVD----------GLLRIGAVNCGDDRMLCRMKGV 185

Query: 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAK 274
              PSL  F  G  +      + G+ S +++  +   A+  +             N +  
Sbjct: 186 NSYPSLFIFRSGMAAVK----YNGDRSKESLVAF---AMQHVRSTVTELSTGNFVNAIET 238

Query: 275 TGPHKVKVI--FFSKTGERASPFVR-QISRNYWAYASFAFVLWREEESSIWWNTFEVESA 331
                V  +  F SK  +  +   R ++S       +  +V    ++S     + +  ++
Sbjct: 239 AFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLC--KSLDTTAS 296

Query: 332 PAIVFLK-DPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAG 390
               F               F NS  ++ +    +  LP    +++              
Sbjct: 297 TTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSAN----QLEDRLAHH 352

Query: 391 SDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRL 450
                ++         PEL K                                  +N+ +
Sbjct: 353 RWLVFFHFGKNENANDPELKK-----------------------------LKTLLKNEHI 383

Query: 451 TFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPR 510
                D  +    CS     +               P L + + +     +    ++   
Sbjct: 384 QVVRFDCSSAPGICSDLYVFQ---------------PSLAVFKGQGTKEYEIHHGKKILY 428

Query: 511 NIWDAMQEQEVDPASQLV 528
           +I    +E      + L 
Sbjct: 429 DILAFAKESVNSHVTTLG 446

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 65.5 bits (159), Expect = 3e-11
 Identities = 43/265 (16%), Positives = 89/265 (33%), Gaps = 26/265 (9%)

Query: 109 EKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC 168
           ++    +G++    I     ++ +  V     +  ++FP+   D +PWL+  ++  S   
Sbjct: 416 KEYEIHHGKKILYDILAFAKESVNSHVT---TLGPQNFPA--SDKEPWLVDFFAPWSPPS 470

Query: 169 GQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228
                  +  + LL G    G +   D  +   L     I      +  P+ V F     
Sbjct: 471 RALLPELRKASTLLYGQLKVGTL---DCTIHEGLCNMYNI------QAYPTTVVFNQS-- 519

Query: 229 SSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT 288
               +  +EG  S + + ++      + P +   T  +  +    +       V F+S  
Sbjct: 520 ---SIHEYEGHHSAEQILEFIEDL--RNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPW 574

Query: 289 G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV 345
               +   P  ++++R      +   V   +  S        V+  P I F      K  
Sbjct: 575 SHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFC--TQENVQRYPEIRFYPQKSSKAY 632

Query: 346 VYYGSFNNSRLSEVMEQNKLQELPQ 370
            Y+     +R +  +    L  LPQ
Sbjct: 633 QYHSYNGWNRDAYSLRSWGLGFLPQ 657

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 34/260 (13%), Positives = 78/260 (30%), Gaps = 30/260 (11%)

Query: 132 DHSVHAFNVVTSEDFPSIFHDSK---PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANT 188
           D    +   +T   F  +    K    W++  YS  S+        WK +A  L G+ N 
Sbjct: 539 DLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINV 598

Query: 189 GMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF-EGELSVDAVTD 247
           G V   D         ++ +      +  P +  +P     +     +        ++  
Sbjct: 599 GSV---DCGQYHSFCTQENV------QRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRS 649

Query: 248 WFATAILKLPRIFYYTKESMGKNFLAKTGPHK--VKVIFFSK---TGERASPFVRQISRN 302
           W    + +       + +   + F  K    K    V F++      +  +P    ++R 
Sbjct: 650 WGLGFLPQA------SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARM 703

Query: 303 YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV---YYGSFNNSRLSEV 359
                    V   +           +++ P++   +    K  +      S +   ++ +
Sbjct: 704 IKGKVRAGKV-DCQAYPQT-CQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAAL 761

Query: 360 MEQNKLQELPQLRSVTSMEL 379
           +         Q++     EL
Sbjct: 762 IYGKLETLQSQVKRNKD-EL 780

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 43/347 (12%), Positives = 103/347 (29%), Gaps = 55/347 (15%)

Query: 124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE 183
           D P  D  D  +     V ++++ ++F   +   +  +             ++    +LE
Sbjct: 5   DFPEYDGVDRVI----NVNAKNYKNVFKKYEVLALLYHEPPEDDK-ASQRQFEMEELILE 59

Query: 184 GIANTGMVELGDIRLATHLAER-KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSV 242
             A   ++E   +      +E+   + +        S+  F         +  ++GE S 
Sbjct: 60  LAAQ--VLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED-----EVIEYDGEFSA 112

Query: 243 DAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRN 302
           D + ++    +     +    +E   + F       K+   F +K  E    F ++ +  
Sbjct: 113 DTLVEFLLDVLEDPVELIEGEREL--QAFENIEDEIKLIGYFKNKDSEHYKAF-KEAAEE 169

Query: 303 YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVME 361
           +  Y  F      +                 I F +    +PV       +   +   +E
Sbjct: 170 FHPYIPFFATFDSKVAKK------LTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVE 223

Query: 362 QNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQE 421
           +++   L +L+  +  E             D    + V  A    P+  +  E ++    
Sbjct: 224 EHRRSTLRKLKPESMYET---------WEDDMDGIHIVAFAEEADPDGYEFLEILK---- 270

Query: 422 TLLSDDESNAADTDQSLAPAAVAFRNKR-LTFAWLDGEAQDRYCSFY 467
                               A    +   L+  W+D +       ++
Sbjct: 271 ------------------SVAQDNTDNPDLSIIWIDPDDFPLLVPYW 299

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 56.5 bits (135), Expect = 2e-08
 Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 140 VVTSEDFPSIFHDS-KPWLIQVYSDGSYLCG---QFSGAWKTIAALLEGIANTGMVELGD 195
           ++ ++        S   W ++ ++     CG    F+  WK +A  ++       + L  
Sbjct: 16  LLDADSVRPTVLGSSSAWAVEFFASW---CGHAIAFAPTWKELANDVKD--WRPALNLAV 70

Query: 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILK 255
           +  A        + + F   G P++  F    K+    T      +V  +      A+  
Sbjct: 71  LDCAEE--TNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128

Query: 256 ----LPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAY--ASF 309
                P      + +   +       +K   +         S   R+++ +   Y   + 
Sbjct: 129 HRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFE-REDSYLGREVTLDLSQYHAVAV 187

Query: 310 AFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK 364
             VL  E +     N F V   P+   L   G    V     + S  +  +    
Sbjct: 188 RRVLNTESDL---VNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLP 239

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 86/594 (14%), Positives = 166/594 (27%), Gaps = 182/594 (30%)

Query: 40  YDALGIKPYSSVEQ-VKEA----YEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +  L  K    V++ V+E     Y+   S   + +  PS    + I+    L  D     
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 95  NYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDH-------SVHAFNVVTSEDFP 147
            Y+V  +   L + + + E         + +               +  A +V  S    
Sbjct: 128 KYNVSRLQPYLKLRQALLEL---RPAKNVLI-------DGVLGSGKTWVALDVCLSYKVQ 177

Query: 148 SIFHDSKPWL--IQVYSDGSY------LCGQFSGAWKTIAALLEGIANTGM-VELGDIRL 198
                   WL      S  +       L  Q    W    +  +  +N  + +      L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT---SRSDHSSNIKLRIHSIQAEL 234

Query: 199 ATHLAERKPIGQIFFRRGLPSLV-----------AFPPGCK--------------SSDCM 233
              L  +       +   L  LV           AF   CK              S+   
Sbjct: 235 RRLLKSKP------YENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 234 TRFEGELSVDAVTD---------WFATAILKLPRIFYYTKESMGKNFLAKTG-PHKVKVI 283
           T    +     +T          +       LPR                T  P ++ +I
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------------EVLTTNPRRLSII 333

Query: 284 FFSKTGERASPFVRQISRNYWAYASFAFVLWREE---ESSIWWNTFEVESAPAI------ 334
                 E     +     + W + +      +     ESS+  N  E    PA       
Sbjct: 334 -----AESIRDGLATW--DNWKHVNC----DKLTTIIESSL--NVLE----PAEYRKMFD 376

Query: 335 ---VFLKDPGVKPVVYYGSFNNSRL-SEVMEQNKLQELPQLRSVTSMELGCDARGYSRAG 390
              VF     +  ++       S +  +V++ + +  + +L   + +E        S   
Sbjct: 377 RLSVFPPSAHIPTILL------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--- 427

Query: 391 SDTTIWYCVILAGRLSPELNKMRETIRRV-----------QETLLSDDESN--------- 430
               I   + L   L  +L       R +            + L+               
Sbjct: 428 ----I-PSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 431 --AADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRD-MSDVP 487
               +  + +      FR   L F +L  E + R+        T++   G+  + +    
Sbjct: 481 LKNIEHPERMT----LFRMVFLDFRFL--EQKIRH------DSTAWNASGSILNTLQQ-- 526

Query: 488 RLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIA 541
              +  YK    +++ K ER    I D + + E +     ++    +D + +IA
Sbjct: 527 ---LKFYKPYICDNDPKYERLVNAILDFLPKIEEN-----LICSKYTD-LLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 58/225 (25%)

Query: 24  LFYQLVVLPRSFP-PSHYDALGI----KPYSSVEQVKEAYEKFS--SKWNSGEEIPSTAD 76
           +F +L V P S   P+    L +       S V  V     K+S   K      I     
Sbjct: 374 MFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI----- 426

Query: 77  FLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATD---- 132
                    +  +   K   +       LH    + + Y        D  +    D    
Sbjct: 427 -----SIPSIYLELKVKLENEY-----ALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 133 -HSV-HAFNVVTSED---FPSIFHDSKPWLIQ-VYSDGSYLCGQFSGAWKTIAALLEGIA 186
            H   H  N+   E    F  +F D + +L Q +  D +        AW    ++L    
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDST--------AWNASGSIL---- 521

Query: 187 NTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230
           NT    L  ++    ++ +  P     + R + +++ F P  + +
Sbjct: 522 NT----LQQLKFYKPYICDNDPK----YERLVNAILDFLPKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 61/409 (14%), Positives = 123/409 (30%), Gaps = 129/409 (31%)

Query: 243 DAVTDWFATAILKLPR-IFYYTKESMGKNFLAKTGPHKVKVIFF---SKTGERASPFVRQ 298
             V ++    +  +P+ I   +KE +    ++K        +F+   SK  E    FV +
Sbjct: 28  AFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 299 ISR-NY-WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356
           + R NY +  +       + E+      T            +D        +  +N SRL
Sbjct: 86  VLRINYKFLMSP-----IKTEQRQPSMMTRMYIEQ------RDRLYNDNQVFAKYNVSRL 134

Query: 357 SEVME-QNKLQELPQLRSVT--SMELGCDARGYS----RAGSDTTI---------WYCVI 400
              ++ +  L EL   ++V    + LG    G +           +         W  + 
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGV-LGS---GKTWVALDVCLSYKVQCKMDFKIFW--LN 188

Query: 401 LAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQ 460
           L    SPE       +  +Q+ L   D +  + +D S         N +L    +  E +
Sbjct: 189 LKNCNSPE-----TVLEMLQKLLYQIDPNWTSRSDHS--------SNIKLRIHSIQAELR 235

Query: 461 DRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQE 520
                  L     +E C           L ++                  N+ +A     
Sbjct: 236 R------LLKSKPYENC-----------LLVLL-----------------NVQNAKAWNA 261

Query: 521 VDPASQLVV--RYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVPEDSEPLLTRS 578
            + + ++++  R+          K V++ +    +  +          +   S  L    
Sbjct: 262 FNLSCKILLTTRF----------KQVTDFLSAATTTHIS---------LDHHSMTLTPDE 302

Query: 579 AQSLFSKSIGMKQRIRNIMGQCYDYLGD-PR----IGPAL--LLAALMS 620
            +SL  K +  +               D PR      P    ++A  + 
Sbjct: 303 VKSLLLKYLDCR-------------PQDLPREVLTTNPRRLSIIAESIR 338

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+KP +S  ++K+AY K + K+    N          F +I  AYE+L+D   ++ 
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA----EQFKQISQAYEVLSDEKKRQI 66

Query: 96  YDVYG 100
           YD  G
Sbjct: 67  YDQGG 71

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+ P ++ +++K+ Y K + K+     +G+       F +I  A+E+L DP  +  
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT----EKFKEISEAFEILNDPQKREI 66

Query: 96  YDVYG 100
           YD YG
Sbjct: 67  YDQYG 71

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ L +   +S + +K+AY + + +W    N   +  +   F ++  AYE+L+D   +  
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 96  YDVYG 100
           YD YG
Sbjct: 65  YDRYG 69

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG++  +S E +K+AY K + +W    N   +  +   F  +  AYE+L+D   +  
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 96  YDVYG 100
           YD  G
Sbjct: 72  YDRAG 76

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   ++ + +K++Y K + K+    N      +   F +I  A+ +LTD   +  
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP-EAADKFKEINNAHAILTDATKRNI 78

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRI 123
           YD YG      +   V EQ+GEE+ +  
Sbjct: 79  YDKYG-----SLGLYVAEQFGEENVNTY 101

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ L +   +S E +K+AY K + KW    N   +  +   F ++  AYE+L+D   +  
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 96  YDVYG 100
           YD YG
Sbjct: 72  YDRYG 76

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD-----FLKIQYAYELLTD 89
            Y  LG  P +++  +K+ Y+K    +     S +    T +     F++I  A+++L +
Sbjct: 12  WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71

Query: 90  PLWKRNYDVYG 100
              KR YD+  
Sbjct: 72  EETKREYDLQR 82

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 40  YDALGI-KPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD--FLKIQYAYELLTDPLW 92
           YD L + +     +++ +AY   + K        +E    A+  F  I  AYE L D   
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 93  KRNYDVYGIDEQLHILEKVREQYGEESYSRIDL 125
           K NYD Y  D          + Y   +  ++DL
Sbjct: 78  KTNYDYYL-DHPDQRFYNYYQYYRLRAAPKVDL 109

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S E++K AY + + ++    N      +   F +I  AY++L+DP  +  
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG--AEEKFKEIAEAYDVLSDPRKREI 63

Query: 96  YDVYG 100
           +D YG
Sbjct: 64  FDRYG 68

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+   ++  Q+K AY +    +    NSG    +   F +I  AY +L     +R 
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA-EAAERFTRISQAYVVLGSATLRRK 78

Query: 96  YDVYG 100
           YD   
Sbjct: 79  YDRGL 83

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 37/381 (9%), Positives = 97/381 (25%), Gaps = 65/381 (17%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
            + +E+   I +++   L+  Y+D           ++  + +++            +  A
Sbjct: 9   SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNE----NQVVFA 64

Query: 200 THLAER-KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR 258
               ++   I Q +     P+L  F  G         + G+ SV A+ D+      K   
Sbjct: 65  RVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKRE---YRGQRSVKALADYIRQQ--KSDP 119

Query: 259 IFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEE 318
           I      +            +  + +F +          +++       +F        +
Sbjct: 120 IQEIRDLAEITTLDRS---KRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSK 176

Query: 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVMEQNKLQELPQLRSVTSM 377
                          I          +VY G+  N       ++   +  + ++      
Sbjct: 177 P------ERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGE 230

Query: 378 ELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQS 437
           EL  +            +                            + +D  +       
Sbjct: 231 ELTEEGL--------PFLILFH------------------------MKEDTESLEIFQNE 258

Query: 438 LAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRN 497
           +A   ++ +   + F   D +           +              D P + I  ++  
Sbjct: 259 VARQLISEKG-TINFLHADCDKFRHPLLHIQKTPA------------DCPVIAIDSFRHM 305

Query: 498 TTEDEAKIERKPRNIWDAMQE 518
               + K    P  +   + +
Sbjct: 306 YVFGDFKDVLIPGKLKQFVFD 326

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD-----FLKIQYAYELLTDP 90
           Y  LG  P +++  +K+ Y+K    +     S +    T +     F++I  A+++L + 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 91  LWKRNYDVYG 100
             K+ YD+  
Sbjct: 79  ETKKKYDLQR 88

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG    SSVEQ+   ++  + +     +      +   F K+Q A E+LT+   +  
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDKHPENP-KAVETFQKLQKAKEILTNEESRAR 81

Query: 96  YDVYG 100
           YD + 
Sbjct: 82  YDHWR 86

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG+   +   ++++AY++ + K+    N G++  + A F +I+ AYE+LTD   +  
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 96  YDVYG 100
           YD YG
Sbjct: 65  YDQYG 69

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG+   +S E +K+AY + + K+    N      +T  F  I  AY +L++P  ++ 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG--ATEAFKAIGTAYAVLSNPEKRKQ 67

Query: 96  YDVYG 100
           YD +G
Sbjct: 68  YDQFG 72

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S   +K+AY+K + +W    N      +   F++I  AYE+L++   + N
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG--AEDRFIQISKAYEILSNEEKRTN 77

Query: 96  YDVYG 100
           YD YG
Sbjct: 78  YDHYG 82

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 40  YDALGIKP--YSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWK 93
            D LG++   + ++  +++AY K   ++       EE        K+   Y+ + D +  
Sbjct: 11  MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK-----MKKMNTLYKKMEDGVKY 65

Query: 94  RNYDVYGIDEQ 104
            +   +G    
Sbjct: 66  AHQPDFGGFWD 76

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 49/419 (11%), Positives = 99/419 (23%), Gaps = 75/419 (17%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
            + ++ F          L + ++     C   +  +   A  L            +I LA
Sbjct: 18  KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---------KNITLA 68

Query: 200 THLAER-KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR 258
                  + +       G PSL  F     ++     +EG  + +A+  +          
Sbjct: 69  QIDCTENQDLCMEHNIPGFPSLKIFKNSDVNN--SIDYEGPRTAEAIVQFMIKQSQ---- 122

Query: 259 IFYYTKESMGKNFLAKTGPHKVKVIFFSKT-GERASPFVRQISRNYWAYASFAFVLWREE 317
                  +    +LA        ++   K   +  + F             ++       
Sbjct: 123 -PAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATF-------------YSMANKHFN 168

Query: 318 ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSM 377
           +          +     ++L     +PVVY G   +   ++V E+    E          
Sbjct: 169 DYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVE---------- 218

Query: 378 ELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQS 437
                                +   G +   +             L  +DE    +    
Sbjct: 219 --------------------ALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPL 258

Query: 438 LAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRN 497
               A   R   + F  +D     R+       E               P   I     +
Sbjct: 259 FTELAKKNRGL-MNFVSIDARKFGRHAGNLNMKE-------------QFPLFAIHDMTED 304

Query: 498 TTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDL 556
                 ++  +  +        E      LV  +   D  P +        QD     L
Sbjct: 305 LKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQL 363

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+   +S  Q+K+A+ K + K+    N   +  + A F +I  AYE L+D   ++ 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD--AEAKFREIAEAYETLSDANRRKE 67

Query: 96  YDVYG 100
           YD  G
Sbjct: 68  YDTLG 72

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S +++K+AY + + K+    N  +   +   F ++  AYE+L+D + ++ 
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP-KAKEKFSQLAEAYEVLSDEVKRKQ 68

Query: 96  YDVYG 100
           YD YG
Sbjct: 69  YDAYG 73

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 23/234 (9%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
           V+   +F +   D    L++ Y+     C QF+  ++ IA +L+       + +  I   
Sbjct: 19  VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPP--IPVAKIDAT 76

Query: 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR- 258
           +       +   F   G P++     G ++ D    +EG  + + +              
Sbjct: 77  SA----SVLASRFDVSGYPTIKILKKG-QAVD----YEGSRTQEEIVAKVREVSQPDWTP 127

Query: 259 IFYYTKESMGKNFLAKTGPHKVKVIFFSKTG----ERASPFVRQISRNYWAYAS---FAF 311
               T     +NF        + ++ F        ++ +P   + ++     +     A 
Sbjct: 128 PPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAK 187

Query: 312 VLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365
           V    E        F+V   P +   +  G +P  Y G      + + M +   
Sbjct: 188 VDATAETDLA--KRFDVSGYPTLKIFRK-G-RPYDYNGPREKYGIVDYMIEQSG 237

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 27/236 (11%)

Query: 140 VVTSEDFPSIFHDS-KPWLIQVYSDGSYLCG---QFSGAWKTIAALLEGIANTGMVELGD 195
           ++ ++        S   W ++ ++     CG    F+  W  +A  ++       + L  
Sbjct: 16  LLQADTVRGAVLGSRSAWAVEFFAS---WCGHCIAFAPTWXALAEDVKAWRPA--LYLAA 70

Query: 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILK 255
           +  A        + + F   G P++  F     +            V  + +    A+  
Sbjct: 71  LDCAEE--TNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128

Query: 256 LPRIFYYTKES-------MGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYAS 308
               +                 F A+     + +IF        S   R+++ +   +  
Sbjct: 129 HHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXG----GSYLAREVALDLSQHKG 184

Query: 309 --FAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362
                VL  E         F V   P+   L   G    V     + S  +  +++
Sbjct: 185 VAVRRVLNTEANVV---RKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQR 237

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 30  VLPRSFPPSHYDALGIKP--YSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYA 83
           VL R       D LG++   + ++  +++AY K   ++       EE        K+   
Sbjct: 4   VLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK-----MKKMNTL 58

Query: 84  YELLTDPLWKRNYDVYG 100
           Y+ + D +   +   +G
Sbjct: 59  YKKMEDGVKYAHQPDFG 75

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +D LG+KP +S ++V +AY K +              S   F  +  A   L   +   
Sbjct: 29 SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG--SEDAFKAVVNARTALLKNIKSG 86

Query: 95 NYD 97
             
Sbjct: 87 PSS 89

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 23  GLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN----SGEEIPSTAD-- 76
           GL     +L +S    +Y  LG+K  +  +++ +AY K + +W+      EE    A+  
Sbjct: 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKK 427

Query: 77  FLKIQYAYELLTDPLWKRNYD 97
           F+ I  A E+L+DP  ++ +D
Sbjct: 428 FIDIAAAKEVLSDPEMRKKFD 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	658
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	100.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.98
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.95
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.93
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.91
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.86
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.81
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.77
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.76
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.76
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.76
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.74
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.73
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.7
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.7
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.7
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.69
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.69
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.69
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.68
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.67
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.67
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.66
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.66
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.66
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.66
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.65
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.65
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.64
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.64
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.64
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.64
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.63
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.63
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.63
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.63
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.62
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.62
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.62
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.61
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.61
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.61
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.61
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.61
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.6
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.6
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.6
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.59
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.59
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.59
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.59
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.59
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.59
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.59
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.59
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.58
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.58
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.58
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.58
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.58
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.58
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.57
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.57
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.57
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.57
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.57
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.56
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.56
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.56
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.55
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.55
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.55
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.55
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.55
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.54
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.54
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.54
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.54
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.54
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.53
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.53
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.52
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.52
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.52
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.51
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.51
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.51
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.51
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.5
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.25
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.49
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.49
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.49
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.49
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.49
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.48
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.48
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.48
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.48
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.48
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.47
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.47
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.47
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.45
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.45
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.45
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.45
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.44
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.43
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.43
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.43
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.43
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.43
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.42
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.42
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.41
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.41
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.4
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.4
2guz_A	71	Mitochondrial import inner membrane translocase su	99.39
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.39
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.38
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.38
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.37
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.36
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.35
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.35
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.35
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.33
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.32
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.31
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.31
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.3
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.29
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.29
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.28
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.27
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.26
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.26
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.25
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.21
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.21
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.84
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.2
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.11
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.11
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.09
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.08
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.06
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.05
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.03
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.99
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.97
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.95
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.95
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.94
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.89
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.89
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.89
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.82
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.79
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.79
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.78
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.78
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.76
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.76
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.74
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.73
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.72
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.71
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.69
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.66
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.63
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.62
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.61
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.61
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.6
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.59
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.59
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.58
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.58
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.56
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.56
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.55
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.54
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.51
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.5
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.46
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.46
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.45
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.42
2guz_B	65	Mitochondrial import inner membrane translocase su	98.42
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.41
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.4
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.4
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.69
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.34
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.33
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.33
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.33
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.31
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.31
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.26
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.24
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.22
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.2
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.19
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.18
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.17
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.17
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.44
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.14
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.11
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.11
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.09
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.07
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.07
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.03
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.03
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.02
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.01
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	97.96
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.88
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.88
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	97.88
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.84
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.81
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	97.8
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.79
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.78
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.77
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.76
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.76
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	97.74
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.74
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.72
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.69
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	97.68
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	97.66
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.62
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.62
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.61
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.6
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	97.56
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	97.56
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.52
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.52
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.51
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.49
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.49
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.47
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.43
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.4
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.38
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.34
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.33
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.32
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	97.27
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.26
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.24
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.22
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.21
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.2
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.2
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.2
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.2
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.19
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.16
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.12
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.11
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	97.11
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.1
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	97.09
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.08
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.04
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	97.04
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.04
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.03
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.02
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.02
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.0
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	96.99
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.99
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	96.97
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	96.97
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	96.97
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.96
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.92
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.91
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.9
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.89
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.89
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.88
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.87
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.86
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	96.85
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	96.83
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.82
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.82
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.8
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	96.8
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	96.76
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.76
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.76
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.75
2l57_A	126	Uncharacterized protein; structural genomics, unkn	96.75
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	96.73
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.72
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	96.72
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	96.71
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.69
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.69
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.65
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	96.65
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.63
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	96.61
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.6
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.6
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.59
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.57
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.55
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.51
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	96.49
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.48
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.48
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.45
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.45
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	96.42
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	96.42
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	96.36
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	96.34
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	96.34
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.33
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.33
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	96.32
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.3
3me7_A	170	Putative uncharacterized protein; electron transfe	96.29
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.29
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.28
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	96.23
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	96.15
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.14
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	96.14
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	96.1
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	96.09
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	96.06
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.06
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.02
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	95.97
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	95.96
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	95.95
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	95.93
2kuc_A	130	Putative disulphide-isomerase; structural genomics	95.91
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	95.89
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	95.88
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	95.85
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	95.84
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	95.83
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	95.82
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	95.8
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	95.77
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	95.76
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	95.72
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	95.69
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	95.68
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	95.65
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	95.64
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	95.61
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	95.58
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.52
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	95.52
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	94.48
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	95.45
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	95.45
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	95.42
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	95.41
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	95.34
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	95.32
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	95.3
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	95.22
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	95.2
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	95.18
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	95.16
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	95.07
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	94.95
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	94.87
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	93.82
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	94.67
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	94.65
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	94.48
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	94.38
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	94.27
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	94.24
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	94.1
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	94.02
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	93.79
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.74
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	93.41
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	93.38
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	93.28
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	93.19
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	93.08
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	92.89
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	92.79
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	92.54
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	91.96
3raz_A	151	Thioredoxin-related protein; structural genomics,	91.78
4evm_A	138	Thioredoxin family protein; structural genomics, n	91.76
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	91.2
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	91.14
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	91.12
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	90.99
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	90.3
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	90.07
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	89.82
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	89.5
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	88.73
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	88.6
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	88.45
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	88.15
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	87.2
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	86.65
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	86.02
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	86.01
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	85.16
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	84.87
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	84.79
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	84.56
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	84.43
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	84.28
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	83.77
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	83.67
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	83.48
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	82.76
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	81.87
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	81.71
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	80.77
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	80.71
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	80.59
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	80.58
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	80.31

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=1.3e-45  Score=435.23  Aligned_cols=407  Identities=19%  Similarity=0.304  Sum_probs=274.4

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhhhhhhhhhc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVR  112 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~~~~~~~~  112 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||++|..+.....   +
T Consensus        20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~~---~   96 (780)
T 3apo_A           20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ---G   96 (780)
T ss_dssp             ---CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------------
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccCC---C
Confidence            679999999999999999999999999999999985   3567899999999999999999999999988765432   4


Q ss_pred             cccCccccccccCCCCCCCCCCcceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeee
Q 006171          113 EQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE  192 (658)
Q Consensus       113 ~~~~~~~f~~~~fgf~~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vd  192 (658)
                      +++..++|++..||+|.++    +.|+.||.++|++.++++++|+|+||||||+||++++|.|+++|+.+++.+.+++||
T Consensus        97 ~~~~~~~~~~~~fg~~~~~----~~v~~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd  172 (780)
T 3apo_A           97 GQYESWSYYRYDFGIYDDD----PEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN  172 (780)
T ss_dssp             -------CCSSSSSTTTTC----TTEEECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEE
T ss_pred             CCcccccccchhhcccCCC----cceeeechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEe
Confidence            5577788888788888765    368999999999999889999999999999999999999999999999889999999


Q ss_pred             cccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccc---hhhh
Q 006171          193 LGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKE---SMGK  269 (658)
Q Consensus       193 c~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~---~~~~  269 (658)
                      |++++   .||++++      |+++||+++|++|..    ...|.|.++.++|++|+.+.+  .|.+..+++.   +.++
T Consensus       173 ~~~~~---~l~~~~~------v~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~~--~~~~~~i~~~~~~~~l~  237 (780)
T 3apo_A          173 CGDDR---MLCRMKG------VNSYPSLFIFRSGMA----AVKYNGDRSKESLVAFAMQHV--RSTVTELSTGNFVNAIE  237 (780)
T ss_dssp             TTTCS---SCC--------------CEEEEECTTSC----CEECCSCSCHHHHHHHHHTTS--CCCEEECCHHHHHHHHH
T ss_pred             CCCcH---HHHHHcC------CceeeeEEEEeCCcE----eeEecCCCCHHHHHHHHHHhc--hhhheeccchhhHHHHH
Confidence            99654   4999998      899999999999864    478999999999999999982  2333335544   3356


Q ss_pred             hhhhhcCCCcEEEEEEeCCCC-CCc-HHHHHHHHhhccCceEEEEEe---------------------------------
Q 006171          270 NFLAKTGPHKVKVIFFSKTGE-RAS-PFVRQISRNYWAYASFAFVLW---------------------------------  314 (658)
Q Consensus       270 ~Fl~~~~~~~v~vl~f~~~~~-~~~-~~~~~~A~~~~~~~~f~~v~~---------------------------------  314 (658)
                      .|+..   +.+.|++|.++.+ ++. ..++.++..|++.+.|+++..                                 
T Consensus       238 ~~~~~---~~~~vi~f~~~~~~~~~~~~~~~l~~~f~~~~~f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~  314 (780)
T 3apo_A          238 TAFAA---GVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSS  314 (780)
T ss_dssp             HHHHH---TCEEEEEEECTTSCCCCHHHHHHHHHHTTTTEEEEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGG
T ss_pred             hhhcc---CCCEEEEEecCcccccCHHHHHHHHHHhhccceEEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccc
Confidence            66643   4566777765332 333 344556655655554544411                                 


Q ss_pred             -------------------------------------------------------------------------ccc-ccH
Q 006171          315 -------------------------------------------------------------------------REE-ESS  320 (658)
Q Consensus       315 -------------------------------------------------------------------------~~~-~s~  320 (658)
                                                                                               .+| ...
T Consensus       315 ~~y~g~~~~~~i~~~i~~~~p~v~~it~~~f~~~~~~~~~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~  394 (780)
T 3apo_A          315 VLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAP  394 (780)
T ss_dssp             SEEECCCCHHHHHHHHHHHSCCCCEECHHHHHHHHTTSEEEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCH
T ss_pred             eeccccccHHHHHHHHHHhCCCcccCCHHHHHHHhccCCeEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCch
Confidence                                                                                     112 135


Q ss_pred             hHHhhcCCCCCCEEEEEeCCC-CCeeeecCCCChHHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEE
Q 006171          321 IWWNTFEVESAPAIVFLKDPG-VKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCV  399 (658)
Q Consensus       321 ~l~~~f~V~~~Ptlvlfk~~~-~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcV  399 (658)
                      .++++|+++. |++++|+..+ +.+..|.|..+.+.|.+|+..+..+.+.+++..+..+.   .      ++    ..+|
T Consensus       395 ~~~~~~~~~~-p~i~l~~~~~~e~~~~~~g~~~~~~i~~f~~~~~~~~v~~l~~~~~~~~---~------~~----~vlv  460 (780)
T 3apo_A          395 GICSDLYVFQ-PSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPAS---D------KE----PWLV  460 (780)
T ss_dssp             HHHHHTTCCS-CEEEEEESSTTSSEEECCSCCCHHHHHHHHHHHHTSCEEECCTTTSCTT---C------CS----CEEE
T ss_pred             hhHhhccccC-ChhhhccCCCcceeeecccHhhHHHHHHHhhhccCCCCEecCHHHHHHc---C------CC----eEEE
Confidence            5888899875 9999999876 45777999999999999999999999999998886542   1      22    2333


Q ss_pred             EEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccccCC
Q 006171          400 ILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGA  479 (658)
Q Consensus       400 i~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~  479 (658)
                      .+...--.....+...++++++                      .+++ ++.|++||.+...+.++.|-           
T Consensus       461 ~F~a~wC~~c~~~~p~~~~~a~----------------------~~~~-~v~~~~vd~~~~~~~~~~~~-----------  506 (780)
T 3apo_A          461 DFFAPWSPPSRALLPELRKAST----------------------LLYG-QLKVGTLDCTIHEGLCNMYN-----------  506 (780)
T ss_dssp             EEECTTCHHHHHHHHHHHHHHH----------------------HTTT-TCEEEEEETTTCHHHHHHTT-----------
T ss_pred             EEECCCCHHHHHHhHHHHHHHH----------------------HhcC-CeEEEEEeCCCCHHHHHHcC-----------
Confidence            3333333455666777777776                      5654 49999999998888888772           


Q ss_pred             cCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          480 RRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       480 ~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                         +...|.++++    +...   ++                        .|.|..+.++|.+||.+++.
T Consensus       507 ---v~~~Pt~~~~----~~g~---~~------------------------~~~g~~~~~~l~~fi~~~~~  542 (780)
T 3apo_A          507 ---IQAYPTTVVF----NQSS---IH------------------------EYEGHHSAEQILEFIEDLRN  542 (780)
T ss_dssp             ---CCSSSEEEEE----ETTE---EE------------------------EECSCSCHHHHHHHHHHHHS
T ss_pred             ---CCcCCeEEEE----cCCc---ee------------------------eecCcccHHHHHHHHHhhcc
Confidence               2235999987    2222   11                        13445566899999999997

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=8e-36  Score=322.13  Aligned_cols=320  Identities=13%  Similarity=0.217  Sum_probs=242.1

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCC---CCCh---HHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCC
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC---GQFS---GAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIG  209 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C---k~l~---P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~  209 (658)
                      .|+.||.+||++.|.++++|||+||||||+||   ++++   |+|+++|+.+++. +.+++|||+++   ..||++++  
T Consensus        14 ~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~---~~l~~~~~--   88 (367)
T 3us3_A           14 RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD---AAVAKKLG--   88 (367)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTT---HHHHHHHT--
T ss_pred             ccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCccc---HHHHHHcC--
Confidence            57999999999999889999999999999996   3333   7999999999875 69999999954   45999999  


Q ss_pred             cccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCC
Q 006171          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTG  289 (658)
Q Consensus       210 k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~  289 (658)
                          |++||||++|++|..     ..|.|.|++++|++|+.+++  .|.+..+++.+.++.|+... ...++|.||.+.+
T Consensus        89 ----V~~~PTl~~f~~G~~-----~~y~G~~~~~~i~~~i~~~~--~~~v~~i~~~~~~~~~~~~~-~~~~vv~ff~~~~  156 (367)
T 3us3_A           89 ----LTEEDSIYVFKEDEV-----IEYDGEFSADTLVEFLLDVL--EDPVELIEGERELQAFENIE-DEIKLIGYFKNKD  156 (367)
T ss_dssp             ----CCSTTEEEEEETTEE-----EECCSCCSHHHHHHHHHHHH--SCSEEECCSHHHHHHHHHCC-SSCEEEEECSCTT
T ss_pred             ----CCcCceEEEEECCcE-----EEeCCCCCHHHHHHHHHHhc--CCCcEEcCCHHHHHHHhccC-CCcEEEEEECCCC
Confidence                889999999998853     68999999999999999983  45555566544478887621 2335555666543


Q ss_pred             CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC-CChHHHHHHHHhhccCCC
Q 006171          290 ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQEL  368 (658)
Q Consensus       290 ~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~-~~~~~L~~fi~~~~~~~v  368 (658)
                      ....+.+..+|..+++.+.|+.+.     +..++++|+|+ .|+|++|++++..++.|.|. ++.+.|.+||+.+.+|++
T Consensus       157 ~~~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~v~-~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v  230 (367)
T 3us3_A          157 SEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTL  230 (367)
T ss_dssp             CHHHHHHHHHHHHHTTTSCEEEEC-----CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSE
T ss_pred             chHHHHHHHHHHhhcCCcEEEEEC-----CHHHHHHcCCC-CCeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccce
Confidence            333456778999998889999874     45699999998 49999999987888899995 899999999999999999


Q ss_pred             ccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCC
Q 006171          369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN  447 (658)
Q Consensus       369 P~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  447 (658)
                      ++++..+..+..+..     ..     ..+++++.+ ..++.+++.+.++.+|+                      .|++
T Consensus       231 ~elt~~~~~~~~~~~-----~~-----~~~~~~f~~~~~~~~~~~~~~l~~vA~----------------------~~~~  278 (367)
T 3us3_A          231 RKLKPESMYETWEDD-----MD-----GIHIVAFAEEADPDGYEFLEILKSVAQ----------------------DNTD  278 (367)
T ss_dssp             EECCGGGHHHHHHSC-----BT-----TEEEEEECCTTSHHHHHHHHHHHHHHH----------------------HTTT
T ss_pred             eecChhhHHHHHhhc-----cC-----CcEEEEEEcCCChhHHHHHHHHHHHHH----------------------HcCC
Confidence            999999977644421     01     133444555 44556777788888777                      7776


Q ss_pred             C-cEEEEEEeccchHHHHHH----HcccCCcccccCCcCCCCCCCeEEEEEeecCCccc-cceeccccCccccccccccc
Q 006171          448 K-RLTFAWLDGEAQDRYCSF----YLFSETSFETCGARRDMSDVPRLFIVRYKRNTTED-EAKIERKPRNIWDAMQEQEV  521 (658)
Q Consensus       448 ~-~v~F~wvd~~~q~~~~~~----f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~-~~k~~~~~w~~~~~~~~~~~  521 (658)
                      + ++.|+|+|+..++..++.    |-..             .+.|.++|+    |.+.. ..+|.      +   ++.  
T Consensus       279 ~~ki~F~~id~~~~~~~l~~~~~~fgl~-------------~~~P~~~i~----~~~~~~~~~y~------~---~~~--  330 (367)
T 3us3_A          279 NPDLSIIWIDPDDFPLLVPYWEKTFDID-------------LSAPQIGVV----NVTDADSVWME------M---DDE--  330 (367)
T ss_dssp             CTTCCEEEECGGGCTTTHHHHHHHHTCC-------------TTSCEEEEE----ETTTCCEEECC------C---CTT--
T ss_pred             CCceEEEEECCccchhHHHHHHHhcCCC-------------CCCCeEEEE----ecccccceeec------C---Ccc--
Confidence            5 699999999887765543    5111             145999999    65431 12332      2   220  


Q ss_pred             CccccchhccCCCCChhHHHHHHHHHhh
Q 006171          522 DPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                                ++.-+.++|.+||.+++.
T Consensus       331 ----------~~~~t~~~i~~F~~~~~~  348 (367)
T 3us3_A          331 ----------EDLPSAEELEDWLEDVLE  348 (367)
T ss_dssp             ----------SCCCCHHHHHHHHHHHHH
T ss_pred             ----------cccCCHHHHHHHHHHHHc
Confidence                      012266899999999998

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=100.00  E-value=2e-37  Score=308.50  Aligned_cols=197  Identities=26%  Similarity=0.497  Sum_probs=171.5

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhhhhhhhhhcc
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVRE  113 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~~~~~~~~~  113 (658)
                      .|||+||||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||++|..+....   .++
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~---~~~   78 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN---QGG   78 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT---CSC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc---ccc
Confidence            48999999999999999999999999999999985   366789999999999999999999999998775432   244


Q ss_pred             ccCccccccccCCCCCCCCCCcceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeec
Q 006171          114 QYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (658)
Q Consensus       114 ~~~~~~f~~~~fgf~~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc  193 (658)
                      ++..+.|+...|++|..+    ..|..|+.++|+..+.++++++|.|||+||++|+.+.|.|+++++.+++.+.++.|||
T Consensus        79 ~~~~~~~~~~~fg~~~~~----~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~  154 (210)
T 3apq_A           79 QYESWSYYRYDFGIYDDD----PEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNC  154 (210)
T ss_dssp             CCCCHHHHHHSSSTTTTC----TTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEET
T ss_pred             cccccccccccccccCCC----CceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEEC
Confidence            455566666667777654    2468899999999998889999999999999999999999999999988889999999


Q ss_pred             ccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          194 GDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       194 ~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      ++++   .+|++++      |.++||+++|++|..    ...|.|.++.+.|.+|+.+.+
T Consensus       155 ~~~~---~l~~~~~------v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~l  201 (210)
T 3apq_A          155 GDDR---MLCRMKG------VNSYPSLFIFRSGMA----AVKYNGDRSKESLVAFAMQHV  201 (210)
T ss_dssp             TTCH---HHHHHTT------CCSSSEEEEECTTSC----CEECCSCCCHHHHHHHHHHHH
T ss_pred             CccH---HHHHHcC------CCcCCeEEEEECCCc----eeEecCCCCHHHHHHHHHHhC
Confidence            9554   5999999      889999999988754    577899999999999999873

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=100.00  E-value=2.2e-34  Score=308.52  Aligned_cols=319  Identities=13%  Similarity=0.188  Sum_probs=244.2

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHH-------HHHHHHHhhcc-cceeeeecccchhhhHHHhhCCC
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGA-------WKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI  208 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~-------w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i  208 (658)
                      .|+.||.+||++.+.++++|||+||||||+ |++++|.       |+++|+.+++. +.+++|||+++   ..+|++++ 
T Consensus        12 ~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~---~~l~~~~~-   86 (350)
T 1sji_A           12 RVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKE---AKLAKKLG-   86 (350)
T ss_dssp             CCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTT---HHHHHHHT-
T ss_pred             ccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCC---HHHHHhcC-
Confidence            578999999999998889999999999999 9999999       99999999885 79999999955   45999999 


Q ss_pred             CcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhh-hcCCCcEEEEEEeC
Q 006171          209 GQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLA-KTGPHKVKVIFFSK  287 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~-~~~~~~v~vl~f~~  287 (658)
                           |++|||+++|++|.     ...|.|.|+.++|++|+.+.+  .|.+..+++.+.++.|+. ..  ..+.|.||.+
T Consensus        87 -----v~~~Pt~~~~~~g~-----~~~~~G~~~~~~l~~~i~~~~--~~~~~~l~~~~~~~~~~~~~~--~~~vv~ff~~  152 (350)
T 1sji_A           87 -----FDEEGSLYVLKGDR-----TIEFDGEFAADVLVEFLLDLI--EDPVEIINSKLEVQAFERIED--QIKLIGFFKS  152 (350)
T ss_dssp             -----CCSTTEEEEEETTE-----EEEECSCCCHHHHHHHHHTTS--SCSEEECCSHHHHHHHHHCCS--SCEEEEECSC
T ss_pred             -----CCccceEEEEECCc-----EEEecCCCCHHHHHHHHHHhc--CCcceeccchHHHHHHhccCC--CcEEEEEECC
Confidence                 88999999998885     368999999999999999883  344555655444788875 33  2354556665


Q ss_pred             CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC-CChHHHHHHHHhhccC
Q 006171          288 TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       288 ~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~-~~~~~L~~fi~~~~~~  366 (658)
                      .+....+.+..+|..+++.+.|+.+.     .+.++++|+++ +|+|++|++++..++.|.|. ++.++|.+|++.+.+|
T Consensus       153 ~~~~~~~~~~~~A~~~~~~~~f~~~~-----~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p  226 (350)
T 1sji_A          153 EESEYYKAFEEAAEHFQPYIKFFATF-----DKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRP  226 (350)
T ss_dssp             TTSHHHHHHHHHHHHTTTTSEEEEEC-----CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCC
T ss_pred             CCcHHHHHHHHHHHhhccCcEEEEEC-----CHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCcc
Confidence            33333466777899998899998873     45699999999 99999999887788889997 8999999999999999


Q ss_pred             CCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCC-ChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhc
Q 006171          367 ELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAF  445 (658)
Q Consensus       367 ~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~-~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~  445 (658)
                      ++++++..+..+ +|...    ..     .+|++++... ..+..+.++.++++|+                      ++
T Consensus       227 ~v~elt~~~~~~-~~~~~----~~-----~~~~l~f~~~~~~~~~~~~~~~~~vA~----------------------~~  274 (350)
T 1sji_A          227 TLRRLRPEDMFE-TWEDD----LN-----GIHIVAFAERSDPDGYEFLEILKQVAR----------------------DN  274 (350)
T ss_dssp             SEEECCTTTHHH-HHHSC----SS-----SEEEEEECCTTSHHHHHHHHHHHHHHH----------------------HG
T ss_pred             chhhcChhhHHH-HhcCC----CC-----CcEEEEEEcCCCccHHHHHHHHHHHHH----------------------Hh
Confidence            999999999865 56320    01     2677777653 3345677788888777                      56


Q ss_pred             C-CCcEEEEEEeccchHHHH----HHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccc
Q 006171          446 R-NKRLTFAWLDGEAQDRYC----SFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQE  520 (658)
Q Consensus       446 ~-~~~v~F~wvd~~~q~~~~----~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~  520 (658)
                      + +.++.|+|+|++.++.++    +.|-.            + .+.|.|+|+    |.+.. .+|..  -  +   ++  
T Consensus       275 ~~~~~~~f~~id~~~~~~~~~~~~~~~gi------------~-~~~P~~~i~----~~~~~-~~~~~--~--~---~~--  327 (350)
T 1sji_A          275 TDNPDLSIVWIDPDDFPLLVAYWEKTFKI------------D-LFKPQIGVV----NVTDA-DSVWM--E--I---PD--  327 (350)
T ss_dssp             GGCSSCCEEEECGGGCHHHHHHHHHHCCS------------C-TTSCEEEEE----ESSSS-CEEES--C--S---SC--
T ss_pred             CCCCceEEEEECchhhHHHHHHHHhhcCC------------C-ccCCcEEEE----ecccc-ccccc--C--C---Cc--
Confidence            5 356999999999888877    45511            1 135999998    55331 12210  0  1   11  


Q ss_pred             cCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          521 VDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                                .++..+.++|.+||++++.
T Consensus       328 ----------~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          328 ----------DDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             ----------CSCCCCHHHHHHHHHHHHT
T ss_pred             ----------ccccCCHHHHHHHHHHHhc
Confidence                      0123466899999999998

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=308.86  Aligned_cols=333  Identities=12%  Similarity=0.145  Sum_probs=218.5

Q ss_pred             cceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh------cccceeeeecccchhhhHHHhhCCC
Q 006171          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE------GIANTGMVELGDIRLATHLAERKPI  208 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~------g~~~vg~Vdc~e~~~~~~Lc~k~~i  208 (658)
                      .+.|+.||.++|++.+.++++|||+||||||+||++++|+|+++|+.++      +.+.+++|||+++   ..||++++ 
T Consensus         4 ~~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~---~~l~~~~~-   79 (382)
T 2r2j_A            4 GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH---SDIAQRYR-   79 (382)
T ss_dssp             ----CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC---HHHHHHTT-
T ss_pred             CCceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc---HHHHHhcC-
Confidence            4568899999999988888999999999999999999999999999994      4468999999955   45999999 


Q ss_pred             CcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCC
Q 006171          209 GQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT  288 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~  288 (658)
                           |++|||+++|++|..   ....|.|.++.++|++|+.+.+  .|.+..+++.+.++. +..  ...++|.||.+.
T Consensus        80 -----v~~~Pt~~~f~~G~~---~~~~~~G~~~~~~l~~~i~~~~--~~~v~~l~~~~~l~~-l~~--~~~~~v~ff~~~  146 (382)
T 2r2j_A           80 -----ISKYPTLKLFRNGMM---MKREYRGQRSVKALADYIRQQK--SDPIQEIRDLAEITT-LDR--SKRNIIGYFEQK  146 (382)
T ss_dssp             -----CCEESEEEEEETTEE---EEEECCSCCSHHHHHHHHHHHH--SCCCEEC---------------CCEEEEEESCS
T ss_pred             -----CCcCCEEEEEeCCcE---eeeeecCcchHHHHHHHHHHhc--cCCceecCCHHHHHH-hcC--CCCEEEEEECCC
Confidence                 889999999998854   1236999999999999999984  344444544332444 322  234556666543


Q ss_pred             CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC--CCCeeeecCCC-ChHHHHHHHHhhcc
Q 006171          289 GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP--GVKPVVYYGSF-NNSRLSEVMEQNKL  365 (658)
Q Consensus       289 ~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~--~~~p~~y~g~~-~~~~L~~fi~~~~~  365 (658)
                      .......+..+|..+++.+.|+.+..      ++.+++++++.| + +|+++  ...+..|.|.+ +.+.|.+||+.+.+
T Consensus       147 ~~~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~v~~~p-i-~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  218 (382)
T 2r2j_A          147 DSDNYRVFERVANILHDDCAFLSAFG------DVSKPERYSGDN-I-IYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV  218 (382)
T ss_dssp             SSHHHHHHHHHHHHHTTTCEEEEEES------CC--------CE-E-EEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS
T ss_pred             CChhHHHHHHHHHHhhccceEEEEeh------hhHHhhCCCCCc-e-EECCCCCCCcCcccCCCCCCHHHHHHHHHhccc
Confidence            21112356778899988888887752      367788998888 5 45544  23567899998 89999999999999


Q ss_pred             CCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCCC-hhHHHHHHHHHHHHHhhccccccccccccCCchHHHHh
Q 006171          366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLS-PELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVA  444 (658)
Q Consensus       366 ~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~-~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~  444 (658)
                      |++++++..+..+..|..       +    .+|++++.... ...+.+++.+.+++.                      .
T Consensus       219 p~v~elt~~~~~~~~~~~-------~----~~~v~f~~~~~~~~~~~~~~~~~~~~~----------------------~  265 (382)
T 2r2j_A          219 PLVREITFENGEELTEEG-------L----PFLILFHMKEDTESLEIFQNEVARQLI----------------------S  265 (382)
T ss_dssp             CSSEECCHHHHHHHHTTC-------C----CEEEEEECTTCCHHHHHHHHHHHHHTG----------------------G
T ss_pred             CceEecChhhHHHHhcCC-------C----cEEEEEecCCchHHHHHHHHHHHHHHH----------------------H
Confidence            999999999987755532       2    47777665432 222333333332222                      4


Q ss_pred             cCCCcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCcc
Q 006171          445 FRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPA  524 (658)
Q Consensus       445 ~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~  524 (658)
                      +++ ++.|+|+|++.+..+++.|..+.            .+.|.|+|+    |.... +++..     +   ++      
T Consensus       266 ~~~-~i~f~~id~~~~~~~~~~~gl~~------------~~~P~i~i~----~~~~~-y~~~~-----~---~~------  313 (382)
T 2r2j_A          266 EKG-TINFLHADCDKFRHPLLHIQKTP------------ADCPVIAID----SFRHM-YVFGD-----F---KD------  313 (382)
T ss_dssp             GTT-TSEEEEEETTTTHHHHHHTTCCG------------GGCSEEEEE----CSSCE-EECCC-----S---GG------
T ss_pred             hCC-eeEEEEEchHHhHHHHHHcCCCc------------cCCCEEEEE----cchhc-CCCCc-----c---cc------
Confidence            554 69999999999999998883321            145999887    54331 22220     1   11      


Q ss_pred             ccchhccCCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCCCC
Q 006171          525 SQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVP  568 (658)
Q Consensus       525 ~~~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l~~  568 (658)
                               ..+.+.|.+||.+++.  +.....++++++|+-.+
T Consensus       314 ---------~~~~~~i~~F~~d~~~--Gkl~p~~kse~~P~~~~  346 (382)
T 2r2j_A          314 ---------VLIPGKLKQFVFDLHS--GKLHREFHHGPDPTDTA  346 (382)
T ss_dssp             ---------GGSTTHHHHHHHHHHH--TTTSSCC----------
T ss_pred             ---------ccCHHHHHHHHHHHHC--CCccccccCCCCCCCCC
Confidence                     1133789999999999  66677779999999875

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=1.2e-32  Score=307.05  Aligned_cols=331  Identities=15%  Similarity=0.178  Sum_probs=247.4

Q ss_pred             eEEEecCCCCCccccCC---CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~---~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|+.||.++|++.+.++   ++|+|+||||||+||+++.|.|+++|+.+++.+.+++|||+++   ..||++++      
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~---~~l~~~~~------   72 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTAN---TNTCNKYG------   72 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTC---HHHHHHTT------
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCC---HHHHHhcC------
Confidence            47899999999999666   9999999999999999999999999999998899999999954   45999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCCCc
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS  293 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~  293 (658)
                      |++||||++|++|..    ...|.|.++.+.|++|+.+.+  .|....+++.+.++.|++..  ..+.|.||.+.+....
T Consensus        73 v~~~Ptl~~~~~g~~----~~~~~G~~~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~  144 (481)
T 3f8u_A           73 VSGYPTLKIFRDGEE----AGAYDGPRTADGIVSHLKKQA--GPASVPLRTEEEFKKFISDK--DASIVGFFDDSFSEAH  144 (481)
T ss_dssp             CCEESEEEEEETTEE----EEECCSCSSHHHHHHHHHHHT--SCSEEEECSHHHHHHHTTSS--SCEEEEEESCTTCHHH
T ss_pred             CCCCCEEEEEeCCce----eeeecCccCHHHHHHHHHhhc--ccCceecCCHHHHHHHHhcC--CcEEEEEECCCccchH
Confidence            889999999998853    578999999999999999982  34444465545577887643  2343446655443345


Q ss_pred             HHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEe------CCCCCeeeec-CCCChHHHHHHHHhhccC
Q 006171          294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK------DPGVKPVVYY-GSFNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       294 ~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk------~~~~~p~~y~-g~~~~~~L~~fi~~~~~~  366 (658)
                      ..+..+|..+++.+.|+.+.     +..++++|+++..| |++|+      ..+..++.|. |.++.+.|.+||+.+++|
T Consensus       145 ~~f~~~a~~~~~~~~F~~~~-----~~~~~~~~~v~~~~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p  218 (481)
T 3f8u_A          145 SEFLKAASNLRDNYRFAHTN-----VESLVNEYDDNGEG-IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFG  218 (481)
T ss_dssp             HHHHHHHHHHTTTSCEEEEC-----CHHHHHHHCSSSEE-EEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhccCceEEEEC-----CHHHHHHhCCCCCc-EEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCC
Confidence            56677899998999999873     45699999998644 88888      4556778898 888999999999999999


Q ss_pred             CCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCCCh----hHHHHHHHHHHHHHhhccccccccccccCCchHHH
Q 006171          367 ELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSP----ELNKMRETIRRVQETLLSDDESNAADTDQSLAPAA  442 (658)
Q Consensus       367 ~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~~----~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A  442 (658)
                      ++++++..+..+ ++.       .     .++++++.....    ..+.+++.++.+|+                     
T Consensus       219 ~v~e~t~~n~~~-~~~-------~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~---------------------  264 (481)
T 3f8u_A          219 ICPHMTEDNKDL-IQG-------K-----DLLIAYYDVDYEKNAKGSNYWRNRVMMVAK---------------------  264 (481)
T ss_dssp             TSCEECTTTHHH-HTT-------S-----SEEEEEECCCTTTCHHHHHHHHHHHHHHHH---------------------
T ss_pred             CccccChhHHHH-hcC-------C-----CceEEEEecccccchhhHHHHHHHHHHHHH---------------------
Confidence            999999999765 331       1     255555433211    12335677777777                     


Q ss_pred             HhcCC--CcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccc
Q 006171          443 VAFRN--KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQE  520 (658)
Q Consensus       443 ~~~~~--~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~  520 (658)
                       .+++  .++.|+|+|++.....++.|-...          ...+.|.|+|+    +...  .+|.      +   ++  
T Consensus       265 -~~~~k~~~i~F~~~D~~~~~~~l~~~gl~~----------~~~~~P~~~i~----~~~~--~ky~------~---~~--  316 (481)
T 3f8u_A          265 -KFLDAGHKLNFAVASRKTFSHELSDFGLES----------TAGEIPVVAIR----TAKG--EKFV------M---QE--  316 (481)
T ss_dssp             -HHHHTTCCCEEEEEETTTTHHHHGGGTCCC----------CTTCSCEEEEE----CSSS--CEEE------C---CS--
T ss_pred             -HhcCCCceEEEEEEcHHHHHHHHHHcCCCc----------ccCCCcEEEEE----cCCC--cccC------C---Cc--
Confidence             4433  349999999988888887772221          12356999998    5433  3444      2   21  


Q ss_pred             cCccccchhccCCCCChh--HHHHHHHHHhhcCCCCCCCcccCCCCCCC
Q 006171          521 VDPASQLVVRYNGSDEIP--QIAKWVSEIIQDGDSKDLPFYRAKTPELV  567 (658)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~--~i~~~i~~~~~~g~~~~l~~~~~~~p~l~  567 (658)
                                   .-+.+  .|++||.+++.  +.....+.++.+|+-.
T Consensus       317 -------------~~t~e~~~l~~f~~~~~~--g~~~~~~~s~~~p~~~  350 (481)
T 3f8u_A          317 -------------EFSRDGKALERFLQDYFD--GNLKRYLKSEPIPESN  350 (481)
T ss_dssp             -------------CCCTTSHHHHHHHHHHHH--TCCCCCCCCCCCCSCC
T ss_pred             -------------ccCccHHHHHHHHHHHhc--CCcccccccCCCCCCC
Confidence                         11335  99999999998  4555444788888653

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.98  E-value=5.2e-32  Score=303.77  Aligned_cols=334  Identities=14%  Similarity=0.149  Sum_probs=246.2

Q ss_pred             ceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccce
Q 006171          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      +.|+.||.+||++.+.++++|||+||||||+||+++.|.|+++|+.+++. +.+++|||+++   ..||++++      |
T Consensus        14 ~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~---~~l~~~~~------v   84 (504)
T 2b5e_A           14 SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN---QDLCMEHN------I   84 (504)
T ss_dssp             SSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTC---HHHHHHTT------C
T ss_pred             CCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCC---HHHHHhcC------C
Confidence            35899999999999988999999999999999999999999999999986 79999999955   45999999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCCCcH
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASP  294 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~  294 (658)
                      ++|||+++|++|..  .....|.|.++.+.|++|+.+.+  .|.+..+++   ++.|++......++|++|.+.......
T Consensus        85 ~~~Pt~~~~~~g~~--~~~~~~~G~~~~~~l~~~l~~~~--~~~v~~i~~---~~~~~~~~~~~~~~v~~f~~~~~~~~~  157 (504)
T 2b5e_A           85 PGFPSLKIFKNSDV--NNSIDYEGPRTAEAIVQFMIKQS--QPAVAVVAD---LPAYLANETFVTPVIVQSGKIDADFNA  157 (504)
T ss_dssp             CSSSEEEEEETTCT--TCEEECCSCCSHHHHHHHHHHHT--SCSEEECSC---HHHHHHHSCCSSCEEEEEESCCHHHHH
T ss_pred             CcCCEEEEEeCCcc--ccceeecCCCCHHHHHHHHHHhc--CCcceeHHH---HHHHHhcCCCceEEEEEeCCCCchHHH
Confidence            89999999998863  11578999999999999999983  244444554   678887542225667778754333456


Q ss_pred             HHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC-C---ChHHHHHHHHhhccCCCcc
Q 006171          295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-F---NNSRLSEVMEQNKLQELPQ  370 (658)
Q Consensus       295 ~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~-~---~~~~L~~fi~~~~~~~vP~  370 (658)
                      .++.+|..+++.+.|+.+.       +++++++++    +++|++.+ .++.|.|. +   +.+.|.+||..+.+|++++
T Consensus       158 ~f~~~A~~~~~~~~F~~~~-------~~~~~~~~~----i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~  225 (504)
T 2b5e_A          158 TFYSMANKHFNDYDFVSAE-------NADDDFKLS----IYLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALPYFGE  225 (504)
T ss_dssp             HHHHHHHHTTTTCEEEEEE-------CTTSCCEEE----EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSCSSCB
T ss_pred             HHHHHHHHhhcCcEEEEEH-------HHHHhcCCe----EEecCCCC-cccccCCcccccCCHHHHHHHHHhcccCCccc
Confidence            6778999999999998875       366778875    88888765 77889998 6   8899999999999999999


Q ss_pred             ccCcchhhhcccccCCcCCCCCCcccEEEEEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcE
Q 006171          371 LRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRL  450 (658)
Q Consensus       371 lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v  450 (658)
                      ++..+..+ +|..      +.    .+ ++++.......+.+++.++++++                      .+++ ++
T Consensus       226 ~t~~~~~~-~~~~------~~----~~-~~l~~~~~~~~~~~~~~l~~~a~----------------------~~~~-~i  270 (504)
T 2b5e_A          226 IDGSVFAQ-YVES------GL----PL-GYLFYNDEEELEEYKPLFTELAK----------------------KNRG-LM  270 (504)
T ss_dssp             CCHHHHHH-HHHT------TS----CE-EEEEESSHHHHHHHHHHHHHHHH----------------------HTTT-TC
T ss_pred             CCHhHHHH-HhcC------CC----cE-EEEEecCcccHHHHHHHHHHHHH----------------------hcCC-ee
Confidence            99998754 4532      11    23 33343433344667777777777                      6665 49


Q ss_pred             EEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccc-cccCccccchh
Q 006171          451 TFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQE-QEVDPASQLVV  529 (658)
Q Consensus       451 ~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~-~~~~~~~~~~~  529 (658)
                      .|+|+|++.+.++++.|.. .            .+.|.|+|+    |.+.. .+|.   +      +. ++.+     .+
T Consensus       271 ~F~~id~~~~~~~~~~~gl-~------------~~~P~v~i~----~~~~~-~ky~---~------~~~~~~~-----~~  318 (504)
T 2b5e_A          271 NFVSIDARKFGRHAGNLNM-K------------EQFPLFAIH----DMTED-LKYG---L------PQLSEEA-----FD  318 (504)
T ss_dssp             EEEEEEHHHHTTHHHHTTC-C------------SCSSEEEEE----ETTTT-EEEE---C------CCCCHHH-----HH
T ss_pred             EEEEEehhhhHHHHHHcCC-c------------ccCCEEEEE----eCCcC-cccC---C------CCCccch-----hh
Confidence            9999999999999998833 2            145999988    44221 3554   2      21 1000     00


Q ss_pred             ccCCC--CChhHHHHHHHHHhhcCCCCCCCcccCCCCCC
Q 006171          530 RYNGS--DEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL  566 (658)
Q Consensus       530 ~~~~~--~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l  566 (658)
                      .+.++  .+.+.|..|+.+++.  +.....+.++.+|+-
T Consensus       319 ~~~~~~~~~~~~l~~f~~~~~~--g~~~p~~~s~~~p~~  355 (504)
T 2b5e_A          319 ELSDKIVLESKAIESLVKDFLK--GDASPIVKSQEIFEN  355 (504)
T ss_dssp             TCCSCCCCCHHHHHHHHHHHHH--TCCCCCCCCCCCCCC
T ss_pred             ccccccccCHHHHHHHHHHHHc--CCCChhhhcCCCCcc
Confidence            00000  245899999999999  455555566666653

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.5e-27  Score=248.61  Aligned_cols=229  Identities=16%  Similarity=0.248  Sum_probs=183.8

Q ss_pred             cceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      ...|++||.++|++.+ +.+++++|+||||||++|+++.|.|+++|+.+++.+.++.|||+... ...+|++++      
T Consensus        16 ~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~-~~~l~~~~~------   88 (298)
T 3ed3_A           16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK-NKALCAKYD------   88 (298)
T ss_dssp             CTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT-THHHHHHTT------
T ss_pred             CCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCcc-CHHHHHhCC------
Confidence            4468999999999999 67889999999999999999999999999999988899999998432 245999999      


Q ss_pred             eeeeeEEEEcCCCCCC-------------CCCcccccCCCCHhHHHHHHHHhhccCC-cceeeccchhhhhhhhhcCCCc
Q 006171          214 RRGLPSLVAFPPGCKS-------------SDCMTRFEGELSVDAVTDWFATAILKLP-RIFYYTKESMGKNFLAKTGPHK  279 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~-------------~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP-~~~~it~~~~~~~Fl~~~~~~~  279 (658)
                      |.++||+++|.+|...             ......|.|.|++++|++|+.+.   ++ .+..+++.+.++.|+...  +.
T Consensus        89 I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~---~~~~v~~i~~~~~l~~~l~~~--~~  163 (298)
T 3ed3_A           89 VNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR---IRSYVKKFVRIDTLGSLLRKS--PK  163 (298)
T ss_dssp             CCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTT---CCCCEEECSCGGGHHHHHTSC--SS
T ss_pred             CCccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHh---cccccEEcCCHHHHHHHHhcC--Cc
Confidence            8899999999988510             01257899999999999999988   43 333455544478888743  46


Q ss_pred             EEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHH--hhcC-----C-------------CCCCEEEEEeC
Q 006171          280 VKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWW--NTFE-----V-------------ESAPAIVFLKD  339 (658)
Q Consensus       280 v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~--~~f~-----V-------------~~~Ptlvlfk~  339 (658)
                      ++|++|+.++ ...+.++.+|..|++.+.|+.+...+.  ..+.  ++|+     |             ...|+|++|+.
T Consensus       164 ~~vi~fs~~~-~~~~~f~~~A~~~~~~~~F~~v~~~~~--a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~  240 (298)
T 3ed3_A          164 LSVVLFSKQD-KISPVYKSIALDWLGKFDFYSISNKKL--KQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDA  240 (298)
T ss_dssp             EEEEEEESSS-SCCHHHHHHHHHTBTTEEEEEEEGGGC--CCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEET
T ss_pred             eEEEEEcCCC-cchHHHHHHHHHhhcCcEEEEEcchHh--hhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcC
Confidence            8888887554 467889999999999999999873321  1111  2333     2             56999999999


Q ss_pred             CCCCeeeecC-CCChHHHHHHHH--hhccCCCccccCcchhh
Q 006171          340 PGVKPVVYYG-SFNNSRLSEVME--QNKLQELPQLRSVTSME  378 (658)
Q Consensus       340 ~~~~p~~y~g-~~~~~~L~~fi~--~~~~~~vP~lts~~~~~  378 (658)
                      .+.+++.|.| .++.++|.+||.  .+++|.+++|+....+.
T Consensus       241 ~~~~~~~y~g~~~~~~~i~~fi~~~~~~~p~~~~ls~~~~~~  282 (298)
T 3ed3_A          241 DKDKFWEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYI  282 (298)
T ss_dssp             TTTEEEECCCSSCCHHHHHHHHHHHHTCCCSSSTTSHHHHHH
T ss_pred             CCCceEEeccccCCHHHHHHHHHhhcCCCCCcCCCchHHHHH
Confidence            8889999995 689999999999  88999999999977543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.93  E-value=1.5e-24  Score=255.68  Aligned_cols=287  Identities=15%  Similarity=0.166  Sum_probs=220.8

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .|.++|.++|++.  .+++++|.|||+||++|+++.|.|+++|+.+++.+.|+.|||+++.   .+|++++      |++
T Consensus       441 ~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~---~~~~~~~------v~~  509 (780)
T 3apo_A          441 HVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHE---GLCNMYN------IQA  509 (780)
T ss_dssp             CEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             CCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCH---HHHHHcC------CCc
Confidence            4899999999987  7889999999999999999999999999999988899999999554   4999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCc-EEEEEEeCC---CCCC
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHK-VKVIFFSKT---GERA  292 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~-v~vl~f~~~---~~~~  292 (658)
                      +||+++|.+|..     ..|.|.++.++|.+|+.+.+.  |.+..++..+ +++++.....+. +.|.|+.+-   ++..
T Consensus       510 ~Pt~~~~~~g~~-----~~~~g~~~~~~l~~fi~~~~~--~~v~~l~~~~-f~~~v~~~~~~~~~lv~F~ap~C~~c~~~  581 (780)
T 3apo_A          510 YPTTVVFNQSSI-----HEYEGHHSAEQILEFIEDLRN--PSVVSLTPST-FNELVKQRKHDEVWMVDFYSPWSHPSQVL  581 (780)
T ss_dssp             SSEEEEEETTEE-----EEECSCSCHHHHHHHHHHHHS--CSEEECCHHH-HHHHTTTCCTTCCEEEEEECTTCHHHHHH
T ss_pred             CCeEEEEcCCce-----eeecCcccHHHHHHHHHhhcc--cceeecCccc-HHHHhhccCCCCeEEEEEECCCCHHHHHh
Confidence            999999977643     678999999999999998843  5555566544 666665433234 444455432   2234


Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC---CeeeecC-CCChHHHHHHHHhhccCCC
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV---KPVVYYG-SFNNSRLSEVMEQNKLQEL  368 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~---~p~~y~g-~~~~~~L~~fi~~~~~~~v  368 (658)
                      .|.+..+|..|++.+.|+.+...  ....++++|+|+++|+|++|+.+..   .+..|.| .++.+.|.+|+..+..+.+
T Consensus       582 ~p~~~~lA~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~v  659 (780)
T 3apo_A          582 MPEWKRMARTLTGLINVGSVDCG--QYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQAS  659 (780)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEETT--TTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCCS
T ss_pred             hHHHHHHHHHhhCCeEEEEEECc--chHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhccccc
Confidence            67788899999888888887532  2467999999999999999988654   4677999 8899999999999988888


Q ss_pred             ccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCC
Q 006171          369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN  447 (658)
Q Consensus       369 P~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  447 (658)
                      ..++..+..+.++..      ++     .++|.+.. --.....+...+.++++                      .+++
T Consensus       660 ~~l~~~~~~~~~~~~------~~-----~v~v~F~a~wC~~C~~~~p~~~~la~----------------------~~~~  706 (780)
T 3apo_A          660 IDLTPQTFNEKVLQG------KT-----HWVVDFYAPWSGPSQNFAPEFELLAR----------------------MIKG  706 (780)
T ss_dssp             EEECHHHHHHHTTTC------SS-----CEEEEEECTTCHHHHHHHHHHHHHHH----------------------HHTT
T ss_pred             ccCCHHHHHHHHhcC------CC-----eEEEEEECCCCHHHHHHHHHHHHHHH----------------------HhcC
Confidence            888887765545532      23     44555543 23345566667777766                      5544


Q ss_pred             CcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEE
Q 006171          448 KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIV  492 (658)
Q Consensus       448 ~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~  492 (658)
                       ++.|++||.+...++++.|-              +...|.++++
T Consensus       707 -~~~~~~vd~~~~~~~~~~~~--------------v~~~Pt~~~~  736 (780)
T 3apo_A          707 -KVRAGKVDCQAYPQTCQKAG--------------IKAYPSVKLY  736 (780)
T ss_dssp             -TCEEEEEETTTCHHHHHHTT--------------CCSSSEEEEE
T ss_pred             -CceEEEEECCCCHHHHHhcC--------------CCcCCEEEEE
Confidence             59999999999999888762              2245999987

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.91  E-value=5.5e-24  Score=214.15  Aligned_cols=209  Identities=16%  Similarity=0.248  Sum_probs=165.4

Q ss_pred             ceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..||.++|+..+.++++++|.|||+||++|+++.|.|+++++++++.   +.++.|||++++   .+|++++     
T Consensus        15 ~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~-----   86 (241)
T 3idv_A           15 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS---VLASRFD-----   86 (241)
T ss_dssp             TTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH---HHHHHTT-----
T ss_pred             CCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH---HHHHhcC-----
Confidence            35899999999999988999999999999999999999999999999876   799999999554   5999999     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccC----Cccee-eccchhhhhhhhhcCCCcEEEEEEeC
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKL----PRIFY-YTKESMGKNFLAKTGPHKVKVIFFSK  287 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~l----P~~~~-it~~~~~~~Fl~~~~~~~v~vl~f~~  287 (658)
                       |+++||+++|.+|..     ..|.|.++.+.|.+|+.+.+...    |.... ++..+ ++.++..   +++.++.|..
T Consensus        87 -v~~~Pt~~~~~~g~~-----~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~v~f~a  156 (241)
T 3idv_A           87 -VSGYPTIKILKKGQA-----VDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKEN-FDEVVND---ADIILVEFYA  156 (241)
T ss_dssp             -CCSSSEEEEEETTEE-----EECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTT-HHHHHHH---CSEEEEEEEC
T ss_pred             -CCcCCEEEEEcCCCc-----ccccCcccHHHHHHHHhhccCcccccccccceeccHHH-HHHhhcc---CCeEEEEEEC
Confidence             889999999988754     57999999999999998874321    11222 34444 5666643   2455665532


Q ss_pred             ----CCCCCcHHHHHHHHhhccC---ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          288 ----TGERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       288 ----~~~~~~~~~~~~A~~~~~~---~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                          .|....|.+..++..+.+.   +.|+.+....  ..+++++|+|.++||+++|+++  +++.|.|..+.+.|.+|+
T Consensus       157 ~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~g--~~~~~~g~~~~~~l~~~l  232 (241)
T 3idv_A          157 PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYM  232 (241)
T ss_dssp             TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSSEEEEEETT--EEEECCSCCSHHHHHHHH
T ss_pred             CCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCcccCEEEEEECC--eEEEecCCCCHHHHHHHH
Confidence                2334567788888877654   7777775432  4789999999999999999975  456699999999999999


Q ss_pred             HhhccC
Q 006171          361 EQNKLQ  366 (658)
Q Consensus       361 ~~~~~~  366 (658)
                      +++.-+
T Consensus       233 ~~~~~~  238 (241)
T 3idv_A          233 IEQSGA  238 (241)
T ss_dssp             HHHTTC
T ss_pred             HhhhCC
Confidence            986544

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.86  E-value=3.4e-21  Score=195.45  Aligned_cols=209  Identities=13%  Similarity=0.197  Sum_probs=151.5

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|..||.++|+..+ +++++++|+|||+||++|+++.|.|+++++.+++   .+.+++|||+.+ ....+|++++     
T Consensus        13 ~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~-~~~~l~~~~~-----   86 (244)
T 3q6o_A           13 PLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEE-TNSAVCRDFN-----   86 (244)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTST-TTHHHHHHTT-----
T ss_pred             CceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCch-hhHHHHHHcC-----
Confidence            57899999999988 6779999999999999999999999999999987   579999999532 2345999999     


Q ss_pred             ceeeeeEEEEcCCCCCCC-CCcccccCCCCHhHHHHHHHHhhccC----Ccc----eeeccchhhhhhhhhcCCCcEEEE
Q 006171          213 FRRGLPSLVAFPPGCKSS-DCMTRFEGELSVDAVTDWFATAILKL----PRI----FYYTKESMGKNFLAKTGPHKVKVI  283 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~-~~~~~Y~G~rs~~~Lv~fv~k~v~~l----P~~----~~it~~~~~~~Fl~~~~~~~v~vl  283 (658)
                       |+++||+++|.+|.... .....|.| ++.+.|.+++.+.+...    |..    ..++..+ ++.|+... ..++.++
T Consensus        87 -v~~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~-l~~~~~~~-~~~~~al  162 (244)
T 3q6o_A           87 -IPGFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEE-IDGFFARN-NEEYLAL  162 (244)
T ss_dssp             -CCSSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHH-HHTHHHHC-CCSEEEE
T ss_pred             -CCccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHH-HHHHhhcC-CCceEEE
Confidence             88999999999865410 11235566 79999999998874421    111    2233334 67777653 5567788


Q ss_pred             EEeCCCCCCcHHHHHHHHhhccC--ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC-ChHHHHHHH
Q 006171          284 FFSKTGERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM  360 (658)
Q Consensus       284 ~f~~~~~~~~~~~~~~A~~~~~~--~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~-~~~~L~~fi  360 (658)
                      +|.+.+   ....+.++..+...  +.++.+.  + ....++++|||+++|++++|..++ ++..+.... +.+.+..++
T Consensus       163 ~f~~~~---~~~~~~~~~d~~~~~~i~v~~~~--~-~~~~l~~~f~v~~~Pslvl~~~~g-~~~~~~~~~~~r~~~~~~l  235 (244)
T 3q6o_A          163 IFEXGG---SYLAREVALDLSQHKGVAVRRVL--N-TEANVVRKFGVTDFPSCYLLFRNG-SVSRVPVLMESRSFYTAYL  235 (244)
T ss_dssp             EEECTT---CCHHHHHHHHTTTCTTEEEEEEE--T-TCHHHHHHHTCCCSSEEEEEETTS-CEEECCCSSSSHHHHHHHH
T ss_pred             EEEECC---cchHHHHHHHhccCCceEEEEEe--C-chHHHHHHcCCCCCCeEEEEeCCC-CeEeeccccccHHHHHHHH
Confidence            888543   45667777766533  4444443  2 247899999999999999998765 444454333 455666666


Q ss_pred             Hh
Q 006171          361 EQ  362 (658)
Q Consensus       361 ~~  362 (658)
                      +.
T Consensus       236 ~~  237 (244)
T 3q6o_A          236 QR  237 (244)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.81  E-value=2.2e-19  Score=201.54  Aligned_cols=210  Identities=14%  Similarity=0.186  Sum_probs=152.7

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|..||.++|+..+ +++++++|.|||+||++|+++.|.|+++++++++   .+.|++|||+++ ....+|++++     
T Consensus        13 ~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d-~~~~l~~~~~-----   86 (519)
T 3t58_A           13 PLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEE-TNSAVCREFN-----   86 (519)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSG-GGHHHHHHTT-----
T ss_pred             CcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcc-ccHHHHHHcC-----
Confidence            47899999999988 6789999999999999999999999999999988   579999999742 2346999999     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccC----Cc----ceeeccchhhhhhhhhcCCCcEEEEE
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKL----PR----IFYYTKESMGKNFLAKTGPHKVKVIF  284 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~l----P~----~~~it~~~~~~~Fl~~~~~~~v~vl~  284 (658)
                       |+++||+++|.+|...-.....+.|.++.+.|.+++.+.+...    |.    ...++..+ ++.|+... ...+++++
T Consensus        87 -V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~-l~~~l~~~-~~~~vall  163 (519)
T 3t58_A           87 -IAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLND-IDGFFTRN-KADYLALV  163 (519)
T ss_dssp             -CCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHH-HTTGGGSC-CCSEEEEE
T ss_pred             -CcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHH-HHHHhccC-CCCeEEEE
Confidence             8899999999975431112355678899999999998874421    11    12234444 67777653 45688888


Q ss_pred             EeCCCCCCcHHHHHHHHhhccC--ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC-ChHHHHHHHH
Q 006171          285 FSKTGERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVME  361 (658)
Q Consensus       285 f~~~~~~~~~~~~~~A~~~~~~--~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~-~~~~L~~fi~  361 (658)
                      |.+.+   .+..+.++..|...  +.++.+.   .....++++|||+++|++++|..++.. ..+.... ..+.+..+++
T Consensus       164 F~~~~---s~~~~~~~ldl~~~~~v~v~~v~---~~~~~l~~kfgV~~~Pslvl~~~nGk~-~~~~v~~~~r~~~~~~l~  236 (519)
T 3t58_A          164 FERED---SYLGREVTLDLSQYHAVAVRRVL---NTESDLVNKFGVTDFPSCYLLLRNGSV-SRVPVLVESRSFYTSYLR  236 (519)
T ss_dssp             EECTT---CCHHHHHHHHTTTCTTEEEEEEE---TTCHHHHHHHTCCCSSEEEEEETTSCE-EECCCSSCSHHHHHHHHT
T ss_pred             ecCCc---hHHHHHHHHHhhccCCeeEEEec---CchHHHHHHcCCCCCCeEEEEeCCCce-eecccccccHHHHHHHHH
Confidence            88543   55677777777644  4454443   234689999999999999999987642 2232222 2344555655


Q ss_pred             h
Q 006171          362 Q  362 (658)
Q Consensus       362 ~  362 (658)
                      .
T Consensus       237 ~  237 (519)
T 3t58_A          237 G  237 (519)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.77  E-value=1.4e-18  Score=173.88  Aligned_cols=189  Identities=10%  Similarity=0.046  Sum_probs=135.3

Q ss_pred             CCCcEEEEEe-----ccCCCCCCCChHHHHHHHHHh--hcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171          152 DSKPWLIQVY-----SDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (658)
Q Consensus       152 ~~~~~lV~FY-----apwC~~Ck~l~P~w~~~A~~l--~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~  224 (658)
                      ...+++|.||     +|||+||+++.|+|+++|+++  .+.+.+++|||++++   .||++++      |++||||++|+
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~------v~~~Ptl~~~~   89 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK---EETEKYG------VDRVPTIVIEG   89 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCH---HHHHHTT------CCBSSEEEEES
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccH---HHHHHcC------CCcCcEEEEEC
Confidence            4567777777     899999999999999999998  567799999999554   5999999      88999999998


Q ss_pred             CCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCC---CCCcHHHHHHH
Q 006171          225 PGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQIS  300 (658)
Q Consensus       225 ~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~---~~~~~~~~~~A  300 (658)
                      ++.    ....|.|.++.+.+.+|+.+.+........++..+ ++..+.  ....+.++ |+...|   ....+.+..++
T Consensus        90 ~~~----~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~--~~~~~~~v~F~a~wC~~C~~~~~~~~~~~  162 (229)
T 2ywm_A           90 DKD----YGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKT-LELLQV--VDIPIEIWVFVTTSCGYCPSAAVMAWDFA  162 (229)
T ss_dssp             SSC----CCEEEESCCCTTHHHHHHHHHHHHHTTCCSCCHHH-HHHHTT--CCSCEEEEEEECTTCTTHHHHHHHHHHHH
T ss_pred             CCc----ccceecCCccHHHHHHHHHHHHhccCCccCCCHHH-HHHHHh--cCCCeEEEEEECCCCcchHHHHHHHHHHH
Confidence            653    35789999999999999987632111122233333 344432  12334355 444322   12346666677


Q ss_pred             HhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          301 RNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       301 ~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ..+ +.+.|+.+...  ...+++++|+|.++||+++  ++ . ...|.|..+.+.|.+|++..
T Consensus       163 ~~~-~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~--~G-~-~~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          163 LAN-DYITSKVIDAS--ENQDLAEQFQVVGVPKIVI--NK-G-VAEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             HHC-TTEEEEEEEGG--GCHHHHHHTTCCSSSEEEE--GG-G-TEEEESCCCHHHHHHHHHHH
T ss_pred             HHC-CCeEEEEEECC--CCHHHHHHcCCcccCEEEE--CC-E-EEEeeCCCCHHHHHHHHHHH
Confidence            776 45666666533  2478999999999999988  33 2 34489999999999998764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.76  E-value=2.9e-19  Score=162.40  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=92.7

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh-----cccceeeeecccchhhhHHHhhCCCC
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-----GIANTGMVELGDIRLATHLAERKPIG  209 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~-----g~~~vg~Vdc~e~~~~~~Lc~k~~i~  209 (658)
                      +.|..||.++|++.+ +++++++|.||||||++|+++.|.|+++|+.+.     +.+.+++|||++++   .+|++++  
T Consensus        15 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~--   89 (127)
T 3h79_A           15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP---DVIERMR--   89 (127)
T ss_dssp             CCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH---HHHHHTT--
T ss_pred             CceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH---hHHHhcC--
Confidence            357999999999998 578999999999999999999999999999874     34689999999554   5999999  


Q ss_pred             cccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                          |+++||+++|.+|..  ..+..|.|.++.+.|.+|+.+.
T Consensus        90 ----v~~~Pt~~~~~~g~~--~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           90 ----VSGFPTMRYYTRIDK--QEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             ----CCSSSEEEEECSSCS--SSCEECCSCCCHHHHHHHHHHH
T ss_pred             ----CccCCEEEEEeCCCC--CCceEecCCccHHHHHHHHHhc
Confidence                889999999998865  2336899999999999999764

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.76  E-value=2e-18  Score=184.76  Aligned_cols=210  Identities=14%  Similarity=0.159  Sum_probs=154.8

Q ss_pred             eEEEecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|.++|.++|...+. ...+++|.||++||++|+++.|.|+++|+++++.+.++.|||++. ....+|+.+|      |+
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~-~~~~~~~~fg------i~  190 (361)
T 3uem_A          118 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHT-DNQRILEFFG------LK  190 (361)
T ss_dssp             SEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSG-GGHHHHHHTT------CC
T ss_pred             cceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChH-HHHHHHHHcC------CC
Confidence            478999999998884 456889999999999999999999999999999999999999932 1245999999      77


Q ss_pred             e--eeEEEEcCCCCCCCCCccccc---CCCCHhHHHHHHHHhhcc----------CCc------ceeeccchhhhhhhhh
Q 006171          216 G--LPSLVAFPPGCKSSDCMTRFE---GELSVDAVTDWFATAILK----------LPR------IFYYTKESMGKNFLAK  274 (658)
Q Consensus       216 ~--yPTl~~f~~g~~~~~~~~~Y~---G~rs~~~Lv~fv~k~v~~----------lP~------~~~it~~~~~~~Fl~~  274 (658)
                      +  +||+++|..+..    ...|.   |.++.+.|.+|+.+.+.+          +|.      +..++..+ ++.++. 
T Consensus       191 ~~~~P~~~~~~~~~~----~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~-f~~~~~-  264 (361)
T 3uem_A          191 KEECPAVRLITLEEE----MTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKN-FEDVAF-  264 (361)
T ss_dssp             TTTCSEEEEEECC------CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTT-HHHHHT-
T ss_pred             ccCCccEEEEEcCCc----ccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCc-hhhhcc-
Confidence            7  999999987543    25565   899999999999886431          111      11133333 344442 


Q ss_pred             cCCCcEEEEEE-eCC---CCCCcHHHHHHHHhhccC--ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC-CCCeeee
Q 006171          275 TGPHKVKVIFF-SKT---GERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVY  347 (658)
Q Consensus       275 ~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~--~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~-~~~p~~y  347 (658)
                       ..+++.+|.| .+-   |....|.+..++..|.+.  +.++.+.   ++.. .+++|+|.++||+++|+.+ +..+..|
T Consensus       265 -~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd---~~~~-~~~~~~v~~~Pt~~~~~~~~~~~~~~~  339 (361)
T 3uem_A          265 -DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD---STAN-EVEAVKVHSFPTLKFFPASADRTVIDY  339 (361)
T ss_dssp             -CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEE---TTTC-BCSSCCCCSSSEEEEECSSSSCCCEEC
T ss_pred             -cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEE---CCcc-chhhcCCcccCeEEEEECCCCcceeEe
Confidence             2345556655 332   233467788888888765  4555553   3222 2789999999999999766 4567789


Q ss_pred             cCCCChHHHHHHHHhhc
Q 006171          348 YGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       348 ~g~~~~~~L~~fi~~~~  364 (658)
                      .|.++.+.|.+||+.+.
T Consensus       340 ~G~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          340 NGERTLDGFKKFLESGG  356 (361)
T ss_dssp             CSCSSHHHHHHHHTTTS
T ss_pred             cCCCCHHHHHHHHHhcC
Confidence            99999999999998864

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.76  E-value=2.3e-18  Score=171.73  Aligned_cols=195  Identities=14%  Similarity=0.135  Sum_probs=137.8

Q ss_pred             CCCcEEEEEecc-CCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCC
Q 006171          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (658)
Q Consensus       152 ~~~~~lV~FYap-wC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~  230 (658)
                      .+.+++|.||++ ||++|+++.|.|+++|+. .+.+.++.|||++. ....+|++++      |+++||+++|.+|..  
T Consensus        21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~-~~~~~~~~~~------v~~~Pt~~~~~~g~~--   90 (226)
T 1a8l_A           21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTP-EGKELAKRYR------IDRAPATTITQDGKD--   90 (226)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSH-HHHHHHHHTT------CCSSSEEEEEETTBC--
T ss_pred             CCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCc-ccHHHHHHcC------CCcCceEEEEcCCce--
Confidence            356788999999 999999999999999964 56679999999951 0346999999      889999999987753  


Q ss_pred             CCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCC---CCCcHHHHHHHHhhc--
Q 006171          231 DCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYW--  304 (658)
Q Consensus       231 ~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~---~~~~~~~~~~A~~~~--  304 (658)
                       ....|.|.++.+.+.+|+...+........++... .+....  ....+.++ |+.+.|   ....|.+..++..+.  
T Consensus        91 -~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~-~~~~~~--~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~  166 (226)
T 1a8l_A           91 -FGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDET-KQAIRN--IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKA  166 (226)
T ss_dssp             -CSEEEESCCCTTHHHHHHHHHHHHHHTCCCCCHHH-HHHHTT--CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHT
T ss_pred             -eeEEEeccCcHHHHHHHHHHHHhhcCCCCCCCHHH-HHHHHh--cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccc
Confidence             23679999999999999977532111111123222 333322  12345355 444322   223566777887775  


Q ss_pred             --cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          305 --AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       305 --~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                        +.+.|+.+...  ....++++|+|.++||+++|+++. ....+.|..+.+.|.+|++..
T Consensus       167 ~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          167 GKGKILGDMVEAI--EYPEWADQYNVMAVPKIVIQVNGE-DRVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             TCCCEEEEEEEGG--GCHHHHHHTTCCSSCEEEEEETTE-EEEEEESCCCHHHHHHHHHHH
T ss_pred             cCCcEEEEEEEcc--cCHHHHHhCCCcccCeEEEEeCCc-eeEEEcCCCCHHHHHHHHHHh
Confidence              35666666533  247799999999999999998653 344588999999999998764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.74  E-value=9.4e-19  Score=144.56  Aligned_cols=67  Identities=33%  Similarity=0.541  Sum_probs=63.0

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++++.+.|++|++||++|+||.+|+.||++|.+
T Consensus         7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            5699999999999999999999999999999999988889999999999999999999999999963

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.73  E-value=3.1e-18  Score=142.95  Aligned_cols=69  Identities=26%  Similarity=0.475  Sum_probs=64.5

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      +.|||+||||+++|+.++||+|||+|+++||||+++  .+.+.|++|++||++|+||.+|+.||++|.++.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            469999999999999999999999999999999886  567889999999999999999999999998764

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.70  E-value=4.8e-18  Score=146.70  Aligned_cols=70  Identities=30%  Similarity=0.572  Sum_probs=66.2

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++...++|++|++||++|+||.+|+.||++|..+..
T Consensus         7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   76 (92)
T 2o37_A            7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAAR   76 (92)
T ss_dssp             CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence            5699999999999999999999999999999999988889999999999999999999999999987643

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=6.3e-18  Score=141.42  Aligned_cols=69  Identities=28%  Similarity=0.492  Sum_probs=64.2

Q ss_pred             CccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        35 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ...|||+||||+++|+.++||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||++|..+
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            3679999999999999999999999999999999986  46788999999999999999999999999765

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=8e-18  Score=141.11  Aligned_cols=69  Identities=26%  Similarity=0.518  Sum_probs=63.8

Q ss_pred             CccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        35 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ...|||+||||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||.+|..+
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            3679999999999999999999999999999999876   35688999999999999999999999999765

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.4e-17  Score=140.68  Aligned_cols=69  Identities=29%  Similarity=0.480  Sum_probs=63.6

Q ss_pred             CccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        35 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ...|||+||||+++++.++||+|||+|+++||||+++.    +.++|++|++||++|+||.+|+.||++|..+
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            35799999999999999999999999999999999874    3467999999999999999999999999765

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=1.1e-17  Score=143.18  Aligned_cols=68  Identities=29%  Similarity=0.574  Sum_probs=63.9

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||.+|..+
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            679999999999999999999999999999999986  56788999999999999999999999999764

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=4.7e-17  Score=147.78  Aligned_cols=106  Identities=19%  Similarity=0.355  Sum_probs=94.3

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..||.++|+..+ .++++++|.||++||++|+++.|.|+++++.+++.+.++.|||++++   .+|++++      |+
T Consensus        18 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~------v~   88 (130)
T 2dml_A           18 DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQ---SLGGQYG------VQ   88 (130)
T ss_dssp             SSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCH---HHHHHHT------CC
T ss_pred             CcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCH---HHHHHcC------CC
Confidence            57899999999866 77899999999999999999999999999999888899999999554   5999998      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhc
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~  254 (658)
                      ++||+++|.+|..   ....|.|.++.+.|.+|+.+.+.
T Consensus        89 ~~Pt~~~~~~~~~---~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           89 GFPTIKIFGANKN---KPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             SSSEEEEESSCTT---SCEECCSCCSHHHHHHHHHHHHH
T ss_pred             ccCEEEEEeCCCC---eEEEeecCCCHHHHHHHHHHHHh
Confidence            9999999998764   24778999999999999988744

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.68  E-value=1.9e-15  Score=154.04  Aligned_cols=228  Identities=14%  Similarity=0.128  Sum_probs=154.3

Q ss_pred             CCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEE
Q 006171          256 LPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV  335 (658)
Q Consensus       256 lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlv  335 (658)
                      +|.+..+++.+.++.|++..  ..++|.||.+.+......+..+|..+++.+.|+.+.     +..++++|+++. |+|+
T Consensus         5 gP~v~~l~s~~~~~~~l~~~--~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~~-----~~~v~~~~~~~~-p~i~   76 (252)
T 2h8l_A            5 SPASVPLRTEEEFKKFISDK--DASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTN-----VESLVNEYDDNG-EGII   76 (252)
T ss_dssp             -CCEEECCSHHHHHHHHTSS--SCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEEC-----CHHHHHHHCSSS-EEEE
T ss_pred             CCCceeecCHHHHHHHhhcC--CeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEEC-----hHHHHHHhCCCC-CcEE
Confidence            67777787666688888643  234555676543223456677899999999999874     456999999986 9999


Q ss_pred             EEeC------CCCCeeee-cCCCChHHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCCC--
Q 006171          336 FLKD------PGVKPVVY-YGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLS--  406 (658)
Q Consensus       336 lfk~------~~~~p~~y-~g~~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~--  406 (658)
                      +|++      .++.++.| .|.++.+.|.+||+.+.+|++++++..+..+ +..       .     .+|++++....  
T Consensus        77 ~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~-~~~-------~-----~~~v~~~~~~~~~  143 (252)
T 2h8l_A           77 LFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDL-IQG-------K-----DLLIAYYDVDYEK  143 (252)
T ss_dssp             EECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHH-HSS-------S-----SEEEEEECCBTTT
T ss_pred             EEcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhh-hcC-------C-----CeEEEEeecchhh
Confidence            9996      34577889 9999999999999999999999999999876 331       1     37777664322  


Q ss_pred             --hhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcC--CCcEEEEEEeccchHHHHHHHcccCCcccccCCcCC
Q 006171          407 --PELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR--NKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRD  482 (658)
Q Consensus       407 --~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~--~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~  482 (658)
                        ...+..++.++++|+                      +++  +..+.|+|+|++.+.+.++.|-...          +
T Consensus       144 ~~~~~~~~~~~~~~vA~----------------------~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~----------~  191 (252)
T 2h8l_A          144 NAKGSNYWRNRVMMVAK----------------------KFLDAGHKLNFAVASRKTFSHELSDFGLES----------T  191 (252)
T ss_dssp             BHHHHHHHHHHHHHHHH----------------------HHHHTTCCCEEEEEETTTTHHHHGGGTCCC----------C
T ss_pred             cchhHHHHHHHHHHHHH----------------------HccccCceEEEEEEchHHHHHHHHHcCCCC----------c
Confidence              123456777777777                      444  3459999999998888888773310          0


Q ss_pred             CCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhH--HHHHHHHHhhcCCCCCCCccc
Q 006171          483 MSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQ--IAKWVSEIIQDGDSKDLPFYR  560 (658)
Q Consensus       483 ~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~i~~~~~~g~~~~l~~~~  560 (658)
                      ..+.|.|+|+    |...  .||.      +   ++               .-+.+.  |.+||.+++.  +.....+++
T Consensus       192 ~~~~P~v~i~----~~~~--~ky~------~---~~---------------~~t~~~~~i~~F~~~~~~--Gkl~~~~kS  239 (252)
T 2h8l_A          192 AGEIPVVAIR----TAKG--EKFV------M---QE---------------EFSRDGKALERFLQDYFD--GNLKRYLKS  239 (252)
T ss_dssp             SCSSCEEEEE----CTTS--CEEE------C---CS---------------CCCTTSHHHHHHHHHHHH--TCSCCCC--
T ss_pred             cCCCCEEEEE----eCcC--cEec------C---Cc---------------ccCcchHHHHHHHHHHHC--CCccccccC
Confidence            1256999998    6544  3554      2   21               113356  9999999999  555677789


Q ss_pred             CCCCCCCC
Q 006171          561 AKTPELVP  568 (658)
Q Consensus       561 ~~~p~l~~  568 (658)
                      +++|+-++
T Consensus       240 e~iPe~~~  247 (252)
T 2h8l_A          240 EPIPESND  247 (252)
T ss_dssp             --------
T ss_pred             CCCCCCCC
Confidence            99999843

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.67  E-value=1.1e-17  Score=148.07  Aligned_cols=99  Identities=15%  Similarity=0.261  Sum_probs=83.5

Q ss_pred             EEec-CCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          139 NVVT-SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       139 ~~Lt-~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      ..++ .++|++.+.  ++++++|.||||||++|+.+.|.|+++++.+.+ ..+++|||++++   .||++++      |+
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~---~l~~~~~------V~   72 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDECE---DIAQDNQ------IA   72 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETTTCH---HHHHHTT------CC
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEecccCH---HHHHHcC------CC
Confidence            3454 468998883  578999999999999999999999999998865 579999999654   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...+.| .+.+.|.+|+.++
T Consensus        73 ~~PT~~~~~~G~~----v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           73 CMPTFLFMKNGQK----LDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             BSSEEEEEETTEE----EEEEES-CCHHHHHHHHHHH
T ss_pred             eecEEEEEECCEE----EEEEeC-cCHHHHHHHHHhc
Confidence            9999999998864    456778 6899999999764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.9e-17  Score=141.71  Aligned_cols=69  Identities=32%  Similarity=0.512  Sum_probs=64.3

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.  +.++|++|++||++|+||.+|+.||.+|..+.
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (88)
T 2ctr_A            6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF   76 (88)
T ss_dssp             CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            5799999999999999999999999999999999873  56789999999999999999999999997764

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.66  E-value=5.8e-15  Score=150.47  Aligned_cols=228  Identities=13%  Similarity=0.080  Sum_probs=154.9

Q ss_pred             cCCcceeeccchhhhhhhhh-cCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCE
Q 006171          255 KLPRIFYYTKESMGKNFLAK-TGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPA  333 (658)
Q Consensus       255 ~lP~~~~it~~~~~~~Fl~~-~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Pt  333 (658)
                      .+|.+..+++.+.++.|++. ..  .++|.||.+.+......+..+|..+++.+.|+.+.     +.+++++|+++. |+
T Consensus         4 ~gP~v~~l~s~~~~~~~~~~~~~--v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t~-----~~~v~~~~~v~~-p~   75 (250)
T 3ec3_A            4 GSPPSKEILTLKQVQEFLKDGDD--VVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTF-----STEIAKFLKVSL-GK   75 (250)
T ss_dssp             -CCSSEECCCHHHHHHHHHHCSS--CEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEEC-----CHHHHHHHTCCS-SE
T ss_pred             CCCCceecCCHHHHHHHHhcCCC--eEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEEC-----cHHHHHHcCCCC-Ce
Confidence            36877777775557888875 32  34444666544334556677899999999999873     456889999986 99


Q ss_pred             EEEEeC------CCCCeeeec--CCCChHHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCC
Q 006171          334 IVFLKD------PGVKPVVYY--GSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL  405 (658)
Q Consensus       334 lvlfk~------~~~~p~~y~--g~~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~  405 (658)
                      |++|++      .++.++.|.  |.++.+.|.+||+.+.+|++++++..|..+. ..       ++    .+|++++..+
T Consensus        76 ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~-~~-------~~----~l~~~~~~~d  143 (250)
T 3ec3_A           76 LVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKR-YS-------KR----PLVVVYYSVD  143 (250)
T ss_dssp             EEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHH-SC-------SS----SEEEEEECCC
T ss_pred             EEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhh-hc-------cC----ccEEEEEecc
Confidence            999996      345677898  4789999999999999999999999997652 21       12    4777766422


Q ss_pred             -----ChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccccCCc
Q 006171          406 -----SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGAR  480 (658)
Q Consensus       406 -----~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~  480 (658)
                           .+..+.+++.++.+|+                      .|+  ++.|+|+|++...+.++.|-....        
T Consensus       144 ~~~~~~~~~~~~~~~~~~vAk----------------------~~k--ki~F~~~d~~~~~~~l~~fgl~~~--------  191 (250)
T 3ec3_A          144 FSFDYRTATQFWRNKVLEVAK----------------------DFP--EYTFAIADEEDYATEVKDLGLSES--------  191 (250)
T ss_dssp             CSTTTHHHHHHHHHHHHHHHT----------------------TCT--TSEEEEEETTTTHHHHHHTTCSSC--------
T ss_pred             cccccchhHHHHHHHHHHHHH----------------------hhc--ceeEEEEcHHHHHHHHHHcCCCcc--------
Confidence                 2234556777776666                      787  599999999988888887733211        


Q ss_pred             CCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhhcCCCCCCCccc
Q 006171          481 RDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYR  560 (658)
Q Consensus       481 ~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~  560 (658)
                         ...|.++++    |...  .||.      +   +.+              .-+.+.|.+|+.+++.  +.....+++
T Consensus       192 ---~~~p~~~~~----~~~~--~ky~------~---~~~--------------~~t~~~i~~Fv~~~~~--Gkl~p~~kS  237 (250)
T 3ec3_A          192 ---GGDVNAAIL----DESG--KKFA------M---EPE--------------EFDSDALREFVMAFKK--GKLKPVIKS  237 (250)
T ss_dssp             ---SCSCEEEEE----CTTS--CEEE------C---CCC--------------SCCHHHHHHHHHHHHT--TCCCCCC--
T ss_pred             ---CCCcEEEEE----cCCC--ceec------C---Ccc--------------cCCHHHHHHHHHHHHC--CCccceeec
Confidence               012688887    6554  4665      2   321              1256899999999999  677888899


Q ss_pred             CCCCCCCC
Q 006171          561 AKTPELVP  568 (658)
Q Consensus       561 ~~~p~l~~  568 (658)
                      +++|+-++
T Consensus       238 epiPe~~~  245 (250)
T 3ec3_A          238 QPVPKNNK  245 (250)
T ss_dssp             --------
T ss_pred             CCCCCCCC
Confidence            99999843

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.66  E-value=2.5e-17  Score=144.02  Aligned_cols=68  Identities=26%  Similarity=0.510  Sum_probs=62.0

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .|||+||||+++|+.++||+|||+|+++||||+++.    +.+.|++|++||++|+||.+|+.||.+|..+.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~   73 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL   73 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            489999999999999999999999999999999874    45789999999999999999999999987664

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.66  E-value=3.7e-17  Score=144.18  Aligned_cols=69  Identities=28%  Similarity=0.521  Sum_probs=63.9

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||++|..+.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            369999999999999999999999999999999876   356789999999999999999999999998764

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=6.9e-17  Score=143.81  Aligned_cols=70  Identities=26%  Similarity=0.433  Sum_probs=64.9

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~  105 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.++|++|++||++|+||.+|+.||.+|..+..
T Consensus        16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            6799999999999999999999999999999999874   467899999999999999999999999987643

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=4.1e-17  Score=146.01  Aligned_cols=69  Identities=25%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.++|++|++||++|+||.+|+.||++|..+.
T Consensus        19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            5799999999999999999999999999999998863   57889999999999999999999999987654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.65  E-value=1.4e-16  Score=142.54  Aligned_cols=102  Identities=20%  Similarity=0.393  Sum_probs=89.4

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-----ccceeeeecccchhhhHHHhhCCCCc
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-----IANTGMVELGDIRLATHLAERKPIGQ  210 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-----~~~vg~Vdc~e~~~~~~Lc~k~~i~k  210 (658)
                      .|..|+.++|+..+ .++++++|.|||+||++|+++.|.|+++++++++     .+.++.|||+++.    +++  +   
T Consensus         8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~--~---   78 (121)
T 2djj_A            8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND----VPD--E---   78 (121)
T ss_dssp             SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----CSS--C---
T ss_pred             CeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----ccc--c---
Confidence            57889999999997 7889999999999999999999999999999987     5799999999664    554  5   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |+++||+++|.+|..  .....|.|.++.+.|.+|+.+.
T Consensus        79 ---v~~~Pt~~~~~~~~~--~~~~~~~G~~~~~~l~~~i~~~  115 (121)
T 2djj_A           79 ---IQGFPTIKLYPAGAK--GQPVTYSGSRTVEDLIKFIAEN  115 (121)
T ss_dssp             ---CSSSSEEEEECSSCT--TSCCCCCCCSCHHHHHHHHHHT
T ss_pred             ---cCcCCeEEEEeCcCC--CCceEecCCCCHHHHHHHHHhc
Confidence               889999999998753  1246789999999999999887

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.64  E-value=1.2e-16  Score=154.23  Aligned_cols=107  Identities=15%  Similarity=0.310  Sum_probs=91.1

Q ss_pred             eEEEecCCCCCcccc--CCCcEEEEEec-------cCCCCCCCChHHHHHHHHHhh-----cccceeeeecccchhhhHH
Q 006171          137 AFNVVTSEDFPSIFH--DSKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLE-----GIANTGMVELGDIRLATHL  202 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~--~~~~~lV~FYa-------pwC~~Ck~l~P~w~~~A~~l~-----g~~~vg~Vdc~e~~~~~~L  202 (658)
                      .|+.||++||+++|.  .+.+++|.|+|       +||++|+.++|+|+++|+++.     +.+.|++||+++++   .+
T Consensus        19 ~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~---~l   95 (178)
T 3ga4_A           19 GVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP---QL   95 (178)
T ss_dssp             SEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH---HH
T ss_pred             CCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH---HH
Confidence            579999999999884  36689999999       499999999999999999998     77899999999665   49


Q ss_pred             HhhCCCCcccceeeeeEEEEcCCCCCCC--------CCcccc---cC-CCCHhHHHHHHHHh
Q 006171          203 AERKPIGQIFFRRGLPSLVAFPPGCKSS--------DCMTRF---EG-ELSVDAVTDWFATA  252 (658)
Q Consensus       203 c~k~~i~k~f~V~~yPTl~~f~~g~~~~--------~~~~~Y---~G-~rs~~~Lv~fv~k~  252 (658)
                      +++++      |+++|||++|++|....        .....|   .| .++++.|.+|+.+.
T Consensus        96 a~~~~------I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~  151 (178)
T 3ga4_A           96 VKDLK------LQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI  151 (178)
T ss_dssp             HHHTT------CCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred             HHHcC------CCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence            99999      99999999999986421        012345   35 89999999999987

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.64  E-value=1.1e-16  Score=142.01  Aligned_cols=101  Identities=9%  Similarity=0.076  Sum_probs=91.1

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      |+.||.++|++.+ ++++++|.||++||++|+.+.|.|+++++++++.+.++.|||++++   .+|++++      |.++
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------v~~~   72 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ---ETAGKYG------VMSI   72 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCC---SHHHHTT------CCSB
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCH---HHHHHcC------CCcc
Confidence            5789999999999 8899999999999999999999999999999877899999999654   4999999      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        73 Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  103 (112)
T 2voc_A           73 PTLLVLKDGEV----VETSVGFKPKEALQELVNKH  103 (112)
T ss_dssp             SEEEEEETTEE----EEEEESCCCHHHHHHHHHTT
T ss_pred             cEEEEEeCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            99999977753    46789999999999999887

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=4.6e-17  Score=140.58  Aligned_cols=69  Identities=29%  Similarity=0.518  Sum_probs=63.7

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|||+||||+++++.++||+|||+|+++||||+++.    +.++|++|++||++|+||.+|+.||++|..+.
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            5699999999999999999999999999999999874    35689999999999999999999999987653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=6e-17  Score=147.32  Aligned_cols=107  Identities=17%  Similarity=0.305  Sum_probs=94.4

Q ss_pred             cceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh----cccceeeeecccchhhhHHHhhCCCC
Q 006171          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIG  209 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~----g~~~vg~Vdc~e~~~~~~Lc~k~~i~  209 (658)
                      .+.|..||.++|+..+ .++++++|.||++||++|+++.|.|+++++.++    +.+.++.|||++++   .+|++++  
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~--   80 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ---VLASRYG--   80 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC---HHHHHHT--
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH---HHHHhCC--
Confidence            3457899999999887 678999999999999999999999999999997    66799999999554   4999998  


Q ss_pred             cccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhc
Q 006171          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (658)
Q Consensus       210 k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~  254 (658)
                          |+++||+++|.+|..    ...|.|.++.+.|.+|+.+.+.
T Consensus        81 ----v~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           81 ----IRGFPTIKIFQKGES----PVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             ----CCSSSEEEEEETTEE----EEEECSCCSHHHHHHHHHHHHH
T ss_pred             ----CCeeCeEEEEeCCCc----eEEecCCCCHHHHHHHHHHHhh
Confidence                889999999998753    5778999999999999988743

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=1.6e-16  Score=146.14  Aligned_cols=103  Identities=17%  Similarity=0.294  Sum_probs=93.0

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..|+.++|+..+.+++++||.||++||++|+++.|.|+++++.+.+.   +.++.|||+++.   .+|++++      
T Consensus        18 ~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~------   88 (140)
T 2dj1_A           18 GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS---MLASKFD------   88 (140)
T ss_dssp             TEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH---HHHHHTT------
T ss_pred             CCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH---HHHHHCC------
Confidence            5889999999998888899999999999999999999999999999875   699999999554   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      |.++||+++|.+|.     ...|.|.++.+.|.+|+.+.+
T Consensus        89 v~~~Pt~~~~~~G~-----~~~~~g~~~~~~l~~~l~~~~  123 (140)
T 2dj1_A           89 VSGYPTIKILKKGQ-----AVDYDGSRTQEEIVAKVREVS  123 (140)
T ss_dssp             CCSSSEEEEEETTE-----EEECCSCCCHHHHHHHHHHHH
T ss_pred             CCccCeEEEEECCc-----EEEcCCCCCHHHHHHHHHHhc
Confidence            88999999998774     368899999999999999874

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.63  E-value=6e-17  Score=142.41  Aligned_cols=103  Identities=16%  Similarity=0.304  Sum_probs=93.1

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..+|.++|++.+ .++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|++++      |+
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------v~   75 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEK---TLFQRFS------LK   75 (111)
T ss_dssp             CSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH---HHHHHTT------CC
T ss_pred             cceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcCh---hHHHhcC------CC
Confidence            46889999999999 78899999999999999999999999999999887899999999554   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|.+|..    ...|.|.++.+.|.+|+.+.
T Consensus        76 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  108 (111)
T 3gnj_A           76 GVPQILYFKDGEY----KGKMAGDVEDDEVEQMIADV  108 (111)
T ss_dssp             SSCEEEEEETTEE----EEEEESSCCHHHHHHHHHHH
T ss_pred             cCCEEEEEECCEE----EEEEeccCCHHHHHHHHHHH
Confidence            9999999988753    46789999999999999876

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.6e-16  Score=139.03  Aligned_cols=67  Identities=24%  Similarity=0.377  Sum_probs=61.7

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.++|++|++||++|+||.+|+.||++...
T Consensus        16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            6799999999999999999999999999999999863   567899999999999999999999986543

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=2.2e-16  Score=143.85  Aligned_cols=106  Identities=17%  Similarity=0.274  Sum_probs=90.5

Q ss_pred             ceEEEecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..|+.++|+..+. ++++++|.|||+||++|+++.|.|+++++.++  +.+.++.|||+++.   .+|++++     
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~-----   78 (133)
T 2dj3_A            7 GPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND---ITNDQYK-----   78 (133)
T ss_dssp             CSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC---CCCSSCC-----
T ss_pred             CceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH---HHHhhcC-----
Confidence            3578999999999984 68999999999999999999999999999997  45699999999654   3777787     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCccccc-CCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~-G~rs~~~Lv~fv~k~  252 (658)
                       |+++||+++|.+|..  .....|. |.++.+.|.+|+.+.
T Consensus        79 -v~~~Pt~~~~~~g~~--~~~~~~~gg~~~~~~l~~~l~~~  116 (133)
T 2dj3_A           79 -VEGFPTIYFAPSGDK--KNPIKFEGGNRDLEHLSKFIDEH  116 (133)
T ss_dssp             -CSSSSEEEEECTTCT--TSCEECCSSCCSTTHHHHHHHHH
T ss_pred             -CCcCCEEEEEeCCCc--ccceEecCCCcCHHHHHHHHHHh
Confidence             889999999988764  1234577 569999999999988

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.62  E-value=2.6e-16  Score=139.82  Aligned_cols=105  Identities=17%  Similarity=0.304  Sum_probs=91.8

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..+|.++|+..+.++++++|.||++||++|+++.|.|+++++.+++   .+.++.|||++++   .+|++++      
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~------   78 (120)
T 1mek_A            8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES---DLAQQYG------   78 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC---SSHHHHT------
T ss_pred             CcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH---HHHHHCC------
Confidence            578999999998888889999999999999999999999999999874   4689999999554   4889988      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|.+|..  .....|.|.++.+.|.+|+.+.
T Consensus        79 v~~~Pt~~~~~~g~~--~~~~~~~g~~~~~~l~~~l~~~  115 (120)
T 1mek_A           79 VRGYPTIKFFRNGDT--ASPKEYTAGREADDIVNWLKKR  115 (120)
T ss_dssp             CCSSSEEEEEESSCS--SSCEECCCCSSHHHHHHHHHTT
T ss_pred             CCcccEEEEEeCCCc--CCcccccCccCHHHHHHHHHhc
Confidence            889999999988753  1126789999999999999876

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.62  E-value=6e-17  Score=142.28  Aligned_cols=104  Identities=16%  Similarity=0.284  Sum_probs=90.7

Q ss_pred             cceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcc
Q 006171          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      .+.|..||.++|++.+. +++++|.||++||++|+++.|.|+++++.+..   .+.++.|||++++   .+|++++    
T Consensus         4 ~~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~----   75 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER---NICSKYS----   75 (111)
T ss_dssp             -CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH---HHHHHTT----
T ss_pred             CCcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH---hHHHhcC----
Confidence            34578999999999997 77999999999999999999999999998753   4589999999554   5999999    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |+++||+++|.+|..    ...|.|.++.+.|.+|+.++
T Consensus        76 --v~~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           76 --VRGYPTLLLFRGGKK----VSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             --CCSSSEEEEEETTEE----EEEECSCCSHHHHHHHHHHH
T ss_pred             --CCcccEEEEEeCCcE----EEeccCCcCHHHHHHHHHhc
Confidence              889999999988854    46889999999999999865

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.62  E-value=2.2e-16  Score=138.31  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=91.3

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..+|.++|+..+ .++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||++++   .+|++++      |.
T Consensus         3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~   73 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYG------IR   73 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT---THHHHTT------CC
T ss_pred             cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCH---HHHHHcC------Cc
Confidence            47899999999776 77899999999999999999999999999999877899999999654   4899998      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        74 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  106 (108)
T 2trx_A           74 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ccCEEEEEeCCEE----EEEEecCCCHHHHHHHHHHh
Confidence            9999999987753    45688999999999999775

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.62  E-value=8.3e-17  Score=139.46  Aligned_cols=66  Identities=21%  Similarity=0.446  Sum_probs=60.8

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---------hHHHHHHHHHHHHHcCChhhhhcccccCc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---------STADFLKIQYAYELLTDPLWKRNYDVYGI  101 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---------~~~~f~~i~~Aye~L~d~~~R~~YD~~g~  101 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.         +.++|++|++||++|+||.+|+.||.+..
T Consensus        15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            6799999999999999999999999999999999762         45779999999999999999999998754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=7e-16  Score=159.62  Aligned_cols=103  Identities=17%  Similarity=0.274  Sum_probs=93.1

Q ss_pred             eEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          137 AFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      .|..+|.++|++.+.  .+++++|.||+|||++|+.+.|.|+++++++++.+.|++|||++++   .+|++++      |
T Consensus         8 ~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v   78 (287)
T 3qou_A            8 NIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ---MIAAQFG------L   78 (287)
T ss_dssp             TEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCH---HHHHTTT------C
T ss_pred             ccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCH---HHHHHcC------C
Confidence            478999999999884  3899999999999999999999999999999988899999999654   5999999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +++||+++|.+|..    ...|.|.++.+.+.+|+...
T Consensus        79 ~~~Pt~~~~~~G~~----~~~~~g~~~~~~l~~~l~~~  112 (287)
T 3qou_A           79 RAIPTVYLFQNGQP----VDGFQGPQPEEAIRALLDXV  112 (287)
T ss_dssp             CSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCEE----EEEeeCCCCHHHHHHHHHHH
Confidence            89999999988753    46789999999999999988

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.61  E-value=1.5e-16  Score=138.95  Aligned_cols=103  Identities=17%  Similarity=0.323  Sum_probs=93.0

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .|..+|.++|+..+.++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|++++      |.+
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------i~~   75 (109)
T 3tco_A            5 VTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ---KIADKYS------VLN   75 (109)
T ss_dssp             CCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             eEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCH---HHHHhcC------ccc
Confidence            4688999999999988999999999999999999999999999999888899999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.|.++.+.|.+++.+.
T Consensus        76 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  107 (109)
T 3tco_A           76 IPTTLIFVNGQL----VDSLVGAVDEDTLESTVNKY  107 (109)
T ss_dssp             SSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCcE----EEeeeccCCHHHHHHHHHHH
Confidence            999999987754    46789999999999999876

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.61  E-value=1.9e-16  Score=137.86  Aligned_cols=102  Identities=20%  Similarity=0.276  Sum_probs=91.6

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .|..+|.++|++.+ ++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|++++      |++
T Consensus         4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~~   73 (106)
T 3die_A            4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP---STAAKYE------VMS   73 (106)
T ss_dssp             CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCH---HHHHhCC------Ccc
Confidence            36889999999999 8899999999999999999999999999999888899999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.|.++.+.|.+|+.+.
T Consensus        74 ~Pt~~~~~~G~~----~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           74 IPTLIVFKDGQP----VDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             BSEEEEEETTEE----EEEEESCCCHHHHHHHHHTT
T ss_pred             cCEEEEEeCCeE----EEEEeCCCCHHHHHHHHHHh
Confidence            999999987753    46789999999999998764

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.61  E-value=3.3e-16  Score=136.54  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=91.3

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..++.++|+..+ .++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||++++   .+|++++      |.
T Consensus         3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~   73 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP---ETPNAYQ------VR   73 (107)
T ss_dssp             CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCC---HHHHHTT------CC
T ss_pred             ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCH---HHHHhcC------CC
Confidence            47899999999877 78899999999999999999999999999999877899999999554   4999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        74 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           74 SIPTLMLVRDGKV----IDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHT
T ss_pred             ccCEEEEEeCCEE----EEEecCCCCHHHHHHHHHhc
Confidence            9999999977753    45688999999999998764

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.61  E-value=1.3e-16  Score=142.04  Aligned_cols=68  Identities=26%  Similarity=0.335  Sum_probs=63.0

Q ss_pred             ccCcccccCccCCC-CHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYS-SVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a-~~~eIk~ayr~l~~~~HPD~~~~------~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|||+||||+++| +.++||+|||+|+++||||++++      +.++|++|++||++|+||.+|+.||++|...
T Consensus        14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            67999999999999 99999999999999999999864      4577999999999999999999999998654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.61  E-value=1.9e-16  Score=137.96  Aligned_cols=102  Identities=12%  Similarity=0.196  Sum_probs=89.7

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      |..||.++|+..+.++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|++++      |.++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~------v~~~   72 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---ETTSQFG------IMSI   72 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCH---HHHHHTT------CCSS
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCH---HHHHHcC------Cccc
Confidence            578999999977788899999999999999999999999999999877899999999554   5999999      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ||+++|++|..    ...|.|..+.+.|.+++.+.
T Consensus        73 Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           73 PTLILFKGGRP----VKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             SEEEEEETTEE----EEEEESCCCHHHHHHHTTTT
T ss_pred             cEEEEEeCCeE----EEEEecCCCHHHHHHHHHHH
Confidence            99999977753    45688999999999987654

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.60  E-value=2.7e-16  Score=137.67  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=76.6

Q ss_pred             ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      -|.++|++.+.++++++|.||||||++|+.+.|.|+++++.+. .+.++.|||++++   .+|++++      |+++||+
T Consensus         6 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~---~l~~~~~------v~~~Pt~   75 (105)
T 4euy_A            6 KTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQ---EIAGRYA------VFTGPTV   75 (105)
T ss_dssp             ----CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC------------------CCCCEE
T ss_pred             CCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCH---HHHHhcC------CCCCCEE
Confidence            3568899999889999999999999999999999999999884 5799999999655   4889988      8899999


Q ss_pred             EEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++|.+|..    ...+.|.++.+.|.+++.+.
T Consensus        76 ~~~~~G~~----~~~~~g~~~~~~l~~~l~~~  103 (105)
T 4euy_A           76 LLFYNGKE----ILRESRFISLENLERTIQLF  103 (105)
T ss_dssp             EEEETTEE----EEEEESSCCHHHHHHHHHTT
T ss_pred             EEEeCCeE----EEEEeCCcCHHHHHHHHHHh
Confidence            99988754    46778999999999998765

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.60  E-value=4.3e-16  Score=145.19  Aligned_cols=105  Identities=17%  Similarity=0.297  Sum_probs=94.8

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .+..++.++|+..+..+++++|.||++||++|+++.|.|+++++.+.+.+.++.||+++++   .++++++      |.+
T Consensus        39 ~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~------v~~  109 (148)
T 3p2a_A           39 EVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP---ALSTRFR------IRS  109 (148)
T ss_dssp             CCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             CceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCH---HHHHHCC------CCc
Confidence            4689999999999988999999999999999999999999999999888899999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhc
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~  254 (658)
                      +||+++|.+|..    ...|.|.++.+.|.+|+.+.+.
T Consensus       110 ~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          110 IPTIMLYRNGKM----IDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             SSEEEEEETTEE----EEEESSCCCHHHHHHHHHHHHH
T ss_pred             cCEEEEEECCeE----EEEEeCCCCHHHHHHHHHHHhc
Confidence            999999988754    4678999999999999988744

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.60  E-value=3.6e-16  Score=142.73  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=91.5

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      +.|..||.++|++.+ .++++++|.||++||++|+++.|.|+++++.+++.+.++.|||++++   .+|++++      |
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~------v   92 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYG------I   92 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCC---TTSGGGT------C
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcC------C
Confidence            357889999999776 78899999999999999999999999999999877899999999654   4888888      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        93 ~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  126 (128)
T 2o8v_B           93 RGIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  126 (128)
T ss_dssp             CSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CccCEEEEEeCCEE----EEEEcCCCCHHHHHHHHHHh
Confidence            89999999977753    45689999999999999875

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.59  E-value=3.5e-16  Score=144.78  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=92.7

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..||.++|++.+ .++++++|.||++||++|+++.|.|+++++.+.+.+.++.|||++++   .+|++++      |+
T Consensus         7 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~------v~   77 (140)
T 3hz4_A            7 SIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNP---WTAEKYG------VQ   77 (140)
T ss_dssp             TEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCH---HHHHHHT------CC
T ss_pred             ceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCH---hHHHHCC------CC
Confidence            57999999999554 78999999999999999999999999999999988899999999554   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|.+|..    ...|.|.++.+.|.+|+.+.
T Consensus        78 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  110 (140)
T 3hz4_A           78 GTPTFKFFCHGRP----VWEQVGQIYPSILKNAVRDM  110 (140)
T ss_dssp             EESEEEEEETTEE----EEEEESSCCHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence            9999999988754    46789999999999999887

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.59  E-value=4.3e-16  Score=137.48  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=91.5

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..+|.++|+..+ +++++++|.||++||++|+.+.|.|+++++.+++.+.+..|||++++   .+|++++      |.
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~   76 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP---GTAAKYG------VM   76 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTT------CC
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCH---HHHHhCC------CC
Confidence            47889999998777 67899999999999999999999999999999877899999999554   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        77 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  109 (112)
T 1t00_A           77 SIPTLNVYQGGEV----AKTIVGAKPKAAIVRDLEDF  109 (112)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHTHHH
T ss_pred             cccEEEEEeCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            9999999987753    45688999999999998876

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=5.4e-16  Score=140.24  Aligned_cols=102  Identities=19%  Similarity=0.397  Sum_probs=89.3

Q ss_pred             cceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-ccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .+.|..||.++|++.++..  ++|.|||+||++|+++.|.|+++++.+++ .+.++.|||++++   .+|++++      
T Consensus         6 ~~~v~~l~~~~f~~~~~~~--vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~------   74 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQP---GLSGRFI------   74 (126)
T ss_dssp             CCSEEECCTTTHHHHTSSE--EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCH---HHHHHTT------
T ss_pred             CCccEEecHHHHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCH---HHHHHcC------
Confidence            3468999999999877543  99999999999999999999999999986 5699999999554   4999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|++|.     ...|.|.++.+.|.+|+.+.
T Consensus        75 v~~~Pt~~~~~~G~-----~~~~~G~~~~~~l~~~l~~~  108 (126)
T 1x5e_A           75 INALPTIYHCKDGE-----FRRYQGPRTKKDFINFISDK  108 (126)
T ss_dssp             CCSSSEEEEEETTE-----EEECCSCCCHHHHHHHHHTC
T ss_pred             CcccCEEEEEeCCe-----EEEeecCCCHHHHHHHHHHH
Confidence            88999999997774     36789999999999999876

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.59  E-value=7.7e-16  Score=136.00  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=92.1

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..++.++|+..+ .++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|++++      |.
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~------v~   78 (115)
T 1thx_A            8 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP---TTVKKYK------VE   78 (115)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCH---HHHHHTT------CC
T ss_pred             ceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCH---HHHHHcC------CC
Confidence            47899999999887 78899999999999999999999999999999877899999999554   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        79 ~~Pt~~~~~~G~~----~~~~~g~~~~~~l~~~l~~~  111 (115)
T 1thx_A           79 GVPALRLVKGEQI----LDSTEGVISKDKLLSFLDTH  111 (115)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ceeEEEEEcCCEE----EEEecCCCCHHHHHHHHHHH
Confidence            9999999977753    45688999999999999876

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.59  E-value=2.1e-16  Score=141.77  Aligned_cols=106  Identities=13%  Similarity=0.242  Sum_probs=91.0

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..||.++|++.+ .++++++|.||++||++|+++.|.|+++++.+.+.+.++.|||++++   .+|++++      |+
T Consensus         4 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~   74 (122)
T 3aps_A            4 ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP---QTCQKAG------IK   74 (122)
T ss_dssp             CSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH---HHHHHTT------CC
T ss_pred             chhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCH---HHHHHcC------CC
Confidence            46889999996554 78899999999999999999999999999999887899999999554   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCC----CCHhHHHHHHHHhhcc
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGE----LSVDAVTDWFATAILK  255 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~----rs~~~Lv~fv~k~v~~  255 (658)
                      ++||+++|.+|..    ...|.|.    ++.+.|.+|+.+.+..
T Consensus        75 ~~Pt~~~~~~~~~----~~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           75 AYPSVKLYQYERA----KKSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             SSSEEEEEEEEGG----GTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             ccceEEEEeCCCc----cceeeccccCcCCHHHHHHHHHHHHHh
Confidence            9999999977653    3556665    8999999999887443

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.59  E-value=3.7e-16  Score=134.94  Aligned_cols=101  Identities=13%  Similarity=0.191  Sum_probs=90.4

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      |..||.++|++.+.++++++|.||++||++|+.+.|.++++++.+.+ +.++.|||++++   .+|++++      |+++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~~~~~------v~~~   70 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENP---DIAARYG------VMSL   70 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTT------CCSS
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCH---HHHHhCC------cccc
Confidence            46799999999998889999999999999999999999999999987 899999999554   5999999      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        71 Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  101 (104)
T 2e0q_A           71 PTVIFFKDGEP----VDEIIGAVPREEIEIRIKNL  101 (104)
T ss_dssp             CEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CEEEEEECCeE----hhhccCCCCHHHHHHHHHHH
Confidence            99999977753    45789999999999999876

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.59  E-value=4.1e-16  Score=143.76  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=92.1

Q ss_pred             eEEEecCCCCCcccc-CCCcEEEEEeccCC--CCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFH-DSKPWLIQVYSDGS--YLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~-~~~~~lV~FYapwC--~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      ....+|.+||++.|. +..++||.|||+||  ++|+.++|+.+++|+++.+.++|++||.++++   .|+.+|+      
T Consensus        16 g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~---~la~~yg------   86 (137)
T 2qsi_A           16 APTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAER---GLMARFG------   86 (137)
T ss_dssp             -CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHH---HHHHHHT------
T ss_pred             CCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCH---HHHHHcC------
Confidence            446899999999995 44599999999999  99999999999999999998999999999555   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      |++.|||++|++|..    .....|.++.+.|.+++.+.+
T Consensus        87 V~siPTlilFkdG~~----v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           87 VAVCPSLAVVQPERT----LGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             CCSSSEEEEEECCEE----EEEEESCCCHHHHHHHHHHHH
T ss_pred             CccCCEEEEEECCEE----EEEEeCCCCHHHHHHHHHHHh
Confidence            899999999999964    566789999999999998763

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.59  E-value=9.2e-16  Score=141.10  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=91.9

Q ss_pred             ceEEEecCCCCCcccc------------CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHH
Q 006171          136 HAFNVVTSEDFPSIFH------------DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLA  203 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~------------~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc  203 (658)
                      ..|..||.++|.+.+.            ++++++|.||++||++|+++.|.|+++++.+++.+.++.|||++++   .+|
T Consensus         9 ~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~   85 (136)
T 2l5l_A            9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ---ELA   85 (136)
T ss_dssp             TSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHH
T ss_pred             CceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCH---HHH
Confidence            4678999999998873            4689999999999999999999999999999887899999999554   599


Q ss_pred             hhCCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHhhc
Q 006171          204 ERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (658)
Q Consensus       204 ~k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~  254 (658)
                      ++++      |.++||+++| ++|..     ..|.|.++.+.|.+|+.+...
T Consensus        86 ~~~~------v~~~Pt~~~~~~~G~~-----~~~~G~~~~~~l~~~l~~~~~  126 (136)
T 2l5l_A           86 GAFG------IRSIPSILFIPMEGKP-----EMAQGAMPKASFKKAIDEFLL  126 (136)
T ss_dssp             HHTT------CCSSCEEEEECSSSCC-----EEEESCCCHHHHHHHHHHHHT
T ss_pred             HHcC------CCCCCEEEEECCCCcE-----EEEeCCCCHHHHHHHHHHHhh
Confidence            9999      8899999999 66643     478999999999999988743

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.58  E-value=4e-16  Score=136.15  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=91.6

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .|..||.++|+..+.++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||++++   .+|++++      |.+
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~~   72 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP---KTAMRYR------VMS   72 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCH---hHHHhCC------CCc
Confidence            3688999999977788899999999999999999999999999999877899999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.|..+.+.|.+|+.+.
T Consensus        73 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           73 IPTVILFKDGQP----VEVLVGAQPKRNYQAKIEKH  104 (109)
T ss_dssp             SSEEEEEETTEE----EEEEESCCCHHHHHHHHHTT
T ss_pred             CCEEEEEeCCcE----eeeEeCCCCHHHHHHHHHHH
Confidence            999999977753    45689999999999999876

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.58  E-value=1.3e-13  Score=147.23  Aligned_cols=310  Identities=14%  Similarity=0.204  Sum_probs=204.1

Q ss_pred             eEEEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .+..|++ +++++++..+++++|-||.+-+..+   ...|.++|+.+ ....|+.++-.      .+|++++      |+
T Consensus        18 ~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~---~~~f~~~A~~~-~~~~F~~t~~~------~v~~~~~------v~   81 (361)
T 3uem_A           18 FATTLPDGAAAESLVESSEVAVIGFFKDVESDS---AKQFLQAAEAI-DDIPFGITSNS------DVFSKYQ------LD   81 (361)
T ss_dssp             SSEECCSHHHHHHHHHTSSEEEEEECSCTTSHH---HHHHHHHHHHC-SSSCEEEECCH------HHHHHTT------CS
T ss_pred             cceecCCHHHHHHHHhcCCcEEEEEEcCCCchH---HHHHHHHHhcC-CCceEEEECcH------HHHHHhC------CC
Confidence            3466644 7788888888999999998766544   57999999988 44567654432      4899998      77


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEe-CCCC---C
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFS-KTGE---R  291 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~-~~~~---~  291 (658)
                      . |+|++|+....   ....|+|..+.++|.+|+...  ..|.+..++.++ ...+....  .++.+++|. ..+.   .
T Consensus        82 ~-~~i~lfk~f~~---~~~~~~g~~~~~~i~~fi~~~--~~p~v~~~~~~~-~~~~~~~~--~~~~~v~F~~~~~~~~~~  152 (361)
T 3uem_A           82 K-DGVVLFKKFDE---GRNNFEGEVTKENLLDFIKHN--QLPLVIEFTEQT-APKIFGGE--IKTHILLFLPKSVSDYDG  152 (361)
T ss_dssp             S-SEEEEEESSTT---SEEECCSCCCHHHHHHHHHHH--SSCSEEECSTTT-HHHHHSCS--CCEEEEEECCSSSSSHHH
T ss_pred             C-CeEEEEEecCC---CccccCCcCCHHHHHHHHHHc--CCCcceecCccc-HHHHhcCC--CCcEEEEEEeCCchhHHH
Confidence            7 99999986322   247899999999999999987  467666666655 34444322  234455554 3221   2


Q ss_pred             CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCC--CCEEEEEeCCCCCeeeec---CCCChHHHHHHHHhhccC
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYY---GSFNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~--~Ptlvlfk~~~~~p~~y~---g~~~~~~L~~fi~~~~~~  366 (658)
                      ..+.++.+|..|++.+.|+.+.....+...+++.|||+.  +|+++++..++ .+..|.   |.++.+.|.+|++...-.
T Consensus       153 ~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~l~g  231 (361)
T 3uem_A          153 KLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRFLEG  231 (361)
T ss_dssp             HHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHHhcC
Confidence            346677899999988888888644223578999999987  99999998744 233464   788999999999875332


Q ss_pred             C------------------CccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhcccc
Q 006171          367 E------------------LPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDD  427 (658)
Q Consensus       367 ~------------------vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~  427 (658)
                      .                  +..++..+..+....      .++     .++|.+.. --.....+...++++++      
T Consensus       232 ~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~------~~k-----~~lv~f~a~wC~~C~~~~p~~~~la~------  294 (361)
T 3uem_A          232 KIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFD------EKK-----NVFVEFYAPWCGHCKQLAPIWDKLGE------  294 (361)
T ss_dssp             CSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTC------TTC-----EEEEEEECTTCHHHHHHHHHHHHHHH------
T ss_pred             CCcccccCCCCCcccccCCcEEeecCchhhhccc------CCC-----cEEEEEecCcCHhHHHHHHHHHHHHH------
Confidence            1                  223444443332211      122     44444543 33455677777877777      


Q ss_pred             ccccccccCCchHHHHhcCC-CcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceec
Q 006171          428 ESNAADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIE  506 (658)
Q Consensus       428 ~~~~~~~~~~~~~~A~~~~~-~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~  506 (658)
                                      .+++ ..+.|++||.+.+.  +.              +..+...|.++++    +....     
T Consensus       295 ----------------~~~~~~~v~~~~vd~~~~~--~~--------------~~~v~~~Pt~~~~----~~~~~-----  333 (361)
T 3uem_A          295 ----------------TYKDHENIVIAKMDSTANE--VE--------------AVKVHSFPTLKFF----PASAD-----  333 (361)
T ss_dssp             ----------------HTTTCSSEEEEEEETTTCB--CS--------------SCCCCSSSEEEEE----CSSSS-----
T ss_pred             ----------------HhccCCcEEEEEEECCccc--hh--------------hcCCcccCeEEEE----ECCCC-----
Confidence                            4433 36999999997653  11              1245567999987    33210     


Q ss_pred             cccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          507 RKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       507 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                                         .....|.|.++.++|.+||.+--+
T Consensus       334 -------------------~~~~~~~G~~~~~~l~~~l~~~~~  357 (361)
T 3uem_A          334 -------------------RTVIDYNGERTLDGFKKFLESGGQ  357 (361)
T ss_dssp             -------------------CCCEECCSCSSHHHHHHHHTTTSC
T ss_pred             -------------------cceeEecCCCCHHHHHHHHHhcCC
Confidence                               001235677777889888876544

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.58  E-value=7.4e-16  Score=139.69  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=84.8

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCC--------------CCCCChHHHHHHHHHhhcccceeeeecccchhhhH
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSY--------------LCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH  201 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~--------------~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~  201 (658)
                      .|..||.++|++.+ +++++++|.|||+||+              +|+++.|.|+++++.+++.+.+++|||++++   .
T Consensus         4 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~---~   80 (123)
T 1oaz_A            4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---G   80 (123)
T ss_dssp             SCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCT---T
T ss_pred             ccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCH---H
Confidence            46889999998766 7889999999999999              9999999999999999877899999999654   4


Q ss_pred             HHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       202 Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +|++++      |+++||+++|++|..    ...|.|.++.++|.+|+.+.
T Consensus        81 l~~~~~------v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           81 TAPKYG------IRGIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  121 (123)
T ss_dssp             TGGGGT------CCBSSEEEEEESSSE----EEEEESCCCHHHHHHHHTTT
T ss_pred             HHHHcC------CCccCEEEEEECCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            889998      889999999987753    45789999999999998764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.58  E-value=9.4e-16  Score=141.30  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             ceEEEecCCCCCcccc------------CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHH
Q 006171          136 HAFNVVTSEDFPSIFH------------DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLA  203 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~------------~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc  203 (658)
                      ..|..||.++|+..+.            .+++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|
T Consensus        22 ~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~   98 (141)
T 3hxs_A           22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP---ELA   98 (141)
T ss_dssp             -CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHH
T ss_pred             CCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCH---HHH
Confidence            3578899999988883            4789999999999999999999999999999988899999999554   599


Q ss_pred             hhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          204 ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       204 ~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++++      |.++||+++|..++.    ...|.|.++.+.|.+|+.+.
T Consensus        99 ~~~~------v~~~Pt~~~~~~~g~----~~~~~G~~~~~~l~~~l~~~  137 (141)
T 3hxs_A           99 RDFG------IQSIPTIWFVPMKGE----PQVNMGALSKEQLKGYIDKV  137 (141)
T ss_dssp             HHTT------CCSSSEEEEECSSSC----CEEEESCCCHHHHHHHHHHT
T ss_pred             HHcC------CCCcCEEEEEeCCCC----EEEEeCCCCHHHHHHHHHHH
Confidence            9999      889999999955543    25889999999999999876

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.58  E-value=5.9e-16  Score=146.29  Aligned_cols=103  Identities=17%  Similarity=0.291  Sum_probs=92.8

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .+..++.++|++.+.++++++|.||++||++|+.+.|.|+++++++.+.+.+++|||++++   .+|++++      |++
T Consensus        48 ~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~l~~~~~------i~~  118 (155)
T 2ppt_A           48 KVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHP---AVAGRHR------IQG  118 (155)
T ss_dssp             SEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTST---HHHHHTT------CCS
T ss_pred             CCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccH---HHHHHcC------CCc
Confidence            3688999999998877899999999999999999999999999999888899999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.|.++.+.|.+|+.+.
T Consensus       119 ~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  150 (155)
T 2ppt_A          119 IPAFILFHKGRE----LARAAGARPASELVGFVRGK  150 (155)
T ss_dssp             SSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHH
Confidence            999999987753    45689999999999999887

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.58  E-value=3.6e-16  Score=144.63  Aligned_cols=103  Identities=9%  Similarity=0.092  Sum_probs=93.2

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccC--CCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapw--C~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      +..+|+++|++.|.++.++||.|||+|  |++|+.++|..+++|+++.+. ++|++||.++++   .|+.+|+      |
T Consensus        19 ~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~---~lA~~yg------V   89 (140)
T 2qgv_A           19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSE---AIGDRFG------A   89 (140)
T ss_dssp             CEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHH---HHHHHHT------C
T ss_pred             CccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCH---HHHHHcC------C
Confidence            367999999999988889999999999  999999999999999999998 999999999554   5999999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      +++|||++|++|..    .....|.++.+.|.+++.+.+
T Consensus        90 ~sIPTlilFk~G~~----v~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           90 FRFPATLVFTGGNY----RGVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             CSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHHH
T ss_pred             ccCCEEEEEECCEE----EEEEecCCCHHHHHHHHHHHh
Confidence            99999999999964    466789999999999998874

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.57  E-value=6.5e-16  Score=135.02  Aligned_cols=102  Identities=15%  Similarity=0.221  Sum_probs=90.4

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |..+|.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||++++   .+|++++      |.+
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~~   73 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP---NVASEYG------IRS   73 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHHT------CCS
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCC------CCc
Confidence            5789999999877 67899999999999999999999999999999877899999999554   5899998      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|++|..    ...+.|..+.+.|.+++.+.
T Consensus        74 ~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  105 (107)
T 1dby_A           74 IPTIMVFKGGKK----CETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             SCEEEEESSSSE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            999999987753    45688999999999998775

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.57  E-value=2.3e-16  Score=141.05  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=61.1

Q ss_pred             ccCcccccCccCCCCH--HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           36 PPSHYDALGIKPYSSV--EQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~--~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ..++|+||||+++|+.  ++||+|||+|+++||||+++. .++|++|++||++|+||.+|+.||.+|..
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~~~   74 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhcccc
Confidence            3589999999999999  999999999999999999864 67899999999999999999999998753

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.57  E-value=1.9e-15  Score=153.64  Aligned_cols=105  Identities=12%  Similarity=0.110  Sum_probs=89.9

Q ss_pred             ceEEEecCCCCCccccCCCcEEEEEe--ccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccc--hhhhHHHhhCCC
Q 006171          136 HAFNVVTSEDFPSIFHDSKPWLIQVY--SDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDI--RLATHLAERKPI  208 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~~~~~~lV~FY--apwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~--~~~~~Lc~k~~i  208 (658)
                      +.|+.||..||+++++++++|||.||  ||||+    ++|.|+++|+.+.+   .+.|++|||++.  .....||++|+ 
T Consensus        16 ~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~-   90 (248)
T 2c0g_A           16 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK-   90 (248)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT-
T ss_pred             CCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC-
Confidence            34789999999997788899999999  99999    99999999999965   569999999961  11346999999 


Q ss_pred             Cccccee--eeeEEEEcCCCCCCCCCcccc--cCCCCHhHHHHHHHHhh
Q 006171          209 GQIFFRR--GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATAI  253 (658)
Q Consensus       209 ~k~f~V~--~yPTl~~f~~g~~~~~~~~~Y--~G~rs~~~Lv~fv~k~v  253 (658)
                           |+  +||||++|+ |..  ..+..|  .|.++.++|++|+.+.+
T Consensus        91 -----V~~~~~PTl~~F~-G~~--~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           91 -----VDDKNFPSIFLFK-GNA--DEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             -----CCTTSCCEEEEES-SSS--SSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             -----CCcCCCCeEEEEe-CCc--CcceeecccCCCCHHHHHHHHHHhh
Confidence                 99  999999999 752  135789  99999999999999873

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.57  E-value=5.6e-16  Score=138.52  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      +.|..++.++|...+ .++++++|.||++||++|+.+.|.|+++++.+++.+.++.|||++++   .+|++++      |
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------i   82 (121)
T 2i1u_A           12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQ------V   82 (121)
T ss_dssp             CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTT------C
T ss_pred             ccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCH---HHHHhcC------C
Confidence            357889999998776 77899999999999999999999999999999877899999999554   5999999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        83 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           83 VSIPTLILFKDGQP----VKRIVGAKGKAALLRELSDV  116 (121)
T ss_dssp             CSSSEEEEEETTEE----EEEEESCCCHHHHHHHTCSC
T ss_pred             CcCCEEEEEECCEE----EEEecCCCCHHHHHHHHHHH
Confidence            89999999987753    46789999999999998766

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.57  E-value=1.1e-15  Score=132.79  Aligned_cols=102  Identities=13%  Similarity=0.207  Sum_probs=90.1

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |..+|.++|+..+ .++++++|.||++||++|+.+.|.++++++.+.+.+.+..|||++++   .+|++++      |.+
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~~   72 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP---GIATQYN------IRS   72 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchH---HHHHhCC------CCc
Confidence            5678999999877 67899999999999999999999999999999887899999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|++|..    ...+.|..+.+.|.+++.+.
T Consensus        73 ~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           73 IPTVLFFKNGER----KESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             SSEEEEEETTEE----EEEEEECCCHHHHHHHHHHH
T ss_pred             ccEEEEEeCCeE----EEEEecCCCHHHHHHHHHhh
Confidence            999999987753    45688999999999998765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.56  E-value=5.1e-16  Score=138.92  Aligned_cols=99  Identities=11%  Similarity=0.172  Sum_probs=87.6

Q ss_pred             EEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          139 NVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       139 ~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      ...|.++|++.+.  .+++++|.|||+||++|+++.|.|+++++++.+ +.++.|||++++   .+|++++      |.+
T Consensus        15 ~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~---~l~~~~~------v~~   84 (116)
T 3qfa_C           15 QIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQ---DVASECE------VKS   84 (116)
T ss_dssp             CCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTH---HHHHHTT------CCS
T ss_pred             CCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCH---HHHHHcC------Ccc
Confidence            4577889999886  899999999999999999999999999999877 899999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.|. +.+.|.+++.+.
T Consensus        85 ~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           85 MPTFQFFKKGQK----VGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             SSEEEEESSSSE----EEEEESC-CHHHHHHHHHHH
T ss_pred             ccEEEEEeCCeE----EEEEcCC-CHHHHHHHHHHh
Confidence            999999988754    4668898 999999999765

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.56  E-value=1e-15  Score=137.38  Aligned_cols=103  Identities=17%  Similarity=0.283  Sum_probs=91.6

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..+|.++|++.+ +++++++|.||++||++|+++.|.|+++++.+.+.+.++.|||+++.   .+|++++      |.
T Consensus        14 ~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~------v~   84 (119)
T 1w4v_A           14 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT---DLAIEYE------VS   84 (119)
T ss_dssp             EEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTH---HHHHHTT------CC
T ss_pred             EEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCH---HHHHHcC------CC
Confidence            57899999999877 67899999999999999999999999999999877899999999554   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        85 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  117 (119)
T 1w4v_A           85 AVPTVLAMKNGDV----VDKFVGIKDEDQLEAFLKKL  117 (119)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             cccEEEEEeCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence            9999999977753    45788999999999999775

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.56  E-value=3.1e-14  Score=144.56  Aligned_cols=186  Identities=11%  Similarity=0.096  Sum_probs=131.4

Q ss_pred             CCCcEEEEEeccC--CCCCCCChHHHHHHHHHh---hcc--cceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171          152 DSKPWLIQVYSDG--SYLCGQFSGAWKTIAALL---EGI--ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (658)
Q Consensus       152 ~~~~~lV~FYapw--C~~Ck~l~P~w~~~A~~l---~g~--~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~  224 (658)
                      -..+++|.||++|  |++|+.+.|.++++|+..   +|.  +.|+.+||++++   .+|++|+      |+++||+++| 
T Consensus        24 ~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~---~~~~~~g------v~~~Pt~~i~-   93 (243)
T 2hls_A           24 MVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDS---DKFSEFK------VERVPTVAFL-   93 (243)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTH---HHHHHTT------CCSSSEEEET-
T ss_pred             CCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCH---HHHHhcC------CCcCCEEEEE-
Confidence            4579999999999  999999999999999873   443  789999999554   5999999      8899999999 


Q ss_pred             CCCCCCCCcccccCCCCHhHHHHHHHHhhc-cCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCC---CCCCcHHHHHH
Q 006171          225 PGCKSSDCMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQI  299 (658)
Q Consensus       225 ~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~---~~~~~~~~~~~  299 (658)
                      +| .     ..|.|.++.+.+..|+...+. +.+... ++. +..+. +... ..++.++ |+...   |....|.+..+
T Consensus        94 ~g-~-----~~~~G~~~~~~l~~fv~~~l~~~~~~~~-l~~-~~~~~-~~~~-~~~~~vv~F~a~wC~~C~~~~p~l~~l  163 (243)
T 2hls_A           94 GG-E-----VRWTGIPAGEEIRALVEVIMRLSEDESG-LED-ATKEA-LKSL-KGRVHIETIITPSCPYCPYAVLLAHMF  163 (243)
T ss_dssp             TT-T-----EEEESCCCTTHHHHHHHHHHHHHTTCCC-CCH-HHHHH-HHHC-CSCEEEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CC-c-----eeEcCCCcHHHHHHHHHHHHhccCCCCC-CCH-HHHHH-HHHc-CCCcEEEEEECCCCCCcHHHHHHHHHH
Confidence            55 3     789999988999999877532 122111 221 21222 2222 2345455 44432   22245666667


Q ss_pred             HHhhc----cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          300 SRNYW----AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       300 A~~~~----~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      +..+.    ..+.++.+...  ..++++++|+|.++||+++  ++  + ..|.|..+.+.|.+++....
T Consensus       164 a~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~V~~vPt~~i--~G--~-~~~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          164 AYEAWKQGNPVILSEAVEAY--ENPDIADKYGVMSVPSIAI--NG--Y-LVFVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             HHHHHHTTCCCEEEEEEETT--TCHHHHHHTTCCSSSEEEE--TT--E-EEEESCCCHHHHHHHHHHHH
T ss_pred             HHHcccccCCcEEEEEEECc--cCHHHHHHcCCeeeCeEEE--CC--E-EEEeCCCCHHHHHHHHHHHh
Confidence            77763    34566666432  2467999999999999988  33  2 34899999999999998754

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.6e-15  Score=130.34  Aligned_cols=60  Identities=23%  Similarity=0.333  Sum_probs=56.4

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRN   95 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~   95 (658)
                      ..|||+||||+++|+.++||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            579999999999999999999999999999999985  678899999999999999999875

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=6.5e-16  Score=142.16  Aligned_cols=103  Identities=16%  Similarity=0.292  Sum_probs=87.8

Q ss_pred             eEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-ccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..+|.++|+..+.  .+++++|.|||+||++|+.+.|.|+++++++++ .+.++.|||++++   .+|++++      
T Consensus         8 ~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~~------   78 (137)
T 2dj0_A            8 YIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT---DVSTRYK------   78 (137)
T ss_dssp             CCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCH---HHHHHTT------
T ss_pred             eEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCH---HHHHHcc------
Confidence            478899999999994  345999999999999999999999999999986 5799999999554   5999998      


Q ss_pred             ee------eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RR------GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~------~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |.      ++||+++|.+|..    ...+.|.++.+.|.+|+.+.
T Consensus        79 v~~~~~~~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           79 VSTSPLTKQLPTLILFQGGKE----AMRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             CCCCSSSSCSSEEEEESSSSE----EEEESCBCSSSCBCCCCCCH
T ss_pred             CcccCCcCCCCEEEEEECCEE----EEEecCcCchHHHHHHHhcc
Confidence            77      9999999988854    45688999888888776443

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.55  E-value=3.3e-15  Score=149.87  Aligned_cols=102  Identities=21%  Similarity=0.304  Sum_probs=92.2

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .+..++.++|+..+..+++++|.|||+||++|+.+.|.|+++|+.+.+.   +.++.|||++++   .+|++++      
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------  201 (241)
T 3idv_A          131 VTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET---DLAKRFD------  201 (241)
T ss_dssp             SSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCH---HHHHHTT------
T ss_pred             cceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCH---HHHHHcC------
Confidence            4578999999999988889999999999999999999999999999765   699999999554   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|.+|..     ..|.|.++.++|++|+.+.
T Consensus       202 v~~~Pt~~~~~~g~~-----~~~~g~~~~~~l~~~l~~~  235 (241)
T 3idv_A          202 VSGYPTLKIFRKGRP-----YDYNGPREKYGIVDYMIEQ  235 (241)
T ss_dssp             CCSSSEEEEEETTEE-----EECCSCCSHHHHHHHHHHH
T ss_pred             CcccCEEEEEECCeE-----EEecCCCCHHHHHHHHHhh
Confidence            889999999998854     5699999999999999987

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.55  E-value=1.4e-15  Score=127.32  Aligned_cols=64  Identities=11%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             cCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        37 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      .++|+||||+++  ++.++||+|||+|+++||||++ ++.++|++|++||++|+|+.+|.. +.||..
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~-~~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~   76 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHALMQELNSLWGTFKTEVYNLR-MNLGGT   76 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CCHHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CCHHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence            579999999999  9999999999999999999997 467899999999999999999988 557754

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.55  E-value=4.9e-16  Score=148.34  Aligned_cols=65  Identities=15%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             ccCcccccCccCCCC--HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCc
Q 006171           36 PPSHYDALGIKPYSS--VEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGI  101 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~--~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~  101 (658)
                      ..|+|+||||+++|+  .++||+|||+|++++|||+++. .++|++|++||++|+||.+|+.||++|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            469999999999999  6999999999999999999864 5789999999999999999999999995

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.54  E-value=6.7e-15  Score=137.24  Aligned_cols=102  Identities=11%  Similarity=0.102  Sum_probs=76.9

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccC--CCCCCCChHHHHHHHHHhhcccc--eeeeecccchhhhHHHhhCCCCcccc
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIAN--TGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapw--C~~Ck~l~P~w~~~A~~l~g~~~--vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      +..+|.++|++.+.+...++|.||++|  |++|+.++|.|+++++++ +.+.  +++||++++   ..+|++|+      
T Consensus        19 ~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~---~~la~~~~------   88 (142)
T 2es7_A           19 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQS---EAIGDRFN------   88 (142)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHH---HHHHHTTT------
T ss_pred             CcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCC---HHHHHhcC------
Confidence            478999999999977778999999987  999999999999999999 7778  999999944   45999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      |+++||+++|++|..    ...|.|.++.+.|.+|+.+.+
T Consensus        89 V~~iPT~~~fk~G~~----v~~~~G~~~~~~l~~~i~~~l  124 (142)
T 2es7_A           89 VRRFPATLVFTDGKL----RGALSGIHPWAELLTLMRSIV  124 (142)
T ss_dssp             CCSSSEEEEESCC--------CEESCCCHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEeCCEE----EEEEeCCCCHHHHHHHHHHHh
Confidence            889999999988864    467899999999999998874

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.54  E-value=4.1e-15  Score=131.19  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             ceEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-cchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..||.++|++.+.  .+++++|.||++||++|+++.|.|+++++.+.+ +.+..|||+ ++.   .+|++++     
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~---~~~~~~~-----   75 (111)
T 2pu9_C            5 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENK---TLAKELG-----   75 (111)
T ss_dssp             TSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTH---HHHHHHC-----
T ss_pred             CccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchH---HHHHHcC-----
Confidence            3588999999999985  689999999999999999999999999999875 789999998 443   4899998     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       |+++||+++|++|..    ...+.|.. .+.|.+++.+.
T Consensus        76 -v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  109 (111)
T 2pu9_C           76 -IRVVPTFKILKENSV----VGEVTGAK-YDKLLEAIQAA  109 (111)
T ss_dssp             -CSBSSEEEEESSSSE----EEEEESSC-HHHHHHHHHHH
T ss_pred             -CCeeeEEEEEeCCcE----EEEEcCCC-HHHHHHHHHHh
Confidence             889999999988854    35678875 88999998765

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.54  E-value=2.9e-15  Score=149.80  Aligned_cols=105  Identities=16%  Similarity=0.260  Sum_probs=93.7

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      +.+..||.++|+..+ +++++++|.|||+||++|+.+.|.|+++++.+++.+.++.|||++++   .+|++++      |
T Consensus        12 ~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~------v   82 (222)
T 3dxb_A           12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYG------I   82 (222)
T ss_dssp             CCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCT---TTGGGGT------C
T ss_pred             CCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCH---HHHHHcC------C
Confidence            356889999999865 78999999999999999999999999999999988899999999654   4888988      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      .++||+++|++|..    ...|.|.++.+.|.+|+.+.+
T Consensus        83 ~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~l  117 (222)
T 3dxb_A           83 RGIPTLLLFKNGEV----AATKVGALSKGQLKEFLDANL  117 (222)
T ss_dssp             CSBSEEEEEETTEE----EEEEESCCCHHHHHHHHHHHS
T ss_pred             CcCCEEEEEECCeE----EEEeccccChHHHHHHHHhhc
Confidence            89999999998754    457899999999999999883

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.54  E-value=1.8e-15  Score=143.32  Aligned_cols=68  Identities=22%  Similarity=0.456  Sum_probs=61.8

Q ss_pred             CccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCh---------HHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS---------TADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        35 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~---------~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ...|||+||||+++|+.++||+|||+|+++||||+++..         .++|.+|++||++|+||.+|+.||..+..
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            467999999999999999999999999999999998632         47899999999999999999999987643

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.54  E-value=4.1e-15  Score=135.16  Aligned_cols=96  Identities=11%  Similarity=0.122  Sum_probs=82.7

Q ss_pred             CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       143 ~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      .+.++....++++++|.|||+||++|+++.|.|+++++.+++.+.++.|||++++   .+|++++      |+++||+++
T Consensus        32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~------v~~~Pt~~~  102 (128)
T 3ul3_B           32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE---SLARKFS------VKSLPTIIL  102 (128)
T ss_dssp             CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH---HHHHHTT------CCSSSEEEE
T ss_pred             ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcC------CCCcCEEEE
Confidence            3334444478999999999999999999999999999999887899999999554   5999999      889999999


Q ss_pred             cCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          223 FPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       223 f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      |.+|..    ...+.|.++.++|.+|+.+
T Consensus       103 ~~~G~~----~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          103 LKNKTM----LARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EETTEE----EEEESSCCCHHHHHHHHTT
T ss_pred             EECCEE----EEEecCCCCHHHHHHHHHh
Confidence            987753    5678999999999999864

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.53  E-value=5.6e-15  Score=149.64  Aligned_cols=104  Identities=17%  Similarity=0.200  Sum_probs=88.7

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEec--cCCCCCCCChHHHHHHHHHhhc--ccceeeeeccc--chhhhHHHhhCCCCc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYS--DGSYLCGQFSGAWKTIAALLEG--IANTGMVELGD--IRLATHLAERKPIGQ  210 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYa--pwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e--~~~~~~Lc~k~~i~k  210 (658)
                      .|+.||..||++++.++++|||.|||  |||+    ++|.|+++|+.+.+  .+.|++|||++  -.....||++++   
T Consensus         6 ~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~---   78 (240)
T 2qc7_A            6 GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK---   78 (240)
T ss_dssp             TCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT---
T ss_pred             CceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC---
Confidence            46899999999988888999999999  9999    99999999999974  46999999542  012345999999   


Q ss_pred             cccee--eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~--~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |+  +||||++|++|..  ..+..|.|.++.++|++|+.+.
T Consensus        79 ---V~~~~~PTl~~f~~G~~--~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           79 ---LDKESYPVFYLFRDGDF--ENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             ---CCGGGCSEEEEEETTCS--SCCEECCSCSCHHHHHHHHHHT
T ss_pred             ---CCCCCCCEEEEEeCCCc--CcceeecCCCCHHHHHHHHHHh
Confidence               99  9999999999861  1257899999999999999987

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.53  E-value=2.9e-15  Score=136.23  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=88.2

Q ss_pred             EEEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |..|+. ++|++.+.++++++|.|||+||++|+++.|.|+++++.+. .+.++.|||++++   .+|++++      |.+
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~---~l~~~~~------v~~   90 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNS---EIVSKCR------VLQ   90 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCH---HHHHHcC------CCc
Confidence            688999 9999999888999999999999999999999999999984 4799999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.| .+.+.|.+++.+.
T Consensus        91 ~Pt~~i~~~G~~----~~~~~G-~~~~~l~~~l~~~  121 (125)
T 1r26_A           91 LPTFIIARSGKM----LGHVIG-ANPGMLRQKLRDI  121 (125)
T ss_dssp             SSEEEEEETTEE----EEEEES-SCHHHHHHHHHHH
T ss_pred             ccEEEEEeCCeE----EEEEeC-CCHHHHHHHHHHH
Confidence            999999988753    456788 6889999999876

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.52  E-value=5.9e-15  Score=136.14  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             ceEEEecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          136 HAFNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      ..|..++.++|+..+. ++. ++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++   .+|++++      |
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~------v  102 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP---GLAARYG------V  102 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH---HHHHHTT------C
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCH---HHHHHCC------C
Confidence            3578899999999984 445 999999999999999999999999999877899999999554   5999999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .++||+++|.+|..    ...|.|.++.+.|.+|+.+.
T Consensus       103 ~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~  136 (140)
T 1v98_A          103 RSVPTLVLFRRGAP----VATWVGASPRRVLEERLRPY  136 (140)
T ss_dssp             CSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CccCEEEEEeCCcE----EEEEeCCCCHHHHHHHHHHH
Confidence            89999999987753    45689999999999999876

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.52  E-value=5.2e-15  Score=129.64  Aligned_cols=100  Identities=13%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             EEEe-cCCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVV-TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~L-t~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |..+ +.++|++.+  .++++++|.||++||++|+++.|.|+++++.+ +.+.++.|||++++   .+|++++      |
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~---~~~~~~~------v   72 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQ---GTAATNN------I   72 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSH---HHHHHTT------C
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECccCH---HHHHhcC------C
Confidence            4556 568899998  47899999999999999999999999999998 45799999999554   5999999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +++||+++|++|..    ...|.|.. .++|.+|+.+.
T Consensus        73 ~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  105 (107)
T 1gh2_A           73 SATPTFQFFRNKVR----IDQYQGAD-AVGLEEKIKQH  105 (107)
T ss_dssp             CSSSEEEEEETTEE----EEEEESSC-HHHHHHHHHHH
T ss_pred             CcccEEEEEECCeE----EEEEeCCC-HHHHHHHHHHh
Confidence            89999999988753    45678854 56699998765

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.52  E-value=3.3e-15  Score=129.96  Aligned_cols=101  Identities=14%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             EEEecC-CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVTS-EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~-~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |..+++ ++|+..+.  ++++++|.||++||++|+++.|.++++++.+++.+.+..|||++++   .+|++++      |
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v   72 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE---DIAMEYN------I   72 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH---HHHHHTT------C
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchH---HHHHHcC------C
Confidence            567888 88998885  7899999999999999999999999999999777799999999554   5999999      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .++||+++|++|..    ...|.| .+.+.|.+|+.+.
T Consensus        73 ~~~Pt~~~~~~G~~----~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           73 SSMPTFVFLKNGVK----VEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             CSSSEEEEEETTEE----EEEEES-CCHHHHHHHHHHT
T ss_pred             CcccEEEEEcCCcE----EEEEcC-CCHHHHHHHHHHh
Confidence            89999999988753    456788 7889999998764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.51  E-value=6.1e-15  Score=130.14  Aligned_cols=101  Identities=9%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             EEEecC-CCCCccccC---CCcEEEEEeccCCCCCCCChHHHHHHHHHhh-cccceeeeecccchhhhHHHhhCCCCccc
Q 006171          138 FNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       138 V~~Lt~-~nF~~~v~~---~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~-g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      |..|+. ++|++.+.+   +++++|.||++||++|+.+.|.|+++++.++ +.+.+..|||++++   .+|++++     
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~-----   73 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENS---EISELFE-----   73 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCH---HHHHHTT-----
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCH---HHHHHcC-----
Confidence            577888 899998865   8999999999999999999999999999863 34699999999554   5999999     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       |.++||+++|.+|..    ...+.|.. .++|.+++.+.
T Consensus        74 -v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  107 (112)
T 3d6i_A           74 -ISAVPYFIIIHKGTI----LKELSGAD-PKEYVSLLEDC  107 (112)
T ss_dssp             -CCSSSEEEEEETTEE----EEEECSCC-HHHHHHHHHHH
T ss_pred             -CCcccEEEEEECCEE----EEEecCCC-HHHHHHHHHHH
Confidence             889999999987753    45678875 55699998776

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.51  E-value=3.4e-15  Score=131.49  Aligned_cols=102  Identities=16%  Similarity=0.245  Sum_probs=87.9

Q ss_pred             eEEEe-cCCCCCccccC----CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcc
Q 006171          137 AFNVV-TSEDFPSIFHD----SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       137 ~V~~L-t~~nF~~~v~~----~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      .|..+ +.++|++.+..    +++++|.||++||++|+.+.|.|+++++.+.+.+.+..|||++++   .+|++++    
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~----   75 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA---AVAEAAG----   75 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH---HHHHHHT----
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchH---HHHHHcC----
Confidence            36777 45889998853    899999999999999999999999999999877799999999544   5999998    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||+++|++|..    ...|.|. +.+.|.+|+.+.
T Consensus        76 --v~~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  109 (112)
T 1ep7_A           76 --ITAMPTFHVYKDGVK----ADDLVGA-SQDKLKALVAKH  109 (112)
T ss_dssp             --CCBSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             --CCcccEEEEEECCeE----EEEEcCC-CHHHHHHHHHHH
Confidence              889999999988753    4567898 899999999876

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.51  E-value=3.1e-15  Score=140.29  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=86.8

Q ss_pred             EEEecC-CCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVVTS-EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~-~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |..|+. ++|++.|  .++++++|.|||+||++|+.++|.++++|+++++.+.|++||.++++.   ++++|+      |
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e---~a~~y~------V   93 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPD---FNTMYE------L   93 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT---TTTTTT------C
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHH---HHHHcC------C
Confidence            445655 7899888  378899999999999999999999999999998888999999997664   889998      8


Q ss_pred             eeeeEEEEcCCCCCCCCCc--c-------cccCCCC-HhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCM--T-------RFEGELS-VDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~--~-------~Y~G~rs-~~~Lv~fv~k~  252 (658)
                      ++.||+++|.+|..    .  .       ...|... .+.|.+++.+.
T Consensus        94 ~siPT~~fFk~G~~----v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~  137 (160)
T 2av4_A           94 YDPVSVMFFYRNKH----MMIDLGTGNNNKINWPMNNKQEFIDIVETI  137 (160)
T ss_dssp             CSSEEEEEEETTEE----EEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCEE----EEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence            89999999998864    2  1       4678776 88899988765

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.51  E-value=1.9e-13  Score=137.13  Aligned_cols=201  Identities=7%  Similarity=0.035  Sum_probs=147.7

Q ss_pred             EEEe-cCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVV-TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~L-t~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      +..| |.++|++.+.++++++|.||++|   |..+.++|.++|+.+ ....+|.+.-      ..+|++++      |++
T Consensus        11 ~~~l~s~~~~~~~l~~~~v~vVgff~~~---~~~~~~~f~~~A~~l-~~~~F~~t~~------~~v~~~~~------v~~   74 (227)
T 4f9z_D           11 PTWLTDVPAAMEFIAATEVAVIGFFQDL---EIPAVPILHSMVQKF-PGVSFGISTD------SEVLTHYN------ITG   74 (227)
T ss_dssp             CEECCSHHHHHHHHHTSSEEEEEECSCS---CSTHHHHHHHHTTTC-TTSEEEEECC------HHHHHHTT------CCS
T ss_pred             CeeeCCHHHHHHHHhcCCeEEEEEecCC---CchhHHHHHHHHHhC-CCceEEEECC------HHHHHHcC------CCC
Confidence            4566 45889988888999999999998   568999999999999 4668877542      24889998      888


Q ss_pred             eeEEEEcCCCCCCCCCccccc----CCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCC-CC-
Q 006171          217 LPSLVAFPPGCKSSDCMTRFE----GELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT-GE-  290 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~----G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~-~~-  290 (658)
                       |+|++|++...   ....|.    |.++.++|.+|+...  .+|.+..++.++ ...+....  ....+++|.+. ++ 
T Consensus        75 -p~i~lfk~~~~---~~~~~~~~~~g~~~~~~l~~fi~~~--~~plv~e~t~~n-~~~~~~~~--~~~~~l~f~~~~~~~  145 (227)
T 4f9z_D           75 -NTICLFRLVDN---EQLNLEDEDIESIDATKLSRFIEIN--SLHMVTEYNPVT-VIGLFNSV--IQIHLLLIMNKASPE  145 (227)
T ss_dssp             -SEEEEEETTTT---EEEEECHHHHHTCCHHHHHHHHHHH--CCCSEEECCHHH-HHHHHHSS--CCEEEEEEECTTSTT
T ss_pred             -CeEEEEEecCc---ccccccccccCCCCHHHHHHHHHHh--CCCceeecCccc-HHHHhccC--CceEEEEEEcCCcch
Confidence             99999997542   246777    489999999999988  467776677666 44444322  23445566432 21 


Q ss_pred             C--CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCC--CCCEEEEEeCCCCCeeee-cCCCChHHHHHHHHhh
Q 006171          291 R--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY-YGSFNNSRLSEVMEQN  363 (658)
Q Consensus       291 ~--~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~--~~Ptlvlfk~~~~~p~~y-~g~~~~~~L~~fi~~~  363 (658)
                      +  ..+.++.+|..|++.+.|+++...+.....+.+.||+.  .+|+|+++...+.+...+ .+.++.+.|.+|++..
T Consensus       146 ~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~  223 (227)
T 4f9z_D          146 YEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGF  223 (227)
T ss_dssp             HHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHH
Confidence            1  23566779999999999999875433345678999998  699999998654432223 4788999999999763

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.50  E-value=4.3e-15  Score=131.23  Aligned_cols=99  Identities=15%  Similarity=0.281  Sum_probs=85.6

Q ss_pred             EEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeee
Q 006171          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (658)
Q Consensus       139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yP  218 (658)
                      ...+.++|+..+.++++++|.|||+||++|+++.|.|+++++++.+ +.+..|||++++   .+|++++      |+++|
T Consensus        10 ~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~---~l~~~~~------v~~~P   79 (109)
T 3f3q_A           10 QFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELG---DVAQKNE------VSAMP   79 (109)
T ss_dssp             ECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTT------CCSSS
T ss_pred             CCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCH---HHHHHcC------CCccC
Confidence            4466788999998899999999999999999999999999999865 799999999554   5999999      88999


Q ss_pred             EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++|.+|..    ...+.|. +.+.|.+++.+.
T Consensus        80 t~~~~~~G~~----~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           80 TLLLFKNGKE----VAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEEECCEE----EEEEeCC-CHHHHHHHHHhh
Confidence            9999997753    4667888 679999998764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.25  E-value=1.6e-15  Score=131.31  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=88.9

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |..||.++|++.+ .++++++|.||++||++|+++.|.++++++.+.+.+.+..|||+++.   .+|++++      |.+
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------v~~   73 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP---NTAAQYG------IRS   73 (106)
Confidence            5789999999877 77899999999999999999999999999999877899999999544   4888888      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ...|.|..+.+.|.+|+.+.
T Consensus        74 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           74 IPTLLLFKNGQV----VDRLVGAQPKEALKERIDKH  105 (106)
Confidence            999999977753    45788999999999988654

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.49  E-value=4.9e-15  Score=128.73  Aligned_cols=96  Identities=13%  Similarity=0.220  Sum_probs=83.7

Q ss_pred             cCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeE
Q 006171          142 TSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       142 t~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      +.++|++.+.  ++++++|.||++||++|+++.|.|+++++.+.+ +.+..|||++++   .+|++++      |+++||
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~---~~~~~~~------v~~~Pt   76 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQ---DVASESE------VKSMPT   76 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCH---HHHHHTT------CCBSSE
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhH---HHHHHcC------CCcCcE
Confidence            4567888885  789999999999999999999999999999876 899999999554   5999999      889999


Q ss_pred             EEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       220 l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +++|.+|..    ...|.|. +.+.|.+++.+.
T Consensus        77 ~~~~~~g~~----~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           77 FQFFKKGQK----VGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             EEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEECCeE----EEEEeCC-CHHHHHHHHHHh
Confidence            999988754    4568898 999999998765

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.49  E-value=1.2e-14  Score=130.85  Aligned_cols=102  Identities=14%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             ceEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-cchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..++.++|++.+.  ++++++|.||++||++|+++.|.++++++++.+ +.+..|||+ +++   .+|++++     
T Consensus        18 ~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~---~~~~~~~-----   88 (124)
T 1faa_A           18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENK---TLAKELG-----   88 (124)
T ss_dssp             TSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTH---HHHHHHC-----
T ss_pred             CceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchH---HHHHHcC-----
Confidence            3578999999999884  789999999999999999999999999998875 689999998 343   4899998     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       |+++||+++|++|..    ...+.|.. .+.|.+++.+.
T Consensus        89 -v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           89 -IRVVPTFKILKENSV----VGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             -CSSSSEEEEEETTEE----EEEEESSC-HHHHHHHHHHH
T ss_pred             -CCeeeEEEEEeCCcE----EEEEcCCC-HHHHHHHHHHh
Confidence             889999999988853    45678876 89999998765

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.49  E-value=1.1e-12  Score=131.40  Aligned_cols=204  Identities=20%  Similarity=0.300  Sum_probs=144.1

Q ss_pred             eccchhhhhhhhhcCCCcEEEE-EEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP  340 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~  340 (658)
                      +++.+.++.|++..   .+.|| ||.+.+....+.+..+|..++ .+.|+.+.     .++++++|+++. |+|++|+..
T Consensus        14 l~s~~~~~~~l~~~---~v~vVgff~~~~~~~~~~f~~~A~~l~-~~~F~~t~-----~~~v~~~~~v~~-p~i~lfk~~   83 (227)
T 4f9z_D           14 LTDVPAAMEFIAAT---EVAVIGFFQDLEIPAVPILHSMVQKFP-GVSFGIST-----DSEVLTHYNITG-NTICLFRLV   83 (227)
T ss_dssp             CCSHHHHHHHHHTS---SEEEEEECSCSCSTHHHHHHHHTTTCT-TSEEEEEC-----CHHHHHHTTCCS-SEEEEEETT
T ss_pred             eCCHHHHHHHHhcC---CeEEEEEecCCCchhHHHHHHHHHhCC-CceEEEEC-----CHHHHHHcCCCC-CeEEEEEec
Confidence            44544478887643   35454 666555455677888888884 78888753     467999999986 999999987


Q ss_pred             CCCeeeecC----CCChHHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHH
Q 006171          341 GVKPVVYYG----SFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRET  415 (658)
Q Consensus       341 ~~~p~~y~g----~~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~  415 (658)
                      +.++..|.|    .++.+.|.+||+.+.+|++++++..+..+ .+..      +.    .++++++.+ ...+.+++++.
T Consensus        84 ~~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~-~~~~------~~----~~~~l~f~~~~~~~~~~~~~~  152 (227)
T 4f9z_D           84 DNEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIG-LFNS------VI----QIHLLLIMNKASPEYEENMHR  152 (227)
T ss_dssp             TTEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHH-HHHS------SC----CEEEEEEECTTSTTHHHHHHH
T ss_pred             CcccccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHH-Hhcc------CC----ceEEEEEEcCCcchHHHHHHH
Confidence            777878874    78999999999999999999999988654 2311      11    255565654 34567788888


Q ss_pred             HHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEecc--chHHHHHHHcccCCcccccCCcCCCCCCCeEEEEE
Q 006171          416 IRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGE--AQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVR  493 (658)
Q Consensus       416 lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~--~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~  493 (658)
                      ++.+|+                      .++++ +.|+|+|++  ...+.++.|-...            .+.|.|+|+ 
T Consensus       153 ~~~vAk----------------------~~k~~-i~F~~vd~~~~~~~~~l~~fgl~~------------~~~P~~~i~-  196 (227)
T 4f9z_D          153 YQKAAK----------------------LFQGK-ILFILVDSGMKENGKVISFFKLKE------------SQLPALAIY-  196 (227)
T ss_dssp             HHHHHH----------------------HTTTT-CEEEEEETTSGGGHHHHHHTTCCG------------GGCSEEEEE-
T ss_pred             HHHHHH----------------------HhhCC-EEEEEeCCccHhHHHHHHHcCCCc------------ccCCEEEEE-
Confidence            888877                      67665 999999995  4567888772221            145999998 


Q ss_pred             eecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          494 YKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       494 ~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                         |.... .+|.      +   +.+              .-+.+.|.+||.+++.
T Consensus       197 ---~~~~~-~ky~------~---~~~--------------~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          197 ---QTLDD-EWDT------L---PTA--------------EVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             ---ESSSC-CEEE------E---TTC--------------CCCHHHHHHHHHHHHT
T ss_pred             ---ECCCC-cccc------C---CcC--------------CCCHHHHHHHHHHHhC
Confidence               54331 2343      1   211              2256899999999997

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.49  E-value=7.1e-15  Score=131.79  Aligned_cols=101  Identities=15%  Similarity=0.204  Sum_probs=88.4

Q ss_pred             eEEEecCCCCCccc-c---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTSEDFPSIF-H---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .+..++.++|+..+ .   .+++++|.||++||++|+.+.|.|+++++++.+ +.+..|||++++   .+|++++     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~---~~~~~~~-----   84 (122)
T 2vlu_A           14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELK---PIAEQFS-----   84 (122)
T ss_dssp             CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTT-----
T ss_pred             ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCH---HHHHHcC-----
Confidence            35677889999988 3   589999999999999999999999999999887 899999999554   5999999     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       |+++||+++|++|..    ...|.|.. .+.|.+|+.+.
T Consensus        85 -v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  118 (122)
T 2vlu_A           85 -VEAMPTFLFMKEGDV----KDRVVGAI-KEELTAKVGLH  118 (122)
T ss_dssp             -CCSSSEEEEEETTEE----EEEEESSC-HHHHHHHHHHH
T ss_pred             -CCcccEEEEEeCCEE----EEEEeCcC-HHHHHHHHHHH
Confidence             889999999988753    45788998 99999999876

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.49  E-value=2.4e-15  Score=134.52  Aligned_cols=101  Identities=13%  Similarity=0.180  Sum_probs=82.3

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc---hhhhHHHhhCCCCcccce
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~---~~~~~Lc~k~~i~k~f~V  214 (658)
                      +..++.++|+..+.++++++|.||||||++|+++.|.|+++++.+..  .+..+|++..   .....++++++      |
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~------i   85 (118)
T 1zma_A           14 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFINSEEPSQLNDLQAFRSRYG------I   85 (118)
T ss_dssp             SEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEEETTCGGGHHHHHHHHHHHT------C
T ss_pred             hhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC--eEEEEECCCcCcHHHHHHHHHHcC------C
Confidence            46788889998887788999999999999999999999999998764  4445554421   13345889998      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~  250 (658)
                      .++||+++|.+|..    ...+.|.++.+.|.+|+.
T Consensus        86 ~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           86 PTVPGFVHITDGQI----NVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             CSSCEEEEEETTEE----EEECCTTCCHHHHHHHHT
T ss_pred             CCCCeEEEEECCEE----EEEecCCCCHHHHHHHhh
Confidence            89999999988754    467899999999999974

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.48  E-value=8.3e-15  Score=130.59  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=86.4

Q ss_pred             eEEEecC-CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTS-EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..++. ++|+..+.  ++++++|.||++||++|+++.|.|+++++.+  .+.++.|||++++   .+|++++      
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~---~~~~~~~------   82 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLE---ETARKYN------   82 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSH---HHHHHTT------
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccH---HHHHHcC------
Confidence            3788998 89999885  7899999999999999999999999999887  5689999999554   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|++|..    ...+.| .+.+.|.+++.+.
T Consensus        83 v~~~Pt~~~~~~G~~----~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           83 ISAMPTFIAIKNGEK----VGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             CCSSSEEEEEETTEE----EEEEES-SCHHHHHHHHHHH
T ss_pred             CCccceEEEEeCCcE----EEEEeC-CCHHHHHHHHHHh
Confidence            889999999988753    456788 6889999998764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.48  E-value=2.4e-14  Score=129.25  Aligned_cols=101  Identities=14%  Similarity=0.143  Sum_probs=86.3

Q ss_pred             EEecCCCCC-----ccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeee--cccchhhhHHHhhCCCCcc
Q 006171          139 NVVTSEDFP-----SIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE--LGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       139 ~~Lt~~nF~-----~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vd--c~e~~~~~~Lc~k~~i~k~  211 (658)
                      ..++..+|+     .....+++++|.||++||++|+.+.|.++++++.+++.+.+..||  ++++   ..++++++    
T Consensus         7 ~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~---~~~~~~~~----   79 (126)
T 2l57_A            7 KQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKN---IDLAYKYD----   79 (126)
T ss_dssp             SCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHH---HHHHHHTT----
T ss_pred             CCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCch---HHHHHHcC----
Confidence            456777777     445678999999999999999999999999999998667999999  8844   45999999    


Q ss_pred             cceeeeeEEEEcC-CCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~-~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||+++|. +|..    ...|.|..+.+.|.+++.+.
T Consensus        80 --v~~~Pt~~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  115 (126)
T 2l57_A           80 --ANIVPTTVFLDKEGNK----FYVHQGLMRKNNIETILNSL  115 (126)
T ss_dssp             --CCSSSEEEEECTTCCE----EEEEESCCCHHHHHHHHHHH
T ss_pred             --CcceeEEEEECCCCCE----EEEecCCCCHHHHHHHHHHH
Confidence              88999999998 5543    45688999999999999887

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.48  E-value=1.5e-14  Score=127.95  Aligned_cols=99  Identities=13%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             EEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeee
Q 006171          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (658)
Q Consensus       139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yP  218 (658)
                      ..++.++| +.+.++++++|.||++||++|+.+.|.|+++++.+. .+.+..||+++++   .+|++++      |+++|
T Consensus         6 ~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~---~l~~~~~------v~~~P   74 (110)
T 2l6c_A            6 DITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARP---ELMKELG------FERVP   74 (110)
T ss_dssp             BCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCH---HHHHHTT------CCSSC
T ss_pred             ecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCH---HHHHHcC------CcccC
Confidence            45788999 677778999999999999999999999999998875 4699999999544   5999999      88999


Q ss_pred             EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++|++|..    ...+.|..+.+.|.+++.+.
T Consensus        75 t~~~~~~G~~----v~~~~G~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           75 TLVFIRDGKV----AKVFSGIMNPRELQALYASI  104 (110)
T ss_dssp             EEEEEESSSE----EEEEESCCCHHHHHHHHHTC
T ss_pred             EEEEEECCEE----EEEEcCCCCHHHHHHHHHHH
Confidence            9999987753    46788999999999998776

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.48  E-value=5.9e-15  Score=135.70  Aligned_cols=102  Identities=16%  Similarity=0.198  Sum_probs=88.6

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc------hhhhHHHhhCCCCc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI------RLATHLAERKPIGQ  210 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~------~~~~~Lc~k~~i~k  210 (658)
                      .+..+|.++|++.+.+  +++|.|||+||++|+++.|.|++++++++  +.+..|||++.      .....+|++++   
T Consensus        17 ~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~---   89 (135)
T 3emx_A           17 RLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAG---   89 (135)
T ss_dssp             EEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHT---
T ss_pred             ceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcC---
Confidence            6789999999998866  99999999999999999999999999886  89999999211      14456899998   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |.++||+++|.+|..    ...+.|..+.+.+..++++.
T Consensus        90 ---v~~~Pt~~~~~~G~~----v~~~~G~~~~~~~~~~i~~~  124 (135)
T 3emx_A           90 ---VEGTPTLVFYKEGRI----VDKLVGATPWSLKVEKAREI  124 (135)
T ss_dssp             ---CCSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ---CceeCeEEEEcCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence               889999999998854    46789999999999999887

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.48  E-value=6.9e-15  Score=130.21  Aligned_cols=100  Identities=11%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      ...+|.++|++.++++++++|.||++||++|+++.|.++++++.+.+ +.+..|||++++   .+|++++      |.++
T Consensus        11 ~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~---~~~~~~~------v~~~   80 (112)
T 1syr_A           11 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVS---EVTEKEN------ITSM   80 (112)
T ss_dssp             EEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTH---HHHHHTT------CCSS
T ss_pred             EEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCCCH---HHHHHcC------CCcc
Confidence            47789999999998889999999999999999999999999998864 799999999554   5999999      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ||+++|.+|..    ...+.|. +.+.|.+|+.+.
T Consensus        81 Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           81 PTFKVYKNGSS----VDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             SEEEEEETTEE----EEEEESC-CHHHHHHHHHTT
T ss_pred             cEEEEEECCcE----EEEEeCC-CHHHHHHHHHHh
Confidence            99999987753    4567898 999999998765

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.47  E-value=6.5e-15  Score=138.21  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=86.4

Q ss_pred             ecCCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeee
Q 006171          141 VTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (658)
Q Consensus       141 Lt~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yP  218 (658)
                      .+.++|+..+  .++++++|.|||+||++|+.+.|.++++++++.+.+.++.||+++++   .+|++++      |.++|
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~---~l~~~~~------v~~~P   79 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA---VYTQYFD------ISYIP   79 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCC---HHHHHTT------CCSSS
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCH---HHHHHcC------CCccC
Confidence            4567888888  56899999999999999999999999999999887899999999554   4999999      88999


Q ss_pred             EEEEcCCCCCCCCCc---------ccccC-CCCHhHHHHHHHHh
Q 006171          219 SLVAFPPGCKSSDCM---------TRFEG-ELSVDAVTDWFATA  252 (658)
Q Consensus       219 Tl~~f~~g~~~~~~~---------~~Y~G-~rs~~~Lv~fv~k~  252 (658)
                      |+++|.+|..    .         ..+.| ..+.+.|.+++.+.
T Consensus        80 t~~~~~~G~~----v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A           80 STVFFFNGQH----MKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             EEEEEETTEE----EEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred             eEEEEECCeE----EEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence            9999998854    3         46789 89999999998775

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.47  E-value=3.5e-15  Score=157.56  Aligned_cols=67  Identities=24%  Similarity=0.442  Sum_probs=0.0

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ..|||++|||+++|+.+|||+|||+|+++||||+|+  .+.++|++|++||++|+||.+|+.||+|+..
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            469999999999999999999999999999999876  4677899999999999999999999999544

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.47  E-value=9.3e-15  Score=124.63  Aligned_cols=61  Identities=10%  Similarity=0.078  Sum_probs=55.3

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNY   96 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~Y   96 (658)
                      ..++|+||||+++|+.+|||+|||+|+++||||+++.    +.++|++|++||++|+|...|..+
T Consensus        15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~   79 (88)
T 1iur_A           15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN   79 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            5689999999999999999999999999999999985    467899999999999998777443

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.45  E-value=1.8e-14  Score=124.77  Aligned_cols=99  Identities=12%  Similarity=0.262  Sum_probs=84.4

Q ss_pred             EEecC-CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          139 NVVTS-EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       139 ~~Lt~-~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      ..+++ ++|++.+.  ++++++|.||++||++|+.+.|.++++++.+. .+.++.|||++++   .+|++++      |.
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~------v~   71 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNE---EAAAKYS------VT   71 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCH---HHHHHTT------CC
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCH---HHHHHcC------Cc
Confidence            45666 78888885  78999999999999999999999999999886 4699999999554   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|.+|..    ...+.| .+.+.|.+|+.+.
T Consensus        72 ~~Pt~~~~~~g~~----~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           72 AMPTFVFIKDGKE----VDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             SSSEEEEEETTEE----EEEEES-SCHHHHHHHHHHH
T ss_pred             cccEEEEEeCCcE----EEEEeC-CCHHHHHHHHHhh
Confidence            9999999987753    456788 6899999998764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.45  E-value=2.5e-14  Score=128.72  Aligned_cols=102  Identities=17%  Similarity=0.273  Sum_probs=88.3

Q ss_pred             eEEEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccce
Q 006171          137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      .+..+++ ++|++.+.++++++|.||++||++|+.+.|.|+++++.+.+. +.+..|||++++   .+|++++      |
T Consensus        16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~---~~~~~~~------v   86 (121)
T 2j23_A           16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQS---QIAQEVG------I   86 (121)
T ss_dssp             CEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCH---HHHHHHT------C
T ss_pred             ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCH---HHHHHcC------C
Confidence            3566666 889998888899999999999999999999999999998876 799999999554   4899998      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .++||+++|.+|..    ...|.|. +.+.|.+|+.+.
T Consensus        87 ~~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           87 RAMPTFVFFKNGQK----IDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             CSSSEEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             CcccEEEEEECCeE----EeeEcCC-CHHHHHHHHHHh
Confidence            89999999987753    4567898 899999999876

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.45  E-value=1.3e-14  Score=129.41  Aligned_cols=98  Identities=11%  Similarity=0.173  Sum_probs=82.7

Q ss_pred             EEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          139 NVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       139 ~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      ..+++ ++|++.+.++++++|.||++||++|+++.|.|+++++++.+ +.+..|||++++   .+|++++      |.++
T Consensus        15 ~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~---~l~~~~~------v~~~   84 (114)
T 2oe3_A           15 TKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESP---DIAKECE------VTAM   84 (114)
T ss_dssp             CBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTT------CCSB
T ss_pred             eecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCH---HHHHHCC------CCcc
Confidence            44554 45666677889999999999999999999999999999877 899999999554   4999998      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      ||+++|++|..    ...|.|.. .+.|.+++.+
T Consensus        85 Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           85 PTFVLGKDGQL----IGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             SEEEEEETTEE----EEEEESSC-HHHHHHHHHT
T ss_pred             cEEEEEeCCeE----EEEEeCCC-HHHHHHHHHh
Confidence            99999988753    45688988 8999998764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.44  E-value=5.4e-14  Score=157.30  Aligned_cols=104  Identities=15%  Similarity=0.263  Sum_probs=89.6

Q ss_pred             ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh-c--ccceeeeecccchhhhHHHhhCCCCcc
Q 006171          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-G--IANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~-g--~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      ..|..|+.++|+..+ ++++++||.||||||+||+.+.|.|+++++.++ +  .+.++.|||+.+.    +.. ++    
T Consensus       358 ~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~----~~~-~~----  428 (504)
T 2b5e_A          358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND----VRG-VV----  428 (504)
T ss_dssp             CSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC----CSS-CC----
T ss_pred             ccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccc----ccc-CC----
Confidence            468999999999988 678999999999999999999999999999987 3  4589999999654    222 56    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |++|||+++|++|..  .....|.|.++.++|++|+.+.
T Consensus       429 --v~~~Pt~~~~~~G~~--~~~~~~~G~~~~~~l~~~i~~~  465 (504)
T 2b5e_A          429 --IEGYPTIVLYPGGKK--SESVVYQGSRSLDSLFDFIKEN  465 (504)
T ss_dssp             --CSSSSEEEEECCTTS--CCCCBCCSCCCHHHHHHHHHHH
T ss_pred             --ceecCeEEEEeCCce--ecceEecCCCCHHHHHHHHHhc
Confidence              999999999988853  1257899999999999999987

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.43  E-value=5.5e-14  Score=134.99  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=56.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhhhcc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNY   96 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~------~~~~f~~i~~Aye~L~d~~~R~~Y   96 (658)
                      ..|+|++|||++.|+.++||+|||+|+++||||++++      +.++|++|++||++|+||.+|+.|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3699999999999999999999999999999998763      456899999999999999999987

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.43  E-value=4e-14  Score=121.16  Aligned_cols=53  Identities=17%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCC
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTD   89 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~------~~~~f~~i~~Aye~L~d   89 (658)
                      .++|++|||++.|+.++||+|||+++++||||+|++      +.++|++|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999874      45679999999999974

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.43  E-value=1.3e-14  Score=159.60  Aligned_cols=105  Identities=21%  Similarity=0.354  Sum_probs=88.6

Q ss_pred             ceEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhh---c-----ccceeeeecccchhhhHHHhh
Q 006171          136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE---G-----IANTGMVELGDIRLATHLAER  205 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~---g-----~~~vg~Vdc~e~~~~~~Lc~k  205 (658)
                      +.|..||.++|+..+.  .++++||+||||||++|+++.|.|+++++.+.   +     .+.|++|||++++   .+|++
T Consensus        23 ~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~---~la~~   99 (470)
T 3qcp_A           23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV---DLCRK   99 (470)
T ss_dssp             TTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH---HHHHH
T ss_pred             CCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH---HHHHH
Confidence            4689999999999984  34799999999999999999999999999997   3     4799999999554   59999


Q ss_pred             CCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          206 KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       206 ~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++      |.++||+++|.+|..  .....|.|.++.+.| .|+.+.
T Consensus       100 y~------V~~~PTlilf~~gg~--~~~~~y~G~r~~e~L-~fI~k~  137 (470)
T 3qcp_A          100 YD------INFVPRLFFFYPRDS--CRSNEECGTSSLEHV-AFENSH  137 (470)
T ss_dssp             TT------CCSSCEEEEEEESSC--CCTTSCCCCCCEEEE-ECSCTT
T ss_pred             cC------CCccCeEEEEECCCc--eEEEEeeCCCCHHHH-HHHHHh
Confidence            99      889999999976543  235789999988877 666554

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.43  E-value=2.5e-14  Score=129.09  Aligned_cols=99  Identities=11%  Similarity=0.173  Sum_probs=79.6

Q ss_pred             eEEEecCCCCCccc-cCCC--cEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIF-HDSK--PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~--~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|.++|.++|.+.| ++.+  +++|.||||||++|+.+.|.++++|+++. .++|.+||+++.      +++++      
T Consensus         4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~------~~~~~------   70 (118)
T 3evi_A            4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC------IQHYH------   70 (118)
T ss_dssp             SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT------STTCC------
T ss_pred             ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh------HHHCC------
Confidence            46889999999888 4443  89999999999999999999999999985 479999999932      46666      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCC-------CCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGE-------LSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~-------rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|++|..    ...+.|.       .+.++|..++.+.
T Consensus        71 v~~~PT~~~fk~G~~----v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           71 DNCLPTIFVYKNGQI----EAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             GGGCSEEEEEETTEE----EEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCEE----EEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999999999999864    3455553       3677777777554

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.43  E-value=3.2e-14  Score=133.66  Aligned_cols=102  Identities=15%  Similarity=0.236  Sum_probs=86.1

Q ss_pred             eEEEec-CCCCCccccC--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVT-SEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt-~~nF~~~v~~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..++ .++|+..+.+  +++++|.||++||++|+++.|.|+++++.+. .+.++.|||++++   .+|++++      
T Consensus        13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~---~l~~~~~------   82 (153)
T 2wz9_A           13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVP---EVSEKYE------   82 (153)
T ss_dssp             CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH---HHHHHTT------
T ss_pred             CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCH---HHHHHcC------
Confidence            467787 4889988855  8999999999999999999999999999874 4799999999554   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      |+++||+++|.+|..    ...+.| .+.+.|.+|+.+.+
T Consensus        83 v~~~Pt~~~~~~G~~----~~~~~G-~~~~~l~~~i~~~l  117 (153)
T 2wz9_A           83 ISSVPTFLFFKNSQK----IDRLDG-AHAPELTKKVQRHA  117 (153)
T ss_dssp             CCSSSEEEEEETTEE----EEEEES-SCHHHHHHHHHHHS
T ss_pred             CCCCCEEEEEECCEE----EEEEeC-CCHHHHHHHHHHHh
Confidence            889999999997743    345677 47889999998874

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.42  E-value=3.7e-14  Score=137.15  Aligned_cols=68  Identities=16%  Similarity=0.357  Sum_probs=61.2

Q ss_pred             CCCCccCccccc------CccC-CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhccccc
Q 006171           32 PRSFPPSHYDAL------GIKP-YSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVY   99 (658)
Q Consensus        32 ~~~~~~d~Y~iL------gv~~-~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~   99 (658)
                      ......|||+||      |+++ +++.++||+|||+|+++||||+++++.++|.+|++||++|+||.+|+.||..
T Consensus         6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            445578999999      4665 8999999999999999999999987788999999999999999999999983

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.42  E-value=4.5e-14  Score=135.54  Aligned_cols=63  Identities=11%  Similarity=0.255  Sum_probs=57.9

Q ss_pred             CcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCCh--------HHHHHHHHHHHHHcCChhhhhcccccC
Q 006171           38 SHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYDVYG  100 (658)
Q Consensus        38 d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Aye~L~d~~~R~~YD~~g  100 (658)
                      |||++|||++++  +.++||+|||+|+++||||++++.        .+.|..|++||++|+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  999999999999999999988642        357999999999999999999999763

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.41  E-value=5.3e-14  Score=129.30  Aligned_cols=105  Identities=10%  Similarity=0.159  Sum_probs=87.5

Q ss_pred             EEEec-CCCCCcccc----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          138 FNVVT-SEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       138 V~~Lt-~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      +..++ .++|++.+.    .+++++|.||++||++|+.+.|.|+++++.+. .+.+..|||++++   .+|++++     
T Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~---~~~~~~~-----   96 (139)
T 3d22_A           26 VHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELS---DFSASWE-----   96 (139)
T ss_dssp             CEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH---HHHHHTT-----
T ss_pred             EEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccH---HHHHHcC-----
Confidence            45564 689998883    58899999999999999999999999999884 4699999999554   5999999     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCC
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP  257 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP  257 (658)
                       |.++||+++|.+|..    ...+.|. +.+.|.+++.+.+..+|
T Consensus        97 -v~~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~~~~~~  135 (139)
T 3d22_A           97 -IKATPTFFFLRDGQQ----VDKLVGA-NKPELHKKITAILDSLP  135 (139)
T ss_dssp             -CCEESEEEEEETTEE----EEEEESC-CHHHHHHHHHHHHHTSC
T ss_pred             -CCcccEEEEEcCCeE----EEEEeCC-CHHHHHHHHHHHhccCC
Confidence             889999999987753    4567788 88999999988755444

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.41  E-value=7.2e-14  Score=137.93  Aligned_cols=63  Identities=13%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             ccCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccc
Q 006171           36 PPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        36 ~~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      ..|||+||||+++  ++.++||+|||+|+++||||+++.        +.++|.+|++||++|+||.+|+.||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            5699999999986  789999999999999999999863        23569999999999999999999995

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.40  E-value=4e-14  Score=131.73  Aligned_cols=99  Identities=11%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             cCCCCCccc-c-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeE
Q 006171          142 TSEDFPSIF-H-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       142 t~~nF~~~v-~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      +.++|+..+ + ++++++|.|||+||++|+.+.|.++++++++++.+.++.||+++++   .+|++++      |+++||
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~~~~~~------i~~~Pt   80 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP---DFNKMYE------LYDPCT   80 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC---TTTTSSC------SCSSCE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCH---HHHHHcC------CCCCCE
Confidence            456787766 4 6899999999999999999999999999999887899999999655   4888888      889999


Q ss_pred             EEEcCCCCCCCCCcc--------cccCCCC-HhHHHHHHHHh
Q 006171          220 LVAFPPGCKSSDCMT--------RFEGELS-VDAVTDWFATA  252 (658)
Q Consensus       220 l~~f~~g~~~~~~~~--------~Y~G~rs-~~~Lv~fv~k~  252 (658)
                      +++|.+|..   ...        ...|..+ .+.|.+++.+.
T Consensus        81 ~~~~~~G~~---v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           81 VMFFFRNKH---IMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             EEEEETTEE---EEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             EEEEECCcE---EEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            999988753   111        2345553 77888887665

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.40  E-value=9.1e-14  Score=138.30  Aligned_cols=101  Identities=16%  Similarity=0.108  Sum_probs=86.2

Q ss_pred             EEecCCCCCccccCCCcE-EEEEeccCCCCCCCChHHHHHHHHHhh----cccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          139 NVVTSEDFPSIFHDSKPW-LIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       139 ~~Lt~~nF~~~v~~~~~~-lV~FYapwC~~Ck~l~P~w~~~A~~l~----g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      ..++.++|+.+...++++ +|.||||||++|+++.|.|+++++.+.    +.+.++.|||++++   .+|++++      
T Consensus       119 ~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------  189 (226)
T 1a8l_A          119 TNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP---EWADQYN------  189 (226)
T ss_dssp             CCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH---HHHHHTT------
T ss_pred             CCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCH---HHHHhCC------
Confidence            457777777766555666 999999999999999999999999997    46799999999554   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus       190 v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          190 VMAVPKIVIQVNGED----RVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             CCSSCEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CcccCeEEEEeCCce----eEEEcCCCCHHHHHHHHHHh
Confidence            889999999998854    46789999999999999875

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.39  E-value=7.9e-14  Score=114.21  Aligned_cols=58  Identities=16%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             ccCcccccCccC-CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhh
Q 006171           36 PPSHYDALGIKP-YSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKR   94 (658)
Q Consensus        36 ~~d~Y~iLgv~~-~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~   94 (658)
                      ..++|+||||++ +++.++||+|||+|+++||||++ ++.+.|++|++||++|+++..|+
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhcC
Confidence            358999999999 79999999999999999999996 67789999999999999987663

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.39  E-value=6.2e-14  Score=126.98  Aligned_cols=101  Identities=12%  Similarity=0.142  Sum_probs=85.5

Q ss_pred             eEEEe-cCCCCCcccc----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcc
Q 006171          137 AFNVV-TSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       137 ~V~~L-t~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      .|..| |.++|+..+.    ++++++|.||++||++|+.+.|.|+++++++. .+.+..||+++++   .+|++++    
T Consensus        17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~---~l~~~~~----   88 (124)
T 1xfl_A           17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELK---SVASDWA----   88 (124)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSH---HHHHHTT----
T ss_pred             cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCH---HHHHHcC----
Confidence            46777 5688998884    58999999999999999999999999999986 4689999999554   5999999    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||+++|++|..    ...+.| .+.+.|.+++.+.
T Consensus        89 --v~~~Pt~~~~~~G~~----~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           89 --IQAMPTFMFLKEGKI----LDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             --CCSSSEEEEEETTEE----EEEEES-CCHHHHHHHHHHH
T ss_pred             --CCccCEEEEEECCEE----EEEEeC-CCHHHHHHHHHHh
Confidence              889999999987753    356778 5889999998775

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.38  E-value=9.4e-14  Score=127.86  Aligned_cols=100  Identities=10%  Similarity=0.151  Sum_probs=81.7

Q ss_pred             ceEEEecCCCCCccccC---CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          136 HAFNVVTSEDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       136 ~~V~~Lt~~nF~~~v~~---~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      ..|..||.++|.+.|..   +++++|.|||+||++|+.+.|.|+++|+++. .+.++.||++++.      ++++     
T Consensus        10 g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~------~~~~-----   77 (135)
T 2dbc_A           10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI------EHYH-----   77 (135)
T ss_dssp             CSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC------SSCC-----
T ss_pred             CceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc------ccCC-----
Confidence            34688899999998832   3699999999999999999999999999874 4689999999442      4555     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCC-------CHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGEL-------SVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~r-------s~~~Lv~fv~k~  252 (658)
                       |.++||+++|.+|..    ...+.|..       +.+.|..++.+.
T Consensus        78 -i~~~Pt~~~~~~G~~----v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           78 -DNCLPTIFVYKNGQI----EGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             -SSCCSEEEEESSSSC----SEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             -CCCCCEEEEEECCEE----EEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence             999999999998854    35566764       788899998876

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.38  E-value=8.8e-14  Score=122.73  Aligned_cols=55  Identities=9%  Similarity=-0.003  Sum_probs=49.8

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--C--------hHHHHHHHHHHHHHcCChh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--P--------STADFLKIQYAYELLTDPL   91 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~--------~~~~f~~i~~Aye~L~d~~   91 (658)
                      ..|||+|||++. |+.++||+|||+|+++||||+|+  +        +.++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            579999999996 99999999999999999999875  2        2578999999999999985

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.37  E-value=1.2e-13  Score=122.57  Aligned_cols=102  Identities=16%  Similarity=0.185  Sum_probs=85.6

Q ss_pred             eEEEe-cCCCCCcccc----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcc
Q 006171          137 AFNVV-TSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       137 ~V~~L-t~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      .|..+ +.++|++.+.    .+++++|.||++||++|+.+.|.|+++++.+. .+.+..||+++++   .++++++    
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~----   78 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELK---DVAEAYN----   78 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH---HHHHHTT----
T ss_pred             ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCH---HHHHHcC----
Confidence            45677 4688998884    38999999999999999999999999999886 4689999999544   5899999    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                        |+++||+++|++|..    ...+.| .+.+.|.+++.+.+
T Consensus        79 --v~~~Pt~~~~~~g~~----~~~~~g-~~~~~l~~~l~~~~  113 (118)
T 2vm1_A           79 --VEAMPTFLFIKDGEK----VDSVVG-GRKDDIHTKIVALM  113 (118)
T ss_dssp             --CCSBSEEEEEETTEE----EEEEES-CCHHHHHHHHHHHH
T ss_pred             --CCcCcEEEEEeCCeE----EEEecC-CCHHHHHHHHHHHh
Confidence              889999999987753    356678 58899999998873

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.36  E-value=1.4e-13  Score=126.35  Aligned_cols=102  Identities=10%  Similarity=0.142  Sum_probs=83.8

Q ss_pred             eEEEecC-CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTS-EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..++. ++|+..+.  .+++++|.|||+||++|+.+.|.|+++++.+  .+.+..|||+++.   .+|++++      
T Consensus        21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~---~l~~~~~------   89 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHP---KLNDQHN------   89 (133)
T ss_dssp             EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCH---HHHHHTT------
T ss_pred             cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchH---HHHHhcC------
Confidence            5788886 78888884  3579999999999999999999999998876  3689999999554   5999999      


Q ss_pred             eeeeeEEEEcC--CCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFP--PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~--~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|.  +|..  .....+.|. +.+.|.+++.+.
T Consensus        90 v~~~Pt~~~~~~~~g~g--~~~~~~~G~-~~~~l~~~l~~~  127 (133)
T 3cxg_A           90 IKALPTFEFYFNLNNEW--VLVHTVEGA-NQNDIEKAFQKY  127 (133)
T ss_dssp             CCSSSEEEEEEEETTEE--EEEEEEESC-CHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEecCCCe--EEEEEEcCC-CHHHHHHHHHHH
Confidence            88999999996  6641  023567787 899999999876

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.35  E-value=8.8e-14  Score=122.39  Aligned_cols=101  Identities=13%  Similarity=0.200  Sum_probs=84.8

Q ss_pred             eEEEe-cCCCCCcccc----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcc
Q 006171          137 AFNVV-TSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       137 ~V~~L-t~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      .|..+ +.++|++.+.    ++++++|.||++||++|+.+.|.++++++.+. .+.+..||+++++   .++++++    
T Consensus         5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~---~~~~~~~----   76 (113)
T 1ti3_A            5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELK---AVAEEWN----   76 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCH---HHHHHHH----
T ss_pred             ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccH---HHHHhCC----
Confidence            46777 5688998884    48899999999999999999999999999886 4689999999554   5899988    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||+++|.+|..    ...+.| .+.+.|.+++.+.
T Consensus        77 --v~~~Pt~~~~~~G~~----~~~~~g-~~~~~l~~~l~~~  110 (113)
T 1ti3_A           77 --VEAMPTFIFLKDGKL----VDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             --CSSTTEEEEEETTEE----EEEEEC-CCTTHHHHHHHHH
T ss_pred             --CCcccEEEEEeCCEE----EEEEec-CCHHHHHHHHHHh
Confidence              889999999987753    345678 6889999998776

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=2.6e-13  Score=122.87  Aligned_cols=103  Identities=12%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             EEecCCCCCcccc----CCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcc
Q 006171          139 NVVTSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       139 ~~Lt~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      +.++..+|++.+.    .+++++|.||++||++|+.+.|.+   +++++.+++.+.+..|||+.. ....+|++++    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~~~----   83 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKG-EGVELRKKYG----   83 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSST-THHHHHHHTT----
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCc-chHHHHHHcC----
Confidence            4568889988873    688999999999999999999999   788887777778899999842 1245999999    


Q ss_pred             cceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||+++| ++|..    ...|.|..+.+.|.+|+.+.
T Consensus        84 --v~~~Pt~~~~d~~G~~----~~~~~G~~~~~~l~~~l~~~  119 (130)
T 2kuc_A           84 --VHAYPTLLFINSSGEV----VYRLVGAEDAPELLKKVKLG  119 (130)
T ss_dssp             --CCSSCEEEEECTTSCE----EEEEESCCCHHHHHHHHHHH
T ss_pred             --CCCCCEEEEECCCCcE----EEEecCCCCHHHHHHHHHHH
Confidence              8899999999 56643    45688999999999999887

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.35  E-value=1.1e-13  Score=124.18  Aligned_cols=100  Identities=12%  Similarity=0.066  Sum_probs=82.8

Q ss_pred             EEEe--cCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          138 FNVV--TSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       138 V~~L--t~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      |..+  +.++|++.+ +++++++|.||++||++|+.+.|.++++++++ +.+.+..|||++++   .+|++++      |
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~---~~~~~~~------i   74 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNG---NAADAYG------V   74 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCH---HHHHHTT------C
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCH---HHHHhcC------C
Confidence            4556  567888666 67899999999999999999999999999998 66799999999554   5999999      8


Q ss_pred             eeeeEEEEcCC----CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          215 RGLPSLVAFPP----GCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f~~----g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +++||+++|.+    |..    ...+.|..+ ++|.+.+.+.
T Consensus        75 ~~~Pt~~~~~~~~~~G~~----~~~~~G~~~-~~l~~~~~~~  111 (118)
T 2f51_A           75 SSIPALFFVKKEGNEIKT----LDQFVGADV-SRIKADIEKF  111 (118)
T ss_dssp             CSSSEEEEEEEETTEEEE----EEEEESCCH-HHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCcceE----EEeecCCCH-HHHHHHHHHh
Confidence            89999999987    542    456788775 5588888776

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.33  E-value=2.7e-13  Score=122.53  Aligned_cols=101  Identities=13%  Similarity=0.209  Sum_probs=84.4

Q ss_pred             EEEe-cCCCCCcccc----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          138 FNVV-TSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       138 V~~L-t~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      +..+ +.++|+..+.    ++++++|.||++||++|+++.|.|+++++.+. .+.+..|||++++   .+|++++     
T Consensus        16 ~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~---~~~~~~~-----   86 (130)
T 1wmj_A           16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELK---EVAEKYN-----   86 (130)
T ss_dssp             SBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSG---GGHHHHT-----
T ss_pred             eEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchH---HHHHHcC-----
Confidence            4556 4578888883    48899999999999999999999999999886 4689999999554   4899998     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                       |.++||+++|++|..    ...+.| .+.+.|.+++.+.+
T Consensus        87 -v~~~Pt~~~~~~g~~----~~~~~g-~~~~~l~~~l~~~~  121 (130)
T 1wmj_A           87 -VEAMPTFLFIKDGAE----ADKVVG-ARKDDLQNTIVKHV  121 (130)
T ss_dssp             -CCSSCCCCBCTTTTC----CBCCCT-TCTTTHHHHHHHHT
T ss_pred             -CCccceEEEEeCCeE----EEEEeC-CCHHHHHHHHHHHH
Confidence             889999999988754    356778 57899999998874

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.32  E-value=1.6e-13  Score=136.98  Aligned_cols=101  Identities=16%  Similarity=0.268  Sum_probs=83.8

Q ss_pred             eEEEe-cCCCCCcccc-C--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVV-TSEDFPSIFH-D--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~L-t~~nF~~~v~-~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|..| +.++|...|. +  +++++|.||+|||++|+.+.|.|+++|..+. .+.|++|||+ ++   .+|++|+     
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~---~l~~~~~-----  169 (217)
T 2trc_P          100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NT---GAGDRFS-----  169 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HH---TCSTTSC-----
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cH---HHHHHCC-----
Confidence            46788 8899999883 3  3899999999999999999999999999884 5799999998 33   3788888     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCH-------hHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSV-------DAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~-------~~Lv~fv~k~  252 (658)
                       |.++||+++|.+|..    ...|.|.++.       +.|..|+.+.
T Consensus       170 -i~~~PTl~~~~~G~~----v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          170 -SDVLPTLLVYKGGEL----ISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             -GGGCSEEEEEETTEE----EEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             -CCCCCEEEEEECCEE----EEEEeCCcccCcccCCHHHHHHHHHHc
Confidence             999999999998853    4567776653       8888888765

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.31  E-value=2.4e-12  Score=107.18  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCc
Q 006171          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (658)
Q Consensus       154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~  233 (658)
                      .+.+|.||++||++|+++.|.++++++++.+.+.+..||+++++   .++++++      |+++||+++  +|.      
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~~Pt~~~--~G~------   65 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP---QKAMEYG------IMAVPTIVI--NGD------   65 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC---CTTTSTT------TCCSSEEEE--TTE------
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHCC------CcccCEEEE--CCE------
Confidence            46799999999999999999999999999877899999999655   3888888      889999998  552      


Q ss_pred             ccccCCCCHhHHHHHHHHh
Q 006171          234 TRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       234 ~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ..+.|..+.+.|.+++.+.
T Consensus        66 ~~~~G~~~~~~l~~~l~~~   84 (85)
T 1fo5_A           66 VEFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             EECCSSSSSHHHHHHHHHH
T ss_pred             EeeecCCCHHHHHHHHHHh
Confidence            2678988999999998765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.31  E-value=3.6e-12  Score=106.18  Aligned_cols=81  Identities=12%  Similarity=0.066  Sum_probs=70.9

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcc
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT  234 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~  234 (658)
                      +.+|.||++||++|+++.|.++++++++.+.+.+..||+++++   .++++++      |+++||+++  +|.     . 
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~~Pt~~~--~G~-----~-   65 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR---EKAIEYG------LMAVPAIAI--NGV-----V-   65 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCG---GGGGGTC------SSCSSEEEE--TTT-----E-
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCH---HHHHhCC------ceeeCEEEE--CCE-----E-
Confidence            4689999999999999999999999999877899999999654   4889998      889999998  552     2 


Q ss_pred             cccCCCCHhHHHHHHHHh
Q 006171          235 RFEGELSVDAVTDWFATA  252 (658)
Q Consensus       235 ~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .+.|..+.+.|.+++.+.
T Consensus        66 ~~~G~~~~~~l~~~l~~~   83 (85)
T 1nho_A           66 RFVGAPSREELFEAINDE   83 (85)
T ss_dssp             EEECSSCCHHHHHHHHHH
T ss_pred             EEccCCCHHHHHHHHHHH
Confidence            678988999999999775

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.30  E-value=6.6e-10  Score=123.22  Aligned_cols=310  Identities=12%  Similarity=0.188  Sum_probs=197.8

Q ss_pred             EEEe-cCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVV-TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~L-t~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      +..+ +.+++++.+..+++++|-||.++|.   ...+.|.++|..+.+...++.++..      .++++++      +..
T Consensus       112 ~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~---~~~~~f~~~a~~~~~~~~F~~~~~~------~~~~~~~------v~~  176 (481)
T 3f8u_A          112 SVPLRTEEEFKKFISDKDASIVGFFDDSFS---EAHSEFLKAASNLRDNYRFAHTNVE------SLVNEYD------DNG  176 (481)
T ss_dssp             EEEECSHHHHHHHTTSSSCEEEEEESCTTC---HHHHHHHHHHHHHTTTSCEEEECCH------HHHHHHC------SSS
T ss_pred             ceecCCHHHHHHHHhcCCcEEEEEECCCcc---chHHHHHHHHHHhccCceEEEECCH------HHHHHhC------CCC
Confidence            5666 4567888888889999999998865   4478999999999888899887644      3788888      777


Q ss_pred             eeEEEEcCCCCC---CCCCccccc-CCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCC-CCC
Q 006171          217 LPSLVAFPPGCK---SSDCMTRFE-GELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT-GER  291 (658)
Q Consensus       217 yPTl~~f~~g~~---~~~~~~~Y~-G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~-~~~  291 (658)
                      .| +++|++...   .......|. |..+.++|.+|+...  .+|.+..++..+ ...+..    ....++++... .+.
T Consensus       177 ~~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~--~~p~v~e~t~~n-~~~~~~----~~~~v~~~~~~~~~~  248 (481)
T 3f8u_A          177 EG-IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN--IFGICPHMTEDN-KDLIQG----KDLLIAYYDVDYEKN  248 (481)
T ss_dssp             EE-EEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHH--TTTTSCEECTTT-HHHHTT----SSEEEEEECCCTTTC
T ss_pred             Cc-EEEEecccccCccCCcccccCCCCCCHHHHHHHHHHh--CCCCccccChhH-HHHhcC----CCceEEEEecccccc
Confidence            77 777773210   001347788 889999999999887  467666666655 344432    12333333321 111


Q ss_pred             C------cHHHHHHHHhhccC---ceEEEEEecccccHhHHhhcCCC----CCCEEEEEeCCCCCeeeecCCCChH--HH
Q 006171          292 A------SPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVE----SAPAIVFLKDPGVKPVVYYGSFNNS--RL  356 (658)
Q Consensus       292 ~------~~~~~~~A~~~~~~---~~f~~v~~~~~~s~~l~~~f~V~----~~Ptlvlfk~~~~~p~~y~g~~~~~--~L  356 (658)
                      .      ...++.+|..|++.   +.|+.+...  +.....+.||++    ..|.|+++...+ ....+.+.++.+  .|
T Consensus       249 ~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~--~~~~~l~~~gl~~~~~~~P~~~i~~~~~-~ky~~~~~~t~e~~~l  325 (481)
T 3f8u_A          249 AKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRK--TFSHELSDFGLESTAGEIPVVAIRTAKG-EKFVMQEEFSRDGKAL  325 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETT--TTHHHHGGGTCCCCTTCSCEEEEECSSS-CEEECCSCCCTTSHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHH--HHHHHHHHcCCCcccCCCcEEEEEcCCC-cccCCCcccCccHHHH
Confidence            1      12245588889887   888887522  235677899997    589999997433 333456778888  99


Q ss_pred             HHHHHhhccCCC---------c--------cccCcchhhhcccccCCcCCCCCCcccEEEEEEcCC-ChhHHHHHHHHHH
Q 006171          357 SEVMEQNKLQEL---------P--------QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-SPELNKMRETIRR  418 (658)
Q Consensus       357 ~~fi~~~~~~~v---------P--------~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~-~~~~~~~~~~lr~  418 (658)
                      .+|++...-..+         |        .++..+..+..-.      .+|     .++|.+..+ -.....+...+.+
T Consensus       326 ~~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~------~~k-----~vlv~f~a~wC~~C~~~~p~~~~  394 (481)
T 3f8u_A          326 ERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNN------ENK-----DVLIEFYAPWCGHCKNLEPKYKE  394 (481)
T ss_dssp             HHHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTC------TTC-----EEEEEEECTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhc------CCC-----cEEEEEecCcChhHHHhhHHHHH
Confidence            999876432211         1        2222222221111      122     555555443 3455677777777


Q ss_pred             HHHhhccccccccccccCCchHHHHhcCC-CcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecC
Q 006171          419 VQETLLSDDESNAADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRN  497 (658)
Q Consensus       419 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n  497 (658)
                      +++                      .+++ ..+.|+.||.+.. +++..              ..+...|.++++    +
T Consensus       395 l~~----------------------~~~~~~~v~~~~id~~~~-~~~~~--------------~~v~~~Pt~~~~----~  433 (481)
T 3f8u_A          395 LGE----------------------KLSKDPNIVIAKMDATAN-DVPSP--------------YEVRGFPTIYFS----P  433 (481)
T ss_dssp             HHH----------------------HTTTCSSEEEEEEETTSS-CCCTT--------------CCCCSSSEEEEE----C
T ss_pred             HHH----------------------HhccCCCEEEEEEECCch-hhHhh--------------CCCcccCEEEEE----e
Confidence            777                      4433 3699999999654 22221              245567999887    3


Q ss_pred             CccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          498 TTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       498 ~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                      .... .+                       ...|.|.++.++|.+||.+.+.
T Consensus       434 ~~~~-~~-----------------------~~~~~G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          434 ANKK-LN-----------------------PKKYEGGRELSDFISYLQREAT  461 (481)
T ss_dssp             TTCT-TS-----------------------CEECCSCCSHHHHHHHHHHHCS
T ss_pred             CCCe-Ee-----------------------eeEeCCCCCHHHHHHHHHHhcC
Confidence            3331 00                       1235667788999999999987

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.29  E-value=4.6e-13  Score=135.95  Aligned_cols=101  Identities=16%  Similarity=0.259  Sum_probs=82.7

Q ss_pred             eEEEe-cCCCCCccc-c--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVV-TSEDFPSIF-H--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~L-t~~nF~~~v-~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|..| +.++|...| .  .+++++|.||||||++|+.+.|.|+++|..+.+ ++|++|||++    ..+|++|+     
T Consensus       113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~----~~l~~~~~-----  182 (245)
T 1a0r_P          113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN----TGAGDRFS-----  182 (245)
T ss_dssp             SEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH----HCCTTSSC-----
T ss_pred             eEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc----HHHHHHCC-----
Confidence            47888 689999988 3  378999999999999999999999999999865 7999999984    34788888     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCC-------CCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGE-------LSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~-------rs~~~Lv~fv~k~  252 (658)
                       |.++||+++|.+|..    ...+.|.       ++.+.|..|+.+.
T Consensus       183 -I~~~PTll~~~~G~~----v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          183 -SDVLPTLLVYKGGEL----LSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             -TTTCSEEEEEETTEE----EEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             -CCCCCEEEEEECCEE----EEEEeCCcccccccccHHHHHHHHHHc
Confidence             889999999998853    2233332       5677888888776

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.29  E-value=7.7e-13  Score=121.19  Aligned_cols=102  Identities=16%  Similarity=0.259  Sum_probs=82.5

Q ss_pred             cCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccc-hhhhHHHhhCCCCccccee
Q 006171          142 TSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       142 t~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~-~~~~~Lc~k~~i~k~f~V~  215 (658)
                      +.++|+..+.  .+++++|.|||+||++|+++.|.+   +++++.+++ +.+..|||+++ .....+|++++      |.
T Consensus        18 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~------v~   90 (134)
T 2fwh_A           18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN------VL   90 (134)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT------CC
T ss_pred             CHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcC------CC
Confidence            4456666663  488999999999999999999999   999998876 78999999532 24456999999      88


Q ss_pred             eeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++| ++|..  .....|.|..+.+.|.+++.+.
T Consensus        91 ~~Pt~~~~d~~G~~--v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           91 GLPTILFFDGQGQE--HPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             SSSEEEEECTTSCB--CGGGCBCSCCCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCE--eeeeeeeeccCHHHHHHHHHhc
Confidence            99999999 66653  0014689999999999999775

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.28  E-value=3.9e-13  Score=118.80  Aligned_cols=78  Identities=10%  Similarity=-0.006  Sum_probs=62.9

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-h--hhhHHHhhCCCCcccceeeeeEEEEcCCCCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R--LATHLAERKPIGQIFFRRGLPSLVAFPPGCKS  229 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~--~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~  229 (658)
                      +++.+|.||||||++|+++.|.|+++++.++      .|||+.+ .  ....+|++++      |+++||+++  +|   
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~------V~~~PT~~i--~G---   74 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAG------ITSYPTWII--NG---   74 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTT------CCSSSEEEE--TT---
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcC------CeEeCEEEE--CC---
Confidence            4567899999999999999999999986653      7777721 1  2345999999      889999887  55   


Q ss_pred             CCCcccccCCCCHhHHHHHHHH
Q 006171          230 SDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       230 ~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                          ..|.|.++.+.|.+|+.-
T Consensus        75 ----~~~~G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           75 ----RTYTGVRSLEALAVASGY   92 (106)
T ss_dssp             ----EEEESCCCHHHHHHHHTC
T ss_pred             ----EEecCCCCHHHHHHHhCC
Confidence                348999999999999743

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.27  E-value=2.6e-12  Score=116.91  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=75.5

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHH--HHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce---eeeeEEEEc-C
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR---RGLPSLVAF-P  224 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~--~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V---~~yPTl~~f-~  224 (658)
                      .++++++|.||++||++|+.+.|.|+  ++++.+++.+.+..||+++......++++++      |   .++||+++| +
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~------v~~~~~~Pt~~~~d~  100 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYG------DPIQDGIPAVVVVNS  100 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTT------CGGGGCSSEEEEECT
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhC------CccCCccceEEEECC
Confidence            36899999999999999999999999  9999998778999999932113445999999      8   899999999 6


Q ss_pred             CCCCCCCCcccccC-------CCCHhHHHHHHHHh
Q 006171          225 PGCKSSDCMTRFEG-------ELSVDAVTDWFATA  252 (658)
Q Consensus       225 ~g~~~~~~~~~Y~G-------~rs~~~Lv~fv~k~  252 (658)
                      +|..    ...+.|       ..+.+.|.+|+.+.
T Consensus       101 ~G~~----~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          101 DGKV----RYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             TSCE----EEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             CCCE----EEEecCCcccccccCCHHHHHHHHHHh
Confidence            7653    455566       57888999998764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.26  E-value=1.9e-12  Score=129.15  Aligned_cols=98  Identities=12%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             EEEecCCCCCccccCCCcE-EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIFHDSKPW-LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~-lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      +..|+.++|+.++..++++ +|.||+|||++|+++.|.|++++..+ +.+.++.|||++++   .+|++++      |++
T Consensus       120 ~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~~~~---~l~~~~~------v~~  189 (229)
T 2ywm_A          120 KPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDASENQ---DLAEQFQ------VVG  189 (229)
T ss_dssp             CCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGGGCH---HHHHHTT------CCS
T ss_pred             ccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECCCCH---HHHHHcC------Ccc
Confidence            3567888888877655555 88999999999999999999999998 56799999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++  +|.     ...|.|.++.+.|.+|+.+.
T Consensus       190 ~Pt~~~--~G~-----~~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          190 VPKIVI--NKG-----VAEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             SSEEEE--GGG-----TEEEESCCCHHHHHHHHHHH
T ss_pred             cCEEEE--CCE-----EEEeeCCCCHHHHHHHHHHH
Confidence            999998  553     25689999999999999876

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.26  E-value=1.6e-12  Score=119.19  Aligned_cols=101  Identities=15%  Similarity=0.217  Sum_probs=87.9

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee-
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG-  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~-  216 (658)
                      |.++|.+||++.+.+..+++|.|||+ |++|+.++|.++++|++++|.+.|++||.++++   .++++||      |++ 
T Consensus         8 v~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~---~~a~~~g------i~~~   77 (133)
T 2djk_A            8 IGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFG---AHAGNLN------LKTD   77 (133)
T ss_dssp             SEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG---GGTTTTT------CCSS
T ss_pred             eeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhH---HHHHHcC------CCcc
Confidence            57789999998878888999999999 899999999999999999999999999999665   4889998      888 


Q ss_pred             -eeEEEEcCC--CCCCCCCccccc--CCCCHhHHHHHHHHhh
Q 006171          217 -LPSLVAFPP--GCKSSDCMTRFE--GELSVDAVTDWFATAI  253 (658)
Q Consensus       217 -yPTl~~f~~--g~~~~~~~~~Y~--G~rs~~~Lv~fv~k~v  253 (658)
                       .||+++|..  |..     ..+.  |..+.+.|.+|+.+.+
T Consensus        78 ~iPtl~i~~~~~g~~-----~~~~~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           78 KFPAFAIQEVAKNQK-----FPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             SSSEEEEECTTTCCB-----CCCCSSSCCCHHHHHHHHHHHH
T ss_pred             cCCEEEEEecCcCcc-----cCCCCccccCHHHHHHHHHHHH
Confidence             999999986  432     2333  9999999999998874

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.25  E-value=9.7e-13  Score=118.79  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=82.0

Q ss_pred             eEEEecCCCCCcccc--CCCcEEEEEecc-------CCCCCCCChHHHHHHHHHhhcccceeeeecccch----hhhHHH
Q 006171          137 AFNVVTSEDFPSIFH--DSKPWLIQVYSD-------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLA  203 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~--~~~~~lV~FYap-------wC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~----~~~~Lc  203 (658)
                      .+...+.++|++.+.  ++++++|.|||+       ||++|+.+.|.++++++.+.+.+.+..||+++..    ....++
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~   85 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   85 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence            456778899999884  489999999999       9999999999999999988777799999993100    233488


Q ss_pred             hhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          204 ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       204 ~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      ++++      |+++||+++|.++..    ...+.| .+.+.|.+|+.+
T Consensus        86 ~~~~------i~~~Pt~~~~~~~~~----~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           86 KNLK------VTAVPTLLKYGTPQK----LVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHC------CCSSSEEEETTSSCE----EEGGGG-GCHHHHHHHHHC
T ss_pred             HHCC------CCeeCEEEEEcCCce----Eecccc-CCHHHHHHHHhc
Confidence            8888      889999999988643    233444 467788888753

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.21  E-value=1e-10  Score=124.56  Aligned_cols=203  Identities=9%  Similarity=0.123  Sum_probs=144.2

Q ss_pred             eEEEec-CCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          137 AFNVVT-SEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       137 ~V~~Lt-~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      .+..|+ .++|++.+. ++++++|.||++||   ....+.|.++|..+.+...+|.+++.      .+|++++      |
T Consensus       124 ~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~---~~~~~~~~~~A~~~~~~~~f~~~~~~------~~~~~~~------v  188 (350)
T 1sji_A          124 PVEIINSKLEVQAFERIEDQIKLIGFFKSEE---SEYYKAFEEAAEHFQPYIKFFATFDK------GVAKKLS------L  188 (350)
T ss_dssp             SEEECCSHHHHHHHHHCCSSCEEEEECSCTT---SHHHHHHHHHHHHTTTTSEEEEECCH------HHHHHHT------C
T ss_pred             cceeccchHHHHHHhccCCCcEEEEEECCCC---cHHHHHHHHHHHhhccCcEEEEECCH------HHHHHcC------C
Confidence            356775 467888776 77899999999986   45579999999999888899988654      3889998      8


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCC---
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGE---  290 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~---  290 (658)
                      + +|+|++|+++..   .+..|.|. ++.++|.+|+...  ..|.+..++.++ ...+... +..+..+++|.....   
T Consensus       189 ~-~p~i~~~~~~~~---~~~~y~g~~~~~~~l~~fi~~~--~~p~v~elt~~~-~~~~~~~-~~~~~~~l~f~~~~~~~~  260 (350)
T 1sji_A          189 K-MNEVDFYEPFMD---EPIAIPDKPYTEEELVEFVKEH--QRPTLRRLRPED-MFETWED-DLNGIHIVAFAERSDPDG  260 (350)
T ss_dssp             C-TTCEEEECTTCS---SCEECSSSSCCHHHHHHHHHHH--CCCSEEECCTTT-HHHHHHS-CSSSEEEEEECCTTSHHH
T ss_pred             C-CCcEEEEeCCCC---CceecCCCCCCHHHHHHHHHHc--CccchhhcChhh-HHHHhcC-CCCCcEEEEEEcCCCccH
Confidence            8 999999997543   24789997 9999999999887  467666677666 3444432 111334555654221   


Q ss_pred             -CCcHHHHHHHHhhcc--CceEEEEEecccccHhHH----hhcCCC-CCCEEEEEeCCCCCeee--e---cCCCChHHHH
Q 006171          291 -RASPFVRQISRNYWA--YASFAFVLWREEESSIWW----NTFEVE-SAPAIVFLKDPGVKPVV--Y---YGSFNNSRLS  357 (658)
Q Consensus       291 -~~~~~~~~~A~~~~~--~~~f~~v~~~~~~s~~l~----~~f~V~-~~Ptlvlfk~~~~~p~~--y---~g~~~~~~L~  357 (658)
                       .....++.+|..|++  .+.|+.+....  ...++    +.||+. .+|+|++++........  +   .+.++.+.|.
T Consensus       261 ~~~~~~~~~vA~~~~~~~~~~f~~id~~~--~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~  338 (350)
T 1sji_A          261 YEFLEILKQVARDNTDNPDLSIVWIDPDD--FPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELE  338 (350)
T ss_dssp             HHHHHHHHHHHHHGGGCSSCCEEEECGGG--CHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEECchh--hHHHHHHHHhhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHH
Confidence             123445668888976  77888875332  24455    789998 48999999763332222  2   2478899999


Q ss_pred             HHHHhhc
Q 006171          358 EVMEQNK  364 (658)
Q Consensus       358 ~fi~~~~  364 (658)
                      +|++...
T Consensus       339 ~F~~d~~  345 (350)
T 1sji_A          339 DWIEDVL  345 (350)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998743

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.21  E-value=1.2e-11  Score=125.48  Aligned_cols=84  Identities=14%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhh----cccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~----g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~  227 (658)
                      .++++++.||||||+||+++.|.|+++|..+.    +.+.++.|||++++   .+|++++      |+++||+++  +|.
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~------V~~vPt~~i--~G~  205 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP---DIADKYG------VMSVPSIAI--NGY  205 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH---HHHHHTT------CCSSSEEEE--TTE
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH---HHHHHcC------CeeeCeEEE--CCE
Confidence            46688999999999999999999999999984    45689999999654   4899998      889999988  553


Q ss_pred             CCCCCcccccCCCCHhHHHHHHHHh
Q 006171          228 KSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       228 ~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                            ..|.|.++.++|++|+.+.
T Consensus       206 ------~~~~G~~~~~~l~~~l~~~  224 (243)
T 2hls_A          206 ------LVFVGVPYEEDFLDYVKSA  224 (243)
T ss_dssp             ------EEEESCCCHHHHHHHHHHH
T ss_pred             ------EEEeCCCCHHHHHHHHHHH
Confidence                  3489999999999999887

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.84  E-value=1.3e-12  Score=118.42  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=78.4

Q ss_pred             CCCccccCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       145 nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      .+......++++||.|||+||++|+.+.|.+   +++++.+++.+.+..|||+.+ ....+|++++      |.++||++
T Consensus        11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~~~------v~~~Pt~~   83 (130)
T 2lst_A           11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTP-EGQELARRYR------VPGTPTFV   83 (130)
Confidence            3444445788999999999999999999999   999998887778999999632 2245888888      88999999


Q ss_pred             Ec--CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          222 AF--PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       222 ~f--~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +|  .+|..  .....+.|.++.+.|.+++.+.
T Consensus        84 ~~d~~~G~~--~~~~~~~G~~~~~~l~~~l~~~  114 (130)
T 2lst_A           84 FLVPKAGAW--EEVGRLFGSRPRAEFLKELRQV  114 (130)
Confidence            99  44531  0035688999999999998776

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.20  E-value=1.2e-10  Score=125.29  Aligned_cols=208  Identities=11%  Similarity=0.123  Sum_probs=146.3

Q ss_pred             eEEEecC-CCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171          137 AFNVVTS-EDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V  214 (658)
                      .|..++. +++++.+. ++++++|-||++||+   ...+.|.++|..+.+...||.+++.   .   +|++++      |
T Consensus       126 ~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------v  190 (367)
T 3us3_A          126 PVELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATFDS---K---VAKKLT------L  190 (367)
T ss_dssp             SEEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTTSCEEEECCH---H---HHHHHT------C
T ss_pred             CcEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCCcEEEEECCH---H---HHHHcC------C
Confidence            3667754 77888886 789999999999865   6678999999999988899998765   3   888988      7


Q ss_pred             eeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCC---
Q 006171          215 RGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGE---  290 (658)
Q Consensus       215 ~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~---  290 (658)
                      ++ |+|++|+++..   ....|.|. ++.++|.+|+...  .+|.+..++.++....| ... ...+.+++|.+...   
T Consensus       191 ~~-p~i~lf~~~~~---~~~~y~g~~~~~~~l~~fi~~~--~~p~v~elt~~~~~~~~-~~~-~~~~~~~~f~~~~~~~~  262 (367)
T 3us3_A          191 KL-NEIDFYEAFME---EPVTIPDKPNSEEEIVNFVEEH--RRSTLRKLKPESMYETW-EDD-MDGIHIVAFAEEADPDG  262 (367)
T ss_dssp             CT-TCEEEECTTCS---SCEECSSSSCCHHHHHHHHHHT--CSCSEEECCGGGHHHHH-HSC-BTTEEEEEECCTTSHHH
T ss_pred             CC-CeEEEEcCCCC---CCeecCCCCCCHHHHHHHHHHc--CccceeecChhhHHHHH-hhc-cCCcEEEEEEcCCChhH
Confidence            65 99999998543   35789995 9999999999987  46766667766633333 221 12344555654221   


Q ss_pred             -CCcHHHHHHHHhhcc--CceEEEEEeccccc--HhHHhhcCCC-CCCEEEEEeCCCCCeee--ec---CCCChHHHHHH
Q 006171          291 -RASPFVRQISRNYWA--YASFAFVLWREEES--SIWWNTFEVE-SAPAIVFLKDPGVKPVV--YY---GSFNNSRLSEV  359 (658)
Q Consensus       291 -~~~~~~~~~A~~~~~--~~~f~~v~~~~~~s--~~l~~~f~V~-~~Ptlvlfk~~~~~p~~--y~---g~~~~~~L~~f  359 (658)
                       .....++.+|..|++  .+.|+++.......  +.+.+.||+. .+|+++++...+.....  +.   +.++.+.|.+|
T Consensus       263 ~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F  342 (367)
T 3us3_A          263 YEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDW  342 (367)
T ss_dssp             HHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHHHHHH
Confidence             112345668999987  68888886443211  1124569998 79999999865432222  33   36899999999


Q ss_pred             HHhhccCC
Q 006171          360 MEQNKLQE  367 (658)
Q Consensus       360 i~~~~~~~  367 (658)
                      ++...-..
T Consensus       343 ~~~~~~Gk  350 (367)
T 3us3_A          343 LEDVLEGE  350 (367)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHcCC
Confidence            98754443

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.11  E-value=2.1e-11  Score=116.10  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=79.6

Q ss_pred             EEecCCCCCccc----cCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccchhhh-----------
Q 006171          139 NVVTSEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLAT-----------  200 (658)
Q Consensus       139 ~~Lt~~nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~~~~-----------  200 (658)
                      ..++..+|++.+    ..+++++|.|||+||++|+.+.+..   .++.+.++..+.+..||++++....           
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTE  108 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchh
Confidence            446677887777    3689999999999999999986655   6777777666789999998543210           


Q ss_pred             -----------HH-HhhCCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCC-HhHHHHHHHHh
Q 006171          201 -----------HL-AERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELS-VDAVTDWFATA  252 (658)
Q Consensus       201 -----------~L-c~k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs-~~~Lv~fv~k~  252 (658)
                                 .+ +++++      |.++||+++| ++|..    ...+.|.++ .+.+.+++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~------v~~~Pt~~lid~~G~~----~~~~~G~~~~~~~l~~~l~~~  164 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFG------ANAQPFYVLIDNEGNP----LNKSYAYDEDISKYINFLQTG  164 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHS------CCCSSEEEEECTTSCB----SSCCBCSCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHcC------CCCcceEEEECCCCCE----EeeccCCCCCHHHHHHHHHHH
Confidence                       01 56666      8899999999 66643    456679998 99999999876

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.11  E-value=1.1e-09  Score=111.42  Aligned_cols=212  Identities=14%  Similarity=0.208  Sum_probs=144.9

Q ss_pred             eEEEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|..|++ ++++.++.++++++|-|+++|   |....+.|.++|..+.+...+|.+.-.      .++++++      ++
T Consensus         7 ~v~~l~s~~~~~~~l~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~~~~F~~~~~~------~v~~~~~------~~   71 (252)
T 2h8l_A            7 ASVPLRTEEEFKKFISDKDASIVGFFDDS---FSEAHSEFLKAASNLRDNYRFAHTNVE------SLVNEYD------DN   71 (252)
T ss_dssp             CEEECCSHHHHHHHHTSSSCEEEEEESCT---TSHHHHHHHHHHHHTTTTSCEEEECCH------HHHHHHC------SS
T ss_pred             CceeecCHHHHHHHhhcCCeEEEEEECCC---CChHHHHHHHHHHhcccCcEEEEEChH------HHHHHhC------CC
Confidence            3677854 556666788889999999998   456788999999999888899888533      3888888      77


Q ss_pred             eeeEEEEcCCCCCC---CCCcccc-cCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCC
Q 006171          216 GLPSLVAFPPGCKS---SDCMTRF-EGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER  291 (658)
Q Consensus       216 ~yPTl~~f~~g~~~---~~~~~~Y-~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~  291 (658)
                      + |+|++|+++...   ......| .|.++.++|.+|+...  .+|.+..++.++ ...+. +   ....++++....+.
T Consensus        72 ~-p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~--~~Plv~e~t~~n-~~~~~-~---~~~~v~~~~~~~~~  143 (252)
T 2h8l_A           72 G-EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN--IFGICPHMTEDN-KDLIQ-G---KDLLIAYYDVDYEK  143 (252)
T ss_dssp             S-EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHH--SSCSSCEECTTT-HHHHS-S---SSEEEEEECCBTTT
T ss_pred             C-CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhc--ccCCeeeccccc-Hhhhc-C---CCeEEEEeecchhh
Confidence            7 999999864100   0134689 9999999999999987  478777777766 34442 1   22444444321111


Q ss_pred             C-------cHHHHHHHHhhccC---ceEEEEEecccccHhHHhhcCC--C--CCCEEEEEeCCCCCeeeecCCCChHH--
Q 006171          292 A-------SPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEV--E--SAPAIVFLKDPGVKPVVYYGSFNNSR--  355 (658)
Q Consensus       292 ~-------~~~~~~~A~~~~~~---~~f~~v~~~~~~s~~l~~~f~V--~--~~Ptlvlfk~~~~~p~~y~g~~~~~~--  355 (658)
                      .       ...++.+|..|++.   +.|+++...  +...+.+.||+  .  ..|+|+++...+.+ ..+.+.++.+.  
T Consensus       144 ~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~--~~~~~~~~fgl~~~~~~~P~v~i~~~~~~k-y~~~~~~t~~~~~  220 (252)
T 2h8l_A          144 NAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRK--TFSHELSDFGLESTAGEIPVVAIRTAKGEK-FVMQEEFSRDGKA  220 (252)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETT--TTHHHHGGGTCCCCSCSSCEEEEECTTSCE-EECCSCCCTTSHH
T ss_pred             cchhHHHHHHHHHHHHHHccccCceEEEEEEchH--HHHHHHHHcCCCCccCCCCEEEEEeCcCcE-ecCCcccCcchHH
Confidence            1       12334488899877   888888643  23558899999  3  48999999653332 23567788788  


Q ss_pred             HHHHHHhhccCCC-ccccCc
Q 006171          356 LSEVMEQNKLQEL-PQLRSV  374 (658)
Q Consensus       356 L~~fi~~~~~~~v-P~lts~  374 (658)
                      |.+|++...-..+ |.+-|+
T Consensus       221 i~~F~~~~~~Gkl~~~~kSe  240 (252)
T 2h8l_A          221 LERFLQDYFDGNLKRYLKSE  240 (252)
T ss_dssp             HHHHHHHHHHTCSCCCC---
T ss_pred             HHHHHHHHHCCCccccccCC
Confidence            9999988654433 333343

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.09  E-value=5.6e-11  Score=97.22  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      .|.||++||++|+.+.|.++++++++.+...+..||   +   ..++++++      |+++||+++  +|..     . +
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~---~~~~~~~~------v~~~Pt~~~--~G~~-----~-~   62 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---E---MDQILEAG------LTALPGLAV--DGEL-----K-I   62 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---S---HHHHHHHT------CSSSSCEEE--TTEE-----E-E
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---C---HHHHHHCC------CCcCCEEEE--CCEE-----E-E
Confidence            589999999999999999999999998767888888   2   24889998      889999998  5532     2 2


Q ss_pred             cCCC-CHhHHHHHH
Q 006171          237 EGEL-SVDAVTDWF  249 (658)
Q Consensus       237 ~G~r-s~~~Lv~fv  249 (658)
                      .|.. +.+.|.+|+
T Consensus        63 ~G~~~~~~~l~~~l   76 (77)
T 1ilo_A           63 MGRVASKEEIKKIL   76 (77)
T ss_dssp             CSSCCCHHHHHHHC
T ss_pred             cCCCCCHHHHHHHh
Confidence            3887 899988874

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.08  E-value=1.5e-11  Score=117.02  Aligned_cols=98  Identities=16%  Similarity=0.127  Sum_probs=74.8

Q ss_pred             CCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEc-C
Q 006171          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF-P  224 (658)
Q Consensus       146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f-~  224 (658)
                      |+.....+++++|.|||+||++|+.+.|.|+++++..+..+.|..|||+++..  .++.++++.    +.++||+++| +
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~--~~~~~~~~~----~~~~Pt~~~~d~  112 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE--PKDEDFSPD----GGYIPRILFLDP  112 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGS--CSCGGGCTT----CSCSSEEEEECT
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCch--HHHHHhccc----CCcCCeEEEECC
Confidence            33333578999999999999999999999999887766557899999995432  156677633    4679999999 6


Q ss_pred             CCCCCCCCcccccCC----------CCHhHHHHHHHHhh
Q 006171          225 PGCKSSDCMTRFEGE----------LSVDAVTDWFATAI  253 (658)
Q Consensus       225 ~g~~~~~~~~~Y~G~----------rs~~~Lv~fv~k~v  253 (658)
                      +|..    ...+.|.          .+.+.|++++.+.+
T Consensus       113 ~G~~----~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          113 SGKV----HPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             TSCB----CTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCCE----EEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            7754    3445663          78899999998763

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.06  E-value=2.1e-11  Score=109.21  Aligned_cols=89  Identities=19%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-----cceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-----ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-----~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      +....||+|||+||++|+.+.|.   ++..++..     ..+.+||.+++. ...++.+++      |.+.|||++|.+|
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~---i~~~~~~~a~~~~~~l~~vdv~~~~-~~~la~~~~------V~g~PT~i~f~~G   86 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAE---IAPQYPLTDEGRAAPVQRLQMRDPL-PPGLELARP------VTFTPTFVLMAGD   86 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHH---TTTTGGGSHHHHHSCEEEEETTSCC-CTTCBCSSC------CCSSSEEEEEETT
T ss_pred             cCCCEEEEEECCCCHHHHHHHHH---HHhhHHHhhhcccceEEEEECCCCC-chhHHHHCC------CCCCCEEEEEECC
Confidence            45789999999999999998753   33333322     578899988652 134777777      8899999999988


Q ss_pred             CCCCCCcccccCCCCHhHHHHHHHHhhc
Q 006171          227 CKSSDCMTRFEGELSVDAVTDWFATAIL  254 (658)
Q Consensus       227 ~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~  254 (658)
                      ..    ..+..|....+.+..|+.+.+.
T Consensus        87 ~e----v~Ri~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           87 VE----SGRLEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             EE----EEEEECCCCHHHHHHHHHHHHH
T ss_pred             EE----EeeecCCCCHHHHHHHHHHHHh
Confidence            54    4678999999999999987643

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.05  E-value=2.3e-11  Score=107.82  Aligned_cols=100  Identities=11%  Similarity=0.106  Sum_probs=79.8

Q ss_pred             EEEec-CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhh-hHHHhhCCCCccccee
Q 006171          138 FNVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRR  215 (658)
Q Consensus       138 V~~Lt-~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~-~~Lc~k~~i~k~f~V~  215 (658)
                      ...|+ .++|++++.++++++|.|+|.|||.|+.+.|.++++++.  +.+.+..||.++++.. ..+|++++      |+
T Consensus         8 ~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~------V~   79 (112)
T 3iv4_A            8 AIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTN------VK   79 (112)
T ss_dssp             EEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHT------CC
T ss_pred             eeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhC------Cc
Confidence            45664 467988887799999999999999999999999999984  5679999999976543 34899999      99


Q ss_pred             e-eeEEEEcCCCCCCCCCcccccCCCCHhHHHHH
Q 006171          216 G-LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW  248 (658)
Q Consensus       216 ~-yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~f  248 (658)
                      + .||+++|++|..   ....-.|..+.++|.+.
T Consensus        80 h~sPq~il~k~G~~---v~~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           80 HESPQAFYFVNGEM---VWNRDHGDINVSSLAQA  110 (112)
T ss_dssp             CCSSEEEEEETTEE---EEEEEGGGCSHHHHHHH
T ss_pred             cCCCeEEEEECCEE---EEEeeccccCHHHHHHh
Confidence            5 999999999964   22223467777777654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.03  E-value=2e-10  Score=107.80  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=77.6

Q ss_pred             CCCCccc----cCCCcEEEEEe-ccCCCCCCCChHHH---HHHHHHhhcccceeeeecccch--------hhhHHHhhCC
Q 006171          144 EDFPSIF----HDSKPWLIQVY-SDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIR--------LATHLAERKP  207 (658)
Q Consensus       144 ~nF~~~v----~~~~~~lV~FY-apwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~--------~~~~Lc~k~~  207 (658)
                      .+|++.+    ..+++++|.|| |+||++|+++.|.+   .++++.+...+.+..||+++..        ....++++|+
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~  113 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK  113 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC
Confidence            4455555    25789999999 99999999999999   7887766556788999998542        2346899998


Q ss_pred             CCcccceeeeeEEEEc-CCCCCCCCCcccccCCC--CHhHHHHHHHHh
Q 006171          208 IGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (658)
Q Consensus       208 i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~r--s~~~Lv~fv~k~  252 (658)
                            |.++||+++| ++|..    ...+ |..  +.+.+.+++.+.
T Consensus       114 ------v~~~Pt~~~~d~~G~~----~~~~-G~~~~~~~~l~~~l~~~  150 (154)
T 2ju5_A          114 ------VTGFPELVFIDAEGKQ----LARM-GFEPGGGAAYVSKVKSA  150 (154)
T ss_dssp             ------CCSSSEEEEECTTCCE----EEEE-CCCTTCHHHHHHHHHHH
T ss_pred             ------CCCCCEEEEEcCCCCE----EEEe-cCCCCCHHHHHHHHHHH
Confidence                  8899999999 56643    4556 887  899999998776

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.99  E-value=4.3e-10  Score=102.91  Aligned_cols=103  Identities=15%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             EecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-----------------------
Q 006171          140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-----------------------  196 (658)
Q Consensus       140 ~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-----------------------  196 (658)
                      .++.+.+....-.+++++|.||++||++|+.+.|.++++++++.+.+.+..|+++..                       
T Consensus        16 ~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (148)
T 2b5x_A           16 WLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIF   95 (148)
T ss_dssp             EESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEE
T ss_pred             cccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceE
Confidence            355555543334678999999999999999999999999999987688999997531                       


Q ss_pred             -hhhhHHHhhCCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          197 -RLATHLAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       197 -~~~~~Lc~k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       .....+++.++      |.++||++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus        96 ~d~~~~~~~~~~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  143 (148)
T 2b5x_A           96 VDSDHALTDAFE------NEYVPAYYVFDKTGQL----RHFQAGGSGMKMLEKRVNRV  143 (148)
T ss_dssp             ECSSCHHHHHTC------CCCSSEEEEECTTCBE----EEEEESCSTTHHHHHHHHHH
T ss_pred             ECCchhHHHHhC------CCCCCEEEEECCCCcE----EEEecCCCCHHHHHHHHHHH
Confidence             11235788888      8899999999 55542    45678989999999998876

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.97  E-value=4.5e-10  Score=101.34  Aligned_cols=89  Identities=13%  Similarity=0.099  Sum_probs=73.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-------------------hhhHHHhhCCCCccc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-------------------LATHLAERKPIGQIF  212 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-------------------~~~~Lc~k~~i~k~f  212 (658)
                      .+++++|.||++||++|+...|.++++++++. .+.+..|+++++.                   ....++++++     
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----   96 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN-----   96 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT-----
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcC-----
Confidence            57899999999999999999999999999997 5689999997521                   0245778887     


Q ss_pred             ceeeeeEEEEcC-CCCCCCCCccccc---CCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFP-PGCKSSDCMTRFE---GELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~-~g~~~~~~~~~Y~---G~rs~~~Lv~fv~k~  252 (658)
                       |.++||++++. +|..    . .|.   |..+.+.|.+++.+.
T Consensus        97 -i~~~P~~~lid~~G~i----~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           97 -VPWQPAFVFYRADGTS----T-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             -CCSSSEEEEECTTSCE----E-EECCSSSCCCHHHHHHHHHHC
T ss_pred             -CCCCCEEEEECCCCcE----E-EEEcCCCccCHHHHHHHHHHH
Confidence             88999999994 5532    3 678   999999999998765

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.95  E-value=5.9e-10  Score=100.29  Aligned_cols=90  Identities=14%  Similarity=0.006  Sum_probs=73.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------------------hhhHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------------------~~~~Lc~k~~i~k~  211 (658)
                      .+++++|.||++||++|+.+.|.++++++++. .+.+..|++++..                    ....++++++    
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----   98 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFG----   98 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTT----
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcC----
Confidence            57899999999999999999999999999987 5689999986421                    1234777777    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||++++.+++.   .. .|.|..+.+.|.+++.+.
T Consensus        99 --i~~~P~~~~id~~g~---i~-~~~g~~~~~~l~~~l~~~  133 (136)
T 1zzo_A           99 --VTQQPAYAFVDPHGN---VD-VVRGRMSQDELTRRVTAL  133 (136)
T ss_dssp             --CCSSSEEEEECTTCC---EE-EEESCCCHHHHHHHHHHH
T ss_pred             --CCCCceEEEECCCCC---EE-EEecCCCHHHHHHHHHHH
Confidence              889999999954333   23 789999999999998876

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.95  E-value=8.2e-09  Score=104.77  Aligned_cols=203  Identities=12%  Similarity=0.090  Sum_probs=138.4

Q ss_pred             EEEecC-CCCCccccC-CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          138 FNVVTS-EDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       138 V~~Lt~-~nF~~~v~~-~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      |..|++ +++++++.+ +++++|-|++++|   ....+.|.++|+.|.+...+|.+.-.      .++++++      ++
T Consensus         8 v~~l~s~~~~~~~~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~~~------~v~~~~~------v~   72 (250)
T 3ec3_A            8 SKEILTLKQVQEFLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTFST------EIAKFLK------VS   72 (250)
T ss_dssp             SEECCCHHHHHHHHHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEECCH------HHHHHHT------CC
T ss_pred             ceecCCHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEECcH------HHHHHcC------CC
Confidence            466754 677777777 8999999999974   57889999999999888899987533      3777887      77


Q ss_pred             eeeEEEEcCCCCCC---CCCccccc--CCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEe--CC
Q 006171          216 GLPSLVAFPPGCKS---SDCMTRFE--GELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFS--KT  288 (658)
Q Consensus       216 ~yPTl~~f~~g~~~---~~~~~~Y~--G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~--~~  288 (658)
                      + |+|++|+++...   ......|.  |.++.++|.+|+...  .+|.+..++.++. .....    .++.+++|.  +.
T Consensus        73 ~-p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~--~~Plv~e~t~~n~-~~~~~----~~~l~~~~~~~d~  144 (250)
T 3ec3_A           73 L-GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKH--ALPLVGHRKTSND-AKRYS----KRPLVVVYYSVDF  144 (250)
T ss_dssp             S-SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHH--SSCTEEEECTTTH-HHHSC----SSSEEEEEECCCC
T ss_pred             C-CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHc--CCCceeecCccch-hhhhc----cCccEEEEEeccc
Confidence            7 999999863100   01246788  589999999999987  4787777777663 33222    234444433  21


Q ss_pred             CCC-------CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCC--C-CEEEEEeCCCCCeeeec-CCCChHHHH
Q 006171          289 GER-------ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--A-PAIVFLKDPGVKPVVYY-GSFNNSRLS  357 (658)
Q Consensus       289 ~~~-------~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~--~-Ptlvlfk~~~~~p~~y~-g~~~~~~L~  357 (658)
                      .+.       ....++.+|..|+ .+.|+++...+  .....+.||+..  . |.++++...+.+ ..+. +.++.+.|.
T Consensus       145 ~~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~--~~~~l~~fgl~~~~~~p~~~~~~~~~~k-y~~~~~~~t~~~i~  220 (250)
T 3ec3_A          145 SFDYRTATQFWRNKVLEVAKDFP-EYTFAIADEED--YATEVKDLGLSESGGDVNAAILDESGKK-FAMEPEEFDSDALR  220 (250)
T ss_dssp             STTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTT--THHHHHHTTCSSCSCSCEEEEECTTSCE-EECCCCSCCHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHH--HHHHHHHcCCCccCCCcEEEEEcCCCce-ecCCcccCCHHHHH
Confidence            111       1233455888898 88888875322  345678999974  3 577777543332 2234 678999999


Q ss_pred             HHHHhhccCC
Q 006171          358 EVMEQNKLQE  367 (658)
Q Consensus       358 ~fi~~~~~~~  367 (658)
                      +|++...-..
T Consensus       221 ~Fv~~~~~Gk  230 (250)
T 3ec3_A          221 EFVMAFKKGK  230 (250)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHCCC
Confidence            9998764443

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.94  E-value=1e-10  Score=121.32  Aligned_cols=77  Identities=10%  Similarity=-0.020  Sum_probs=61.0

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc-c--hhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD-I--RLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e-~--~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      ..+|+||||||+||++++|.|+++|+++      ..|||+. +  ....++|++++      |+++||+++  +|     
T Consensus       199 ~~vV~F~A~WC~~Ck~l~p~le~lA~~l------~~Vd~d~~d~~~~~~~la~~~g------I~~vPT~~i--~G-----  259 (291)
T 3kp9_A          199 IGGTMYGAYWCPHCQDQKELFGAAFDQV------PYVECSPNGPGTPQAQECTEAG------ITSYPTWII--NG-----  259 (291)
T ss_dssp             TTCEEEECTTCHHHHHHHHHHGGGGGGS------CEEESCSSCSSSCCCHHHHTTT------CCSTTEEEE--TT-----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHc------CEEEEeecCchhhHHHHHHHcC------CcccCeEEE--CC-----
Confidence            3479999999999999999999998655      3677772 1  11356999999      889999655  55     


Q ss_pred             CcccccCCCCHhHHHHHHHHh
Q 006171          232 CMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        ..|.|.++.++|.+|+.-.
T Consensus       260 --~~~~G~~~~~~L~~~l~~~  278 (291)
T 3kp9_A          260 --RTYTGVRSLEALAVASGYP  278 (291)
T ss_dssp             --EEEESCCCHHHHHHHTCCC
T ss_pred             --EEecCCCCHHHHHHHHCCC
Confidence              3489999999999997543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.89  E-value=1.2e-09  Score=99.58  Aligned_cols=88  Identities=9%  Similarity=0.127  Sum_probs=71.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-ccceeeeecccch----------------------hhhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIR----------------------LATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-~~~vg~Vdc~e~~----------------------~~~~Lc~k~~i  208 (658)
                      .+++++|.||++||++|+.+.|.++++++++.. .+.+..|+++...                      ....+++.++ 
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH-  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC-
Confidence            678999999999999999999999999999973 4588999986310                      1235888888 


Q ss_pred             CcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          209 GQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                           |.++|+++++ ++|..    ...|.|..+.+.|.+++
T Consensus       112 -----v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 -----IITIPTSFLLNEKGEI----EKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             -----CCEESEEEEECTTCCE----EEEEESCCCHHHHHHHH
T ss_pred             -----cCccCeEEEEcCCCcE----EEEEcCCcCHHHHHHhh
Confidence                 8899999999 55543    45788999999998876

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.89  E-value=1.5e-09  Score=100.61  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=74.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCC---------------cccc--
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIG---------------QIFF--  213 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~---------------k~f~--  213 (658)
                      .+++++|.||++||++|+...|.++++++++++. +.|..|+++........++++++.               +.|.  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            4689999999999999999999999999999654 489999997544333333333221               1233  


Q ss_pred             eeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |.++|+++++ ++|..    ...|.|..+.+.|.+++.+.
T Consensus       103 v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  138 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGY----RQTITGEVNEKSLTDAVKLA  138 (151)
T ss_dssp             SCCSSEEEEEETTTTE----EEECCSCCCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcE----EEEECCCCCHHHHHHHHHHH
Confidence            7899999988 55542    46789999999999999876

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.89  E-value=6.5e-10  Score=104.10  Aligned_cols=101  Identities=16%  Similarity=0.101  Sum_probs=74.5

Q ss_pred             EEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceee---------------------------
Q 006171          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGM---------------------------  190 (658)
Q Consensus       139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~---------------------------  190 (658)
                      ..++.+.+......+++++|.||++||++|+.+.|.+++++++++.. +.|..                           
T Consensus        24 ~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (164)
T 2h30_A           24 KTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKL  103 (164)
T ss_dssp             EETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTS
T ss_pred             CCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcc
Confidence            34444444433346789999999999999999999999999886432 23333                           


Q ss_pred             -eecccchhhhHHHhhCCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          191 -VELGDIRLATHLAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       191 -Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       ++++.   ...++++++      |.++||++++ ++|..    ...|.|..+.+.|.+++.+.
T Consensus       104 ~~~~d~---~~~~~~~~~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~~  154 (164)
T 2h30_A          104 PVVTDN---GGTIAQNLN------ISVYPSWALIGKDGDV----QRIVKGSINEAQALALIRNP  154 (164)
T ss_dssp             CEEECT---TCHHHHHTT------CCSSSEEEEECTTSCE----EEEEESCCCHHHHHHHHHCT
T ss_pred             eEEEcC---chHHHHHcC------CCccceEEEECCCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence             44442   234888888      8899999999 56643    45678999999999999876

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.82  E-value=1.6e-09  Score=101.88  Aligned_cols=96  Identities=9%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             CCCccc----cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccceeeeeE
Q 006171          145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       145 nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      +|+..+    .+++++||.|||+||++|+.+.|.+.+.....+-. ..+..|+++++.  ..++.+++      |.++||
T Consensus        32 ~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~--~~~~~~~~------v~~~PT  103 (151)
T 3ph9_A           32 TYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHET--TDKNLSPD------GQYVPR  103 (151)
T ss_dssp             SHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCC--SCGGGCTT------CCCSSE
T ss_pred             CHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCc--hhhHhhcC------CCCCCE
Confidence            455554    36899999999999999999999998753221111 367778876321  12556666      889999


Q ss_pred             EEEcC-CCCCCCCCcccccCC----------CCHhHHHHHHHHh
Q 006171          220 LVAFP-PGCKSSDCMTRFEGE----------LSVDAVTDWFATA  252 (658)
Q Consensus       220 l~~f~-~g~~~~~~~~~Y~G~----------rs~~~Lv~fv~k~  252 (658)
                      +++|. +|..    .....|.          .+.+.+++.+++.
T Consensus       104 ~~f~~~~G~~----v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a  143 (151)
T 3ph9_A          104 IMFVDPSLTV----RADIAGRYSNRLYTYEPRDLPLLIENMKKA  143 (151)
T ss_dssp             EEEECTTSCB----CTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred             EEEECCCCCE----EEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence            99998 5543    3444565          3455666666655

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.79  E-value=5.5e-09  Score=96.51  Aligned_cols=91  Identities=11%  Similarity=0.183  Sum_probs=74.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-------------------hhHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------ATHLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-------------------~~~Lc~k~~i~k~  211 (658)
                      .+++++|.||++||++|+.+.|.++++++.+.+. +.|..|++++...                   ...+++.++    
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  100 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD----  100 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTT----
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcC----
Confidence            4689999999999999999999999999999874 5889999874310                   234777787    


Q ss_pred             cceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||++++ ++|..    ...|.|..+.+.|.+++.+.
T Consensus       101 --v~~~P~~~lid~~G~i----~~~~~G~~~~~~l~~~l~~l  136 (151)
T 2f9s_A          101 --VSPLPTTFLINPEGKV----VKVVTGTMTESMIHDYMNLI  136 (151)
T ss_dssp             --CCSSCEEEEECTTSEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             --CCCCCeEEEECCCCcE----EEEEeCCCCHHHHHHHHHHH
Confidence              8899999998 55543    45678999999999999887

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.79  E-value=7.1e-09  Score=94.82  Aligned_cols=91  Identities=8%  Similarity=-0.045  Sum_probs=69.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-hhH---------------------HHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-ATH---------------------LAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-~~~---------------------Lc~k~~i  208 (658)
                      .+++++|.||++||++|+...|.+.++++.+.+. +.+..|+++++.. ...                     +++.++ 
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD-  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC-
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC-
Confidence            5689999999999999999999999999999876 5899999984321 112                     555555 


Q ss_pred             CcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          209 GQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                           |.++|+++++ ++|..    ...+.|..+.+.+++.+.+.
T Consensus       109 -----i~~~P~~~lid~~G~i----~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A          109 -----IYATPVLYVLDKNKVI----IAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             -----CCSSCEEEEECTTCBE----EEESCCGGGHHHHHHHHHHH
T ss_pred             -----cCCCCEEEEECCCCcE----EEecCCHHHHHHHHHHHHHH
Confidence                 8899999999 55542    45567777777777666544

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.78  E-value=4.1e-09  Score=98.58  Aligned_cols=98  Identities=10%  Similarity=0.087  Sum_probs=73.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-hhHHHhhCCCC-----------ccc------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-ATHLAERKPIG-----------QIF------  212 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-~~~Lc~k~~i~-----------k~f------  212 (658)
                      .+++++|.||++||++|+.+.|.+.++++++.+. +.+..|++++... .....+++++.           +.|      
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            5689999999999999999999999999999876 5899999985432 12222222110           000      


Q ss_pred             ceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          213 FRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       213 ~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      .|.++|+++++ ++|..    ...|.|..+.+.|.+++.+.+
T Consensus       113 ~i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~l  150 (165)
T 3or5_A          113 GITGIPTSFVIDASGNV----SGVIVGPRSKADFDRIVKMAL  150 (165)
T ss_dssp             CSCSSSEEEEECTTSBE----EEEECSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcE----EEEEcCCCCHHHHHHHHHHHH
Confidence            28899999888 55532    456789999999999998873

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.78  E-value=6.9e-10  Score=106.59  Aligned_cols=75  Identities=17%  Similarity=0.267  Sum_probs=60.1

Q ss_pred             CCCCccccCCCcEEEEEeccCCCCCCCChH-HH--HHHHHHhhcccceeeeecccchhhhHHHhhC--------CCCccc
Q 006171          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIF  212 (658)
Q Consensus       144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P-~w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~--------~i~k~f  212 (658)
                      +.|+.....++++||.|||+||++|+.++| .|  .++++.+.+.+.+.+||.++++.   +++.+        +     
T Consensus        30 ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~---l~~~y~~~~q~~~g-----  101 (173)
T 3ira_A           30 EAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPD---IDNIYMTVCQIILG-----  101 (173)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHH---HHHHHHHHHHHHHS-----
T ss_pred             HHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCc---HHHHHHHHHHHHcC-----
Confidence            445555567899999999999999999999 45  57888888777889999996543   66666        6     


Q ss_pred             ceeeeeEEEEcCCCC
Q 006171          213 FRRGLPSLVAFPPGC  227 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~  227 (658)
                       |.|+||+++|.+++
T Consensus       102 -v~g~Pt~v~l~~dG  115 (173)
T 3ira_A          102 -RGGWPLNIIMTPGK  115 (173)
T ss_dssp             -CCCSSEEEEECTTS
T ss_pred             -CCCCcceeeECCCC
Confidence             88999999997443

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.76  E-value=1.1e-08  Score=93.62  Aligned_cols=88  Identities=13%  Similarity=0.052  Sum_probs=69.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHh-hcc-cceeeeecccchh----------------------hhHHHhhCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL-EGI-ANTGMVELGDIRL----------------------ATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l-~g~-~~vg~Vdc~e~~~----------------------~~~Lc~k~~  207 (658)
                      .+++++|.||++||++|+...|.+.++++.+ .+. +.+..|+++....                      ...+++.++
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4689999999999999999999999999999 665 5888898875321                      345888888


Q ss_pred             CCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          208 IGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       208 i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                            |.++||++++ ++|.      ..+... +.+.+.+++.+.
T Consensus       112 ------v~~~P~~~lid~~G~------i~~~~~-~~~~l~~~l~~l  144 (148)
T 3fkf_A          112 ------ILTLPTNILLSPTGK------ILARDI-QGEALTGKLKEL  144 (148)
T ss_dssp             ------CCSSSEEEEECTTSB------EEEESC-CHHHHHHHHHHH
T ss_pred             ------CCCcCEEEEECCCCe------EEEecC-CHHHHHHHHHHH
Confidence                  8899999999 4553      223333 788888888765

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.76  E-value=1.3e-08  Score=93.78  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=73.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh--------------------hhHHHhhCCCCc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL--------------------ATHLAERKPIGQ  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~--------------------~~~Lc~k~~i~k  210 (658)
                      .+++++|.||++||++|+...|.++++++.+.+. +.+..|+++.+..                    ...+++.++   
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  105 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL---  105 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT---
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC---
Confidence            4689999999999999999999999999999775 5899999885431                    124777777   


Q ss_pred             ccceeeeeEEEEcC-CCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~-~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |.++|+++++. +|..    ...+.|..+.+.|.+++.+.
T Consensus       106 ---v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  141 (152)
T 2lja_A          106 ---INGIPRFILLDRDGKI----ISANMTRPSDPKTAEKFNEL  141 (152)
T ss_dssp             ---CCSSCCEEEECTTSCE----EESSCCCTTCHHHHHHHHHH
T ss_pred             ---cCCCCEEEEECCCCeE----EEccCCCCCHHHHHHHHHHH
Confidence               88999999997 4532    45567888899999998876

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.74  E-value=1.3e-08  Score=93.89  Aligned_cols=92  Identities=14%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccch--------------------hhhHHHhhCCCCc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR--------------------LATHLAERKPIGQ  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~--------------------~~~~Lc~k~~i~k  210 (658)
                      .+++++|.||++||++|+...|.++++++.+++. +.|..|+.+.+.                    ....+++.++   
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  103 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFG---  103 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHT---
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcC---
Confidence            5789999999999999999999999999999875 466665532100                    1234777887   


Q ss_pred             ccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          211 IFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       211 ~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                         |.++||++++ ++|..    ...|.|..+.+.|.+++.+.+
T Consensus       104 ---i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~ll  140 (153)
T 2l5o_A          104 ---TQVYPTSVLIGKKGEI----LKTYVGEPDFGKLYQEIDTAW  140 (153)
T ss_dssp             ---CCSSSEEEEECSSSCC----CEEEESSCCHHHHHHHHHHHH
T ss_pred             ---CCccCeEEEECCCCcE----EEEEcCCCCHHHHHHHHHHHH
Confidence               8899999999 55543    456889999999999998763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.73  E-value=6.6e-09  Score=93.08  Aligned_cols=90  Identities=14%  Similarity=0.047  Sum_probs=69.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-------------------------hhhhHHHhhC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-------------------------RLATHLAERK  206 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-------------------------~~~~~Lc~k~  206 (658)
                      .+++++|.||++||++|+...|.++++++++...+.+..|++...                         .....+++.+
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            578999999999999999999999999998665567777754210                         0122467777


Q ss_pred             CCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       207 ~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      +      |.++|+++++ ++|..    ...|.|..+.+.|.+++.+
T Consensus       101 ~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A          101 G------VRSYPTQAFIDKEGKL----VKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             T------CCSSSEEEEECTTCCE----EEEEESCCCHHHHHHHHHH
T ss_pred             C------cccCCeEEEECCCCcE----EEeecCCCcHHHHHHHHHh
Confidence            7      8899999999 55543    4678899999999998865

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.72  E-value=6.3e-09  Score=91.83  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=66.2

Q ss_pred             CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCc
Q 006171          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (658)
Q Consensus       154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~  233 (658)
                      ...++.|++|||+.|+.+.|..++++.++.  +.+..||.++++   .++++++      ++ +|+|++|.+|..     
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~---~l~~~yg------v~-VP~l~~~~dG~~-----   91 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNE---HLTRLYN------DR-VPVLFAVNEDKE-----   91 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCH---HHHHHST------TS-CSEEEETTTTEE-----
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCH---HHHHHhC------CC-CceEEEEECCEE-----
Confidence            367999999999999999999999998874  789999999654   4888998      86 999999998853     


Q ss_pred             ccccCCCCHhHHHHHH
Q 006171          234 TRFEGELSVDAVTDWF  249 (658)
Q Consensus       234 ~~Y~G~rs~~~Lv~fv  249 (658)
                      . +.|..+.+.|.+|+
T Consensus        92 v-~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           92 L-CHYFLDSDVIGAYL  106 (107)
T ss_dssp             E-ECSSCCCHHHHHHH
T ss_pred             E-EecCCCHHHHHHHh
Confidence            2 46888889998886

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.71  E-value=1.4e-07  Score=101.61  Aligned_cols=201  Identities=12%  Similarity=0.113  Sum_probs=118.6

Q ss_pred             EEEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      +..++. ++|+. +..++.++|.||+++|..   ..+.|.++|..+.+...++.+.++       ++++++      |++
T Consensus       120 v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~---~~~~f~~~A~~~~~~~~F~~~~~~-------~~~~~~------v~~  182 (382)
T 2r2j_A          120 IQEIRDLAEITT-LDRSKRNIIGYFEQKDSD---NYRVFERVANILHDDCAFLSAFGD-------VSKPER------YSG  182 (382)
T ss_dssp             CEEC-------------CCEEEEEESCSSSH---HHHHHHHHHHHHTTTCEEEEEESC-------C--------------
T ss_pred             ceecCCHHHHHH-hcCCCCEEEEEECCCCCh---hHHHHHHHHHHhhccceEEEEehh-------hHHhhC------CCC
Confidence            455643 56777 667788999999987653   367899999999888888888874       456666      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCC-CHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCC--Cc
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER--AS  293 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~r-s~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~--~~  293 (658)
                      +| +++++.+..  .....|.|.+ +.++|.+|+...  .+|.+..++..+ ...+...   ..+.+++|......  ..
T Consensus       183 ~p-i~~~~~~~~--~~~~~y~g~~~~~~~l~~fi~~~--~~p~v~elt~~~-~~~~~~~---~~~~~v~f~~~~~~~~~~  253 (382)
T 2r2j_A          183 DN-IIYKPPGHS--APDMVYLGAMTNFDVTYNWIQDK--CVPLVREITFEN-GEELTEE---GLPFLILFHMKEDTESLE  253 (382)
T ss_dssp             CE-EEEECSSSS--SCCEECCSCTTCHHHHHHHHHHH--HSCSSEECCHHH-HHHHHTT---CCCEEEEEECTTCCHHHH
T ss_pred             Cc-eEECCCCCC--CcCcccCCCCCCHHHHHHHHHhc--ccCceEecChhh-HHHHhcC---CCcEEEEEecCCchHHHH
Confidence            99 777665332  2347899999 999999999887  367666666655 3444432   23444444432111  11


Q ss_pred             HHHHH---HHHhhccCceEEEEEecccccHhHHhhcCCC--CCCEEEEEeCCCCCeeee---cCCCChHHHHHHHHhhcc
Q 006171          294 PFVRQ---ISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY---YGSFNNSRLSEVMEQNKL  365 (658)
Q Consensus       294 ~~~~~---~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~--~~Ptlvlfk~~~~~p~~y---~g~~~~~~L~~fi~~~~~  365 (658)
                      .+...   .+..+++.+.|+.+...  ....+++.||++  .+|+|+++... .. ..|   .+.++.+.|.+|++...-
T Consensus       254 ~~~~~~~~~~~~~~~~i~f~~id~~--~~~~~~~~~gl~~~~~P~i~i~~~~-~~-y~~~~~~~~~~~~~i~~F~~d~~~  329 (382)
T 2r2j_A          254 IFQNEVARQLISEKGTINFLHADCD--KFRHPLLHIQKTPADCPVIAIDSFR-HM-YVFGDFKDVLIPGKLKQFVFDLHS  329 (382)
T ss_dssp             HHHHHHHHHTGGGTTTSEEEEEETT--TTHHHHHHTTCCGGGCSEEEEECSS-CE-EECCCSGGGGSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCeeEEEEEchH--HhHHHHHHcCCCccCCCEEEEEcch-hc-CCCCccccccCHHHHHHHHHHHHC
Confidence            12222   34456677888888633  235678999997  58999987542 21 112   234456789999887544


Q ss_pred             CCC
Q 006171          366 QEL  368 (658)
Q Consensus       366 ~~v  368 (658)
                      ..+
T Consensus       330 Gkl  332 (382)
T 2r2j_A          330 GKL  332 (382)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            433

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.69  E-value=2.5e-08  Score=91.90  Aligned_cols=91  Identities=12%  Similarity=0.055  Sum_probs=71.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhh-------------------hHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA-------------------THLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~-------------------~~Lc~k~~i~k~  211 (658)
                      .+++++|.||++||++|+...|.+.++++.+.+. +.+..|+++.+...                   ..+++.++    
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  102 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYG----  102 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTT----
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcC----
Confidence            5689999999999999999999999999999876 58889998844311                   14667777    


Q ss_pred             cceeeeeEEEEc-CCCCCCCCCcccccCCC--CHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~r--s~~~Lv~fv~k~  252 (658)
                        |.++|+++++ ++|..    ...+.|..  +.+.|.+++.+.
T Consensus       103 --v~~~P~~~lid~~G~i----~~~~~g~~~~~~~~l~~~i~~~  140 (152)
T 3gl3_A          103 --VKGMPTSFLIDRNGKV----LLQHVGFRPADKEALEQQILAA  140 (152)
T ss_dssp             --CCSSSEEEEECTTSBE----EEEEESCCTTTHHHHHHHHHHH
T ss_pred             --CCCCCeEEEECCCCCE----EEEEccCCCcCHHHHHHHHHHH
Confidence              8899998888 55532    34566754  457999999887

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.66  E-value=2e-08  Score=92.94  Aligned_cols=87  Identities=17%  Similarity=0.128  Sum_probs=71.3

Q ss_pred             CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc---cch---------------------hhhHHHhhCCCC
Q 006171          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG---DIR---------------------LATHLAERKPIG  209 (658)
Q Consensus       154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~---e~~---------------------~~~~Lc~k~~i~  209 (658)
                      ++++|.||++||++|+...|.+.++++++  .+.+..|+++   ...                     ....+++.++  
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK--  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS--
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC--
Confidence            89999999999999999999999999999  5688889982   100                     2345778887  


Q ss_pred             cccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 QIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                          |.++|+++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus       107 ----v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  142 (154)
T 3ia1_A          107 ----VLGQPWTFVVDREGKV----VALFAGRAGREALLDALLLA  142 (154)
T ss_dssp             ----BCSSCEEEEECTTSEE----EEEEESBCCHHHHHHHHHHT
T ss_pred             ----CCcccEEEEECCCCCE----EEEEcCCCCHHHHHHHHHhc
Confidence                8899998887 55543    45778999999999999887

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.63  E-value=3.4e-08  Score=94.50  Aligned_cols=97  Identities=11%  Similarity=0.114  Sum_probs=72.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-c------ceeeeeccc--chhhhHHHhhCCCC------------c
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-A------NTGMVELGD--IRLATHLAERKPIG------------Q  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~------~vg~Vdc~e--~~~~~~Lc~k~~i~------------k  210 (658)
                      .++++||.||++||++|+...|.+++++++++.. +      .|..|++++  .......++++++.            +
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            4689999999999999999999999999999875 5      899999986  23333455554430            0


Q ss_pred             ---ccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 ---IFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ---~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         .|.|.++|+++++ ++|..    ...|.|..+.+.|.+++.+.
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  179 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRP----AAVFLREVTSKDVLDVALPL  179 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCE----EEEECSCCCHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence               1247899976665 55643    45678999999999998776

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.62  E-value=4.8e-08  Score=90.45  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=68.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh----------------------hhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~----------------------~~~Lc~k~~i  208 (658)
                      .+++++|.||++||++|+...|.++++++++.+. +.|..|++++...                      ...+++.++ 
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC-  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC-
Confidence            4689999999999999999999999999999876 5899999885211                      355888888 


Q ss_pred             CcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          209 GQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                           |.++||++++ ++|..    ...+   .+.+.|.+++.+.
T Consensus       107 -----v~~~P~~~lid~~G~i----~~~~---~~~~~l~~~l~~l  139 (152)
T 2lrn_A          107 -----IVGFPHIILVDPEGKI----VAKE---LRGDDLYNTVEKF  139 (152)
T ss_dssp             -----CCSSCEEEEECTTSEE----EEEC---CCTTHHHHHHHHH
T ss_pred             -----CCcCCeEEEECCCCeE----EEee---CCHHHHHHHHHHH
Confidence                 8899999999 55532    2222   3456777777665

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.61  E-value=1.7e-08  Score=94.98  Aligned_cols=89  Identities=17%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------------------hhhHHHhhCCCCc
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIGQ  210 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------------------~~~~Lc~k~~i~k  210 (658)
                      ..+++++|.||++||++|+.+.|.+++++++   .+.+..|++++..                    ....++++++   
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  122 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG---  122 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT---
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC---
Confidence            3678999999999999999999999999876   3577777754211                    1234777777   


Q ss_pred             ccceeeeeE-EEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPS-LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPT-l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |.++|+ +++.++|..    ...+.|..+.+.+.+++.+.
T Consensus       123 ---v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  158 (168)
T 2b1k_A          123 ---VYGAPETFLIDGNGII----RYRHAGDLNPRVWEEEIKPL  158 (168)
T ss_dssp             ---CCSSSEEEEECTTSBE----EEEEESCCCHHHHHHTTHHH
T ss_pred             ---ccccCEEEEECCCCeE----EEEEeCCCCHHHHHHHHHHH
Confidence               889995 455566643    35678999999999888765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.61  E-value=4.4e-08  Score=91.90  Aligned_cols=88  Identities=9%  Similarity=0.107  Sum_probs=69.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc------------------cch-hh-------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG------------------DIR-LA-------------  199 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~------------------e~~-~~-------------  199 (658)
                      .+++++|.||++||++|+...|.+++++++++ .+.|..|+++                  +.. ..             
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            46899999999999999999999999999998 5688888887                  221 11             


Q ss_pred             -----hHHHhhCCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCC-CHhHHHHHHHHh
Q 006171          200 -----THLAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGEL-SVDAVTDWFATA  252 (658)
Q Consensus       200 -----~~Lc~k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~r-s~~~Lv~fv~k~  252 (658)
                           ..+++.|+      |.++||++++ ++|.      ..+.|.. +.+.|.+++.+.
T Consensus       115 ~~~d~~~~~~~~~------v~~~P~~~lid~~G~------i~~~g~~~~~~~l~~~l~~l  162 (165)
T 3ha9_A          115 MVMDDGSLVEKFN------VRSIDYIVIMDKSSN------VLYAGTTPSLGELESVIKSV  162 (165)
T ss_dssp             EEECCSHHHHHTT------CCSSSEEEEEETTCC------EEEEEESCCHHHHHHHHHHC
T ss_pred             EEeChHHHHHHhC------CCCceEEEEEcCCCc------EEEeCCCCCHHHHHHHHHHH
Confidence                 24666776      8899999999 5554      2337888 899999988765

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.60  E-value=3.1e-08  Score=92.11  Aligned_cols=93  Identities=9%  Similarity=-0.004  Sum_probs=71.3

Q ss_pred             CCCcEEEEEeccCCCCCCC-ChHHHHHHHHHhhcc-cceeeeecc-------cchhhh------------------H---
Q 006171          152 DSKPWLIQVYSDGSYLCGQ-FSGAWKTIAALLEGI-ANTGMVELG-------DIRLAT------------------H---  201 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~-l~P~w~~~A~~l~g~-~~vg~Vdc~-------e~~~~~------------------~---  201 (658)
                      .+++++|.||++||++|+. +.|.++++++++++. +.|..|+++       ......                  .   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            5789999999999999999 599999999999875 588888862       111111                  1   


Q ss_pred             ---HHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          202 ---LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       202 ---Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                         +++.|+      |.++|+++++.+.+.   ....|.|..+.+.|.+.+.+.+
T Consensus       109 ~~~~~~~~~------v~~~P~~~lid~~G~---i~~~~~g~~~~~~l~~~i~~ll  154 (160)
T 3lor_A          109 IPSTMKKYR------LEGTPSIILADRKGR---IRQVQFGQVDDFVLGLLLGSLL  154 (160)
T ss_dssp             SCHHHHHTT------CCSSSEEEEECTTSB---EEEEEESCCCHHHHHHHHHHHH
T ss_pred             hhhHHHhcc------cCccceEEEECCCCc---EEEEecCcCCHHHHHHHHHHHH
Confidence               566666      889999999954332   2456789999999999988763

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.59  E-value=2.8e-08  Score=91.89  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=68.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------------------hhhHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------------------~~~~Lc~k~~i~k~  211 (658)
                      .+++++|.||++||++|+.+.|.+++++++  +.+.+..|++++..                    ....+++.++    
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  114 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWG----  114 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTT----
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcC----
Confidence            478999999999999999999999999876  44677777764321                    1234777777    


Q ss_pred             cceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++|+++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus       115 --v~~~P~~~~id~~G~i----~~~~~g~~~~~~l~~~l~~~  150 (156)
T 1kng_A          115 --VYGVPETFVVGREGTI----VYKLVGPITPDNLRSVLLPQ  150 (156)
T ss_dssp             --CCSSCEEEEECTTSBE----EEEEESCCCHHHHHHTHHHH
T ss_pred             --cCccCeEEEEcCCCCE----EEEEeCCCCHHHHHHHHHHH
Confidence              8899976655 66643    35678999999999888765

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.59  E-value=4.5e-08  Score=89.22  Aligned_cols=95  Identities=15%  Similarity=0.202  Sum_probs=67.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHH---HHHHhhcc-cceeeeecccchh-hhHHHhhCCC--------------Cccc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGI-ANTGMVELGDIRL-ATHLAERKPI--------------GQIF  212 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~---~A~~l~g~-~~vg~Vdc~e~~~-~~~Lc~k~~i--------------~k~f  212 (658)
                      .+++++|.||++||++|+...|.+.+   +.+.+++. +.|..|++++... .....+++++              .+.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            46899999999999999999999998   88888765 4888888874322 2223332221              1245


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .|.++||++++...+.     ..+ +..+.+.|.+++.+.
T Consensus       106 ~v~~~P~~~lid~~G~-----i~~-~~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKR-----VIL-KDTSMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECTTCB-----EEE-CSCCHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCC-----EEe-cCCCHHHHHHHHHHH
Confidence            5999999999954433     333 667889999988654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.58  E-value=1.8e-08  Score=96.20  Aligned_cols=70  Identities=10%  Similarity=0.040  Sum_probs=56.1

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK  228 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~  228 (658)
                      .+++++|.|||+||++|+.+.|.+++++..+. .+.|..||.++++   .+++++..   ..|.++||+++|.+|+.
T Consensus        53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~---~~~~~~~~---~~v~~iPt~i~~~~~G~  122 (167)
T 1z6n_A           53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAE---DDLRQRLA---LERIAIPLVLVLDEEFN  122 (167)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHH---HHTTTTTT---CSSCCSSEEEEECTTCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCH---HHHHHHHH---cCCCCcCeEEEECCCCC
Confidence            46789999999999999999999999998764 4688899988543   46666631   12789999999998643

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.58  E-value=3.7e-08  Score=90.16  Aligned_cols=92  Identities=11%  Similarity=0.139  Sum_probs=64.1

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHH---HHHHhhcc-cceeeeecccchhh-hHHHhhCC--------------CCcccc
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGI-ANTGMVELGDIRLA-THLAERKP--------------IGQIFF  213 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~---~A~~l~g~-~~vg~Vdc~e~~~~-~~Lc~k~~--------------i~k~f~  213 (658)
                      +++++|.|||+||++|+...|.+.+   +.+.+++. +.|..|+.++.... ....++++              +.+.|.
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            5899999999999999999999999   99998754 47778888754221 11112221              123455


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~  250 (658)
                      |.++||++++...+.     ..+.+ .+.+.|.+|+.
T Consensus       111 v~~~P~~~lid~~G~-----i~~~~-~~~~~l~~~l~  141 (142)
T 3eur_A          111 LRAIPTLYLLDKNKT-----VLLKD-ATLQKVEQYLA  141 (142)
T ss_dssp             CTTCSEEEEECTTCB-----EEEEE-ECHHHHHHHHH
T ss_pred             CCcCCeEEEECCCCc-----EEecC-CCHHHHHHHHh
Confidence            999999999965443     33333 35778887764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.56  E-value=5.3e-08  Score=90.44  Aligned_cols=92  Identities=15%  Similarity=0.023  Sum_probs=70.9

Q ss_pred             CCCcEEEEEeccCCCCCCCC-hHHHHHHHHHhhcc-cceeeeecc-------cchhhh----------------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQF-SGAWKTIAALLEGI-ANTGMVELG-------DIRLAT----------------------  200 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l-~P~w~~~A~~l~g~-~~vg~Vdc~-------e~~~~~----------------------  200 (658)
                      .+++++|.||++||++|+.. .|.+.++++++++. +.|..|+++       ......                      
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            47899999999999999997 99999999999754 478888863       111111                      


Q ss_pred             -HHHhhCCCCcccceeeeeEEEEcC-CCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          201 -HLAERKPIGQIFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       201 -~Lc~k~~i~k~f~V~~yPTl~~f~-~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                       .+++.|+      |.++|+++++. +|..    ...|.|..+.+.|.+.+.+.+
T Consensus       107 ~~~~~~~~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~ll  151 (158)
T 3eyt_A          107 PRTMAAYQ------MRGTPSLLLIDKAGDL----RAHHFGDVSELLLGAEIATLL  151 (158)
T ss_dssp             CHHHHHTT------CCSSSEEEEECTTSEE----EEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcC------CCCCCEEEEECCCCCE----EEEEeCCCCHHHHHHHHHHHh
Confidence             3666666      88999998884 5532    456789999999999988763

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.56  E-value=3.4e-08  Score=90.48  Aligned_cols=70  Identities=10%  Similarity=0.040  Sum_probs=57.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccch---------------------hhhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIR---------------------LATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~---------------------~~~~Lc~k~~i  208 (658)
                      .+++++|.||++||++|+.+.|.++++++++++  .+.|..|++++..                     ....++++++ 
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  105 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD-  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcC-
Confidence            468999999999999999999999999999984  4588889888531                     1245888888 


Q ss_pred             CcccceeeeeEEEEcC--CCC
Q 006171          209 GQIFFRRGLPSLVAFP--PGC  227 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~--~g~  227 (658)
                           |.++||++++.  +|.
T Consensus       106 -----v~~~P~~~lid~~~G~  121 (144)
T 1i5g_A          106 -----VKSIPTLVGVEADSGN  121 (144)
T ss_dssp             -----CCSSSEEEEEETTTCC
T ss_pred             -----CCCCCEEEEEECCCCc
Confidence                 88999999995  553

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.55  E-value=1.5e-08  Score=86.02  Aligned_cols=73  Identities=23%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      ++.|++|||+.|+.+.|..++++.++     +.+||.++++   .++++++      ++ +|||++ .+|..     .  
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~---~l~~~~g------~~-vPtl~~-~~G~~-----v--   59 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDA---ALESAYG------LR-VPVLRD-PMGRE-----L--   59 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCH---HHHHHHT------TT-CSEEEC-TTCCE-----E--
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCH---HHHHHhC------CC-cCeEEE-ECCEE-----E--
Confidence            78999999999999999998776432     6889999665   4888988      87 999998 76643     2  


Q ss_pred             cCCCCHhHHHHHHHHh
Q 006171          237 EGELSVDAVTDWFATA  252 (658)
Q Consensus       237 ~G~rs~~~Lv~fv~k~  252 (658)
                      .|..+.+.|.+++.+.
T Consensus        60 ~g~~~~~~L~~~l~~~   75 (87)
T 1ttz_A           60 DWPFDAPRLRAWLDAA   75 (87)
T ss_dssp             ESCCCHHHHHHHHHTC
T ss_pred             eCCCCHHHHHHHHHHH
Confidence            3888999999998765

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.54  E-value=4.4e-08  Score=90.06  Aligned_cols=70  Identities=9%  Similarity=0.040  Sum_probs=57.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccch---------------------hhhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIR---------------------LATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~---------------------~~~~Lc~k~~i  208 (658)
                      .+++++|.||++||++|+.+.|.++++++++++  .+.|..|++++..                     ....++++++ 
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  105 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN-  105 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC-
Confidence            468999999999999999999999999999973  4588888888532                     1345888888 


Q ss_pred             CcccceeeeeEEEEcC--CCC
Q 006171          209 GQIFFRRGLPSLVAFP--PGC  227 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~--~g~  227 (658)
                           |.++||++++.  +|.
T Consensus       106 -----v~~~Pt~~lid~~~G~  121 (146)
T 1o8x_A          106 -----VESIPTLIGVDADSGD  121 (146)
T ss_dssp             -----CCSSSEEEEEETTTCC
T ss_pred             -----CCCCCEEEEEECCCCe
Confidence                 88999999996  553

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.51  E-value=7.5e-08  Score=88.86  Aligned_cols=91  Identities=10%  Similarity=0.193  Sum_probs=69.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccc-hh-h------------------hHHHhhCCCCc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI-RL-A------------------THLAERKPIGQ  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~-~~-~------------------~~Lc~k~~i~k  210 (658)
                      .+++++|.||++||++|+...|.++++++.+.+. +.+..|+++.+ .. .                  ..+++.++   
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  103 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG---  103 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT---
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC---
Confidence            5689999999999999999999999999999874 48888988853 11 0                  23666777   


Q ss_pred             ccceeeeeEEEEc-CCCCCCCCCcccccCCC--CHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAF-PPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~r--s~~~Lv~fv~k~  252 (658)
                         |.++|+++++ ++|..    ...+.|..  +.+.+.+++.+.
T Consensus       104 ---v~~~P~~~lid~~G~i----~~~~~g~~~~~~~~l~~~l~~l  141 (154)
T 3kcm_A          104 ---TTGVPETFVIDRHGVI----LKKVVGAMEWDHPEVIAFLNNE  141 (154)
T ss_dssp             ---CCSBCEEEEECTTSBE----EEEEESCCCTTSHHHHHHHHTC
T ss_pred             ---CCCCCeEEEECCCCcE----EEEEcCCCccccHHHHHHHHHH
Confidence               8899976666 55542    34567765  667888888765

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.50  E-value=5.2e-08  Score=89.00  Aligned_cols=67  Identities=9%  Similarity=0.098  Sum_probs=56.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccch---------------------hhhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIR---------------------LATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~---------------------~~~~Lc~k~~i  208 (658)
                      .+++++|.||++||++|+...|.+++++++++  ..+.+..|+++...                     ....++++++ 
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  105 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG-  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT-
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC-
Confidence            46899999999999999999999999999997  34578888888532                     1345778887 


Q ss_pred             CcccceeeeeEEEEcC
Q 006171          209 GQIFFRRGLPSLVAFP  224 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~  224 (658)
                           |.++||++++.
T Consensus       106 -----v~~~Pt~~lid  116 (144)
T 1o73_A          106 -----VESIPTLITIN  116 (144)
T ss_dssp             -----CCSSSEEEEEE
T ss_pred             -----CCCCCEEEEEE
Confidence                 88999999997

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.46  E-value=4.2e-06  Score=87.13  Aligned_cols=157  Identities=10%  Similarity=0.158  Sum_probs=106.7

Q ss_pred             eccchhhhhhhhhcCCCcEEEE-EEeCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl-~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++..+ +++.+..  .+++.+| |+.+-   |....|.+..++..+.+.+.++.|.........++++|+|.++||+++|
T Consensus        22 lt~~~-f~~~i~~--~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~   98 (298)
T 3ed3_A           22 LTPKS-FDKAIHN--TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF   98 (298)
T ss_dssp             CCHHH-HHHHHTS--SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEE
T ss_pred             eCHHH-HHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEE
Confidence            55555 5666632  2344455 44432   2234567777888887778888886553345789999999999999999


Q ss_pred             eCCC----------------CCeeeecCCCChHHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEE
Q 006171          338 KDPG----------------VKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVIL  401 (658)
Q Consensus       338 k~~~----------------~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~  401 (658)
                      +++.                ..+..|.|..+.+.|.+|+....-+.+.++++...++.....     ..     ..+|++
T Consensus        99 ~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~-----~~-----~~~vi~  168 (298)
T 3ed3_A           99 RPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRK-----SP-----KLSVVL  168 (298)
T ss_dssp             ECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTS-----CS-----SEEEEE
T ss_pred             ECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhc-----CC-----ceEEEE
Confidence            9864                135679999999999999999877777788776655544421     11     367787


Q ss_pred             EcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEecc
Q 006171          402 AGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGE  458 (658)
Q Consensus       402 ~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~  458 (658)
                      +...+.    ....++.+|.                      .+++ .+.|+.+...
T Consensus       169 fs~~~~----~~~~f~~~A~----------------------~~~~-~~~F~~v~~~  198 (298)
T 3ed3_A          169 FSKQDK----ISPVYKSIAL----------------------DWLG-KFDFYSISNK  198 (298)
T ss_dssp             EESSSS----CCHHHHHHHH----------------------HTBT-TEEEEEEEGG
T ss_pred             EcCCCc----chHHHHHHHH----------------------Hhhc-CcEEEEEcch
Confidence            755332    2245666666                      5544 5899999764

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.46  E-value=1e-07  Score=88.96  Aligned_cols=91  Identities=12%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-ccceeeeecccc----------------hhhhHHHhhCCCCcccce
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI----------------RLATHLAERKPIGQIFFR  214 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-~~~vg~Vdc~e~----------------~~~~~Lc~k~~i~k~f~V  214 (658)
                      .+++++|.||++||++|+...|.++++++++.. .+.+..|++++.                .....+++.|+      |
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------v  113 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYG------A  113 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTT------C
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhC------C
Confidence            468999999999999999999999999999974 358888998751                01245888888      8


Q ss_pred             eeeeEEEEc-CCCCCCCCCcccccCCC--CHhHHHHHHHHh
Q 006171          215 RGLPSLVAF-PPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (658)
Q Consensus       215 ~~yPTl~~f-~~g~~~~~~~~~Y~G~r--s~~~Lv~fv~k~  252 (658)
                      .++|+++++ ++|.    ....|.|..  +..++++.+.+.
T Consensus       114 ~~~P~~~lid~~G~----i~~~~~G~~~~~~~~~~~~~~~~  150 (158)
T 3hdc_A          114 NRLPDTFIVDRKGI----IRQRVTGGIEWDAPKVVSYLKSL  150 (158)
T ss_dssp             CSSSEEEEECTTSB----EEEEEESCCCTTSHHHHHHHHTT
T ss_pred             CCcceEEEEcCCCC----EEEEEeCCCccchHHHHHHHHhh
Confidence            899997777 5553    245667754  456666666543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.45  E-value=9.7e-08  Score=102.46  Aligned_cols=62  Identities=26%  Similarity=0.521  Sum_probs=52.8

Q ss_pred             cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhhhcccc
Q 006171           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~------~~~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      .++|++||+.+.++.++|+++|+++++++|||+.+.      +.++|.+|.+||++|+||++|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            489999999999999999999999999999998764      34579999999999999999999996

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.42  E-value=2.3e-07  Score=98.92  Aligned_cols=92  Identities=11%  Similarity=-0.047  Sum_probs=73.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccch------------------------hhhHHHhhC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR------------------------LATHLAERK  206 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~------------------------~~~~Lc~k~  206 (658)
                      .++++||.||++||++|+...|.+++++++++.. +.|..|+|++..                        ....+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            4789999999999999999999999999999874 588889875210                        113467777


Q ss_pred             CCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       207 ~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      +      |.++||++++ ++|..    ...|.|..+.+.|.+++.+.+
T Consensus       161 g------V~~~Pt~~lID~~G~I----v~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          161 R------NRYWPAEYLIDATGTV----RHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             T------CCEESEEEEECTTSBE----EEEEESBCCHHHHHHHHHHHH
T ss_pred             C------CCccCEEEEEeCCCeE----EEEEcCCCCHHHHHHHHHHHH
Confidence            7      8899998888 55542    456789999999999988763

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.42  E-value=1.7e-07  Score=74.76  Aligned_cols=51  Identities=14%  Similarity=0.041  Sum_probs=46.4

Q ss_pred             CcccccCccCC---CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCC
Q 006171           38 SHYDALGIKPY---SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTD   89 (658)
Q Consensus        38 d~Y~iLgv~~~---a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d   89 (658)
                      .-|.||||+++   ++.++|+++||+|....|||++ ++.-...+|++|++.|..
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHH
Confidence            45889999999   9999999999999999999996 777889999999999864

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.41  E-value=2e-07  Score=86.67  Aligned_cols=88  Identities=13%  Similarity=-0.013  Sum_probs=67.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhh--------------------HHHhhCCCCc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLAT--------------------HLAERKPIGQ  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~--------------------~Lc~k~~i~k  210 (658)
                      .+++++|.||++||++|+...|.+.++++++++. +.|..|++++.....                    .+++.|+   
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---  110 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN---  110 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT---
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC---
Confidence            3679999999999999999999999999999876 589999988543210                    1566666   


Q ss_pred             ccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          211 IFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       211 ~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                         |.++|+++++ ++|..    ...+.|..+.++.+.-.
T Consensus       111 ---v~~~P~~~lid~~G~i----~~~~~g~~~~e~~~~~~  143 (152)
T 2lrt_A          111 ---VTNLPSVFLVNRNNEL----SARGENIKDLDEAIKKL  143 (152)
T ss_dssp             ---CCSCSEEEEEETTTEE----EEETTTCSCHHHHHHHH
T ss_pred             ---cccCceEEEECCCCeE----EEecCCHHHHHHHHHHH
Confidence               8899999999 45542    45667877766655433

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.40  E-value=1.4e-07  Score=89.22  Aligned_cols=68  Identities=9%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccchh---------------------hhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRL---------------------ATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~~---------------------~~~Lc~k~~i  208 (658)
                      .++++||.||++||++|++..|.++++++++++  .+.|..|++++...                     ...+++.|+ 
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  125 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYS-  125 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcC-
Confidence            468999999999999999999999999999975  45788888875421                     145788888 


Q ss_pred             CcccceeeeeEEEEcCC
Q 006171          209 GQIFFRRGLPSLVAFPP  225 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~~  225 (658)
                           |.++||++++.+
T Consensus       126 -----v~~~Pt~~lid~  137 (165)
T 3s9f_A          126 -----VESIPTLIGLNA  137 (165)
T ss_dssp             -----CCSSSEEEEEET
T ss_pred             -----CCCCCEEEEEeC
Confidence                 889999999974

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.40  E-value=3.7e-07  Score=87.64  Aligned_cols=92  Identities=9%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc--------h------------------hhhHHHhh
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------R------------------LATHLAER  205 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--------~------------------~~~~Lc~k  205 (658)
                      .+++++|.||++||++|+...|.++++++++.+.+.|..|+++..        .                  ....+++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            358999999999999999999999999999976678888888420        0                  12246677


Q ss_pred             CCCCcccceeeeeEEEEcCCCCCCCCCccccc----------CCCCHhHHHHHHHHhhc
Q 006171          206 KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE----------GELSVDAVTDWFATAIL  254 (658)
Q Consensus       206 ~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~----------G~rs~~~Lv~fv~k~v~  254 (658)
                      |+      |.++|+++++...+.     ..|.          |..+.+.|.+.+.+.+.
T Consensus       112 ~~------v~~~P~~~lid~~G~-----i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A          112 YR------ALRTPEVFLFDERRL-----LRYHGRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             TT------CCEESEEEEECTTCB-----EEEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             cC------CCCCCeEEEECCCCc-----EEEEEecCCccccccccCHHHHHHHHHHHHc
Confidence            77      889999999944332     2233          44478889988887643

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.69  E-value=5.8e-08  Score=88.33  Aligned_cols=69  Identities=14%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             CC-cEEEEEeccCCCCCCCChHHHHHHHHHhh---cccceeeeecccchh-h---------------------hHHHhhC
Q 006171          153 SK-PWLIQVYSDGSYLCGQFSGAWKTIAALLE---GIANTGMVELGDIRL-A---------------------THLAERK  206 (658)
Q Consensus       153 ~~-~~lV~FYapwC~~Ck~l~P~w~~~A~~l~---g~~~vg~Vdc~e~~~-~---------------------~~Lc~k~  206 (658)
                      ++ +++|.||++||++|+.+.|.+++++++++   ..+.+..|++++... .                     ..+++.+
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            45 99999999999999999999999999984   235788888874321 0                     2356666


Q ss_pred             CCCcccceeeeeEEEEcC-CCC
Q 006171          207 PIGQIFFRRGLPSLVAFP-PGC  227 (658)
Q Consensus       207 ~i~k~f~V~~yPTl~~f~-~g~  227 (658)
                      +      |.++||++++. +|.
T Consensus       105 ~------v~~~P~~~lid~~G~  120 (143)
T 2lus_A          105 G------ITGIPALVIVKKDGT  120 (143)
Confidence            6      89999999997 443

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.34  E-value=6.1e-07  Score=84.27  Aligned_cols=98  Identities=10%  Similarity=0.094  Sum_probs=71.7

Q ss_pred             CCCCccc----cCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          144 EDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       144 ~nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .+|+..+    ..++++||.||++||..|+.|...-   .++++.++....+.+||.++. ....++++|+      |.+
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~-~~~~l~~~y~------v~~  101 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSE-EGQRYIQFYK------LGD  101 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSH-HHHHHHHHHT------CCS
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCH-hHHHHHHHcC------CCC
Confidence            4566665    2589999999999999999997543   556666655556677777532 3345888888      889


Q ss_pred             eeEEEEcCCC-CCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g-~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||++++.+. +.   ....+.| .+++.+++++.+.
T Consensus       102 ~P~~~fld~~~G~---~l~~~~g-~~~~~fl~~L~~~  134 (153)
T 2dlx_A          102 FPYVSILDPRTGQ---KLVEWHQ-LDVSSFLDQVTGF  134 (153)
T ss_dssp             SSEEEEECTTTCC---CCEEESS-CCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCc---EeeecCC-CCHHHHHHHHHHH
Confidence            9999999653 32   1344556 8999999988776

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.33  E-value=5.2e-07  Score=86.33  Aligned_cols=97  Identities=15%  Similarity=0.274  Sum_probs=72.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-ccceeeeecccc--hhhhHHHhhCCCC-------------cccce-
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI--RLATHLAERKPIG-------------QIFFR-  214 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-~~~vg~Vdc~e~--~~~~~Lc~k~~i~-------------k~f~V-  214 (658)
                      .+++++|.||++||++|+...|.++++.++++. .+.|..|+++..  .....+++++++.             +.|.+ 
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            468999999999999999999999999999974 358889998843  3335577777731             11222 


Q ss_pred             ---eeeeEEEEc-CCCCCCCCCcccccCCCC--HhHHHHHHHHh
Q 006171          215 ---RGLPSLVAF-PPGCKSSDCMTRFEGELS--VDAVTDWFATA  252 (658)
Q Consensus       215 ---~~yPTl~~f-~~g~~~~~~~~~Y~G~rs--~~~Lv~fv~k~  252 (658)
                         .++|+++++ ++|..    ...|.|..+  .+.|.+++.+.
T Consensus       139 ~~~~~~P~~~lid~~G~i----~~~~~g~~~~~~~~l~~~l~~l  178 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCE----IATIAGPAEWASEDALKLIRAA  178 (186)
T ss_dssp             TCCSSSSEEEEECTTSBE----EEEEESCCCTTSHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCE----EEEEecCCccCHHHHHHHHHHH
Confidence               389999998 45532    355778764  78899988776

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=9.2e-07  Score=81.48  Aligned_cols=88  Identities=11%  Similarity=0.071  Sum_probs=67.0

Q ss_pred             CCCcEEEEEeccCCCC--CCCChHHHHHHHHHh-hcc-cceeeeecccchh----------------------hhHHHhh
Q 006171          152 DSKPWLIQVYSDGSYL--CGQFSGAWKTIAALL-EGI-ANTGMVELGDIRL----------------------ATHLAER  205 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~--Ck~l~P~w~~~A~~l-~g~-~~vg~Vdc~e~~~----------------------~~~Lc~k  205 (658)
                      .+++++|.||++||++  |+...|.+.++.+++ ++. +.|..|++++.+.                      ...+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            3689999999999999  999999999999999 665 4888888885421                      1246777


Q ss_pred             CCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          206 KPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       206 ~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+      |.++|+++++ ++|.      ..+.. .+.+.+.+.+.+.
T Consensus       112 ~~------v~~~P~~~lid~~G~------i~~~~-~~~~~l~~~l~~l  146 (150)
T 3fw2_A          112 YS------IYKIPANILLSSDGK------ILAKN-LRGEELKKKIENI  146 (150)
T ss_dssp             TT------CCSSSEEEEECTTSB------EEEES-CCHHHHHHHHHHH
T ss_pred             cC------CCccCeEEEECCCCE------EEEcc-CCHHHHHHHHHHH
Confidence            77      8899999999 4553      22222 2677777777654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.33  E-value=3.2e-08  Score=87.49  Aligned_cols=82  Identities=13%  Similarity=0.151  Sum_probs=53.8

Q ss_pred             CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--hhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      +++++ ||++||++|+.+.|.+++++..    ..+..||.+.+.  ....++++++      |.++||+  |.+|..   
T Consensus        20 ~~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~------v~~~Pt~--~~~g~~---   83 (116)
T 2e7p_A           20 APVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTG------RGTVPNV--FIGGKQ---   83 (116)
T ss_dssp             SSEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHS------CCSSCEE--EETTEE---
T ss_pred             CCEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhC------CCCcCEE--EECCEE---
Confidence            45555 9999999999999999887543    244445544220  1134888888      8899999  446632   


Q ss_pred             CcccccCCC---CHhHHHHHHHHh
Q 006171          232 CMTRFEGEL---SVDAVTDWFATA  252 (658)
Q Consensus       232 ~~~~Y~G~r---s~~~Lv~fv~k~  252 (658)
                       ...|.|..   +.+.|.+++.+.
T Consensus        84 -v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           84 -IGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             -EECHHHHHHHHHTTCHHHHHHHT
T ss_pred             -ECChHHHHHHHhCChHHHHHHHc
Confidence             33444443   556677777654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.31  E-value=5e-07  Score=87.09  Aligned_cols=91  Identities=9%  Similarity=-0.004  Sum_probs=69.5

Q ss_pred             CC-cEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccc--------h------------------hhhHHHh
Q 006171          153 SK-PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI--------R------------------LATHLAE  204 (658)
Q Consensus       153 ~~-~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~--------~------------------~~~~Lc~  204 (658)
                      ++ +++|.||++||++|+...|.++++++++... +.|..|+++..        .                  ....+++
T Consensus        45 gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (196)
T 2ywi_A           45 SDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAK  124 (196)
T ss_dssp             CSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence            44 5999999999999999999999999999875 58889998421        0                  1224667


Q ss_pred             hCCCCcccceeeeeEEEEc-CCCCCCCCCccc---------ccCCCCHhHHHHHHHHhh
Q 006171          205 RKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTR---------FEGELSVDAVTDWFATAI  253 (658)
Q Consensus       205 k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~---------Y~G~rs~~~Lv~fv~k~v  253 (658)
                      .|+      |.++|+++++ ++|..    ...         +.|..+.+.|.+.+.+.+
T Consensus       125 ~~~------v~~~P~~~lid~~G~i----~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          125 AYD------AACTPDFYIFDRDLKC----VYRGQLDDSRPNNGIPVTGESIRAALDALL  173 (196)
T ss_dssp             HHT------CCEESEEEEEETTCBE----EEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred             HhC------CCCCCeEEEEcCCCeE----EEccccCcccccccCccCHHHHHHHHHHHH
Confidence            776      8899999999 45532    222         457778899999988763

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.31  E-value=3e-07  Score=87.77  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=66.1

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------------------hhhHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------------------~~~~Lc~k~~i~k~  211 (658)
                      .+++++|.||++||++|+...|.+++++++  + +.|..|++++..                    ....+++.|+    
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~-v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  129 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--G-VVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLG----  129 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--T-CEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHT----
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--C-CEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcC----
Confidence            478999999999999999999999999876  3 567777753211                    1123556666    


Q ss_pred             cceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++|+.+++ ++|..    ...|.|..+.+.+.+++.+.
T Consensus       130 --v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  165 (176)
T 3kh7_A          130 --VYGAPETYLIDKQGII----RHKIVGVVDQKVWREQLAPL  165 (176)
T ss_dssp             --CCSSCEEEEECTTCBE----EEEEESCCCHHHHHHHTHHH
T ss_pred             --CCCCCeEEEECCCCeE----EEEEcCCCCHHHHHHHHHHH
Confidence              8899987777 45532    45678999999999888776

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.26  E-value=1.4e-07  Score=77.97  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=45.3

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.||++||++|+++.|.++++++++.....+..||.+.  ....+++++|      |+++||+++  +|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~g------v~~vPt~~i--~g   63 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDK--ARIAEAEKAG------VKSVPALVI--DG   63 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCS--STHHHHHHHT------CCEEEEEEE--TT
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHcC------CCcCCEEEE--CC
Confidence            688999999999999999999887664434555555431  1234778888      889999987  55

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.24  E-value=4.1e-07  Score=85.50  Aligned_cols=97  Identities=13%  Similarity=0.040  Sum_probs=73.1

Q ss_pred             CCCcEEEEEeccCCCC-CCCChHHHHHHHHHhhc----ccceeeeecccch----hh---------------------hH
Q 006171          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG----IANTGMVELGDIR----LA---------------------TH  201 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~-Ck~l~P~w~~~A~~l~g----~~~vg~Vdc~e~~----~~---------------------~~  201 (658)
                      .+++++|.||++||++ |+...|.++++.++++.    .+.|..|+++.++    ..                     ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4689999999999998 99999999999998874    3588889887321    00                     34


Q ss_pred             HHhhCCC---------CcccceeeeeEEEEcCCCCCCCCCcccccCCC--CHhHHHHHHHHh
Q 006171          202 LAERKPI---------GQIFFRRGLPSLVAFPPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (658)
Q Consensus       202 Lc~k~~i---------~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~r--s~~~Lv~fv~k~  252 (658)
                      +++.+++         .+.|.|.+.|+++++.+| .   ....|.|..  +.+.|.+.+++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G-~---i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEG-R---LVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETT-E---EEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECC-E---EEEEECCCCCCCHHHHHHHHHHh
Confidence            6666664         234668899999999844 3   245667777  888998888653

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.22  E-value=1.8e-06  Score=81.62  Aligned_cols=96  Identities=8%  Similarity=-0.075  Sum_probs=65.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc--------cchhhhHHH-hhCCCC------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG--------DIRLATHLA-ERKPIG------------  209 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~--------e~~~~~~Lc-~k~~i~------------  209 (658)
                      .+++++|.|||+||+.|+ ..|.++++.+++++. +.|..|+++        ........+ +++++.            
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            468999999999999999 999999999999876 588888874        111222233 321110            


Q ss_pred             -----------cccceeeee------EEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 -----------QIFFRRGLP------SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 -----------k~f~V~~yP------Tl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                                 +.|.+.++|      +.+++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  166 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKV----YERYSSLTKPSSLSETIEEL  166 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCE----EEEECTTSCGGGGHHHHHHH
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCE----EEEeCCCCCHHHHHHHHHHH
Confidence                       124588999      65555 66643    45677888889998888776

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.20  E-value=9.9e-06  Score=75.39  Aligned_cols=133  Identities=13%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             HHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCC
Q 006171          359 VMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQS  437 (658)
Q Consensus       359 fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~  437 (658)
                      -|+.|.+|++++++..|... ++..      +.    ...++++.. .+.+.+.+++.++.+|+                
T Consensus         7 ~~~~~~~PLV~e~t~en~~~-~~~~------~~----~~~~l~f~~~~~~~~~~~~~~~~~vAk----------------   59 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPK-IFGG------EI----KTHILLFLPKSVSDYDGKLSNFKTAAE----------------   59 (147)
T ss_dssp             --------CEEECCTTTHHH-HHSS------SC----CEEEEEECCTTSSSHHHHHHHHHHHHH----------------
T ss_pred             chhhccCCeeEEeccccHHH-HhcC------CC----ceEEEEEecCCcHhHHHHHHHHHHHHH----------------
Confidence            46789999999999999744 3321      11    133343443 34457778888888888                


Q ss_pred             chHHHHhcCCCcEEEEEEec--cchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCC--ccccceeccccCccc
Q 006171          438 LAPAAVAFRNKRLTFAWLDG--EAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNT--TEDEAKIERKPRNIW  513 (658)
Q Consensus       438 ~~~~A~~~~~~~v~F~wvd~--~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~--~~~~~k~~~~~w~~~  513 (658)
                            .|++ ++.|+|+|.  +...+.++.|-.++            +++|.|+|+    +.  ..  .||.      +
T Consensus        60 ------~fkg-ki~Fv~vd~~~~~~~~~l~~fGl~~------------~~~P~v~i~----~~~~~~--~Ky~------~  108 (147)
T 3bj5_A           60 ------SFKG-KILFAFIDSDHTDNQRILEFFGLKK------------EECPAVRLI----TLEEEM--TKYK------P  108 (147)
T ss_dssp             ------TTTT-TCEEEEECTTCGGGHHHHHHTTCCG------------GGCSEEEEE----ECSSSC--EEEC------C
T ss_pred             ------HcCC-ceEEEEEecchHhHHHHHHHcCCCc------------ccCCEEEEE----eccccc--ccCC------C
Confidence                  6765 489999999  66667777772221            146999988    43  22  3555      2


Q ss_pred             ccccccccCccccchhccCCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCC-CC
Q 006171          514 DAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL-VP  568 (658)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l-~~  568 (658)
                         +.+              .-+.+.|.+|+++++.  +.....++++.+|+= ++
T Consensus       109 ---~~~--------------~~t~~~i~~Fv~d~l~--GkL~p~~KSEpiPe~wn~  145 (147)
T 3bj5_A          109 ---ESE--------------ELTAERITEFCHRFLE--GKIKPHLMSQELPEDWDK  145 (147)
T ss_dssp             ---SCC--------------CCCHHHHHHHHHHHHT--TCSCEEECCSCCCGGGC-
T ss_pred             ---Ccc--------------cCCHHHHHHHHHHHHc--CCccccccCCCCCCCcCC
Confidence               222              2255899999999999  677888899999986 54

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.19  E-value=3.4e-06  Score=78.47  Aligned_cols=91  Identities=12%  Similarity=0.015  Sum_probs=69.0

Q ss_pred             CCCcEEEEEeccCCCC-CCCChHHHHHHHHHhhc-----ccceeeeecccch-------------------------hhh
Q 006171          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG-----IANTGMVELGDIR-------------------------LAT  200 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~-Ck~l~P~w~~~A~~l~g-----~~~vg~Vdc~e~~-------------------------~~~  200 (658)
                      .+++++|.||++||++ |+...|.++++.++++.     .+.+..|+++..+                         ...
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4689999999999998 99999999999999975     4478888886321                         112


Q ss_pred             HHHhhCCCCcccceeeee---------------EEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          201 HLAERKPIGQIFFRRGLP---------------SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       201 ~Lc~k~~i~k~f~V~~yP---------------Tl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .+++.|+      |.+.|               +++++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       102 ~~~~~~~------v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  159 (164)
T 2ggt_A          102 QVARAYR------VYYSPGPKDEDEDYIVDHTIIMYLIGPDGEF----LDYFGQNKRKGEIAASIATH  159 (164)
T ss_dssp             HHHHTTT------CCEEEEEECTTSCEEEEECCEEEEECTTSCE----EEEEETTCCHHHHHHHHHHH
T ss_pred             HHHHhcC------eEEEecCCCCCCCeeEeccceEEEECCCCeE----EEEeCCCCCHHHHHHHHHHH
Confidence            3666666      88899               55555 56643    45678888999999988776

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.18  E-value=6e-07  Score=100.72  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=74.3

Q ss_pred             EecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeee
Q 006171          140 VVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (658)
Q Consensus       140 ~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yP  218 (658)
                      .++.+.++.+.. .....++.||++||++|+.+.|.++++|.++. .+.+.+||.++++   +++++++      |+++|
T Consensus       103 ~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~---~~~~~~~------i~svP  172 (521)
T 1hyu_A          103 KEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQ---NEITERN------VMGVP  172 (521)
T ss_dssp             CSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCH---HHHHHTT------CCSSS
T ss_pred             CCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhH---HHHHHhC------CCccC
Confidence            355555554443 45667889999999999999999999998875 6789999999554   5999999      88999


Q ss_pred             EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      |+++  +|..      ...|..+.+.|.+|+.+
T Consensus       173 t~~i--~g~~------~~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          173 AVFV--NGKE------FGQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             EEEE--TTEE------EEESCCCHHHHHHHHCC
T ss_pred             EEEE--CCEE------EecCCCCHHHHHHHHhh
Confidence            9977  5532      24588999999999744

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.17  E-value=3.1e-06  Score=81.66  Aligned_cols=97  Identities=9%  Similarity=-0.080  Sum_probs=70.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHH-hhCCCC------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLA-ERKPIG------------  209 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc-~k~~i~------------  209 (658)
                      .++++||.||++||+.|+...|.++++.+++++. +.|..|++++        .....+.+ +++++.            
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4689999999999999999999999999999876 5888998862        22223344 332110            


Q ss_pred             -----------cccceeeee------EEEE-cCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 -----------QIFFRRGLP------SLVA-FPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 -----------k~f~V~~yP------Tl~~-f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                                 +.|.+.++|      +.++ -++|..    ...|.|..+.+.|.+.+.+.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  183 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVP----VERFSPGASVKDIEKKLIPL  183 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCE----EEEECTTCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcE----EEEECCCCCHHHHHHHHHHH
Confidence                       013588899      5444 466643    45677888899999988776

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.17  E-value=8.4e-07  Score=81.07  Aligned_cols=86  Identities=5%  Similarity=-0.095  Sum_probs=61.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-----------------------hhHHHhhCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-----------------------ATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-----------------------~~~Lc~k~~  207 (658)
                      .+++++|.||++||++|+...|.+.++.+++++. +.|..|+++.+..                       ...+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            4689999999999999999999999999998754 4788888774321                       123555566


Q ss_pred             CCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          208 IGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       208 i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                            |.++|+.+++...+.     ..+.+ .+.+++.+++
T Consensus       111 ------v~~~P~~~lid~~G~-----i~~~~-~~~~~l~~~l  140 (143)
T 4fo5_A          111 ------LRKGFKNFLINDEGV-----IIAAN-VTPEKLTEIL  140 (143)
T ss_dssp             ------GGGCCCEEEECTTSB-----EEEES-CCHHHHHHHH
T ss_pred             ------CCCCCcEEEECCCCE-----EEEcc-CCHHHHHHHH
Confidence                  889999888864433     22332 2455665554

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=2.8e-07  Score=85.79  Aligned_cols=95  Identities=8%  Similarity=-0.040  Sum_probs=61.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHH-HHHHhh-c-ccceeeeecccchh-hhHHHhhCCC------------Ccccc--
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKT-IAALLE-G-IANTGMVELGDIRL-ATHLAERKPI------------GQIFF--  213 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~-~A~~l~-g-~~~vg~Vdc~e~~~-~~~Lc~k~~i------------~k~f~--  213 (658)
                      .+++++|.||++||++|+...|.+++ +...++ . .+.+..|++++... ...+++++++            .+.|.  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            46799999999999999999999998 888776 3 35888888885421 2223332221            12233  


Q ss_pred             eeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          214 RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       214 V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      +.++||++++ ++|..    ...+.| .+.+++.+++.+
T Consensus       112 ~~~~P~~~lid~~G~i----~~~~~g-~~~~~l~~~l~~  145 (159)
T 2ls5_A          112 DAGITRNVLIDREGKI----VKLTRL-YNEEEFASLVQQ  145 (159)
Confidence            4679999888 55543    233444 445555555433

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.14  E-value=2.8e-06  Score=84.06  Aligned_cols=90  Identities=10%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             CC-cEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccc--------h------------------hhhHHHh
Q 006171          153 SK-PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI--------R------------------LATHLAE  204 (658)
Q Consensus       153 ~~-~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~--------~------------------~~~~Lc~  204 (658)
                      ++ ++||.||++||++|+...|.++++++++++. +.|..|+++..        .                  ....+++
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  137 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK  137 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence            45 5999999999999999999999999999876 58888998411        0                  1234677


Q ss_pred             hCCCCcccceeeeeEEEEcCCCCCCCCCcccccC-----------CCCHhHHHHHHHHhh
Q 006171          205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG-----------ELSVDAVTDWFATAI  253 (658)
Q Consensus       205 k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G-----------~rs~~~Lv~fv~k~v  253 (658)
                      .|+      |.++|+++++-..+.     ..|.|           ..+.+.|.+.+.+.+
T Consensus       138 ~~~------v~~~P~~~liD~~G~-----i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll  186 (218)
T 3u5r_E          138 AYG------AACTPDFFLYDRERR-----LVYHGQFDDARPGNGKDVTGADLRAAVDAVL  186 (218)
T ss_dssp             HHT------CCEESEEEEECTTCB-----EEEEECSSSCCTTSCCCCCCHHHHHHHHHHH
T ss_pred             HcC------CCCCCeEEEECCCCc-----EEEeccccccccccccccCHHHHHHHHHHHH
Confidence            777      889999999944433     34554           334677887777663

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.11  E-value=6.4e-06  Score=77.21  Aligned_cols=91  Identities=10%  Similarity=0.018  Sum_probs=69.0

Q ss_pred             CCCcEEEEEeccCCCC-CCCChHHHHHHHHHhhc-----ccceeeeecccch-------------------------hhh
Q 006171          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG-----IANTGMVELGDIR-------------------------LAT  200 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~-Ck~l~P~w~~~A~~l~g-----~~~vg~Vdc~e~~-------------------------~~~  200 (658)
                      .++++||.||++||++ |+...|.++++.++++.     .+.|..|+++.++                         ...
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3689999999999998 99999999999999963     4578888887311                         112


Q ss_pred             HHHhhCCCCcccceeeee---------------EEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          201 HLAERKPIGQIFFRRGLP---------------SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       201 ~Lc~k~~i~k~f~V~~yP---------------Tl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .+++.|+      |...|               +++++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       105 ~~~~~~~------v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  162 (171)
T 2rli_A          105 QASHSYR------VYYNAGPKDEDQDYIVDHSIAIYLLNPDGLF----TDYYGRSRSAEQISDSVRRH  162 (171)
T ss_dssp             HHHHHSC------CCCEECCCCSSCCCCEECCCEEEEECTTSCE----EEEEESSCCHHHHHHHHHHH
T ss_pred             HHHHHhC------eEEEecCCCCCCCeEEeccceEEEECCCCeE----EEEECCCCCHHHHHHHHHHH
Confidence            4667777      77777               65555 56643    45678999999999988776

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.11  E-value=4e-06  Score=78.42  Aligned_cols=97  Identities=8%  Similarity=-0.050  Sum_probs=70.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHHh-hCCCC------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAE-RKPIG------------  209 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc~-k~~i~------------  209 (658)
                      .++++||.||++||++|+...|.++++++++++. +.|..|+++.        .......++ ++++.            
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4689999999999999999999999999999876 5888998852        222333455 44321            


Q ss_pred             ---cc--------cce--eeee---EEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 ---QI--------FFR--RGLP---SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 ---k~--------f~V--~~yP---Tl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         +.        |.+  .++|   +.+++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  166 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQV----VDRYYPTTSPLSLERDIKQL  166 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCE----EEEECTTSCGGGGHHHHHHH
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCE----EEeeCCCCCHHHHHHHHHHH
Confidence               01        134  6789   65555 66643    45678888888999888776

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.09  E-value=4.3e-06  Score=79.99  Aligned_cols=97  Identities=12%  Similarity=0.091  Sum_probs=69.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHHhh-CCCC------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAER-KPIG------------  209 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc~k-~~i~------------  209 (658)
                      .++++||.||++||++|+...|.++++++++++. +.|..|+|++        .....+.+++ +++.            
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4689999999999999999999999999999876 5888898862        2233345555 3211            


Q ss_pred             --c---ccceeeee--------EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 --Q---IFFRRGLP--------SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 --k---~f~V~~yP--------Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        .   .|.+.++|        ++++-++|..    ...|.|..+.+.|.+.+.+.
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKV----VGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCE----EEEECTTSCHHHHHHHHHTT
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCCE----EEEeCCCCCHHHHHHHHHHH
Confidence              1   23477888        4555566643    45677888888888887654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.07  E-value=2.8e-06  Score=70.35  Aligned_cols=79  Identities=9%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      ++.|+++||++|+++.|.+++++.+..+ +.+..||.+++.. ...++++++.+    +.++|++.  .+|..       
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~----~~~vP~i~--~~g~~-------   68 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKP----VETVPQIF--VDQQH-------   68 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCC----SCCSCEEE--ETTEE-------
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCC----CceeCeEE--ECCEE-------
Confidence            6789999999999999999999987654 6888899874421 13588877633    67999983  35532       


Q ss_pred             ccCCCCHhHHHHHHHHh
Q 006171          236 FEGELSVDAVTDWFATA  252 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv~k~  252 (658)
                      ..|   .++|.+++.+.
T Consensus        69 i~~---~~~l~~~~~~~   82 (85)
T 1ego_A           69 IGG---YTDFAAWVKEN   82 (85)
T ss_dssp             EES---SHHHHHHHHHH
T ss_pred             EEC---HHHHHHHHHHh
Confidence            123   36888887654

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.07  E-value=1.4e-05  Score=72.13  Aligned_cols=100  Identities=20%  Similarity=0.270  Sum_probs=74.4

Q ss_pred             CCccee--eccchhhhhhhhhcCCCcEEEE-EEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCC
Q 006171          256 LPRIFY--YTKESMGKNFLAKTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAP  332 (658)
Q Consensus       256 lP~~~~--it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~P  332 (658)
                      +|+...  +++.+.++.|+..   +.+.|| ||.+.+......+..+|..+ +.+.|+.+.     +.++.++|+++ .|
T Consensus        18 gP~~~~~~i~s~~e~e~fi~~---~~v~VVGfF~~~~~~~~~~F~~~A~~~-~d~~F~~t~-----~~~v~~~~~v~-~~   87 (124)
T 2l4c_A           18 GAAQEPTWLTDVPAAMEFIAA---TEVAVIGFFQDLEIPAVPILHSMVQKF-PGVSFGIST-----DSEVLTHYNIT-GN   87 (124)
T ss_dssp             CCSCCCEECCSHHHHHHHHHT---SSEEEEEECSCTTSTHHHHHHHHHHHC-TTSEEEEEC-----CHHHHHHTTCC-SS
T ss_pred             CCCCcceEcCCHHHHHHHHhc---CCCEEEEEECCCCChhHHHHHHHHHhC-CCceEEEEC-----hHHHHHHcCCC-CC
Confidence            565544  6655558889864   335555 55443333356667788888 788898874     45699999998 79


Q ss_pred             EEEEEeCCCCCeeeecC----CCChHHHHHHHHhhcc
Q 006171          333 AIVFLKDPGVKPVVYYG----SFNNSRLSEVMEQNKL  365 (658)
Q Consensus       333 tlvlfk~~~~~p~~y~g----~~~~~~L~~fi~~~~~  365 (658)
                      +|++|++++++++.|.|    .++.+.|.+||+.|++
T Consensus        88 ~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n~l  124 (124)
T 2l4c_A           88 TICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSL  124 (124)
T ss_dssp             CEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHHCC
T ss_pred             eEEEEEcCCCCceeecCcccCCCCHHHHHHHHHHhcC
Confidence            99999998888888986    7899999999998864

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.03  E-value=1.3e-06  Score=75.82  Aligned_cols=81  Identities=11%  Similarity=0.031  Sum_probs=59.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      ...+.++.|+++||++|+.+.|.+++++..    +.+..||.++. ....++++++ .      ++|++  |.+|..   
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~~----i~~~~vdi~~~-~~~el~~~~g-~------~vP~l--~~~g~~---   76 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDR----FILQEVDITLP-ENSTWYERYK-F------DIPVF--HLNGQF---   76 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSS----SEEEEEETTSS-TTHHHHHHSS-S------SCSEE--EESSSE---
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhhC----CeEEEEECCCc-chHHHHHHHC-C------CCCEE--EECCEE---
Confidence            456789999999999999999988876532    68899999821 1245888886 4      89987  345532   


Q ss_pred             CcccccCCCCHhHHHHHHHHh
Q 006171          232 CMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        . ..|..+.+.|.+++.+.
T Consensus        77 --~-~~~g~~~~~l~~~l~~~   94 (100)
T 1wjk_A           77 --L-MMHRVNTSKLEKQLRKL   94 (100)
T ss_dssp             --E-EESSCCHHHHHHHHHSS
T ss_pred             --E-EecCCCHHHHHHHHHHH
Confidence              2 34567888999998765

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.03  E-value=9.6e-06  Score=78.00  Aligned_cols=97  Identities=10%  Similarity=0.026  Sum_probs=68.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHHh-hCCCC------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAE-RKPIG------------  209 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc~-k~~i~------------  209 (658)
                      .++++||.||++||++|+...|.+.++.+++++. +.|..|+++.        .....+.++ ++++.            
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            4689999999999999999999999999999876 5888888752        122222333 22210            


Q ss_pred             --------------cccceeeee---EEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 --------------QIFFRRGLP---SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 --------------k~f~V~~yP---Tl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                                    +.|.+.++|   +.+++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i----~~~~~g~~~~~~l~~~i~~l  181 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVP----VERFSPGASVKDIEEKLIPL  181 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCE----EEEECTTCCHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCE----EEEECCCCCHHHHHHHHHHH
Confidence                          122345666   76666 56643    45678888999999998876

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.02  E-value=2.7e-06  Score=84.18  Aligned_cols=84  Identities=14%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeee----------------------------------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMV----------------------------------------  191 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~V----------------------------------------  191 (658)
                      +.++.++.|+++||++|+++.|.++++++.  + +.+.-+                                        
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~-v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--G-ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            467899999999999999999999998753  1 111100                                        


Q ss_pred             eccc-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          192 ELGD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       192 dc~e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +|.. -.....+++++|      |++.||+ +|.+|       ..+.|..+.+.|.+++.+.
T Consensus       162 ~~~~~v~~~~~l~~~~g------V~gtPt~-v~~dG-------~~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          162 SCDVDIADHYALGVQLG------VSGTPAV-VLSNG-------TLVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCSCCHHHHHHHHHHHT------CCSSSEE-ECTTS-------CEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC------CCccCEE-EEcCC-------eEecCCCCHHHHHHHHHHh
Confidence            2321 112344788888      8899999 56565       2457989999999988765

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.01  E-value=8e-06  Score=76.29  Aligned_cols=97  Identities=8%  Similarity=-0.049  Sum_probs=66.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHH-hhCCCC------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLA-ERKPIG------------  209 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc-~k~~i~------------  209 (658)
                      .+++++|.||++||++|+...|.++++.+++++. +.|..|+++.        .......+ +++++.            
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4689999999999999999999999999999875 5888998852        11223342 443221            


Q ss_pred             ---ccc--------c-----eeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          210 ---QIF--------F-----RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       210 ---k~f--------~-----V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         ..|        .     |+++|+.+++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  165 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQP----VKRYSPTTAPYDIEGDIMEL  165 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCE----EEEECTTSCGGGGHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCE----EEEcCCCCCHHHHHHHHHHH
Confidence               011        2     3345766666 55542    45677888888888887765

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=97.96  E-value=1.3e-05  Score=76.92  Aligned_cols=91  Identities=12%  Similarity=0.052  Sum_probs=68.1

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh----------------------hhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~----------------------~~~Lc~k~~  207 (658)
                      .+++++|.|| ++||++|+...|.+.+++++++.. +.|..|+++....                      ...+++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            3589999999 999999999999999999999764 4788888774211                      123555565


Q ss_pred             CCccccee------eeeEEEEc-CCCCCCCCCcccccCC----CCHhHHHHHHHHh
Q 006171          208 IGQIFFRR------GLPSLVAF-PPGCKSSDCMTRFEGE----LSVDAVTDWFATA  252 (658)
Q Consensus       208 i~k~f~V~------~yPTl~~f-~~g~~~~~~~~~Y~G~----rs~~~Lv~fv~k~  252 (658)
                            |.      ++|+++++ ++|..    ...+.|.    ++.+.|.+.+.+.
T Consensus       110 ------v~~~~~g~~~P~~~lid~~G~i----~~~~~g~~~~~~~~~~l~~~l~~l  155 (187)
T 1we0_A          110 ------VLNEETGLADRGTFIIDPDGVI----QAIEINADGIGRDASTLINKVKAA  155 (187)
T ss_dssp             ------CEETTTTEECEEEEEECTTSBE----EEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             ------CCcCCCCceeeEEEEECCCCeE----EEEEecCCCCCCCHHHHHHHHHHH
Confidence                  88      99999999 45532    3445554    3788898888765

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.88  E-value=1.1e-05  Score=78.10  Aligned_cols=98  Identities=12%  Similarity=0.029  Sum_probs=67.4

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC----C------------CCcccc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK----P------------IGQIFF  213 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~----~------------i~k~f~  213 (658)
                      .+++++|.|| ++||++|+...|.+.++.++++.. +.|..|+++........++++    +            +.+.|.
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            3579999999 999999999999999999999864 578888877422222222221    0            112344


Q ss_pred             ee-----eeeEEEEcCCCCCCCCCcccccCC----CCHhHHHHHHHHh
Q 006171          214 RR-----GLPSLVAFPPGCKSSDCMTRFEGE----LSVDAVTDWFATA  252 (658)
Q Consensus       214 V~-----~yPTl~~f~~g~~~~~~~~~Y~G~----rs~~~Lv~fv~k~  252 (658)
                      |.     ++|+++++...+.   ....+.|.    ++.+.|.+.+.+.
T Consensus       124 v~~~~g~~~P~~~lid~~G~---i~~~~~g~~~~~~~~~~l~~~l~~l  168 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNE---IQFVSATAGSVGRNVDEVLRVLDAL  168 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSB---EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CcccCCCccceEEEEcCCCe---EEEEEecCCCCCCCHHHHHHHHHHH
Confidence            88     9999999854332   23344454    3788898888776

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.88  E-value=1.1e-05  Score=76.44  Aligned_cols=33  Identities=3%  Similarity=0.094  Sum_probs=29.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG  184 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g  184 (658)
                      +.++.+++|+++||+||+++.|..+++.++...
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~   53 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN   53 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC
Confidence            567899999999999999999999999887644

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=97.88  E-value=1.7e-05  Score=76.91  Aligned_cols=91  Identities=9%  Similarity=0.034  Sum_probs=67.2

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-------------------------hhHHHh
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAE  204 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-------------------------~~~Lc~  204 (658)
                      .+++++|.|| ++||++|+...|.+.++.++++.. +.|..|+++....                         ...+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            3579999999 999999999999999999999765 4788888774211                         123555


Q ss_pred             hCCCCccccee-----eeeEEEEc-CCCCCCCCCcccccCCC----CHhHHHHHHHHh
Q 006171          205 RKPIGQIFFRR-----GLPSLVAF-PPGCKSSDCMTRFEGEL----SVDAVTDWFATA  252 (658)
Q Consensus       205 k~~i~k~f~V~-----~yPTl~~f-~~g~~~~~~~~~Y~G~r----s~~~Lv~fv~k~  252 (658)
                      .|+      |.     ++|+.+++ ++|..    ...+.|..    +.++|.+.+.+.
T Consensus       112 ~~~------v~~~~g~~~P~~~lid~~G~i----~~~~~g~~~~~~~~~~l~~~l~~l  159 (198)
T 1zof_A          112 DYD------VLFEEAIALRGAFLIDKNMKV----RHAVINDLPLGRNADEMLRMVDAL  159 (198)
T ss_dssp             HTT------CEETTTEECEEEEEEETTTEE----EEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HhC------CcccCCcccceEEEECCCCEE----EEEEecCCCCCCCHHHHHHHHHHH
Confidence            555      88     99999888 45532    34455543    678888887665

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.84  E-value=1.3e-05  Score=76.56  Aligned_cols=96  Identities=5%  Similarity=-0.089  Sum_probs=65.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHHhhCCCC-------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKPIG-------------  209 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc~k~~i~-------------  209 (658)
                      .++++||.||++||+.|+...|.++++.+++++. +.|..|+++.        .....+.++++++.             
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            4689999999999999999999999999999875 5888898752        12233455554321             


Q ss_pred             --ccc----------c-----eeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          210 --QIF----------F-----RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       210 --k~f----------~-----V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                        +.|          .     |+.+|+++++ ++|..    ...|.|..+.+.|.+.+.+
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCV----VKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCE----EEEECTTSCTHHHHTTSGG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCE----EEEeCCCCCHHHHHHHHHH
Confidence              011          1     3335887666 45532    3456777777777665543

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.81  E-value=1.4e-05  Score=74.16  Aligned_cols=87  Identities=11%  Similarity=0.011  Sum_probs=60.5

Q ss_pred             CcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh--------------------hhHHHhhCCCCcc
Q 006171          154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL--------------------ATHLAERKPIGQI  211 (658)
Q Consensus       154 ~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~--------------------~~~Lc~k~~i~k~  211 (658)
                      ++++|.|| ++||++|+...|.+.++++++++. +.|..|+++....                    ...+++.|+    
T Consensus        37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----  112 (160)
T 1xvw_A           37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYG----  112 (160)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTT----
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcC----
Confidence            48999998 999999999999999999998754 4788888763211                    234666676    


Q ss_pred             ccee----eee--EEEEc-CCCCCCCCCcccccCCC----CHhHHHHHHH
Q 006171          212 FFRR----GLP--SLVAF-PPGCKSSDCMTRFEGEL----SVDAVTDWFA  250 (658)
Q Consensus       212 f~V~----~yP--Tl~~f-~~g~~~~~~~~~Y~G~r----s~~~Lv~fv~  250 (658)
                        |.    ++|  +.+++ ++|..    ...|.|..    ..+.+++.+.
T Consensus       113 --v~~~~~~~p~~~~~lid~~G~i----~~~~~g~~~~~~~~~~l~~~l~  156 (160)
T 1xvw_A          113 --VFNEQAGIANRGTFVVDRSGII----RFAEMKQPGEVRDQRLWTDALA  156 (160)
T ss_dssp             --CEETTTTEECSEEEEECTTSBE----EEEEECCTTCCCCHHHHHHHHH
T ss_pred             --CccccCCCeeeeEEEECCCCeE----EEEEecCCCCCCCHHHHHHHHH
Confidence              88    999  55554 56643    34455654    3455555543

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.80  E-value=1.7e-05  Score=74.03  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             CCc-EEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhh------------------hHHHhhCCCCcc
Q 006171          153 SKP-WLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA------------------THLAERKPIGQI  211 (658)
Q Consensus       153 ~~~-~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~------------------~~Lc~k~~i~k~  211 (658)
                      +++ ++|.|| ++||++|+...|.+.++++++++. +.|..|+++.....                  ..+++.|+    
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  103 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYG----  103 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTT----
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcC----
Confidence            455 999999 999999999999999999999876 47888887732221                  23566666    


Q ss_pred             cceee----eeEEEEcCCCCCCCCCcccccCCC
Q 006171          212 FFRRG----LPSLVAFPPGCKSSDCMTRFEGEL  240 (658)
Q Consensus       212 f~V~~----yPTl~~f~~g~~~~~~~~~Y~G~r  240 (658)
                        |.+    +|+.+++-..+.   ....|.|..
T Consensus       104 --v~~~~~~~P~~~lid~~G~---i~~~~~g~~  131 (161)
T 3drn_A          104 --AKGFILPARITFVIDKKGI---IRHIYNSQM  131 (161)
T ss_dssp             --CCCSSSCCCEEEEECTTSB---EEEEEECSS
T ss_pred             --CCCcCcccceEEEECCCCE---EEEEEecCC
Confidence              888    999888854332   234566733

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.79  E-value=3.7e-05  Score=75.58  Aligned_cols=43  Identities=9%  Similarity=-0.188  Sum_probs=38.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~  194 (658)
                      .++++||.|||.||+.|++..|.++++.+++++. +.|..|+|+
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4689999999999999999999999999999876 488889886

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.78  E-value=2.7e-05  Score=74.61  Aligned_cols=56  Identities=4%  Similarity=-0.187  Sum_probs=44.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHHhhCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc~k~~  207 (658)
                      .+++++|.||++||+.|+...|.++++.+++++. +.|..|+|+.        .....+.+++++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~  112 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYN  112 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcC
Confidence            4689999999999999999999999999999876 4888898862        122344666665

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.77  E-value=4.1e-05  Score=72.88  Aligned_cols=97  Identities=11%  Similarity=0.051  Sum_probs=66.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc--------chhhhHHHhh-CCCCcc----------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAER-KPIGQI----------  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e--------~~~~~~Lc~k-~~i~k~----------  211 (658)
                      .++++||.||++||+.|+...|.++++.+++++. +.|..|+|+.        .......+++ +++.-+          
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            4679999999999999999999999999999876 4788887752        2233445666 442200          


Q ss_pred             -----cc-----eeeeeE-----EEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 -----FF-----RRGLPS-----LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 -----f~-----V~~yPT-----l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                           |.     +.+.|+     +++-++|..    ...|.|..+.+.|.+.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  168 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQV----VKFWRPEEPIEVIRPDIAAL  168 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCE----EEEECTTCCGGGTHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCE----EEEECCCCCHHHHHHHHHHH
Confidence                 00     112564     555566643    45677888877777776655

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.76  E-value=1.3e-05  Score=79.05  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=58.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccccee------------------ee----------------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG------------------MV----------------------  191 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg------------------~V----------------------  191 (658)
                      +.++.++.|+++||+||+++.|..+++++.  + +++-                  .+                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--G-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            567899999999999999999999887652  2 1111                  00                      


Q ss_pred             eccc-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          192 ELGD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       192 dc~e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      .|.. -.....+++++|      |+|.||+++ .+|.       .+.|..+.+.|.+++.+
T Consensus       162 ~~~~~v~~~~~l~~~~g------V~gTPt~vi-~nG~-------~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFG------VRGTPSIVT-STGE-------LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CCSSHHHHHHHHHHHHT------CCSSCEEEC-TTSC-------CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC------CCcCCEEEE-eCCE-------EecCCCCHHHHHHHHHh
Confidence            1221 012234778888      899999987 5663       34788899999998865

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=97.74  E-value=1.5e-05  Score=71.97  Aligned_cols=94  Identities=6%  Similarity=0.010  Sum_probs=76.7

Q ss_pred             EEec-CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          139 NVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       139 ~~Lt-~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      ..|+ .++++.++.++++.+|-|+++||+.|   .+.|.++|+.+ ....+|.++..      .++++++      +. .
T Consensus        24 ~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~~~------~v~~~~~------v~-~   86 (124)
T 2l4c_A           24 TWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGISTDS------EVLTHYN------IT-G   86 (124)
T ss_dssp             EECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEECCH------HHHHHTT------CC-S
T ss_pred             eEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEChH------HHHHHcC------CC-C
Confidence            4454 46688888888999999999999998   78999999999 66789888754      2788888      76 7


Q ss_pred             eEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          218 PSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      |++++|++...   ....|.|    ..+.++|.+|+...
T Consensus        87 ~~vvlfkkfde---~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           87 NTICLFRLVDN---EQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             SCEEEEETTTT---EEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCC---CceeecCcccCCCCHHHHHHHHHHh
Confidence            99999998643   2467886    78999999999765

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.74  E-value=4.8e-05  Score=66.33  Aligned_cols=97  Identities=22%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.+++.+... .+++.++.|. +-   |....|.+..++..|. .+.|+.|...  +.++++++|+|.+.||+++|
T Consensus         5 i~~~~~f~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d--~~~~l~~~~~V~~~PT~~~~   80 (105)
T 3zzx_A            5 VKDQEDFTKQLNEA-GNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVD--ECEDIAQDNQIACMPTFLFM   80 (105)
T ss_dssp             CCSHHHHHHHHHHT-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETT--TCHHHHHHTTCCBSSEEEEE
T ss_pred             eCCHHHHHHHHHhc-CCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecc--cCHHHHHHcCCCeecEEEEE
Confidence            34433356666543 3567677553 21   2234567777877764 4566666533  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      ++|. .-..+.| .+.+.|.+||++|+
T Consensus        81 ~~G~-~v~~~~G-~~~~~l~~~i~k~K  105 (105)
T 3zzx_A           81 KNGQ-KLDSLSG-ANYDKLLELVEKNK  105 (105)
T ss_dssp             ETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             ECCE-EEEEEeC-cCHHHHHHHHHhcC
Confidence            8753 2223567 48889999999875

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.72  E-value=2.9e-06  Score=82.95  Aligned_cols=53  Identities=11%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             CCCCccc--cCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccc
Q 006171          144 EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI  196 (658)
Q Consensus       144 ~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~  196 (658)
                      .+|..+.  .+.++++|+||++||+||++++|.|   +++++.+.+.++|.+++.+.+
T Consensus       102 ~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          102 KQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            4454443  2467999999999999999999999   999999987779999998743

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.69  E-value=0.00015  Score=67.96  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             CCCcEEEEEeccCCC-CCCCChHHHHHHHHHhhcc---cceeeeeccc----chhhhHHHhhCCCCc-------------
Q 006171          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEGI---ANTGMVELGD----IRLATHLAERKPIGQ-------------  210 (658)
Q Consensus       152 ~~~~~lV~FYapwC~-~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e----~~~~~~Lc~k~~i~k-------------  210 (658)
                      .+++++|.||++||+ +|....|.+.++.++++..   +.|..|+++.    .......++++++.-             
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            468999999999999 9999999999999998754   6788888862    122233455544220             


Q ss_pred             ------------------ccceeeeeEEEEc-CCCCCCCCCcccccCCC--CHhHHHHHHHHh
Q 006171          211 ------------------IFFRRGLPSLVAF-PPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (658)
Q Consensus       211 ------------------~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~r--s~~~Lv~fv~k~  252 (658)
                                        .|.+.+.|+++++ ++|..    ...|.|..  +.+.|.+.+.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i----~~~~~g~~~~~~~~l~~~l~~l  170 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKV----LKDYNGVENTPYDDIISDVKSA  170 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEE----EEEEESSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeE----EEEEcCCCCCCHHHHHHHHHHH
Confidence                              1235678886666 44532    34566765  478888888765

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=97.68  E-value=0.00011  Score=65.49  Aligned_cols=97  Identities=15%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhc-----cCceEEEEEecccccHhHHhhcCCCCCC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYW-----AYASFAFVLWREEESSIWWNTFEVESAP  332 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~-----~~~~f~~v~~~~~~s~~l~~~f~V~~~P  332 (658)
                      ++..+ ++..+..  .+++.+|.|. +-   |....|.+..+|..|.     ..+.|+.|...  +...++++|+|.++|
T Consensus        20 l~~~~-f~~~~~~--~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~P   94 (127)
T 3h79_A           20 LTDET-FDSIVMD--PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE--KYPDVIERMRVSGFP   94 (127)
T ss_dssp             CCTTT-HHHHHTC--TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT--TCHHHHHHTTCCSSS
T ss_pred             CChhh-HHHHHhC--CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc--ccHhHHHhcCCccCC
Confidence            55555 4555532  2456566553 32   2234566666776543     34566666432  347899999999999


Q ss_pred             EEEEEeCCCC-CeeeecCCCChHHHHHHHHhh
Q 006171          333 AIVFLKDPGV-KPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       333 tlvlfk~~~~-~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      |+++|++++. .+..|.|..+.+.|.+||+++
T Consensus        95 t~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           95 TMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             EEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            9999998765 346799999999999999875

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=97.66  E-value=0.00018  Score=72.45  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=72.1

Q ss_pred             eccchhhhhhhhhcCCCcEEEE-EEe--CCCCCCcHHHHHHHHhhc--cCceEEEEEecc--cc-cHhHHhhcCCC--CC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVI-FFS--KTGERASPFVRQISRNYW--AYASFAFVLWRE--EE-SSIWWNTFEVE--SA  331 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl-~f~--~~~~~~~~~~~~~A~~~~--~~~~f~~v~~~~--~~-s~~l~~~f~V~--~~  331 (658)
                      +++.+ ++..+..   +++.+| |+.  +-|. ..|.+..+|..|.  ..+.|+.|.+.+  |+ ..+++++|+|.  ++
T Consensus        10 Lt~~n-F~~~i~~---~~~vlV~FyA~~pWCg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~   84 (240)
T 2qc7_A           10 LDTVT-FYKVIPK---SKFVLVKFDTQYPYGE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESY   84 (240)
T ss_dssp             CCTTH-HHHHGGG---CSEEEEEECCSSCCSH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGC
T ss_pred             CCHHH-HHHHHcC---CCCEEEEEeCCCCCCc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCC
Confidence            55555 4555542   334455 444  4444 6778888888885  357788886554  43 47899999999  99


Q ss_pred             CEEEEEeCCC-CCeeeecCCCChHHHHHHHHhhc
Q 006171          332 PAIVFLKDPG-VKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       332 Ptlvlfk~~~-~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      ||+++|+++. ..+..|.|..+.+.|.+|++.+.
T Consensus        85 PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           85 PVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             SEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            9999999876 45778999999999999999864

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.62  E-value=0.00017  Score=66.16  Aligned_cols=97  Identities=13%  Similarity=0.087  Sum_probs=69.7

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCCCC-----CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTGER-----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV  335 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~~~-----~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlv  335 (658)
                      +++.+ +++++..  ...+++|.|. +-+.+     ..|.+..++.+|.+.+.|+.|++.  +.++++.+|+|.+.||++
T Consensus        20 vt~~~-F~~~v~~--~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvD--e~~~la~~ygV~siPTli   94 (137)
T 2qsi_A           20 VDEAT-VDDFIAH--SGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAE--AERGLMARFGVAVCPSLA   94 (137)
T ss_dssp             ECTTT-HHHHHHT--SSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGG--GHHHHHHHHTCCSSSEEE
T ss_pred             cCHhH-HHHHHhc--CCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECC--CCHHHHHHcCCccCCEEE
Confidence            45555 5666542  2235666664 33322     578889999999888888888743  357899999999999999


Q ss_pred             EEeCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          336 FLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       336 lfk~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      +||++.. -....|..+.+.|.++++.+.
T Consensus        95 lFkdG~~-v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           95 VVQPERT-LGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEECCEE-EEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEE-EEEEeCCCCHHHHHHHHHHHh
Confidence            9998742 223578888899999988654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.62  E-value=4.7e-05  Score=73.26  Aligned_cols=91  Identities=14%  Similarity=0.071  Sum_probs=65.0

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhh-------------------------hHHHh
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA-------------------------THLAE  204 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~-------------------------~~Lc~  204 (658)
                      .+++++|.|| ++||++|....|.+.+++++++.. +.|..|+++.....                         ..+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            4578999999 999999999999999999999754 47778887632211                         23555


Q ss_pred             hCCCCccccee-----eeeEEEEcC-CCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          205 RKPIGQIFFRR-----GLPSLVAFP-PGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       205 k~~i~k~f~V~-----~yPTl~~f~-~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      .|+      |.     .+|+++++- +|..    ...+.|    .++.+.+.+.+.+.
T Consensus       110 ~~g------v~~~~g~~~P~~~liD~~G~i----~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          110 SYD------VLFNESVALRAFVLIDKQGVV----QHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             HTT------CEETTTEECCEEEEECTTSBE----EEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhC------CcCcCCceeeEEEEEcCCCEE----EEEEeCCCCCCCCHHHHHHHHHHH
Confidence            555      88     899999994 5532    233334    34577787777654

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.61  E-value=0.00018  Score=69.05  Aligned_cols=112  Identities=8%  Similarity=0.065  Sum_probs=74.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC---------C--CCCCcHHHHHHHHhhc-----cCceEEEEEecccccHhHHhh
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK---------T--GERASPFVRQISRNYW-----AYASFAFVLWREEESSIWWNT  325 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~---------~--~~~~~~~~~~~A~~~~-----~~~~f~~v~~~~~~s~~l~~~  325 (658)
                      +++.+ +++++.+. .+.+++|.|..         +  |....|.+..+|..|.     +.+.|+.|.+.+  .+.++++
T Consensus        23 lt~~n-F~~~v~~~-~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~--~~~la~~   98 (178)
T 3ga4_A           23 VTADN-YPLLSRGV-PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE--VPQLVKD   98 (178)
T ss_dssp             CCTTT-HHHHTTCC-TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT--CHHHHHH
T ss_pred             CCHHH-HHHHHccc-CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc--CHHHHHH
Confidence            56666 56666432 23455666643         1  1223678888999887     678888887543  5889999


Q ss_pred             cCCCCCCEEEEEeCCCCCe-----------eee---cC-CCChHHHHHHHHhhccCCCccccCcchh
Q 006171          326 FEVESAPAIVFLKDPGVKP-----------VVY---YG-SFNNSRLSEVMEQNKLQELPQLRSVTSM  377 (658)
Q Consensus       326 f~V~~~Ptlvlfk~~~~~p-----------~~y---~g-~~~~~~L~~fi~~~~~~~vP~lts~~~~  377 (658)
                      |+|.+.|||++|++++..+           ..|   .| ..+.+.|.+||.+..-..++-....++-
T Consensus        99 ~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I~rp~ny~  165 (178)
T 3ga4_A           99 LKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITVPQAFNVQ  165 (178)
T ss_dssp             TTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCCCCSCC--
T ss_pred             cCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccccCCCChH
Confidence            9999999999999986443           234   24 6788899999988544444333334443

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.60  E-value=1.1e-05  Score=66.11  Aligned_cols=71  Identities=11%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      ++.|+++||++|+++.+.+++.      .+.+..+|+++++......++++      +.++|++.  .+|.       . 
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g------~~~vP~~~--~~g~-------~-   60 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQG------FRQLPVVI--AGDL-------S-   60 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CCSSCEEE--ETTE-------E-
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhC------CCccCEEE--ECCE-------E-
Confidence            6789999999999988877653      24788899986544333334567      88999983  3442       1 


Q ss_pred             cCCCCHhHHHHHH
Q 006171          237 EGELSVDAVTDWF  249 (658)
Q Consensus       237 ~G~rs~~~Lv~fv  249 (658)
                      -|..+.+.|.+++
T Consensus        61 ~~g~~~~~l~~~l   73 (81)
T 1h75_A           61 WSGFRPDMINRLH   73 (81)
T ss_dssp             EESCCHHHHGGGS
T ss_pred             EecCCHHHHHHHH
Confidence            2334566665554

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.56  E-value=0.00048  Score=61.21  Aligned_cols=84  Identities=13%  Similarity=0.135  Sum_probs=62.7

Q ss_pred             CcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.| .+   .|....+.+..++..+.+.+.|+.+....  ...++++|+|..+||+++|++++.....|.|..+.
T Consensus        35 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~  112 (130)
T 2dml_A           35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK--HQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTG  112 (130)
T ss_dssp             SSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTT--CHHHHHHHTCCSSSEEEEESSCTTSCEECCSCCSH
T ss_pred             CCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCC--CHHHHHHcCCCccCEEEEEeCCCCeEEEeecCCCH
Confidence            44555555 33   23345677788888887777777776432  46799999999999999998876546668999999


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+|+...
T Consensus       113 ~~l~~~l~~~  122 (130)
T 2dml_A          113 EAIVDAALSA  122 (130)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=97.56  E-value=0.00014  Score=72.00  Aligned_cols=91  Identities=13%  Similarity=0.090  Sum_probs=66.1

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-------------------------hhHHHh
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAE  204 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-------------------------~~~Lc~  204 (658)
                      .+++++|.|| +.||+.|+...|.+.+++++++.. +.|..|+++....                         ...+++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            3589999999 999999999999999999999754 4788888774211                         123555


Q ss_pred             hCCCCccccee------eeeEEEEcC-CCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          205 RKPIGQIFFRR------GLPSLVAFP-PGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       205 k~~i~k~f~V~------~yPTl~~f~-~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      .|+      |.      ++|+++++- +|..    ...+.|    .++.++|.+.+...
T Consensus       135 ~yg------v~~~~~g~~~P~~~liD~~G~I----~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          135 DYG------VLLEGPGLALRGLFIIDPNGVI----KHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             HTT------CEETTTTEECEEEEEECTTSBE----EEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HhC------CeecCCCcccceEEEECCCCEE----EEEEecCCCCCCCHHHHHHHHHHh
Confidence            555      88      999999994 4432    222234    35678888887664

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.52  E-value=0.00011  Score=67.71  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCCCC-----CcHHHHHHHHhhccC-ceEEEEEecccccHhHHhhcCCCCCCEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTGER-----ASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAI  334 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~~~-----~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~~f~V~~~Ptl  334 (658)
                      +++.+ +++++..   ..+.+|+|. +-+.|     ..|.+..+|.+|.+. +.|+.|++.+  +++++.+|+|.+.||+
T Consensus        22 ~t~~~-F~~~v~~---~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe--~~~lA~~ygV~sIPTl   95 (140)
T 2qgv_A           22 VSESR-LDDWLTQ---APDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ--SEAIGDRFGAFRFPAT   95 (140)
T ss_dssp             CCHHH-HHHHHHT---CSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH--HHHHHHHHTCCSSSEE
T ss_pred             CCHHH-HHHHHhC---CCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC--CHHHHHHcCCccCCEE
Confidence            45544 5666642   234455663 21212     578889999999888 8888886443  5789999999999999


Q ss_pred             EEEeCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          335 VFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       335 vlfk~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      ++||+|... ....|..+.+.|.++++.+.
T Consensus        96 ilFk~G~~v-~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           96 LVFTGGNYR-GVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             EEEETTEEE-EEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEE-EEEecCCCHHHHHHHHHHHh
Confidence            999987432 23578888899999998754

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.52  E-value=5.8e-05  Score=73.39  Aligned_cols=98  Identities=10%  Similarity=0.026  Sum_probs=66.0

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC-------C------------CCc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------P------------IGQ  210 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~-------~------------i~k  210 (658)
                      .+++++|.|| +.||++|....|.+.+++++++.. +.|..|+++........++++       +            +.+
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            3579999999 999999999999999999999764 488888887432222222221       0            112


Q ss_pred             cccee------eeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          211 IFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~------~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      .|.|.      ++|+++++-+.+.   ....+.|    .++.++|.+.+...
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~---i~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQN---LRQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCE---EEEEEeCCCCCCCCHHHHHHHHHHh
Confidence            34488      9999888854332   1222333    35678888887654

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.51  E-value=6.3e-05  Score=60.34  Aligned_cols=71  Identities=8%  Similarity=-0.034  Sum_probs=48.6

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y  236 (658)
                      ++.|+++||++|+++.+.+++.      .+.+..+|.++++......++++      +.++|++..  +|.       . 
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~------~~~vP~l~~--~g~-------~-   60 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALG------YVQAPVVEV--DGE-------H-   60 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CBCCCEEEE--TTE-------E-
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcC------CCccCEEEE--CCe-------E-
Confidence            6789999999999988877654      14778888885543222223677      889999984  442       1 


Q ss_pred             cCCCCHhHHHHHH
Q 006171          237 EGELSVDAVTDWF  249 (658)
Q Consensus       237 ~G~rs~~~Lv~fv  249 (658)
                      -|..+.+.|.+++
T Consensus        61 ~~g~~~~~l~~~l   73 (75)
T 1r7h_A           61 WSGFRPERIKQLQ   73 (75)
T ss_dssp             EESCCHHHHHHHH
T ss_pred             EcCCCHHHHHHHH
Confidence            2335677777765

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.49  E-value=0.00056  Score=69.13  Aligned_cols=97  Identities=18%  Similarity=0.133  Sum_probs=70.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEE-EE--eCCCCCCcHHHHHHHHhhc---cCceEEEEEecc---cccHhHHhhcCCC--C
Q 006171          262 YTKESMGKNFLAKTGPHKVKVI-FF--SKTGERASPFVRQISRNYW---AYASFAFVLWRE---EESSIWWNTFEVE--S  330 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl-~f--~~~~~~~~~~~~~~A~~~~---~~~~f~~v~~~~---~~s~~l~~~f~V~--~  330 (658)
                      +++.+ ++..+.   .+++.+| |+  .+-|. ..|.+..+|..|.   ..+.|+.|...+   .+..+++.+|+|.  +
T Consensus        21 Lt~~n-F~~vi~---~~~~vlV~Fy~~ApWCg-l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~   95 (248)
T 2c0g_A           21 LDELS-FEKTVE---RFPYSVVKFDIASPYGE-KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN   95 (248)
T ss_dssp             CCTTT-HHHHHT---TSSEEEEEEEESSCCSH-HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTS
T ss_pred             CCHHH-HHHHHh---cCCCEEEEEECCCCCCc-cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCC
Confidence            55555 455553   2334444 55  35443 6788888998884   367788886544   1147899999999  9


Q ss_pred             CCEEEEEeCCC-CCeeee--cCCCChHHHHHHHHhhc
Q 006171          331 APAIVFLKDPG-VKPVVY--YGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       331 ~Ptlvlfk~~~-~~p~~y--~g~~~~~~L~~fi~~~~  364 (658)
                      +|||++|+ +. ..+..|  .|..+.+.|.+||+.+.
T Consensus        96 ~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           96 FPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             CCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence            99999999 65 357778  89999999999999874

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.49  E-value=0.00022  Score=65.75  Aligned_cols=99  Identities=14%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-C-----CCCCCcHHHHHHHHhhccCce--EEEEEecccccHhHHhhcCCCCCCE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-K-----TGERASPFVRQISRNYWAYAS--FAFVLWREEESSIWWNTFEVESAPA  333 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~-----~~~~~~~~~~~~A~~~~~~~~--f~~v~~~~~~s~~l~~~f~V~~~Pt  333 (658)
                      +++++ +++++...   ...+++|. .     .|....|.+..++.+| +.+.  |+.|...  +..+++++|+|.+.||
T Consensus        22 l~~~~-f~~~i~~~---~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d--~~~~la~~~~V~~iPT   94 (142)
T 2es7_A           22 VEAST-VDDWIKRV---GDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLE--QSEAIGDRFNVRRFPA   94 (142)
T ss_dssp             CCCC---------C---CSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHH--HHHHHHHTTTCCSSSE
T ss_pred             ccccc-HHHHHHhC---CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECC--CCHHHHHhcCCCcCCe
Confidence            45544 56666533   23455553 2     1233578888889888 7777  7777543  2467999999999999


Q ss_pred             EEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCC
Q 006171          334 IVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQEL  368 (658)
Q Consensus       334 lvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~v  368 (658)
                      +++|++|. ....+.|..+.+.|.++++...-...
T Consensus        95 ~~~fk~G~-~v~~~~G~~~~~~l~~~i~~~l~~~~  128 (142)
T 2es7_A           95 TLVFTDGK-LRGALSGIHPWAELLTLMRSIVDTPA  128 (142)
T ss_dssp             EEEESCC-----CEESCCCHHHHHHHHHHHHC---
T ss_pred             EEEEeCCE-EEEEEeCCCCHHHHHHHHHHHhcccc
Confidence            99997654 33347898899999999988654433

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.47  E-value=0.00023  Score=69.02  Aligned_cols=93  Identities=9%  Similarity=-0.050  Sum_probs=63.3

Q ss_pred             CCCcEEEEEeccCCCC-CCCChHHHHHHHHHhhc----ccceeeeecccc-------------------------hhhhH
Q 006171          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG----IANTGMVELGDI-------------------------RLATH  201 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~-Ck~l~P~w~~~A~~l~g----~~~vg~Vdc~e~-------------------------~~~~~  201 (658)
                      .++++||.||+.||++ |....|.+.++.+++..    .+.|..|+++..                         .....
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            4689999999999998 99999999998888863    357777887621                         01234


Q ss_pred             HHhhCCCCccccee-eee---------------EEEE-cCCCCCCCCCcccccCCCCHhHHHHHHHHhhc
Q 006171          202 LAERKPIGQIFFRR-GLP---------------SLVA-FPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (658)
Q Consensus       202 Lc~k~~i~k~f~V~-~yP---------------Tl~~-f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~  254 (658)
                      +++.|+      |. +.|               ++++ -++|..    ...|.|..+.+.+.+.+.+.+.
T Consensus       120 ~~~~~g------v~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i----~~~~~g~~~~~~~~~~i~~~l~  179 (200)
T 2b7k_A          120 ACKKYR------VYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQF----VDALGRNYDEKTGVDKIVEHVK  179 (200)
T ss_dssp             HHHHTT------C--------------CTTTCCCEEEECTTSCE----EEEECTTCCTTHHHHHHHHHHH
T ss_pred             HHHHcC------cEEeeccccCCCCCceeeecceEEEECCCCcE----EEEeCCCCCHHHHHHHHHHHHH
Confidence            666666      54 333               5444 456643    4557787888888888777644

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.43  E-value=0.00053  Score=61.99  Aligned_cols=107  Identities=10%  Similarity=0.101  Sum_probs=70.5

Q ss_pred             CCcceeeccchhhhhhhhhcCCCcEEEEEE-eCCCCC--CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCC--
Q 006171          256 LPRIFYYTKESMGKNFLAKTGPHKVKVIFF-SKTGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--  330 (658)
Q Consensus       256 lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f-~~~~~~--~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~--  330 (658)
                      +|.+..++..+ ++.+++.   ..++++.| ...+++  ..|.++.+|.+|++.+.|+.+...+  ...++.+|||.+  
T Consensus         5 ~plv~~~t~~~-f~~~~~~---~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~--~~~~a~~~gi~~~~   78 (133)
T 2djk_A            5 SPLIGEIGPET-YSDYMSA---GIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDK   78 (133)
T ss_dssp             CCCSEECCHHH-HHHHHHT---TSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSS
T ss_pred             cCceeccChHH-HHHHhcC---CCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHH--hHHHHHHcCCCccc
Confidence            45444456555 4454432   23445544 332222  3567778999999889999987442  467999999998  


Q ss_pred             CCEEEEEeCCCCCeeeec--CCCChHHHHHHHHhhccCCC
Q 006171          331 APAIVFLKDPGVKPVVYY--GSFNNSRLSEVMEQNKLQEL  368 (658)
Q Consensus       331 ~Ptlvlfk~~~~~p~~y~--g~~~~~~L~~fi~~~~~~~v  368 (658)
                      .||+++|+..+.+...+.  |.++.+.|.+|++...-..+
T Consensus        79 iPtl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           79 FPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             SSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCc
Confidence            999999996222223344  88999999999987644333

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.40  E-value=0.00011  Score=70.87  Aligned_cols=43  Identities=9%  Similarity=0.013  Sum_probs=35.2

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeec
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc  193 (658)
                      +..++.+|.|+++||++|+++.|.++++++.+.+.+.+..++.
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~   65 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPI   65 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEec
Confidence            3578899999999999999999999999988865444555544

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.38  E-value=0.00059  Score=59.23  Aligned_cols=86  Identities=16%  Similarity=0.150  Sum_probs=61.2

Q ss_pred             CcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.++.|. +   .|....+.+..++..+.+.+.|+.+....  ...++++|+|.+.||+++|+++ .....+.|..+.
T Consensus        17 ~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~   93 (112)
T 2voc_A           17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE--NQETAGKYGVMSIPTLLVLKDG-EVVETSVGFKPK   93 (112)
T ss_dssp             SSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTT--CCSHHHHTTCCSBSEEEEEETT-EEEEEEESCCCH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCC--CHHHHHHcCCCcccEEEEEeCC-EEEEEEeCCCCH
Confidence            456666553 2   22334566777888887677788776433  4679999999999999999654 333347899999


Q ss_pred             HHHHHHHHhhccC
Q 006171          354 SRLSEVMEQNKLQ  366 (658)
Q Consensus       354 ~~L~~fi~~~~~~  366 (658)
                      +.|.+|++.+.-+
T Consensus        94 ~~l~~~l~~~~~~  106 (112)
T 2voc_A           94 EALQELVNKHLLE  106 (112)
T ss_dssp             HHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999875443

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.34  E-value=9.7e-05  Score=71.04  Aligned_cols=35  Identities=14%  Similarity=0.123  Sum_probs=30.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA  186 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~  186 (658)
                      +.++.+|+|+++||+||+++.|.++++.+.+...+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v   58 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADV   58 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTE
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCe
Confidence            57889999999999999999999999998876543

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.33  E-value=0.00012  Score=72.41  Aligned_cols=97  Identities=11%  Similarity=0.045  Sum_probs=64.2

Q ss_pred             CCCcEEEEEec-cCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC-------------------CCCc
Q 006171          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------------------PIGQ  210 (658)
Q Consensus       152 ~~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~-------------------~i~k  210 (658)
                      .++++||.||+ .||++|....|.+.++.+++++. +.|..|+++........++++                   .+.+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            46799999996 99999999999999999999865 488888887432222222221                   0112


Q ss_pred             cccee------eeeEEEEcCCCCCCCCCcccccCC----CCHhHHHHHHHH
Q 006171          211 IFFRR------GLPSLVAFPPGCKSSDCMTRFEGE----LSVDAVTDWFAT  251 (658)
Q Consensus       211 ~f~V~------~yPTl~~f~~g~~~~~~~~~Y~G~----rs~~~Lv~fv~k  251 (658)
                      .|.|.      .+|+.+++-..+.   ....+.|.    +..+++++.+..
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~---I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGI---LRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSE---EEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCe---EEEEEecCCCCCCCHHHHHHHHHH
Confidence            34487      8999988854432   12333343    356677776644

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.32  E-value=0.0015  Score=65.17  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             CCCcEEEEEe-ccCCCCCC-CChHHHHHHHHHhhcc-c-ceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCG-QFSGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck-~l~P~w~~~A~~l~g~-~-~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.|| +.||++|. .-.|.+.+++++++.. + .|..|+.+........+++++
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~   91 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEK   91 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcC
Confidence            3568999999 99999999 9999999999998653 4 577777764333333444443

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.27  E-value=0.00086  Score=60.36  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=67.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC----CCCCCcHHHHHHHHhhccC---ceEEEEEecccccHhHHhhcCCCCCCEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK----TGERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAI  334 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~---~~f~~v~~~~~~s~~l~~~f~V~~~Ptl  334 (658)
                      ++..+ ++..+.   .+++.+|.|..    .|....+.+..++..+.+.   +.|+.+...  ....++++|+|..+||+
T Consensus        22 l~~~~-~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~   95 (140)
T 2dj1_A           22 LNDGN-FDNFVA---DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT--SASMLASKFDVSGYPTI   95 (140)
T ss_dssp             CCTTT-HHHHHT---TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT--TCHHHHHHTTCCSSSEE
T ss_pred             cChHh-HHHHHh---cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc--ccHHHHHHCCCCccCeE
Confidence            34444 444443   34566666643    2234567777788777654   666666432  24789999999999999


Q ss_pred             EEEeCCCCCeeeecCCCChHHHHHHHHhhccCC
Q 006171          335 VFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQE  367 (658)
Q Consensus       335 vlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~  367 (658)
                      ++|+++.  ...|.|..+.+.|.+|++...-+.
T Consensus        96 ~~~~~G~--~~~~~g~~~~~~l~~~l~~~~~~~  126 (140)
T 2dj1_A           96 KILKKGQ--AVDYDGSRTQEEIVAKVREVSQPD  126 (140)
T ss_dssp             EEEETTE--EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred             EEEECCc--EEEcCCCCCHHHHHHHHHHhcCCC
Confidence            9997653  566899999999999998865443

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.26  E-value=0.0038  Score=62.18  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=57.9

Q ss_pred             cEEEEEEe-CC---CCCCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC----eeee
Q 006171          279 KVKVIFFS-KT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK----PVVY  347 (658)
Q Consensus       279 ~v~vl~f~-~~---~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~----p~~y  347 (658)
                      ++.+|.|. +-   |....|.+..++..|.+   .+.|+.+.........++++|+|.++||+++|+++...    ...+
T Consensus        31 ~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~~~  110 (244)
T 3q6o_A           31 SAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPV  110 (244)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECTTCCSSSCEECCC
T ss_pred             CeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeEec
Confidence            56566553 32   22346777888888876   67788776543345789999999999999999975432    2234


Q ss_pred             cCCCChHHHHHHHHhh
Q 006171          348 YGSFNNSRLSEVMEQN  363 (658)
Q Consensus       348 ~g~~~~~~L~~fi~~~  363 (658)
                      .| .+.+.|.+++...
T Consensus       111 ~g-~~~~~l~~~i~~~  125 (244)
T 3q6o_A          111 AG-ADVQTLRERLIDA  125 (244)
T ss_dssp             TT-CCHHHHHHHHHHH
T ss_pred             CC-CCHHHHHHHHHHH
Confidence            55 5888888877654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.24  E-value=0.00096  Score=60.22  Aligned_cols=83  Identities=19%  Similarity=0.291  Sum_probs=60.5

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|. ..|   ....+.+..++..|.+.+.|+.|....  ...++++|+|.++|++++|..++. ...+.|..+.
T Consensus        51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~~g~-~~~~~G~~~~  127 (141)
T 3hxs_A           51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK--EPELARDFGIQSIPTIWFVPMKGE-PQVNMGALSK  127 (141)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEECSSSC-CEEEESCCCH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCC--CHHHHHHcCCCCcCEEEEEeCCCC-EEEEeCCCCH
Confidence            456666553 322   223566677888887777777776432  478999999999999999966553 4468999999


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+||+..
T Consensus       128 ~~l~~~l~~~  137 (141)
T 3hxs_A          128 EQLKGYIDKV  137 (141)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.22  E-value=5.4e-05  Score=65.34  Aligned_cols=59  Identities=8%  Similarity=0.097  Sum_probs=42.1

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch----hhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~----~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.|+++||++|+++.|.+++++....   .+..+|.+.+.    ....|++.++      +.++|++.  .+|
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~---~~~~vdi~~~~~~~~~~~~l~~~~g------~~~vP~i~--~~g   76 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQDYLQQLTG------ARTVPRVF--IGK   76 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHHHHHHHHS------CCCSCEEE--ETT
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCC---ccEEEEccCCCCHHHHHHHHHHHhC------CCCcCeEE--ECC
Confidence            677999999999999988877643321   27778887541    1234777788      88999983  355

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.21  E-value=0.00032  Score=68.96  Aligned_cols=92  Identities=12%  Similarity=0.031  Sum_probs=64.3

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhh-------------------------hHHHh
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA-------------------------THLAE  204 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~-------------------------~~Lc~  204 (658)
                      .+++++|.|| ++||+.|+...|.+.+++++++.. +.|..|+++.....                         ..+++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            4578999999 999999999999999999999753 47777777632111                         23455


Q ss_pred             hCCCCccccee-----eeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          205 RKPIGQIFFRR-----GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       205 k~~i~k~f~V~-----~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      .|+      |.     ..|+.+++-+.+.   ....+.|    .++.+.|.+.+...
T Consensus       131 ~yg------v~~~~g~~~p~~~lID~~G~---i~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          131 DYN------VLFDDSVSLRAFVLIDMNGI---VQHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HTT------CEETTTEECEEEEEECTTSB---EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HhC------CccccCCcccEEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHHH
Confidence            555      88     8998888754433   1222333    35688888887654

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.20  E-value=0.0025  Score=55.10  Aligned_cols=97  Identities=19%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAI  334 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptl  334 (658)
                      ++..+ ++..+..   +++.+|+|. +   .|....+.+..++..+.+   .+.|+.+....  ...++++|+|.+.|++
T Consensus        12 l~~~~-~~~~~~~---~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~   85 (120)
T 1mek_A           12 LRKSN-FAEALAA---HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             CCTTT-HHHHHHH---CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSSEE
T ss_pred             echhh-HHHHHcc---CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC--CHHHHHHCCCCcccEE
Confidence            44444 4455542   346566553 2   344456777778877753   45666665332  3579999999999999


Q ss_pred             EEEeCCCC-CeeeecCCCChHHHHHHHHhhc
Q 006171          335 VFLKDPGV-KPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       335 vlfk~~~~-~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      ++|+++.. .+..|.|..+.+.|.+|++...
T Consensus        86 ~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           86 KFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             EEEeCCCcCCcccccCccCHHHHHHHHHhcc
Confidence            99987653 2356889989999999998753

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.20  E-value=0.00076  Score=57.46  Aligned_cols=95  Identities=13%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ ++..+..   +++.++.|.. .|   ....+.+..++..+.+.+.|+.+...  ....++++|+|.+.|++++|
T Consensus         9 l~~~~-~~~~~~~---~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~   82 (109)
T 3tco_A            9 LTEEN-FDEVIRN---NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD--ENQKIADKYSVLNIPTTLIF   82 (109)
T ss_dssp             CCTTT-HHHHHHH---SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             ecHHH-HHHHHhc---CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccc--cCHHHHHhcCcccCCEEEEE
Confidence            44444 5555543   3566666643 22   12346667788888777878877643  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|..+.+.|.++++..
T Consensus        83 ~~g~-~~~~~~g~~~~~~l~~~l~~~  107 (109)
T 3tco_A           83 VNGQ-LVDSLVGAVDEDTLESTVNKY  107 (109)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHHH
T ss_pred             cCCc-EEEeeeccCCHHHHHHHHHHH
Confidence            6653 333478988999999998764

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.20  E-value=0.0002  Score=72.03  Aligned_cols=89  Identities=9%  Similarity=-0.003  Sum_probs=58.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeee---------------------------------------
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE---------------------------------------  192 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vd---------------------------------------  192 (658)
                      +.++.++.|+.+||++|+++.|..+++.+.  +.++|..++                                       
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~  173 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  173 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCc
Confidence            456789999999999999999998887654  322222111                                       


Q ss_pred             -------cc-cchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          193 -------LG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       193 -------c~-e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                             |. .-.....+++++|      |+|.||+++...++.    +....|..+.+.|.+++.+.
T Consensus       174 ~~~~~~~~~~~v~~~~~l~~~~g------v~gtPt~vi~~~~G~----~~~~~G~~~~~~L~~~l~~~  231 (241)
T 1v58_A          174 PANVSTEQMKVLSDNEKLMDDLG------ANVTPAIYYMSKENT----LQQAVGLPDQKTLNIIMGNK  231 (241)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHT------CCSSCEEEEEETTTE----EEEEESSCCHHHHHHHTTC-
T ss_pred             cccCCHHHHHHHHHHHHHHHHcC------CCCCCEEEEECCCCC----EEEecCCCCHHHHHHHHHHH
Confidence                   11 0011233677777      899999999763222    23467988999988887543

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.20  E-value=0.00022  Score=66.25  Aligned_cols=96  Identities=11%  Similarity=0.062  Sum_probs=61.5

Q ss_pred             CCcEEEEEec-cCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCC------------Ccccceee--
Q 006171          153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRRG--  216 (658)
Q Consensus       153 ~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i------------~k~f~V~~--  216 (658)
                      +++++|.||+ .||++|....|.+.++.+++++. +.|..|+++........++++++            .+.|.+..  
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            5689999998 99999999999999999999865 47778888733222333333221            12233665  


Q ss_pred             ----------eeEEEEcCCCCCCCCCcccccCC---CCHhHHHHHHHH
Q 006171          217 ----------LPSLVAFPPGCKSSDCMTRFEGE---LSVDAVTDWFAT  251 (658)
Q Consensus       217 ----------yPTl~~f~~g~~~~~~~~~Y~G~---rs~~~Lv~fv~k  251 (658)
                                .|+.+++-+.+.   ....|.|.   ...+.+++.+.+
T Consensus       115 ~~~~~~~~~~~p~~~lid~~G~---i~~~~~~~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A          115 NMYGKQVLGIERSTFLLSPEGQ---VVQAWRKVKVAGHADAVLAALKA  159 (163)
T ss_dssp             EETTEEEEEECCEEEEECTTSC---EEEEECSCCSTTHHHHHHHHHHH
T ss_pred             ccccccccCcceEEEEECCCCe---EEEEEcCCCcccCHHHHHHHHHH
Confidence                      899988854433   12233332   234556655544

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.19  E-value=0.00087  Score=56.87  Aligned_cols=83  Identities=19%  Similarity=0.240  Sum_probs=59.3

Q ss_pred             CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.++.|. +.|   ....+.+..++..|.+.+.|+.+....  ...++++|+|.+.||+++|+++. ....+.|..+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~g~~~   94 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE--NPSTAAKYEVMSIPTLIVFKDGQ-PVDKVVGFQP   94 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSBSEEEEEETTE-EEEEEESCCC
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcccCEEEEEeCCe-EEEEEeCCCC
Confidence            3456666664 322   223466677888887777787776433  57899999999999999998543 3334789889


Q ss_pred             hHHHHHHHHh
Q 006171          353 NSRLSEVMEQ  362 (658)
Q Consensus       353 ~~~L~~fi~~  362 (658)
                      .+.|.+++++
T Consensus        95 ~~~l~~~l~~  104 (106)
T 3die_A           95 KENLAEVLDK  104 (106)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.16  E-value=0.00098  Score=58.98  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=66.0

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeCCC---CCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~~~---~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ +++.+.+    .+.|.|+.+.|   ....+.+..++..+.+ .+.|+.+...  +...++++|+|..+||+++|
T Consensus        12 l~~~~-f~~~~~~----~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~   84 (126)
T 1x5e_A           12 ITDEN-WRELLEG----DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT--EQPGLSGRFIINALPTIYHC   84 (126)
T ss_dssp             CCTTT-HHHHTSS----EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             ecHHH-HHHHhCC----CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECc--CCHHHHHHcCCcccCEEEEE
Confidence            44444 4444432    25444554432   2234566667777764 5777777543  24679999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhhccCCCcc
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQ  370 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~  370 (658)
                      +++.  ...+.|..+.+.|.+|++......+..
T Consensus        85 ~~G~--~~~~~G~~~~~~l~~~l~~~~~~~~~~  115 (126)
T 1x5e_A           85 KDGE--FRRYQGPRTKKDFINFISDKEWKSIEP  115 (126)
T ss_dssp             ETTE--EEECCSCCCHHHHHHHHHTCGGGGSCE
T ss_pred             eCCe--EEEeecCCCHHHHHHHHHHHhhccCCC
Confidence            7653  456889999999999999865544443

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.12  E-value=0.0003  Score=65.62  Aligned_cols=63  Identities=16%  Similarity=0.082  Sum_probs=47.8

Q ss_pred             CCCcEEEEEeccC-CCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171          152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       152 ~~~~~lV~FYapw-C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      .+++++|.||+.| |++|+...|.++++.+++ ..+.+..|+++........+++++      +..||.+.
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~------~~~~~~~~  106 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANG------IDKVETLS  106 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSS------CTTEEEEE
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcC------CCCceEee
Confidence            4679999999999 999999999999999999 556888888874433334555555      44566443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.12  E-value=0.0025  Score=64.96  Aligned_cols=99  Identities=9%  Similarity=0.177  Sum_probs=70.7

Q ss_pred             eeccchhhhhhhhhcCCCcEEEEEE-e---CCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          261 YYTKESMGKNFLAKTGPHKVKVIFF-S---KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       261 ~it~~~~~~~Fl~~~~~~~v~vl~f-~---~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      .++..+ +++.+... .+++.+|.| .   ..|....|.+..++..|.+.+.|+.|....  ...++++|+|.++||+++
T Consensus        11 ~~~~~~-f~~~~~~~-~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   86 (287)
T 3qou_A           11 NINESN-LQQVLEQS-MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRAIPTVYL   86 (287)
T ss_dssp             ECCTTT-HHHHHTTT-TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCSSSEEEE
T ss_pred             ECCHHH-HHHHHHhc-CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCCCCeEEE
Confidence            356555 55566432 245555555 3   345557788888999888778888876433  478999999999999999


Q ss_pred             EeCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          337 LKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       337 fk~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      |+++. ....+.|..+.+.+.+|+....
T Consensus        87 ~~~G~-~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           87 FQNGQ-PVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EETTE-EEEEEESCCCHHHHHHHHHHHS
T ss_pred             EECCE-EEEEeeCCCCHHHHHHHHHHHc
Confidence            98652 2234789889999999998753

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.11  E-value=0.0012  Score=63.34  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=29.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG  184 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g  184 (658)
                      +.++.+++|+++||++|.++.|...++.+.+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~   53 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS   53 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC
Confidence            467899999999999999999999999887754

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=97.11  E-value=0.0011  Score=59.06  Aligned_cols=71  Identities=13%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          289 GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       289 ~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      +....|.+..++..|.+.+.|+.+....  ...++++|+|.++||+++|++|. ....+.|..+.+.|.+|++.
T Consensus        50 C~~~~p~~~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~  120 (123)
T 1oaz_A           50 CKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSKGQLKEFLDA  120 (123)
T ss_dssp             CCTTHHHHTTC-------CEEEEEETTS--CTTTGGGGTCCBSSEEEEEESSS-EEEEEESCCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCccCEEEEEECCE-EEEEEeCCCCHHHHHHHHHH
Confidence            3344677777777776667777776433  46799999999999999996543 33347898899999999976

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.10  E-value=0.00076  Score=57.87  Aligned_cols=96  Identities=17%  Similarity=0.341  Sum_probs=64.6

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ ++..+..  .+++.+|.|. +.|   ....+.+..++..|.+.+.|+.+....  ...++++|+|.+.||+++|
T Consensus         9 l~~~~-~~~~~~~--~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~   83 (111)
T 3gnj_A            9 LDTNT-FEQLIYD--EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE--EKTLFQRFSLKGVPQILYF   83 (111)
T ss_dssp             CCHHH-HHHHHTT--SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSCEEEEE
T ss_pred             cCHHH-HHHHHHh--cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc--ChhHHHhcCCCcCCEEEEE
Confidence            34444 4444422  2345566554 322   223556677888887678888886443  5789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|..+.+.|.+|++..
T Consensus        84 ~~g~-~~~~~~g~~~~~~l~~~l~~~  108 (111)
T 3gnj_A           84 KDGE-YKGKMAGDVEDDEVEQMIADV  108 (111)
T ss_dssp             ETTE-EEEEEESSCCHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeccCCHHHHHHHHHHH
Confidence            7653 333578988999999998764

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=97.09  E-value=0.0076  Score=67.28  Aligned_cols=86  Identities=13%  Similarity=0.088  Sum_probs=60.3

Q ss_pred             CcEEEEEEe-CC---CCCCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC---Ceeee
Q 006171          278 HKVKVIFFS-KT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV---KPVVY  347 (658)
Q Consensus       278 ~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~---~p~~y  347 (658)
                      +++.+|.|. +-   |....|.+..++..|.+   .+.|+.|.....+...++++|+|.++||+++|+++..   ....+
T Consensus        30 ~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~  109 (519)
T 3t58_A           30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLP  109 (519)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEEC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcCcccCCCceeEe
Confidence            356666553 31   22346777888888876   5777777654334578999999999999999996432   22345


Q ss_pred             cCCCChHHHHHHHHhh
Q 006171          348 YGSFNNSRLSEVMEQN  363 (658)
Q Consensus       348 ~g~~~~~~L~~fi~~~  363 (658)
                      .|..+.+.|.+++.+.
T Consensus       110 ~g~~~~~~L~~~l~~~  125 (519)
T 3t58_A          110 GAGANVQTLRMRLIDA  125 (519)
T ss_dssp             CSSCCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHH
Confidence            6778888888887664

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.08  E-value=0.00076  Score=66.81  Aligned_cols=98  Identities=8%  Similarity=0.009  Sum_probs=65.8

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC-------CC------------Cc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------PI------------GQ  210 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~-------~i------------~k  210 (658)
                      .+++++|.|| +.||+.|....|.+.++.++++.. +.|..|+++........++++       ++            .+
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            4578999999 999999999999999999999653 477777776432333344443       11            12


Q ss_pred             ccce-----eeeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          211 IFFR-----RGLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V-----~~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      .|.|     ...|+.+++-+.+.   ....+.|    .++.++|++.+.+.
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~---I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGC---VRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSB---EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCe---EEEEEecCCCCCCCHHHHHHHHHHH
Confidence            4557     36899988864433   1222333    35678888887654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.04  E-value=0.0019  Score=55.54  Aligned_cols=84  Identities=13%  Similarity=0.194  Sum_probs=58.7

Q ss_pred             CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+++|. +.|   ....+.+..++..+.+.+.|+.+....  ...++++|+|...|++++|+++. ....+.|..+
T Consensus        24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~g~~~  100 (115)
T 1thx_A           24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRLVKGEQ-ILDSTEGVIS  100 (115)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEEEETTE-EEEEEESCCC
T ss_pred             CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCceeEEEEEcCCE-EEEEecCCCC
Confidence            3455566554 322   123456666788877677788776433  46799999999999999996543 3334788889


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.+|+++.
T Consensus       101 ~~~l~~~l~~~  111 (115)
T 1thx_A          101 KDKLLSFLDTH  111 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=97.04  E-value=0.0011  Score=57.99  Aligned_cols=90  Identities=23%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +++.+... .+++.+|.|. +-|   ....+.+..++..|.+ +.|+.|...  +...++++|+|.+.||+++|+++. .
T Consensus        22 f~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~-~   96 (116)
T 3qfa_C           22 FQEALDAA-GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVD--DCQDVASECEVKSMPTFQFFKKGQ-K   96 (116)
T ss_dssp             HHHHHHHH-TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETT--TTHHHHHHTTCCSSSEEEEESSSS-E
T ss_pred             HHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC--CCHHHHHHcCCccccEEEEEeCCe-E
Confidence            56666533 3445566553 322   2234566667777755 677777543  347899999999999999996543 3


Q ss_pred             eeeecCCCChHHHHHHHHhh
Q 006171          344 PVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       344 p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ...+.|. +.+.|.+++++.
T Consensus        97 ~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           97 VGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEcCC-CHHHHHHHHHHh
Confidence            3346788 899999998763

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.04  E-value=0.0011  Score=56.36  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             CCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+++|.. .|   ....+.+..++..+.+.+.|+.+...+  ...++++|+|...|++++|+++. ....+.|..+
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~   95 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD--NPETPNAYQVRSIPTLMLVRDGK-VIDKKVGALP   95 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTT--CCHHHHHTTCCSSSEEEEEETTE-EEEEEESCCC
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCC--CHHHHHhcCCCccCEEEEEeCCE-EEEEecCCCC
Confidence            34566666643 22   112455566777776667777775433  46799999999999999996543 3334789889


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.+|++++
T Consensus        96 ~~~l~~~l~~~  106 (107)
T 2i4a_A           96 KSQLKAWVESA  106 (107)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.03  E-value=0.00098  Score=58.57  Aligned_cols=83  Identities=13%  Similarity=0.146  Sum_probs=57.2

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|+|. +.|   ....+.+..++..+.+.+.|+.+....  ...++++|+|...|++++|+++. ....+.|..+.
T Consensus        31 ~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~  107 (119)
T 1w4v_A           31 ETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSAVPTVLAMKNGD-VVDKFVGIKDE  107 (119)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTT--THHHHHHTTCCSSSEEEEEETTE-EEEEEESCCCH
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCcccEEEEEeCCc-EEEEEcCCCCH
Confidence            455566554 322   123455566777776677777775432  46799999999999999997543 33347888899


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+|+++.
T Consensus       108 ~~l~~~l~~~  117 (119)
T 1w4v_A          108 DQLEAFLKKL  117 (119)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.02  E-value=0.0021  Score=57.85  Aligned_cols=87  Identities=16%  Similarity=0.276  Sum_probs=60.8

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|. +.|   ....+.+..++..|.+.+.|+.+....  ...++++|+|...||+++|..++. .+.+.|..+.
T Consensus        38 ~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~~G~-~~~~~G~~~~  114 (136)
T 2l5l_A           38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK--EQELAGAFGIRSIPSILFIPMEGK-PEMAQGAMPK  114 (136)
T ss_dssp             SSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSCEEEEECSSSC-CEEEESCCCH
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCC--CHHHHHHcCCCCCCEEEEECCCCc-EEEEeCCCCH
Confidence            455566554 322   123456666788887677777776432  467999999999999999943333 3468899999


Q ss_pred             HHHHHHHHhhccCC
Q 006171          354 SRLSEVMEQNKLQE  367 (658)
Q Consensus       354 ~~L~~fi~~~~~~~  367 (658)
                      +.|.+|+++..-..
T Consensus       115 ~~l~~~l~~~~~~~  128 (136)
T 2l5l_A          115 ASFKKAIDEFLLKK  128 (136)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999998865443

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.0014  Score=58.24  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=59.0

Q ss_pred             CcEEEEEEeC-C---CCCCcHHHHHHHHhhc----cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecC
Q 006171          278 HKVKVIFFSK-T---GERASPFVRQISRNYW----AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYG  349 (658)
Q Consensus       278 ~~v~vl~f~~-~---~~~~~~~~~~~A~~~~----~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g  349 (658)
                      +++.+|.|.. .   |....+.+..++..+.    ..+.|+.+....  ...++++|+|..+||+++|+++ .....|.|
T Consensus        25 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~g-~~~~~~~G  101 (133)
T 1x5d_A           25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRGFPTIKIFQKG-ESPVDYDG  101 (133)
T ss_dssp             SSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCSSSEEEEEETT-EEEEEECS
T ss_pred             CCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCeeCeEEEEeCC-CceEEecC
Confidence            4566666643 2   2234566677777776    566677665332  4679999999999999999974 34455889


Q ss_pred             CCChHHHHHHHHhh
Q 006171          350 SFNNSRLSEVMEQN  363 (658)
Q Consensus       350 ~~~~~~L~~fi~~~  363 (658)
                      ..+.+.|.+|+...
T Consensus       102 ~~~~~~l~~~l~~~  115 (133)
T 1x5d_A          102 GRTRSDIVSRALDL  115 (133)
T ss_dssp             CCSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            98999999998864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.00  E-value=0.0011  Score=64.61  Aligned_cols=78  Identities=15%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCccc
Q 006171          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQL  371 (658)
Q Consensus       292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~l  371 (658)
                      ..|.+..++..+.+.+.|+.|....  ...++++|+|.++||+++|+++. ....+.|..+.+.|.+|++...-+.+.+|
T Consensus       132 ~~p~~~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~l~~~~~~i  208 (210)
T 3apq_A          132 LAPTWREFAKEVDGLLRIGAVNCGD--DRMLCRMKGVNSYPSLFIFRSGM-AAVKYNGDRSKESLVAFAMQHVRSTVTEL  208 (210)
T ss_dssp             HHHHHHHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEECTTS-CCEECCSCCCHHHHHHHHHHHHHCCSSCC
T ss_pred             HHHHHHHHHHHhcCceEEEEEECCc--cHHHHHHcCCCcCCeEEEEECCC-ceeEecCCCCHHHHHHHHHHhCcccceec
Confidence            3566777888887777788776432  47899999999999999996654 44568899999999999998765555554


Q ss_pred             c
Q 006171          372 R  372 (658)
Q Consensus       372 t  372 (658)
                      +
T Consensus       209 ~  209 (210)
T 3apq_A          209 S  209 (210)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=96.99  E-value=0.00084  Score=59.84  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             CCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+|.|.. .|   ....+.+..++..|.+.+.|+.|....  ...++++|+|.+.||+++|+++ .....+.|..+
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~  117 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK--NESLARKFSVKSLPTIILLKNK-TMLARKDHFVS  117 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGG--CHHHHHHTTCCSSSEEEEEETT-EEEEEESSCCC
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCCcCEEEEEECC-EEEEEecCCCC
Confidence            45676776643 22   223566667888777667777775432  4789999999999999999754 33344789899


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.+|++++
T Consensus       118 ~~~l~~~l~~~  128 (128)
T 3ul3_B          118 SNDLIALIKKH  128 (128)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998753

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.99  E-value=0.0013  Score=56.15  Aligned_cols=84  Identities=13%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             CCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.++.|.. .|   ....+.+..++..|.+.+.|+.+....  ...++++|+|.+.||+++|+++. ....+.|..+
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~   95 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALS   95 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CTTHHHHTTCCSSSEEEEEETTE-EEEEEESCCC
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCC--CHHHHHHcCCcccCEEEEEeCCE-EEEEEecCCC
Confidence            34566666643 22   123455666777776667777765432  46799999999999999997543 3334789889


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.+|+++.
T Consensus        96 ~~~l~~~l~~~  106 (108)
T 2trx_A           96 KGQLKEFLDAN  106 (108)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=96.97  E-value=0.003  Score=62.24  Aligned_cols=42  Identities=10%  Similarity=-0.145  Sum_probs=36.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~  194 (658)
                      .++++||.|+|.||+.|+ -.|.++++.+++++.. .|-.|+|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            468999999999999999 7899999999997654 88888885

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=96.97  E-value=0.0008  Score=63.64  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=35.0

Q ss_pred             CCCcEEEEEeccC-CCCCCCChHHHHHHHHHhhcccceeeeecc
Q 006171          152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapw-C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~  194 (658)
                      .+++++|.||+.| |+.|+...|.++++.++  ..+.|..|+.+
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D   84 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKD   84 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECC
Confidence            3679999999999 99999999999999988  33577777776

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=96.97  E-value=0.00039  Score=64.43  Aligned_cols=93  Identities=8%  Similarity=0.009  Sum_probs=57.5

Q ss_pred             CcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCC------------Ccccceeeee--
Q 006171          154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI------------GQIFFRRGLP--  218 (658)
Q Consensus       154 ~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i------------~k~f~V~~yP--  218 (658)
                      ++++|.|| +.||+.|....|.+.++.++++....|..|+++........++++++            .+.|.+...|  
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~  115 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  115 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence            36888888 99999999999999999999975447777777633222223333221            1234477888  


Q ss_pred             -----EEEEcCCCCCCCCCcccccCCCC---HhHHHHHHHH
Q 006171          219 -----SLVAFPPGCKSSDCMTRFEGELS---VDAVTDWFAT  251 (658)
Q Consensus       219 -----Tl~~f~~g~~~~~~~~~Y~G~rs---~~~Lv~fv~k  251 (658)
                           ++++ ++|..    ...+.|...   .+.+++-+.+
T Consensus       116 g~~~~~~li-~~G~i----~~~~~g~~~~~~~~~~~~~l~~  151 (159)
T 2a4v_A          116 GSIRSHFIF-VDGKL----KFKRVKISPEVSVNDAKKEVLE  151 (159)
T ss_dssp             CBCCEEEEE-ETTEE----EEEEESCCHHHHHHHHHHHHHH
T ss_pred             CccceEEEE-cCCEE----EEEEccCCccccHHHHHHHHHH
Confidence                 5666 76643    344555443   2344444443

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.96  E-value=0.0016  Score=55.71  Aligned_cols=94  Identities=14%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAI  334 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptl  334 (658)
                      ++..+ +++.+.    +++.++.|. +.|   ....+.+..++..+..   .+.|+.+..  .....++++|+|.++||+
T Consensus        10 l~~~~-~~~~~~----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~--~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A           10 LTENN-FDDTIA----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC--TAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             CCTTT-HHHHHH----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEET--TTCHHHHHHTTCCSSSEE
T ss_pred             cChhh-HHHHhc----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEec--cccHhHHHhcCCCcccEE
Confidence            45544 555554    335566554 322   1234555556665532   344555543  234789999999999999


Q ss_pred             EEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          335 VFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       335 vlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ++|+++. ....+.|..+.+.|.+|++++
T Consensus        83 ~~~~~g~-~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGGK-KVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETTE-EEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEeCCc-EEEeccCCcCHHHHHHHHHhc
Confidence            9997653 334578999999999999875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.92  E-value=0.003  Score=53.43  Aligned_cols=90  Identities=23%  Similarity=0.252  Sum_probs=60.2

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +++.+... .+++.++.|. +.|   ....+.+..++..|.+ +.|..+...  +...++++|+|.+.||+++|+++. .
T Consensus        11 ~~~~l~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~   85 (105)
T 3m9j_A           11 FQEALDAA-GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVD--DCQDVASESEVKSMPTFQFFKKGQ-K   85 (105)
T ss_dssp             HHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETT--TCHHHHHHTTCCBSSEEEEEETTE-E
T ss_pred             HHHHHHhc-CCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhh--hhHHHHHHcCCCcCcEEEEEECCe-E
Confidence            55666533 3456666554 322   1234566667777754 677776543  357899999999999999997653 3


Q ss_pred             eeeecCCCChHHHHHHHHhh
Q 006171          344 PVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       344 p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ...+.|. +.+.|.+++++.
T Consensus        86 ~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           86 VGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             EEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEeCC-CHHHHHHHHHHh
Confidence            3346788 889999998763

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.91  E-value=0.00076  Score=59.20  Aligned_cols=83  Identities=7%  Similarity=0.005  Sum_probs=57.4

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC---
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS---  350 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~---  350 (658)
                      +++.++.|. +.|   ....+.+..++..+.+.+.|+.+....  ...++++|+|.+.||+++|++++. ...+.|.   
T Consensus        21 ~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~~~~-~~~~~g~~~~   97 (122)
T 3aps_A           21 KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQA--YPQTCQKAGIKAYPSVKLYQYERA-KKSIWEEQIN   97 (122)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEEEEGG-GTEEEEEEEC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcC--CHHHHHHcCCCccceEEEEeCCCc-cceeeccccC
Confidence            455566554 322   223466666788887677777776433  467999999999999999977654 2335553   


Q ss_pred             -CChHHHHHHHHhh
Q 006171          351 -FNNSRLSEVMEQN  363 (658)
Q Consensus       351 -~~~~~L~~fi~~~  363 (658)
                       .+.+.|.+|++..
T Consensus        98 ~~~~~~l~~~l~~~  111 (122)
T 3aps_A           98 SRDAKTIAALIYGK  111 (122)
T ss_dssp             CSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence             7889999998764

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=96.90  E-value=0.00056  Score=57.10  Aligned_cols=54  Identities=11%  Similarity=0.169  Sum_probs=39.8

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhC-CCCcccceeeeeEEEE
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERK-PIGQIFFRRGLPSLVA  222 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~-~i~k~f~V~~yPTl~~  222 (658)
                      -++.|+++||++|+++.+.+++..      +.+..+|.+ ......+.+.+ +      +.++|++.+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~-~~~~~~l~~~~~~------~~~vP~l~~   61 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDAS-TSLRQEMVQRANG------RNTFPQIFI   61 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSC-HHHHHHHHHHHHS------SCCSCEEEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECC-HHHHHHHHHHhCC------CCCcCEEEE
Confidence            477899999999999888777642      356777776 22334577777 7      779999853

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.89  E-value=0.0017  Score=59.34  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ ++..+   ..+++.+|.|. +.+   ....+.+..++..|.+.+.|+.|...  +...++++|+|.++||+++|
T Consensus        43 l~~~~-~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~  116 (148)
T 3p2a_A           43 ATAET-LDKLL---QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTE--AEPALSTRFRIRSIPTIMLY  116 (148)
T ss_dssp             CCTTT-HHHHT---TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             cCHHH-HHHHH---hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECc--CCHHHHHHCCCCccCEEEEE
Confidence            34433 45554   23456566554 322   22356677788888777777777543  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|..+.+.|.+|++..
T Consensus       117 ~~G~-~~~~~~G~~~~~~l~~~l~~~  141 (148)
T 3p2a_A          117 RNGK-MIDMLNGAVPKAPFDNWLDEQ  141 (148)
T ss_dssp             ETTE-EEEEESSCCCHHHHHHHHHHH
T ss_pred             ECCe-EEEEEeCCCCHHHHHHHHHHH
Confidence            8543 333478999999999999874

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.89  E-value=0.0018  Score=54.96  Aligned_cols=95  Identities=18%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ ++..+..   +++.+++|.. .|   ....+.+..++..+.+.+.|..+....  ...++++|+|.+.|++++|
T Consensus         6 l~~~~-~~~~~~~---~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            6 VTDQN-FDETLGQ---HPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMSIPTVILF   79 (109)
T ss_dssp             CCTTT-HHHHHHH---CSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             ccHhH-HHHHhcC---CCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC--CHhHHHhCCCCcCCEEEEE
Confidence            34444 3444432   3466666643 22   122455666777777667777775432  4679999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|..+.+.|.+|++..
T Consensus        80 ~~g~-~~~~~~g~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           80 KDGQ-PVEVLVGAQPKRNYQAKIEKH  104 (109)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHHHTT
T ss_pred             eCCc-EeeeEeCCCCHHHHHHHHHHH
Confidence            6543 223478988899999999864

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.88  E-value=0.001  Score=60.42  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=59.9

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|. +.|   ....+.+..++..+.+.+.|+.|....  ...++++|+|.++||+++|+++. ....+.|..+.
T Consensus        24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~  100 (140)
T 3hz4_A           24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQGTPTFKFFCHGR-PVWEQVGQIYP  100 (140)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCEESEEEEEETTE-EEEEEESSCCH
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCc--CHhHHHHCCCCcCCEEEEEeCCc-EEEEEcCCCCH
Confidence            456566554 322   223566677888887778888886433  47899999999999999997653 33357898899


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+|++..
T Consensus       101 ~~l~~~l~~~  110 (140)
T 3hz4_A          101 SILKNAVRDM  110 (140)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.87  E-value=0.0015  Score=58.44  Aligned_cols=84  Identities=13%  Similarity=0.235  Sum_probs=59.2

Q ss_pred             CCcEEEEEEeC-C---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFSK-T---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~~-~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+|+|.. .   |....+.+..++..|.+.+.|+.+...+  ...++++|+|...||+++|+++. ....+.|..+
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~  115 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALS  115 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTT--CCTTSGGGTCCSSSEEEEEETTE-EEEEEESCCC
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCccCEEEEEeCCE-EEEEEcCCCC
Confidence            34566666643 2   2234567777888887667777775433  46799999999999999996543 3334789889


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.+|+++.
T Consensus       116 ~~~l~~~l~~~  126 (128)
T 2o8v_B          116 KGQLKEFLDAN  126 (128)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.86  E-value=0.0011  Score=56.70  Aligned_cols=83  Identities=11%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.++.|. +.|   ....|.+..++..| +.+.|+.+....  ...++++|+|.+.||+++|+++. ....+.|..+
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~g~~~   92 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENY-NYVEKIEILLQD--MQEIAGRYAVFTGPTVLLFYNGK-EILRESRFIS   92 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTC-TTEEEEEEEECC--C---------CCCCEEEEEETTE-EEEEEESSCC
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHc-CCceEEEEECCC--CHHHHHhcCCCCCCEEEEEeCCe-EEEEEeCCcC
Confidence            3456666664 322   22356666677776 356677765433  46799999999999999998543 3334688889


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.+++++.
T Consensus        93 ~~~l~~~l~~~  103 (105)
T 4euy_A           93 LENLERTIQLF  103 (105)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999999763

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=96.85  E-value=0.0012  Score=64.87  Aligned_cols=98  Identities=13%  Similarity=0.025  Sum_probs=64.6

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC-------CC------------Cc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------PI------------GQ  210 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~-------~i------------~k  210 (658)
                      .+++++|.|| +.||++|..-.|.+.++.++++.. +.|..|+++........++++       ++            .+
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            3578999999 999999999999999999999754 477777776432222333332       11            12


Q ss_pred             cccee------eeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          211 IFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~------~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      .|.|.      ..|+.+++-+.+.   ....+.|    .++.+++++.+...
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~---I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGI---LRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHHh
Confidence            34463      6899988865443   1222333    25778888877654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=96.83  E-value=0.0037  Score=52.88  Aligned_cols=91  Identities=25%  Similarity=0.243  Sum_probs=59.5

Q ss_pred             hhhhhhhcCCCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      ++..+... .+++.++.|.. .+   ....+.+..++..+.+.+.|..+...  +...++++|+|.+.||+++|+++. .
T Consensus        11 ~~~~l~~~-~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~G~-~   86 (106)
T 1xwb_A           11 LDGQLTKA-SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD--ECEDIAMEYNISSMPTFVFLKNGV-K   86 (106)
T ss_dssp             HHHHHHHH-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT--TCHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred             HHHHHHhc-CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEecc--chHHHHHHcCCCcccEEEEEcCCc-E
Confidence            45555432 34566666643 22   11245566677777666677776543  346799999999999999998653 3


Q ss_pred             eeeecCCCChHHHHHHHHhh
Q 006171          344 PVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       344 p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ...+.| .+.+.|.+++++.
T Consensus        87 ~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           87 VEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEEES-CCHHHHHHHHHHT
T ss_pred             EEEEcC-CCHHHHHHHHHHh
Confidence            334678 6888899998763

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.82  E-value=0.0024  Score=53.51  Aligned_cols=89  Identities=19%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             hhhhhhhcCCCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +++.+.   .+++.+++|.. .|   ....+.+..++..+.+ +.|+.+....  ...++++|++.+.|++++|+++. .
T Consensus         9 ~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~g~-~   81 (104)
T 2e0q_A            9 FDSFLA---SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMSLPTVIFFKDGE-P   81 (104)
T ss_dssp             HHHHHH---HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSCEEEEEETTE-E
T ss_pred             HHHHHh---cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCC--CHHHHHhCCccccCEEEEEECCe-E
Confidence            455553   23466666643 22   1124555667777765 7777775432  46799999999999999997543 3


Q ss_pred             eeeecCCCChHHHHHHHHhh
Q 006171          344 PVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       344 p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ...+.|..+.+.|.+|++..
T Consensus        82 ~~~~~g~~~~~~l~~~l~~~  101 (104)
T 2e0q_A           82 VDEIIGAVPREEIEIRIKNL  101 (104)
T ss_dssp             EEEEESCCCHHHHHHHHHHH
T ss_pred             hhhccCCCCHHHHHHHHHHH
Confidence            33478988989999998764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.82  E-value=0.0017  Score=56.62  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=57.5

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+++|.. .|   ....+.+..++..+.+.+.|+.+....  ...++++|+|.+.||+++|+++. ....+.|..+.
T Consensus        30 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~G~~~~  106 (121)
T 2i1u_A           30 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT--NPETARNFQVVSIPTLILFKDGQ-PVKRIVGAKGK  106 (121)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEETTE-EEEEEESCCCH
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCcCCEEEEEECCE-EEEEecCCCCH
Confidence            4565666543 22   223456666777776667777776432  47799999999999999998542 33347898888


Q ss_pred             HHHHHHHHh
Q 006171          354 SRLSEVMEQ  362 (658)
Q Consensus       354 ~~L~~fi~~  362 (658)
                      +.|.+|++.
T Consensus       107 ~~l~~~l~~  115 (121)
T 2i1u_A          107 AALLRELSD  115 (121)
T ss_dssp             HHHHHHTCS
T ss_pred             HHHHHHHHH
Confidence            899999875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.80  E-value=0.0027  Score=54.03  Aligned_cols=82  Identities=17%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.++.|.. .|   ....+.+..++..+.+.+.|+.+...  ....++++|+|.+.||+++|+++. ....+.|..+.
T Consensus        19 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~   95 (107)
T 1dby_A           19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD--ESPNVASEYGIRSIPTIMVFKGGK-KCETIIGAVPK   95 (107)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHHTCCSSCEEEEESSSS-EEEEEESCCCH
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCCcCCEEEEEeCCE-EEEEEeCCCCH
Confidence            4566665543 22   12245566677777766777777543  246799999999999999997543 33347888888


Q ss_pred             HHHHHHHHh
Q 006171          354 SRLSEVMEQ  362 (658)
Q Consensus       354 ~~L~~fi~~  362 (658)
                      +.|.+++++
T Consensus        96 ~~l~~~l~~  104 (107)
T 1dby_A           96 ATIVQTVEK  104 (107)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            899999876

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=96.80  E-value=0.0013  Score=61.14  Aligned_cols=56  Identities=9%  Similarity=0.090  Sum_probs=36.3

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.|| +.||+.|..-.|.+.++.++++... .+..|+.+......+.+++++
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~   86 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNK   86 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcC
Confidence            4678999999 9999999999999998888887654 677777774433344555544

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=96.76  E-value=0.00028  Score=62.21  Aligned_cols=59  Identities=7%  Similarity=0.095  Sum_probs=41.7

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch----hhhHHHhhCCCCcccceeeeeEEEE
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~----~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ..++.|++|||++|+++.+.+++.+...   ..+..||+++++    ....|++.++      +.++|++++
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~---~~~~~vdi~~~~~~~~~~~~l~~~~g------~~~vP~v~i   81 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GKTVPRIFF   81 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCT---TSEEEEEGGGSSSHHHHHHHHHHHHS------CCSSCEEEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCc---CceEEEEccCCCChHHHHHHHHHHhC------CCCcCEEEE
Confidence            3578899999999998888776543110   128889988552    2235788888      889999844

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.76  E-value=0.0014  Score=55.58  Aligned_cols=82  Identities=12%  Similarity=0.095  Sum_probs=56.5

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+++|.. .|   ....+.+..++..+.+.+.|..+...+  ...++++|+|.+.||+++|+++. ....+.|..+.
T Consensus        17 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~   93 (105)
T 1nsw_A           17 DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILFKGGR-PVKQLIGYQPK   93 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEETTE-EEEEEESCCCH
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC--CHHHHHHcCCccccEEEEEeCCe-EEEEEecCCCH
Confidence            3455665543 22   123455666777776667777775432  46799999999999999996542 33347888888


Q ss_pred             HHHHHHHHh
Q 006171          354 SRLSEVMEQ  362 (658)
Q Consensus       354 ~~L~~fi~~  362 (658)
                      +.|.++++.
T Consensus        94 ~~l~~~l~~  102 (105)
T 1nsw_A           94 EQLEAQLAD  102 (105)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHH
Confidence            889998865

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.76  E-value=0.0018  Score=60.07  Aligned_cols=83  Identities=10%  Similarity=0.050  Sum_probs=59.7

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|. +.+   ....+.+..++..|.+.+.|+.|...+  ...++++|+|.+.||+++|+++. ....+.|..+.
T Consensus        64 ~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~G~-~~~~~~G~~~~  140 (155)
T 2ppt_A           64 DLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA--HPAVAGRHRIQGIPAFILFHKGR-ELARAAGARPA  140 (155)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--STHHHHHTTCCSSSEEEEEETTE-EEEEEESCCCH
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCc--cHHHHHHcCCCcCCEEEEEeCCe-EEEEecCCCCH
Confidence            445566554 322   223566777888887778888886433  46799999999999999997543 33347898899


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+|+++.
T Consensus       141 ~~l~~~l~~~  150 (155)
T 2ppt_A          141 SELVGFVRGK  150 (155)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.75  E-value=0.002  Score=55.41  Aligned_cols=83  Identities=13%  Similarity=0.081  Sum_probs=57.6

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.++.|.. .|   ....+.+..++..|.+.+.|..+....  ...++++|+|.+.||+++|+++. ....+.|..+.
T Consensus        23 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~   99 (112)
T 1t00_A           23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMSIPTLNVYQGGE-VAKTIVGAKPK   99 (112)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEETTE-EEEEEESCCCH
T ss_pred             CCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCcccEEEEEeCCE-EEEEEeCCCCH
Confidence            4565665543 22   123455666777776667777775432  47899999999999999997653 22347898888


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.++++..
T Consensus       100 ~~l~~~l~~~  109 (112)
T 1t00_A          100 AAIVRDLEDF  109 (112)
T ss_dssp             HHHHHHTHHH
T ss_pred             HHHHHHHHHH
Confidence            8999988763

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=96.75  E-value=0.0025  Score=56.24  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+|.|. +.|   ....+.+..++..|.+.+.|..+.........++++|+|...||+++|..++.....+.|..+
T Consensus        25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~  104 (126)
T 2l57_A           25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMR  104 (126)
T ss_dssp             SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCCC
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCCC
Confidence            3456566554 322   123455566777776667777775212224679999999999999999855544445789889


Q ss_pred             hHHHHHHHHhhccC
Q 006171          353 NSRLSEVMEQNKLQ  366 (658)
Q Consensus       353 ~~~L~~fi~~~~~~  366 (658)
                      .+.|.++++...-+
T Consensus       105 ~~~l~~~l~~~~~~  118 (126)
T 2l57_A          105 KNNIETILNSLGVK  118 (126)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999875433

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.73  E-value=0.00063  Score=61.54  Aligned_cols=62  Identities=15%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             CCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc---hh-hhHHHhhCCCCcccceeeeeEEE
Q 006171          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RL-ATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~---~~-~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      |+..+..+.  ++.|+++||++|+++.+.++++.      +.+..||++.+   +. ...|++.++      +.++|+|+
T Consensus        20 ~~~~i~~~~--vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g------~~~vP~l~   85 (130)
T 2cq9_A           20 IQETISDNC--VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTG------ERTVPRIF   85 (130)
T ss_dssp             HHHHHHHSS--EEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHS------SCCSSEEE
T ss_pred             HHHHHcCCc--EEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhC------CCCcCEEE
Confidence            344443443  34499999999999999887753      35667777743   21 123777788      88999984

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.72  E-value=0.0028  Score=55.79  Aligned_cols=95  Identities=23%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCCC---CCcHHHHHHHHhhccC-ceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTGE---RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~~---~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      +++.+.+++.+.   .+++.+++|. +.|.   ...+.+..++..+.+. +.|..+...  ....++++|+|...||+++
T Consensus        20 i~~~~~f~~~l~---~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d--~~~~~~~~~~v~~~Pt~~~   94 (121)
T 2j23_A           20 ISSYDQFKQVTG---GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD--EQSQIAQEVGIRAMPTFVF   94 (121)
T ss_dssp             CCSHHHHHHHHS---SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETT--TCHHHHHHHTCCSSSEEEE
T ss_pred             cCCHHHHHHHHc---CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECc--CCHHHHHHcCCCcccEEEE
Confidence            555333555552   3455566553 3221   1245555566666544 667776533  2467999999999999999


Q ss_pred             EeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       337 fk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      |+++. ....+.|. +.+.|.+|++..
T Consensus        95 ~~~G~-~~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           95 FKNGQ-KIDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             EETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             EECCe-EEeeEcCC-CHHHHHHHHHHh
Confidence            97543 33346787 888999998763

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=96.72  E-value=0.0019  Score=61.82  Aligned_cols=98  Identities=9%  Similarity=-0.040  Sum_probs=65.2

Q ss_pred             CCCcEEEEEec-cCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC----CC------------Ccccc
Q 006171          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK----PI------------GQIFF  213 (658)
Q Consensus       152 ~~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~----~i------------~k~f~  213 (658)
                      .+++++|.||+ .||+.|..-.|.+.++.++++.. +.|..|+++........++++    ++            .+.|.
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            36789999995 99999999999999999998754 477777776433333445444    22            12344


Q ss_pred             ee------eeeEEEEcCCCCCCCCCcccccCC----CCHhHHHHHHHHh
Q 006171          214 RR------GLPSLVAFPPGCKSSDCMTRFEGE----LSVDAVTDWFATA  252 (658)
Q Consensus       214 V~------~yPTl~~f~~g~~~~~~~~~Y~G~----rs~~~Lv~fv~k~  252 (658)
                      +.      ..|+.+++-+.+.   ....+.|.    ++.+.|.+.+.+.
T Consensus       109 v~~~~~g~~~p~~~lID~~G~---i~~~~~~~~~~~~~~~~l~~~l~~l  154 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGI---IQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCe---EEEEEecCCCCCCCHHHHHHHHHHH
Confidence            65      3699888864433   12334443    3678888877654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=96.71  E-value=0.0061  Score=59.58  Aligned_cols=42  Identities=10%  Similarity=-0.175  Sum_probs=35.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~  194 (658)
                      .++++||.|+|.||+.| .-.|.+.++.+++++.. .|..|+|+
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            46799999999999999 56899999999997664 78888875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.69  E-value=0.004  Score=53.12  Aligned_cols=96  Identities=19%  Similarity=0.225  Sum_probs=60.1

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.+++.+... .+++.++.|. +.|   ....|.+..++..| ..+.|..+....  ...++++|+|.+.||+++|
T Consensus         6 i~~~~~~~~~~~~~-~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            6 VGSDPDFQPELSGA-GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQ--CQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             ECSGGGHHHHHHHT-TTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEEEE
T ss_pred             ecCHHHHHHHHHhC-CCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECcc--CHHHHHhcCCCcccEEEEE
Confidence            33333356666432 3455566554 322   22345666677777 457777776433  4779999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|. +...|.+|++..
T Consensus        82 ~~G~-~~~~~~G~-~~~~l~~~l~~~  105 (107)
T 1gh2_A           82 RNKV-RIDQYQGA-DAVGLEEKIKQH  105 (107)
T ss_dssp             ETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             ECCe-EEEEEeCC-CHHHHHHHHHHh
Confidence            8653 22346774 455699988763

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.69  E-value=0.0029  Score=54.65  Aligned_cols=82  Identities=20%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+|.|. +.|   ....+.+..++..|. .+.|..+...  ....++++|+|.+.||+++|+++ .....+.|. +
T Consensus        23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-~~~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~-~   97 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVD--ELGDVAQKNEVSAMPTLLLFKNG-KEVAKVVGA-N   97 (109)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TCHHHHHHTTCCSSSEEEEEETT-EEEEEEESS-C
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECC--CCHHHHHHcCCCccCEEEEEECC-EEEEEEeCC-C
Confidence            3556666664 322   223456666777764 3667776543  34789999999999999999854 333346777 6


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.++|+++
T Consensus        98 ~~~l~~~i~~~  108 (109)
T 3f3q_A           98 PAAIKQAIAAN  108 (109)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            78899998764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.65  E-value=0.0025  Score=54.67  Aligned_cols=92  Identities=20%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             hhhhhhhcC-CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAKTG-PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~~-~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      +++.+.... .+++.++.|. +.|   ....+.+..++..|.+.+.|..+...  ....++++|+|.+.||+++|+++. 
T Consensus        13 ~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~G~-   89 (112)
T 1ep7_A           13 WDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD--AVAAVAEAAGITAMPTFHVYKDGV-   89 (112)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TTHHHHHHHTCCBSSEEEEEETTE-
T ss_pred             HHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECC--chHHHHHHcCCCcccEEEEEECCe-
Confidence            555554311 1345566554 322   12345666677777666777777543  246899999999999999997653 


Q ss_pred             CeeeecCCCChHHHHHHHHhh
Q 006171          343 KPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ....+.|. +.+.|.++++..
T Consensus        90 ~~~~~~G~-~~~~l~~~l~~~  109 (112)
T 1ep7_A           90 KADDLVGA-SQDKLKALVAKH  109 (112)
T ss_dssp             EEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEcCC-CHHHHHHHHHHH
Confidence            22346787 888999998764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=96.65  E-value=0.002  Score=60.22  Aligned_cols=93  Identities=9%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             hhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +++.+.. ..++++|+-|. +   .|....|.+..+|.+|.+.+.|+.|.+.+  .++++.+|+|.+.||+++|+++...
T Consensus        32 f~~~v~~-~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           32 VDQAIVN-EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             HHHHHHH-CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEEEEEEETTEEE
T ss_pred             HHHHHHh-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCEEE
Confidence            4444432 23456666553 2   12234688888999998778888887543  5789999999999999999987432


Q ss_pred             ee--------eecCCCC-hHHHHHHHHhh
Q 006171          344 PV--------VYYGSFN-NSRLSEVMEQN  363 (658)
Q Consensus       344 p~--------~y~g~~~-~~~L~~fi~~~  363 (658)
                      .+        ...|..+ .+.|.++|+.+
T Consensus       109 ~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~  137 (160)
T 2av4_A          109 MIDLGTGNNNKINWPMNNKQEFIDIVETI  137 (160)
T ss_dssp             EEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred             EEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence            11        2457666 88899998764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.0077  Score=51.70  Aligned_cols=98  Identities=14%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhh-ccCceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNY-WAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~-~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      +++.+.+++.+.....+++.++.|. +.|   ....+.+..++..+ ...+.|..+...  +...++++|+|.+.||+++
T Consensus         5 i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~   82 (112)
T 3d6i_A            5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD--ENSEISELFEISAVPYFII   82 (112)
T ss_dssp             ECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETT--TCHHHHHHTTCCSSSEEEE
T ss_pred             cCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecc--cCHHHHHHcCCCcccEEEE
Confidence            4442225555543123456666553 322   22345566677764 234677777543  2478999999999999999


Q ss_pred             EeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       337 fk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      |+++. ....+.|. ....|.++++..
T Consensus        83 ~~~G~-~~~~~~G~-~~~~l~~~l~~~  107 (112)
T 3d6i_A           83 IHKGT-ILKELSGA-DPKEYVSLLEDC  107 (112)
T ss_dssp             EETTE-EEEEECSC-CHHHHHHHHHHH
T ss_pred             EECCE-EEEEecCC-CHHHHHHHHHHH
Confidence            97543 22336776 455688888763

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.61  E-value=0.002  Score=58.07  Aligned_cols=95  Identities=11%  Similarity=0.085  Sum_probs=60.8

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCC------C
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVE------S  330 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~------~  330 (658)
                      ++.++ ++..+... ..++.+|.|. +   .|....|.+..++..|.+ .+.|+.|...  +...++++|+|.      .
T Consensus        12 l~~~~-f~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~~~~~~   87 (137)
T 2dj0_A           12 FNDKT-IDEELERD-KRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG--RYTDVSTRYKVSTSPLTKQ   87 (137)
T ss_dssp             CCTTH-HHHHHHHS-TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTT--TCHHHHHHTTCCCCSSSSC
T ss_pred             ccHhh-HHHHHhcC-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCc--cCHHHHHHccCcccCCcCC
Confidence            45544 55555433 3445556553 2   345567888888888864 5666666432  347899999999      9


Q ss_pred             CCEEEEEeCCCCCeeeecCCCChHHHHHHHH
Q 006171          331 APAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       331 ~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~  361 (658)
                      .||+++|+++. ....+.|..+.+.|.+|+.
T Consensus        88 ~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           88 LPTLILFQGGK-EAMRRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             SSEEEEESSSS-EEEEESCBCSSSCBCCCCC
T ss_pred             CCEEEEEECCE-EEEEecCcCchHHHHHHHh
Confidence            99999997653 3334677766555555543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.60  E-value=0.0023  Score=54.01  Aligned_cols=82  Identities=15%  Similarity=0.241  Sum_probs=56.7

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+++|.. .|   ....+.+..++..+.+.+.|..+...  +...++++|+|.+.||+++++++. ....+.|..+.
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~   94 (105)
T 1fb6_A           18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD--EAPGIATQYNIRSIPTVLFFKNGE-RKESIIGAVPK   94 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCSSSEEEEEETTE-EEEEEEECCCH
T ss_pred             CCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCc--chHHHHHhCCCCcccEEEEEeCCe-EEEEEecCCCH
Confidence            4566665543 22   12345566677777666777777543  246799999999999999997543 23346888888


Q ss_pred             HHHHHHHHh
Q 006171          354 SRLSEVMEQ  362 (658)
Q Consensus       354 ~~L~~fi~~  362 (658)
                      +.|.+++++
T Consensus        95 ~~l~~~l~~  103 (105)
T 1fb6_A           95 STLTDSIEK  103 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            899999875

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.60  E-value=0.0035  Score=54.71  Aligned_cols=93  Identities=19%  Similarity=0.139  Sum_probs=61.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC-C---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK-T---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.++..++.   +++.++.|.. .   |....+.+..++..|.+ +.|..+...  +...++++|+|...||+++|
T Consensus        17 ~~~~~~~~~~~~~---~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~   90 (114)
T 2oe3_A           17 LTNLTEFRNLIKQ---NDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVD--ESPDIAKECEVTAMPTFVLG   90 (114)
T ss_dssp             CCSHHHHHHHHHH---CSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETT--TCHHHHHHTTCCSBSEEEEE
T ss_pred             cCCHHHHHHHHhC---CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC--CCHHHHHHCCCCcccEEEEE
Confidence            4554445555542   3466666643 2   22245666777777755 777777543  24679999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      +++. ....+.|.. .+.|.+++++
T Consensus        91 ~~G~-~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           91 KDGQ-LIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             ETTE-EEEEEESSC-HHHHHHHHHT
T ss_pred             eCCe-EEEEEeCCC-HHHHHHHHHh
Confidence            7653 223467877 8889998874

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.59  E-value=0.0099  Score=49.93  Aligned_cols=90  Identities=19%  Similarity=0.261  Sum_probs=57.8

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +++.+... .+++.+++|. +.+   ....+.+..++..+. .+.|..+....  ...++++|+|.+.||+++|+++. .
T Consensus        10 ~~~~l~~~-~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~g~-~   84 (104)
T 2vim_A           10 LEKLINEN-KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ--NEEAAAKYSVTAMPTFVFIKDGK-E   84 (104)
T ss_dssp             HHHHHHTT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred             HHHHHHhc-CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccC--CHHHHHHcCCccccEEEEEeCCc-E
Confidence            45555432 3456566554 322   112355555666664 56777775432  46799999999999999998543 2


Q ss_pred             eeeecCCCChHHHHHHHHhh
Q 006171          344 PVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       344 p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ...+.| .+.+.|.+|+++.
T Consensus        85 ~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           85 VDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EEEEES-SCHHHHHHHHHHH
T ss_pred             EEEEeC-CCHHHHHHHHHhh
Confidence            234677 5888899998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.57  E-value=0.0029  Score=55.34  Aligned_cols=95  Identities=19%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             ccchhhhhhhhhc-CCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          263 TKESMGKNFLAKT-GPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       263 t~~~~~~~Fl~~~-~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +.++ ++..+... ..+++.++.|. +.|   ....+.+..++..|.+ +.|..+...+  ...++++|+|.+.||+++|
T Consensus        19 ~~~~-~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   94 (122)
T 2vlu_A           19 SLEQ-WTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDE--LKPIAEQFSVEAMPTFLFM   94 (122)
T ss_dssp             SHHH-HHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             CHHH-HHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCC--CHHHHHHcCCCcccEEEEE
Confidence            4334 45544431 13455566554 322   1224556667777765 6777775432  4779999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|.. .+.|.+|++..
T Consensus        95 ~~G~-~~~~~~G~~-~~~l~~~l~~~  118 (122)
T 2vlu_A           95 KEGD-VKDRVVGAI-KEELTAKVGLH  118 (122)
T ss_dssp             ETTE-EEEEEESSC-HHHHHHHHHHH
T ss_pred             eCCE-EEEEEeCcC-HHHHHHHHHHH
Confidence            7653 233477887 88899998864

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.55  E-value=0.0047  Score=53.36  Aligned_cols=82  Identities=15%  Similarity=0.211  Sum_probs=56.0

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.++.|. +.|   ....+.+..++..+. .+.|..+...  ...+++++|+|.+.||+++|+++. ....+.|..+.
T Consensus        19 ~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~G~-~v~~~~G~~~~   94 (110)
T 2l6c_A           19 LSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSE--ARPELMKELGFERVPTLVFIRDGK-VAKVFSGIMNP   94 (110)
T ss_dssp             CSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGG--GCHHHHHHTTCCSSCEEEEEESSS-EEEEEESCCCH
T ss_pred             CCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCc--CCHHHHHHcCCcccCEEEEEECCE-EEEEEcCCCCH
Confidence            456566554 322   123455566666654 5677777543  247899999999999999997653 33347898899


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+++...
T Consensus        95 ~~l~~~~~~~  104 (110)
T 2l6c_A           95 RELQALYASI  104 (110)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.51  E-value=0.0031  Score=56.06  Aligned_cols=85  Identities=19%  Similarity=0.279  Sum_probs=56.9

Q ss_pred             CcEEEEEEeCC-C---CCCcHHHHHHHHhhcc--CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC-Ceeeec-C
Q 006171          278 HKVKVIFFSKT-G---ERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYY-G  349 (658)
Q Consensus       278 ~~v~vl~f~~~-~---~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~-~p~~y~-g  349 (658)
                      +++.+|.|... |   ....|.+..++..|..  .+.|+.+...  ....++++|+|..+||+++|++++. .++.|. |
T Consensus        25 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~gg  102 (133)
T 2dj3_A           25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT--ANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGG  102 (133)
T ss_dssp             TSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTT--TSCCCCSSCCCSSSSEEEEECTTCTTSCEECCSS
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCC--cCHHHHhhcCCCcCCEEEEEeCCCcccceEecCC
Confidence            45667766432 2   2234566667777763  4555555322  2356888999999999999987654 334576 5


Q ss_pred             CCChHHHHHHHHhhc
Q 006171          350 SFNNSRLSEVMEQNK  364 (658)
Q Consensus       350 ~~~~~~L~~fi~~~~  364 (658)
                      ..+.+.|.+|++.+.
T Consensus       103 ~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A          103 NRDLEHLSKFIDEHA  117 (133)
T ss_dssp             CCSTTHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHhc
Confidence            588899999998864

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=96.49  E-value=0.0017  Score=61.64  Aligned_cols=54  Identities=9%  Similarity=0.095  Sum_probs=40.8

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhC
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERK  206 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~  206 (658)
                      +++++|.|| +.||+.|..-.|.+.++.++++... .|..|.++........++++
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~  106 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQ  106 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence            567888887 9999999999999999999998654 77778877433333344443

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.48  E-value=0.00098  Score=61.70  Aligned_cols=53  Identities=15%  Similarity=0.236  Sum_probs=38.7

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc---hh-hhHHHhhCCCCcccceeeeeEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RL-ATHLAERKPIGQIFFRRGLPSLV  221 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~---~~-~~~Lc~k~~i~k~f~V~~yPTl~  221 (658)
                      ++.|++|||++|+++.+.++++.      +.+..||++.+   +. ...|++.++      +.++|+|.
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g------~~tvP~if  107 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTG------ERTVPRIF  107 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHS------CCCSCEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhC------CCCcCeEE
Confidence            34499999999999999887753      35667777743   21 124778888      88999984

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.48  E-value=0.0062  Score=52.55  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=59.9

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++..+ +++.++   .+++.+++|.. .|   ....+.+..++..+. .+.|..+....  ...++++|+|...||+++|
T Consensus        14 ~~~~~-f~~~~~---~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   86 (112)
T 1syr_A           14 TSQAE-FDSIIS---QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDE--VSEVTEKENITSMPTFKVY   86 (112)
T ss_dssp             CSHHH-HHHHHH---HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--THHHHHHTTCCSSSEEEEE
T ss_pred             CCHHH-HHHHHc---cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCC--CHHHHHHcCCCcccEEEEE
Confidence            34444 555654   34566666643 22   123455566676664 46677765432  4679999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      +++. ....+.|. +.+.|.++++.
T Consensus        87 ~~G~-~~~~~~G~-~~~~l~~~l~~  109 (112)
T 1syr_A           87 KNGS-SVDTLLGA-NDSALKQLIEK  109 (112)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHT
T ss_pred             ECCc-EEEEEeCC-CHHHHHHHHHH
Confidence            8643 33346788 88999999876

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.45  E-value=0.0051  Score=54.80  Aligned_cols=94  Identities=14%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.+++.+.   .+++.+|.|. +.   |....+.+..++..|. .+.|+.+...  +...++++|+|...||+++|
T Consensus        24 l~~~~~f~~~~~---~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d--~~~~l~~~~~v~~~Pt~~i~   97 (125)
T 1r26_A           24 VYSVEQFRNIMS---EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDAD--NNSEIVSKCRVLQLPTFIIA   97 (125)
T ss_dssp             ECCHHHHHHHHH---SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             CCCHHHHHHHHc---cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECC--CCHHHHHHcCCCcccEEEEE
Confidence            555232555553   3345566553 32   2234566777777773 5777777643  24779999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.| .+.+.|.++++..
T Consensus        98 ~~G~-~~~~~~G-~~~~~l~~~l~~~  121 (125)
T 1r26_A           98 RSGK-MLGHVIG-ANPGMLRQKLRDI  121 (125)
T ss_dssp             ETTE-EEEEEES-SCHHHHHHHHHHH
T ss_pred             eCCe-EEEEEeC-CCHHHHHHHHHHH
Confidence            7653 2234678 5888899988763

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.45  E-value=0.0027  Score=59.75  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=30.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHh--hcccc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIAN  187 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l--~g~~~  187 (658)
                      +.++.++.|+.+||+||+++.|...++.+++  .+.++
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~   63 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVE   63 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEE
Confidence            4567899999999999999999999988887  55443

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=96.42  E-value=0.0023  Score=59.76  Aligned_cols=55  Identities=13%  Similarity=0.069  Sum_probs=41.2

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.|| +.||++|..-.|.+.++.+++ ..+.|..|+++........+++++
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~   97 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEG   97 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcC
Confidence            3578999998 899999999999999999988 445778888874333333445554

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=96.42  E-value=0.0049  Score=53.69  Aligned_cols=81  Identities=21%  Similarity=0.177  Sum_probs=56.6

Q ss_pred             CcEEEEEE-eCCC---CCCcHHHHHHHHhhcc-----CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC-eeee
Q 006171          278 HKVKVIFF-SKTG---ERASPFVRQISRNYWA-----YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK-PVVY  347 (658)
Q Consensus       278 ~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~-----~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~-p~~y  347 (658)
                      +++.+|.| .+.|   ....|.+..++..|.+     .+.|+.+.....   .+++  +|.++||+++|++++.. ...|
T Consensus        25 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~--~v~~~Pt~~~~~~~~~~~~~~~   99 (121)
T 2djj_A           25 TKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN---DVPD--EIQGFPTIKLYPAGAKGQPVTY   99 (121)
T ss_dssp             TSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS---CCSS--CCSSSSEEEEECSSCTTSCCCC
T ss_pred             CCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc---cccc--ccCcCCeEEEEeCcCCCCceEe
Confidence            45555655 3322   2235667778888875     677777764332   3555  99999999999887542 5568


Q ss_pred             cCCCChHHHHHHHHhh
Q 006171          348 YGSFNNSRLSEVMEQN  363 (658)
Q Consensus       348 ~g~~~~~~L~~fi~~~  363 (658)
                      .|..+.+.|.+|++++
T Consensus       100 ~G~~~~~~l~~~i~~~  115 (121)
T 2djj_A          100 SGSRTVEDLIKFIAEN  115 (121)
T ss_dssp             CCCSCHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHhc
Confidence            9999999999999875

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=96.36  E-value=0.0046  Score=61.91  Aligned_cols=98  Identities=13%  Similarity=0.029  Sum_probs=64.9

Q ss_pred             CCCcEEEEEec-cCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhC-------C------------CCc
Q 006171          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERK-------P------------IGQ  210 (658)
Q Consensus       152 ~~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~-------~------------i~k  210 (658)
                      .+++++|.||+ .||+.|..-.|.+.++.++++... .|..|+++........++++       +            +.+
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            35789999999 999999999999999999997653 77788887433323333332       1            122


Q ss_pred             cccee------eeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          211 IFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~------~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      .|.+.      .+|+.+++-+.+.   ....+.|    .++.+.+++.+...
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~---I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGV---LRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCe---EEEEEecCCCCCCCHHHHHHHHHHh
Confidence            44476      6899888854433   1122222    45678888777553

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=96.34  E-value=0.0031  Score=58.80  Aligned_cols=56  Identities=13%  Similarity=0.077  Sum_probs=44.9

Q ss_pred             CCCcEEEEEe-ccCCCCCC-CChHHHHHHHHHhhcc-cc-eeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCG-QFSGAWKTIAALLEGI-AN-TGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck-~l~P~w~~~A~~l~g~-~~-vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.|| +.||+.|. .-.|.+.++.++++.. +. |..|+.+........+++++
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~   93 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYP   93 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcC
Confidence            3578899999 89999999 8999999999999754 36 88888875444556777777

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=96.34  E-value=0.011  Score=47.75  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=54.9

Q ss_pred             EEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHH
Q 006171          280 VKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (658)
Q Consensus       280 v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~  355 (658)
                      +.+++|..    .+....+.+..++..|.+.+.|..+...+  ..+++++|+|.+.||+++  ++  +. .+.|..+.+.
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~--~G--~~-~~~G~~~~~~   76 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME--NPQKAMEYGIMAVPTIVI--NG--DV-EFIGAPTKEA   76 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS--SCCTTTSTTTCCSSEEEE--TT--EE-ECCSSSSSHH
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHCCCcccCEEEE--CC--EE-eeecCCCHHH
Confidence            45555532    23345677777888887667777776543  457899999999999988  33  22 5788888899


Q ss_pred             HHHHHHhh
Q 006171          356 LSEVMEQN  363 (658)
Q Consensus       356 L~~fi~~~  363 (658)
                      |.+++++.
T Consensus        77 l~~~l~~~   84 (85)
T 1fo5_A           77 LVEAIKKR   84 (85)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998763

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.33  E-value=0.0078  Score=54.21  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      .+.+..++..|.+.+.|+.+....  ...++++|+|.++||+++|+++. ....+.|..+.+.|.+|++..
T Consensus        69 ~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~  136 (140)
T 1v98_A           69 SPILEELARDHAGRLKVVKVNVDE--HPGLAARYGVRSVPTLVLFRRGA-PVATWVGASPRRVLEERLRPY  136 (140)
T ss_dssp             HHHHHHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEEETTE-EEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCceEEEEEECCC--CHHHHHHCCCCccCEEEEEeCCc-EEEEEeCCCCHHHHHHHHHHH
Confidence            466666777776667777776433  46899999999999999997653 233478988889999999764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.33  E-value=0.0054  Score=60.26  Aligned_cols=84  Identities=13%  Similarity=0.222  Sum_probs=60.7

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|. +-|   ....|.+..++..|.+.+.|+.|....  ...++++|+|.++||+++|+++. ....+.|..+.
T Consensus        30 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~  106 (222)
T 3dxb_A           30 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSK  106 (222)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CTTTGGGGTCCSBSEEEEEETTE-EEEEEESCCCH
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCe-EEEEeccccCh
Confidence            456566553 322   223566777888887777777776433  46799999999999999998643 33357899999


Q ss_pred             HHHHHHHHhhc
Q 006171          354 SRLSEVMEQNK  364 (658)
Q Consensus       354 ~~L~~fi~~~~  364 (658)
                      +.|.+|++...
T Consensus       107 ~~l~~~l~~~l  117 (222)
T 3dxb_A          107 GQLKEFLDANL  117 (222)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhhc
Confidence            99999998743

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=96.32  E-value=0.0062  Score=61.56  Aligned_cols=97  Identities=13%  Similarity=0.030  Sum_probs=63.2

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhC-------CC------------Cc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERK-------PI------------GQ  210 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~-------~i------------~k  210 (658)
                      .+++++|.|| +.||+.|..-.|.+.++.++++... .|..|+++........++++       ++            .+
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            3578899998 9999999999999999999997653 77788887433323333322       11            12


Q ss_pred             cccee------eeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHH
Q 006171          211 IFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFAT  251 (658)
Q Consensus       211 ~f~V~------~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k  251 (658)
                      .|.|.      .+|+.+++-+.+.   ....+.|    .++.+.+++.+..
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~---I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGI---LRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSB---EEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCe---EEEEEecCCCCCCCHHHHHHHHHh
Confidence            34464      5798888865443   1122223    4567777777654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.30  E-value=0.0008  Score=59.80  Aligned_cols=59  Identities=14%  Similarity=0.290  Sum_probs=41.6

Q ss_pred             EEEEeccCCCCCCCC-hHHHHHHHHHhhcccceeeeecccch----hhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQF-SGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l-~P~w~~~A~~l~g~~~vg~Vdc~e~~----~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.|++|||++|+++ .+.+++...   ..+.+..||.++++    ....|++.++      +.++|+|  |.+|
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g------~~tvP~v--fi~g   90 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEING------QRTVPNI--YING   90 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHS------CCSSCEE--EETT
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhC------CCCcCEE--EECC
Confidence            566999999999988 776655431   22577888888543    2234777888      7899997  4455

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=96.29  E-value=0.0088  Score=56.13  Aligned_cols=97  Identities=9%  Similarity=-0.059  Sum_probs=64.4

Q ss_pred             CCcEEEEEeccCCCC-CCCChHHHHHHHHHhhc---ccceeeeeccc----------------------------chhhh
Q 006171          153 SKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG---IANTGMVELGD----------------------------IRLAT  200 (658)
Q Consensus       153 ~~~~lV~FYapwC~~-Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e----------------------------~~~~~  200 (658)
                      +++++|.||+.||+. |....|.+.++.++++.   .+.+..|.++.                            .....
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            689999999999985 99999999999999853   24566666541                            01223


Q ss_pred             HHHhhCCCCc---ccceeeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHHHHh
Q 006171          201 HLAERKPIGQ---IFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA  252 (658)
Q Consensus       201 ~Lc~k~~i~k---~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv~k~  252 (658)
                      .+++.+|+.-   .+.+...|+++++-+.+.   ....|.|. .+.++|...+.+.
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~---i~~~~~g~~~~~~~i~~~l~~~  160 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQ---IKDYIYGVNYNYLEFVNALRLA  160 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSB---EEEEEESSSCCHHHHHHHHHHH
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCe---EEEEEeCCCCCHHHHHHHHHHh
Confidence            4566555321   123556788888754443   22345664 6788898888776

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.29  E-value=0.0064  Score=52.81  Aligned_cols=95  Identities=15%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.++..+... .+++.++.|. +.|   ....+.+..++..|  .+.|+.+...  +...++++|+|.+.||+++|
T Consensus        18 l~~~~~~~~~l~~~-~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~   92 (117)
T 2xc2_A           18 LKQDGDLESLLEQH-KNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVD--KLEETARKYNISAMPTFIAI   92 (117)
T ss_dssp             CCSTTHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETT--TSHHHHHHTTCCSSSEEEEE
T ss_pred             eCCHHHHHHHHHhC-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECC--ccHHHHHHcCCCccceEEEE
Confidence            44423355555532 3455566554 322   12245555566665  5666666532  34779999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.| .+.+.|.+++++.
T Consensus        93 ~~G~-~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           93 KNGE-KVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             ETTE-EEEEEES-SCHHHHHHHHHHH
T ss_pred             eCCc-EEEEEeC-CCHHHHHHHHHHh
Confidence            7653 2334677 5788899998763

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.28  E-value=0.0018  Score=52.59  Aligned_cols=71  Identities=11%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      ++.|+++||++|+++.+.+++.     + +.+..+|.++++ ....+.+.++      +.++|++.  .+|..       
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~-i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~l~--~~g~~-------   61 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-----G-VSFQELPIDGNAAKREEMIKRSG------RTTVPQIF--IDAQH-------   61 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----T-CCCEEEECTTCSHHHHHHHHHHS------SCCSCEEE--ETTEE-------
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----C-CCcEEEECCCCHHHHHHHHHHhC------CCCcCEEE--ECCEE-------
Confidence            6779999999999988877654     2 467778877532 2234666777      77999984  35521       


Q ss_pred             ccCCCCHhHHHHHHHH
Q 006171          236 FEGELSVDAVTDWFAT  251 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv~k  251 (658)
                      ..|   .++|.+++..
T Consensus        62 i~g---~~~i~~~~~~   74 (82)
T 1fov_A           62 IGG---YDDLYALDAR   74 (82)
T ss_dssp             EES---HHHHHHHHHT
T ss_pred             EeC---HHHHHHHHHC
Confidence            122   4667777643

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=96.23  E-value=0.013  Score=47.43  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=51.3

Q ss_pred             CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          289 GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       289 ~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +....+.+..++..|.+.+.|..+...+  ...++++|+|.+.||+++  ++  +. .+.|..+.+.|.+++++.
T Consensus        16 C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~--~G--~~-~~~G~~~~~~l~~~l~~~   83 (85)
T 1nho_A           16 CPMAIEVVDEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMAVPAIAI--NG--VV-RFVGAPSREELFEAINDE   83 (85)
T ss_dssp             STTHHHHHHHHHHHHCSSCCEEEECTTT--CGGGGGGTCSSCSSEEEE--TT--TE-EEECSSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCCeEEEEEECCC--CHHHHHhCCceeeCEEEE--CC--EE-EEccCCCHHHHHHHHHHH
Confidence            3445677777888887677888876433  467999999999999998  33  22 578888889999998764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=96.15  E-value=0.004  Score=59.40  Aligned_cols=35  Identities=11%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA  186 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~  186 (658)
                      ..++.++.|+.+||++|..+.|.+.++.+++.+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v   58 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDV   58 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTE
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCce
Confidence            35678999999999999999999999988775443

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.14  E-value=0.0085  Score=53.06  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=57.1

Q ss_pred             hhhhhhhc-CCCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAKT-GPHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~-~~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      ++..+... ..+++.++.|.. .|   ....+.+..++..|. .+.|..+...  +...++++|+|...||+++|+++. 
T Consensus        27 ~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~-  102 (124)
T 1xfl_A           27 WNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTD--ELKSVASDWAIQAMPTFMFLKEGK-  102 (124)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETT--TSHHHHHHTTCCSSSEEEEEETTE-
T ss_pred             HHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECc--cCHHHHHHcCCCccCEEEEEECCE-
Confidence            45555432 134566666643 22   123455666777664 4556665432  347899999999999999997653 


Q ss_pred             CeeeecCCCChHHHHHHHHhh
Q 006171          343 KPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ....+.| .+.+.|.+++++.
T Consensus       103 ~~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A          103 ILDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             EEEEEES-CCHHHHHHHHHHH
T ss_pred             EEEEEeC-CCHHHHHHHHHHh
Confidence            2223567 4888899998763

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=96.14  E-value=0.0099  Score=54.88  Aligned_cols=108  Identities=13%  Similarity=0.058  Sum_probs=74.7

Q ss_pred             eEEEecCCCCCccccCCCcEEEE-EeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQ-VYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~-FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      -|.++|.+|+.....+.-+..+. |..+--..-..+.+.++++|+.++|.+.++.||.++. ....+.+.+|      ++
T Consensus        15 LV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~-~~~~~l~~fG------l~   87 (147)
T 3bj5_A           15 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHT-DNQRILEFFG------LK   87 (147)
T ss_dssp             CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCG-GGHHHHHHTT------CC
T ss_pred             eeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchH-hHHHHHHHcC------CC
Confidence            47889999987776665555544 4433333344578899999999999999999998322 2234778888      55


Q ss_pred             e--eeEEEEcCC-CCCCCCCcccc-cCCCCHhHHHHHHHHhhc
Q 006171          216 G--LPSLVAFPP-GCKSSDCMTRF-EGELSVDAVTDWFATAIL  254 (658)
Q Consensus       216 ~--yPTl~~f~~-g~~~~~~~~~Y-~G~rs~~~Lv~fv~k~v~  254 (658)
                      .  .|++.++.. +..   ....+ .|..+.+.|.+|+.+.+.
T Consensus        88 ~~~~P~v~i~~~~~~~---~Ky~~~~~~~t~~~i~~Fv~d~l~  127 (147)
T 3bj5_A           88 KEECPAVRLITLEEEM---TKYKPESEELTAERITEFCHRFLE  127 (147)
T ss_dssp             GGGCSEEEEEECSSSC---EEECCSCCCCCHHHHHHHHHHHHT
T ss_pred             cccCCEEEEEeccccc---ccCCCCcccCCHHHHHHHHHHHHc
Confidence            4  999999864 221   01222 378899999999988743

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=96.10  E-value=0.0025  Score=53.32  Aligned_cols=72  Identities=6%  Similarity=0.032  Sum_probs=47.6

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-----cc-hhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-----DI-RLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-----e~-~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~  230 (658)
                      ++.|+++||++|+++.+..++..      +.+-.+|.+     ++ .....+.+.++      +.++|+|.+  +|.   
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g------~~~vP~l~~--~g~---   76 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISG------SYSVPVVVK--GDK---   76 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHS------SSCSCEEEE--TTE---
T ss_pred             EEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcC------CCCcCEEEE--CCE---
Confidence            66788999999999887776653      234445554     11 11245667777      779999987  442   


Q ss_pred             CCcccccCCCCHhHHHHHHH
Q 006171          231 DCMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       231 ~~~~~Y~G~rs~~~Lv~fv~  250 (658)
                          . -|..+.+.|.+++.
T Consensus        77 ----~-i~G~~~~~l~~~l~   91 (92)
T 3ic4_A           77 ----H-VLGYNEEKLKELIR   91 (92)
T ss_dssp             ----E-EESCCHHHHHHHHH
T ss_pred             ----E-EeCCCHHHHHHHhc
Confidence                1 34458888888764

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=96.09  E-value=0.0028  Score=59.85  Aligned_cols=61  Identities=11%  Similarity=0.084  Sum_probs=47.3

Q ss_pred             CCcEEEEEeccCCCCCCCC-hHHHHHHHHHhhcc-cc-eeeeecccchhhhHHHhhCCCCccccee-eeeE
Q 006171          153 SKPWLIQVYSDGSYLCGQF-SGAWKTIAALLEGI-AN-TGMVELGDIRLATHLAERKPIGQIFFRR-GLPS  219 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l-~P~w~~~A~~l~g~-~~-vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~-~yPT  219 (658)
                      +.++|+.|++.||+.|..- .|.+.++.++++.. +. |..|+.+........+++++      +. .||.
T Consensus        44 k~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~------~~~~fp~  108 (171)
T 2pwj_A           44 KKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQ------AKDAIEF  108 (171)
T ss_dssp             SEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTT------CTTTSEE
T ss_pred             CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhC------CCCceEE
Confidence            3577889999999999986 99999999998754 36 88888875444556778877      53 6773

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=96.06  E-value=0.0013  Score=63.40  Aligned_cols=43  Identities=7%  Similarity=-0.007  Sum_probs=36.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~  194 (658)
                      +.++.+|+|+++||+||+++.|.++++++.+.+.+.+..++..
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence            4678999999999999999999999999887665566666664

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.06  E-value=0.012  Score=54.01  Aligned_cols=97  Identities=13%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.++..+... .+++.+|.|. +.|   ....+.+..++..| ..+.|+.|....  ...++++|+|.++||+++|
T Consensus        17 l~~~~~~~~~~~~~-~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~   92 (153)
T 2wz9_A           17 VGSAGQFEELLRLK-AKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEG--VPEVSEKYEISSVPTFLFF   92 (153)
T ss_dssp             ECSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEEEE
T ss_pred             cCCHHHHHHHHHhc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-CCeEEEEEECCC--CHHHHHHcCCCCCCEEEEE
Confidence            44433356666543 2455566554 322   22345566677666 357777775432  4679999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      +++ .....+.| .+.+.|.++++...
T Consensus        93 ~~G-~~~~~~~G-~~~~~l~~~i~~~l  117 (153)
T 2wz9_A           93 KNS-QKIDRLDG-AHAPELTKKVQRHA  117 (153)
T ss_dssp             ETT-EEEEEEES-SCHHHHHHHHHHHS
T ss_pred             ECC-EEEEEEeC-CCHHHHHHHHHHHh
Confidence            943 32223566 47788999998753

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.02  E-value=0.0031  Score=54.48  Aligned_cols=65  Identities=8%  Similarity=0.055  Sum_probs=43.6

Q ss_pred             CCccccCCCcEEEEEec-----cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhh-hHHHhhCCCCcccceeeeeE
Q 006171          146 FPSIFHDSKPWLIQVYS-----DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       146 F~~~v~~~~~~lV~FYa-----pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~-~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      +++.+..+.  ++.|++     |||++|+++.+.+++..      +.+..+|.++++.. ..+.+.++      +.++|+
T Consensus        10 ~~~~i~~~~--vvvf~~g~~~~~~C~~C~~~~~~L~~~~------i~~~~vdi~~~~~~~~~l~~~~g------~~~vP~   75 (105)
T 2yan_A           10 LKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNSTG------VEYETFDILEDEEVRQGLKAYSN------WPTYPQ   75 (105)
T ss_dssp             HHHHHTSSS--EEEEESBCSSSBCTTHHHHHHHHHHHHT------CCCEEEEGGGCHHHHHHHHHHHT------CCSSCE
T ss_pred             HHHHhccCC--EEEEEecCCCCCCCccHHHHHHHHHHCC------CCeEEEECCCCHHHHHHHHHHHC------CCCCCe
Confidence            334444443  344777     99999999888877653      47888898855432 23566667      779999


Q ss_pred             EEEcCCC
Q 006171          220 LVAFPPG  226 (658)
Q Consensus       220 l~~f~~g  226 (658)
                      |.  .+|
T Consensus        76 v~--i~g   80 (105)
T 2yan_A           76 LY--VKG   80 (105)
T ss_dssp             EE--ETT
T ss_pred             EE--ECC
Confidence            84  455

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=95.97  E-value=0.0023  Score=59.93  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=47.8

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      .+++++|.|| +.||+.|....|.+.++.+++ ..+.|..|+++........+++++      +..||.+
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~------~~~~~~l  108 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFN------IQNVTVA  108 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTT------CCSSEEE
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcC------CCCeEEe
Confidence            3578999998 899999999999999998888 445788888875444555777777      5456644

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=95.96  E-value=0.009  Score=51.10  Aligned_cols=91  Identities=21%  Similarity=0.304  Sum_probs=56.9

Q ss_pred             hhhhhhhc-CCCcEEEEEEeCC-C---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAKT-GPHKVKVIFFSKT-G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~-~~~~v~vl~f~~~-~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      +++.+... ..+++.+++|... |   ....+.+..++..|. .+.|..+...  ....++++|+|...|++++|+++. 
T Consensus        15 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~G~-   90 (113)
T 1ti3_A           15 WKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVD--ELKAVAEEWNVEAMPTFIFLKDGK-   90 (113)
T ss_dssp             HHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETT--TCHHHHHHHHCSSTTEEEEEETTE-
T ss_pred             HHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEcc--ccHHHHHhCCCCcccEEEEEeCCE-
Confidence            55555542 2356667766432 2   112345555666664 4556665432  347899999999999999997543 


Q ss_pred             CeeeecCCCChHHHHHHHHhh
Q 006171          343 KPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ....+.| .+.+.|.++++..
T Consensus        91 ~~~~~~g-~~~~~l~~~l~~~  110 (113)
T 1ti3_A           91 LVDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             EEEEEEC-CCTTHHHHHHHHH
T ss_pred             EEEEEec-CCHHHHHHHHHHh
Confidence            2223567 5778899888763

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=95.95  E-value=0.0024  Score=53.42  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=40.0

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      -++.|+++||++|+++.+.+++.      .+.+..+|.++++. ...+.+.++      +.++|++.  .+|
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~------~~~vP~l~--~~g   64 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSG------RNTFPQIF--IGS   64 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHT------SSCCCEEE--ETT
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhC------CCCcCEEE--ECC
Confidence            47789999999999888777653      14677888875432 234666777      77999863  355

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=95.93  E-value=0.015  Score=49.74  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=59.6

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ +++.+... .+++.++.|. +.|   ....+.+..++..|. .+.|..+...+ ....++++|+|.+.||++++
T Consensus        10 l~~~~-~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~~   85 (111)
T 2pu9_C           10 VNKDT-FWPIVKAA-GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKIL   85 (111)
T ss_dssp             ECTTT-HHHHHTTC-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSS-TTHHHHHHHCCSBSSEEEEE
T ss_pred             echHH-HHHHHHhc-CCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-CeEEEEEecCc-chHHHHHHcCCCeeeEEEEE
Confidence            45544 45555432 2455566554 322   123455666777765 36777775432 24789999999999999998


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|. +.+.|.++++..
T Consensus        86 ~~G~-~~~~~~G~-~~~~l~~~l~~~  109 (111)
T 2pu9_C           86 KENS-VVGEVTGA-KYDKLLEAIQAA  109 (111)
T ss_dssp             SSSS-EEEEEESS-CHHHHHHHHHHH
T ss_pred             eCCc-EEEEEcCC-CHHHHHHHHHHh
Confidence            7653 22235676 478899888763

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=95.91  E-value=0.0091  Score=52.72  Aligned_cols=64  Identities=11%  Similarity=0.094  Sum_probs=44.5

Q ss_pred             hccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccC
Q 006171          303 YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       303 ~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~  366 (658)
                      +...+.+..+.........++++|+|..+|++++|..++.....+.|..+.+.|.++++...-+
T Consensus        59 ~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           59 FNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             HHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             HhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3334555555433223467999999999999999954444333478988999999999886544

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=95.89  E-value=0.0046  Score=59.98  Aligned_cols=61  Identities=8%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeE
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      .+++++|.|| +.||+.|..-.|.+.++.+++ ..+.|..|+++........+++++      +..||.
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~------~~~f~~  138 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEG------LSNVIT  138 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTT------CTTEEE
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcC------CCCceE
Confidence            4678999998 789999999999999999988 335788888875444344555555      445663

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=95.88  E-value=0.0039  Score=57.73  Aligned_cols=87  Identities=15%  Similarity=0.191  Sum_probs=58.1

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cce------------------------------e-----eee
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANT------------------------------G-----MVE  192 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~v------------------------------g-----~Vd  192 (658)
                      .+.+..+|.|..++|++|+++.+.++++.+ +.=.   ..+                              +     .-.
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l~~-v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~~~   90 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKMTD-VTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSI   90 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTCCS-EEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTCCC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhcCc-eEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccHH
Confidence            357889999999999999999988776411 0000   000                              0     011


Q ss_pred             ccc-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          193 LGD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       193 c~e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |.. -.....+++++|      |+|.||+++ .+|.       .+.|..+.+.|.+.+.+.
T Consensus        91 ~~~~v~~~~~la~~~g------I~gtPt~vi-~nG~-------~i~G~~~~~~l~~~i~~~  137 (147)
T 3gv1_A           91 CDNPVAETTSLGEQFG------FNGTPTLVF-PNGR-------TQSGYSPMPQLEEIIRKN  137 (147)
T ss_dssp             CSCSHHHHHHHHHHTT------CCSSCEEEC-TTSC-------EEESCCCTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhC------CCccCEEEE-ECCE-------EeeCCCCHHHHHHHHHHH
Confidence            221 112344778888      899999997 5552       358999999999998776

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=95.85  E-value=0.0045  Score=62.49  Aligned_cols=89  Identities=9%  Similarity=-0.064  Sum_probs=61.2

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh------------------------hhHHHhhCCCC
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL------------------------ATHLAERKPIG  209 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~------------------------~~~Lc~k~~i~  209 (658)
                      ++|+.|+++||+.|....|.+.+++++++.. +.|..|+++....                        ...+++.|+  
T Consensus        36 vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~yg--  113 (249)
T 3a2v_A           36 FVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLG--  113 (249)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHT--
T ss_pred             EEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhC--
Confidence            4566789999999999999999999999865 4888888874211                        123555555  


Q ss_pred             ccccee-------eeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          210 QIFFRR-------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       210 k~f~V~-------~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                          |.       .+|+++++-+.+.   ....+.|    .|+.+.|...+...
T Consensus       114 ----v~~~~~g~~~~p~~fIID~dG~---I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          114 ----LLHAESATHTVRGVFIVDARGV---IRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             ----CCCTTCSSSCCEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             ----CccccCCCcccceEEEECCCCe---EEEEEecCCcccchhHHHHHHHHHH
Confidence                65       8999888854433   1122223    36788888877553

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=95.84  E-value=0.0021  Score=60.38  Aligned_cols=57  Identities=11%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             cCCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCC
Q 006171          151 HDSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       151 ~~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      ..++++++.|| +.||++|..-.|.+.++.++++... .+..|+.+........+++++
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~   89 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENR   89 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcC
Confidence            35788888998 9999999999999999988887664 777888875545556777776

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=95.83  E-value=0.0084  Score=53.89  Aligned_cols=69  Identities=20%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             cHHHHHHHHhhccCceEEEEEecc-------cccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          293 SPFVRQISRNYWAYASFAFVLWRE-------EESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~-------~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      .|.+..++..|.  +.|+.+...+       .....++++|+|.+.||+++|+++. ....+.|..+.+.+.++++...
T Consensus        50 ~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~G~-~v~~~~G~~~~~~~~~~i~~~~  125 (135)
T 3emx_A           50 WPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGR-IVDKLVGATPWSLKVEKAREIY  125 (135)
T ss_dssp             HHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEETTE-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             ChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcCCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            466666777664  7788887622       2246799999999999999999543 3334789989999999988743

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=95.82  E-value=0.0098  Score=54.73  Aligned_cols=93  Identities=14%  Similarity=0.193  Sum_probs=61.5

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      ++..+.. ..+++.+|.|. +-   |....|.+..++..|.+.+.|+.|...  +...++++|+|.+.||+++|+++...
T Consensus        14 ~~~~i~~-~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           14 VDQAIKS-TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVD--QTAVYTQYFDISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             HHHHHHH-CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETT--TCCHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             HHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECC--cCHHHHHHcCCCccCeEEEEECCeEE
Confidence            4444432 23456666553 22   222456667788888766777777643  24689999999999999999876422


Q ss_pred             e--------eeecC-CCChHHHHHHHHhh
Q 006171          344 P--------VVYYG-SFNNSRLSEVMEQN  363 (658)
Q Consensus       344 p--------~~y~g-~~~~~~L~~fi~~~  363 (658)
                      .        ..+.| ..+.+.|.++++..
T Consensus        91 ~~~~g~~~~~~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A           91 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             EEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred             EeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence            0        23567 67888899888763

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=95.80  E-value=0.0022  Score=59.70  Aligned_cols=55  Identities=13%  Similarity=0.030  Sum_probs=43.3

Q ss_pred             CCCcEEEEEec-cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.||+ .||++|..-.|.+.++.+++ ..+.|..|+++........+++++
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~   96 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEG   96 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcC
Confidence            35789999995 99999999999999998888 445788888875444455677776

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=95.77  E-value=0.0013  Score=63.26  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             CCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecc
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELG  194 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~  194 (658)
                      ..+.+|+||+.||+||+++.|.+   +++++.+.+.+++..++..
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   58 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS   58 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence            46899999999999999999986   6787777666777777766

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=95.76  E-value=0.0053  Score=57.78  Aligned_cols=56  Identities=9%  Similarity=-0.006  Sum_probs=44.0

Q ss_pred             CCCcEEEEEe-ccCCCCCCC-ChHHHHHHHHHhhcc-c-ceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQ-FSGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~-l~P~w~~~A~~l~g~-~-~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.|| +.||+.|.. -.|.+.++.++++.. + .|..|+.+........+++++
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~   89 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHG   89 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcC
Confidence            3567888887 999999998 899999999988653 5 788888775444556778876

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=95.72  E-value=0.05  Score=48.52  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=46.0

Q ss_pred             HHHHHhhccCceEEEEEecc--cccHhHHhhcCCCCCCEEEEEeCCCCCe--eeecCCCChHHHHHHHHh
Q 006171          297 RQISRNYWAYASFAFVLWRE--EESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       297 ~~~A~~~~~~~~f~~v~~~~--~~s~~l~~~f~V~~~Ptlvlfk~~~~~p--~~y~g~~~~~~L~~fi~~  362 (658)
                      ..++..+. .+.+..+....  .....++++|+|.+.|++++|..++...  ..+.|..+.+.|.++++.
T Consensus        57 ~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~  125 (134)
T 2fwh_A           57 PQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  125 (134)
T ss_dssp             HHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence            34555554 36777776533  2246799999999999999994333332  357899999999999876

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=95.69  E-value=0.014  Score=51.37  Aligned_cols=94  Identities=12%  Similarity=0.072  Sum_probs=60.4

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccc--cHhHHhhcCCCC-CCEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVES-APAI  334 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~--s~~l~~~f~V~~-~Ptl  334 (658)
                      +++.+.++++++.   +++.+++|.. .|   ....+.+...+..  +.+.|.++.+.+..  +..++.+|||.+ -|++
T Consensus        11 i~s~e~f~~ii~~---~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~   85 (112)
T 3iv4_A           11 LSSIDQFEQVIEE---NKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQA   85 (112)
T ss_dssp             CCSHHHHHHHHHH---CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEE
T ss_pred             cCCHHHHHHHHhc---CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCCeE
Confidence            4444446667654   4577777754 22   1123444445543  57889999875531  245899999995 8999


Q ss_pred             EEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          335 VFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       335 vlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ++|++|...-...++.++...|.+.+
T Consensus        86 il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           86 FYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             EEEECCEEEEEeeccccCHHHHHHhh
Confidence            99998754333357888888877654

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=95.68  E-value=0.0089  Score=51.32  Aligned_cols=76  Identities=7%  Similarity=0.062  Sum_probs=47.2

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc--chh----hhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--IRL----ATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e--~~~----~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ...-++.|+++||++|+++.+.+++..      +.+-.+|.+.  ...    ...|.+..+      +.++|+|++  +|
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g------~~~vP~l~i--~~   85 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNP------SVSFPTTII--ND   85 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCT------TCCSCEEEE--TT
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCC------CCccCEEEE--CC
Confidence            344577799999999999998887653      2344455542  111    111233456      779999876  23


Q ss_pred             CCCCCCcccccCCCCHhHHHHHH
Q 006171          227 CKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       227 ~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      .       .+-|..+.+.|.+++
T Consensus        86 ~-------~~igg~~~~~l~~~L  101 (103)
T 3nzn_A           86 E-------KAIVGFKEKEIRESL  101 (103)
T ss_dssp             T-------EEEESCCHHHHHHHT
T ss_pred             C-------EEEEcCCHHHHHHHh
Confidence            1       235667777777654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=95.65  E-value=0.0061  Score=53.10  Aligned_cols=80  Identities=14%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             cEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEeccc----ccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC
Q 006171          279 KVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREE----ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS  350 (658)
Q Consensus       279 ~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~----~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~  350 (658)
                      ++.+++|. +.|   ....|.+..++..+...  +.++.....    ....++++|+|.+.||+++|+++. ....+.|.
T Consensus        30 ~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G~-~~~~~~G~  106 (118)
T 1zma_A           30 ETATFFIGRKTCPYCRKFAGTLSGVVAETKAH--IYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQ-INVRCDSS  106 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC--CEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTE-EEEECCTT
T ss_pred             CeEEEEEECCCCccHHHHHHHHHHHHHhcCCe--EEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECCE-EEEEecCC
Confidence            45556554 322   22345566676666433  444433222    124788999999999999998653 33347888


Q ss_pred             CChHHHHHHHH
Q 006171          351 FNNSRLSEVME  361 (658)
Q Consensus       351 ~~~~~L~~fi~  361 (658)
                      .+.+.|.+|++
T Consensus       107 ~~~~~l~~~l~  117 (118)
T 1zma_A          107 MSAQEIKDFAG  117 (118)
T ss_dssp             CCHHHHHHHHT
T ss_pred             CCHHHHHHHhh
Confidence            89999999885

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=95.64  E-value=0.025  Score=49.44  Aligned_cols=96  Identities=14%  Similarity=0.127  Sum_probs=59.6

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ ++..+... .+++.++.|. +.|   ....|.+..++..|. .+.|..+...+ +...++++|+|.+.||++++
T Consensus        23 l~~~~-~~~~~~~~-~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~~   98 (124)
T 1faa_A           23 VNKDT-FWPIVKAA-GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKIL   98 (124)
T ss_dssp             ECTTT-HHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSS-TTHHHHHHHCCSSSSEEEEE
T ss_pred             ecchh-HHHHHHhc-CCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-CCEEEEEecCc-chHHHHHHcCCCeeeEEEEE
Confidence            45544 44455432 3455566554 322   123455666777765 46677765432 24779999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|.. .+.|.++++..
T Consensus        99 ~~G~-~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           99 KENS-VVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             ETTE-EEEEEESSC-HHHHHHHHHHH
T ss_pred             eCCc-EEEEEcCCC-HHHHHHHHHHh
Confidence            8653 222356764 78899988763

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=95.61  E-value=0.0057  Score=58.67  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=42.3

Q ss_pred             CCc-EEEEEeccCCCCCCC-ChHHHHHHHHHhhccc-c-eeeeecccchhhhHHHhhCC
Q 006171          153 SKP-WLIQVYSDGSYLCGQ-FSGAWKTIAALLEGIA-N-TGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       153 ~~~-~lV~FYapwC~~Ck~-l~P~w~~~A~~l~g~~-~-vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      +++ +|+.|++.||+.|.. -.|.+.+++++++..+ . |..|+.++.......+++++
T Consensus        56 Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~  114 (184)
T 3uma_A           56 GKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSG  114 (184)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhC
Confidence            444 455556999999999 5999999999997654 6 88999886545556777776

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.58  E-value=0.024  Score=51.02  Aligned_cols=95  Identities=11%  Similarity=0.111  Sum_probs=58.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEeC-C---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFSK-T---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ +.+.+.....+++.+|.|.. -   |....|.+..++..|. .+.|+.|...+.     .++|+|...||+++|
T Consensus        15 i~~~~-~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~-----~~~~~i~~~Pt~~~~   87 (135)
T 2dbc_A           15 ISGNQ-YVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSC-----IEHYHDNCLPTIFVY   87 (135)
T ss_dssp             CCHHH-HHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSS-----CSSCCSSCCSEEEEE
T ss_pred             cCHHH-HHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcC-----cccCCCCCCCEEEEE
Confidence            44333 44444433334566776643 2   2224566677777763 466766654332     278999999999999


Q ss_pred             eCCCCCeeeecCC-------CChHHHHHHHHhhc
Q 006171          338 KDPGVKPVVYYGS-------FNNSRLSEVMEQNK  364 (658)
Q Consensus       338 k~~~~~p~~y~g~-------~~~~~L~~fi~~~~  364 (658)
                      +++... ..+.|.       ++.+.|.+++..+.
T Consensus        88 ~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           88 KNGQIE-GKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             SSSSCS-EEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             ECCEEE-EEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            865432 234554       36788999998864

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.52  E-value=0.014  Score=52.43  Aligned_cols=96  Identities=10%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.++..+... .+++.+|.|. +-|   ....+.+..++..|  .+.|..+..  .+...++++|+|.+.||+++|
T Consensus        25 l~~~~~~~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~--~~~~~l~~~~~v~~~Pt~~~~   99 (133)
T 3cxg_A           25 LKNTGSLNQVFSST-QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDV--DIHPKLNDQHNIKALPTFEFY   99 (133)
T ss_dssp             CCCTTHHHHHHTC--CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEET--TTCHHHHHHTTCCSSSEEEEE
T ss_pred             ecChhHHHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEec--cchHHHHHhcCCCCCCEEEEE
Confidence            44433355555433 2456666554 322   12344454455444  345555543  234789999999999999999


Q ss_pred             e--CCCC-CeeeecCCCChHHHHHHHHhh
Q 006171          338 K--DPGV-KPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k--~~~~-~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +  ++.. ....+.|. +.+.|.++++..
T Consensus       100 ~~~~g~g~~~~~~~G~-~~~~l~~~l~~~  127 (133)
T 3cxg_A          100 FNLNNEWVLVHTVEGA-NQNDIEKAFQKY  127 (133)
T ss_dssp             EEETTEEEEEEEEESC-CHHHHHHHHHHH
T ss_pred             EecCCCeEEEEEEcCC-CHHHHHHHHHHH
Confidence            7  5431 22235676 788899998764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=95.52  E-value=0.015  Score=50.14  Aligned_cols=91  Identities=19%  Similarity=0.165  Sum_probs=57.2

Q ss_pred             hhhhhhhc-CCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAKT-GPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~-~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      +++.+... ..+++.+++|. +.|   ....+.+..++..|. .+.|..+...  ....++++|+|...|++++|+++. 
T Consensus        17 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~-   92 (118)
T 2vm1_A           17 FDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVD--ELKDVAEAYNVEAMPTFLFIKDGE-   92 (118)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TSHHHHHHTTCCSBSEEEEEETTE-
T ss_pred             HHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcc--cCHHHHHHcCCCcCcEEEEEeCCe-
Confidence            55555431 12345566554 322   123455666777664 5667776543  247899999999999999997653 


Q ss_pred             CeeeecCCCChHHHHHHHHhh
Q 006171          343 KPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ....+.| .+.+.|.++++..
T Consensus        93 ~~~~~~g-~~~~~l~~~l~~~  112 (118)
T 2vm1_A           93 KVDSVVG-GRKDDIHTKIVAL  112 (118)
T ss_dssp             EEEEEES-CCHHHHHHHHHHH
T ss_pred             EEEEecC-CCHHHHHHHHHHH
Confidence            2223567 5788899998764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=94.48  E-value=0.0023  Score=53.83  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=54.3

Q ss_pred             CcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+++|. +   .|....+.+..++..+.+.+.|..+...  ....++++|+|...|++++|+++. ....+.|..+.
T Consensus        19 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~g~~~~   95 (106)
T 2yj7_A           19 DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD--ENPNTAAQYGIRSIPTLLLFKNGQ-VVDRLVGAQPK   95 (106)
Confidence            345566553 2   2333456666677776655666666432  246799999999999999996543 33346788778


Q ss_pred             HHHHHHHHh
Q 006171          354 SRLSEVMEQ  362 (658)
Q Consensus       354 ~~L~~fi~~  362 (658)
                      +.|.+++++
T Consensus        96 ~~l~~~l~~  104 (106)
T 2yj7_A           96 EALKERIDK  104 (106)
Confidence            888888765

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=95.45  E-value=0.0038  Score=59.82  Aligned_cols=40  Identities=13%  Similarity=0.217  Sum_probs=34.5

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~  194 (658)
                      +++.+|+|++.||+||+++.|.++++.+.+ + +.+..++..
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~-v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-G-TDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-T-SCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-C-CeEEEEecc
Confidence            678999999999999999999999999988 3 466666654

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=95.45  E-value=0.009  Score=56.68  Aligned_cols=55  Identities=9%  Similarity=0.038  Sum_probs=40.8

Q ss_pred             CCcEEEEEe-ccCCCCCC-CChHHHHHHHHHhhccc-c-eeeeecccchhhhHHHhhCC
Q 006171          153 SKPWLIQVY-SDGSYLCG-QFSGAWKTIAALLEGIA-N-TGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck-~l~P~w~~~A~~l~g~~-~-vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      ++++++.|| +.||+.|. .-.|.+.+++++++..+ . ||.|.++........+++.+
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~  101 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHK  101 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhC
Confidence            455555555 99999999 57899999999997654 4 44588875545566788877

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=95.42  E-value=0.014  Score=51.23  Aligned_cols=92  Identities=20%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             hhhhhhhc-CCCcEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAKT-GPHKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~~-~~~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      ++..+... ..+++.+++|..    .|....+.+..++..|. .+.|..+...  ....++++|+|...||+++|+++..
T Consensus        25 ~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g~~  101 (130)
T 1wmj_A           25 FDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVD--ELKEVAEKYNVEAMPTFLFIKDGAE  101 (130)
T ss_dssp             HHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTT--TSGGGHHHHTCCSSCCCCBCTTTTC
T ss_pred             HHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEecc--chHHHHHHcCCCccceEEEEeCCeE
Confidence            45555432 234565666632    34456777887887775 4666666432  2467999999999999999976532


Q ss_pred             CeeeecCCCChHHHHHHHHhhc
Q 006171          343 KPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                       ...+.| .+.+.|.++++...
T Consensus       102 -~~~~~g-~~~~~l~~~l~~~~  121 (130)
T 1wmj_A          102 -ADKVVG-ARKDDLQNTIVKHV  121 (130)
T ss_dssp             -CBCCCT-TCTTTHHHHHHHHT
T ss_pred             -EEEEeC-CCHHHHHHHHHHHH
Confidence             233567 57788999988743

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=95.41  E-value=0.015  Score=57.34  Aligned_cols=92  Identities=8%  Similarity=0.042  Sum_probs=59.5

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +...+.....++++||.|. +.|   ....|.+..+|..|. .+.|+.|...   ...++.+|+|..+||+++|+++. .
T Consensus       110 f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~---~~~l~~~~~i~~~PTl~~~~~G~-~  184 (217)
T 2trc_P          110 FLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS---NTGAGDRFSSDVLPTLLVYKGGE-L  184 (217)
T ss_dssp             HHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH---HHTCSTTSCGGGCSEEEEEETTE-E
T ss_pred             HHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC---cHHHHHHCCCCCCCEEEEEECCE-E
Confidence            4455543333456666553 322   223566777888773 6778887643   45688999999999999998653 2


Q ss_pred             eeeecCCCC-------hHHHHHHHHhhc
Q 006171          344 PVVYYGSFN-------NSRLSEVMEQNK  364 (658)
Q Consensus       344 p~~y~g~~~-------~~~L~~fi~~~~  364 (658)
                      ...+.|..+       .+.|..|+..+.
T Consensus       185 v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          185 ISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            233555443       488999998764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=95.34  E-value=0.021  Score=50.28  Aligned_cols=92  Identities=14%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             hhhhhhhcCCCcEEEEEEeCC--------C---CCCcHHHHHHHHhhccCceEEEEEecc-----cccHhHHhhcCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFSKT--------G---ERASPFVRQISRNYWAYASFAFVLWRE-----EESSIWWNTFEVESA  331 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~~--------~---~~~~~~~~~~A~~~~~~~~f~~v~~~~-----~~s~~l~~~f~V~~~  331 (658)
                      ++..+... .+++.++.|...        |   ....|.+..++..+.+.+.|..+...+     .....++++|+|.+.
T Consensus        15 ~~~~~~~~-~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~   93 (123)
T 1wou_A           15 FHRAVEQH-NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAV   93 (123)
T ss_dssp             HHHHHHTT-TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSS
T ss_pred             HHHHHHHh-CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCee
Confidence            44444432 245666666432        2   112455666777776667777776531     224679999999999


Q ss_pred             CEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ||+++|+++ .....+.| .+.+.|.+|+++
T Consensus        94 Pt~~~~~~~-~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           94 PTLLKYGTP-QKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             SEEEETTSS-CEEEGGGG-GCHHHHHHHHHC
T ss_pred             CEEEEEcCC-ceEecccc-CCHHHHHHHHhc
Confidence            999999862 22221233 467788888864

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=95.32  E-value=0.016  Score=51.53  Aligned_cols=85  Identities=11%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHH--HHHHhhccCceEEEEEecc-cccHhHHhhcCC---CCCCEEEEEeCCCCCeeee
Q 006171          278 HKVKVIFFSK-TG---ERASPFVR--QISRNYWAYASFAFVLWRE-EESSIWWNTFEV---ESAPAIVFLKDPGVKPVVY  347 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~--~~A~~~~~~~~f~~v~~~~-~~s~~l~~~f~V---~~~Ptlvlfk~~~~~p~~y  347 (658)
                      +++.+|.|.. -|   ....+.+.  .++..+.+.+.+..|...+ .....++++|+|   .+.||+++|..++.....+
T Consensus        29 ~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~  108 (133)
T 3fk8_A           29 HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTT  108 (133)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEEEC
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEEEe
Confidence            4566666643 22   12345555  5666665667777776532 234789999999   9999999994444333334


Q ss_pred             cC-------CCChHHHHHHHHh
Q 006171          348 YG-------SFNNSRLSEVMEQ  362 (658)
Q Consensus       348 ~g-------~~~~~~L~~fi~~  362 (658)
                      .|       .++.+.+.+|++.
T Consensus       109 ~g~~~~~~~~~~~~~l~~~l~~  130 (133)
T 3fk8_A          109 KGGELANARKMSDQGIYDFFAK  130 (133)
T ss_dssp             CSCTTTTGGGSCHHHHHHHHHH
T ss_pred             cCCcccccccCCHHHHHHHHHH
Confidence            55       4677888888875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=95.30  E-value=0.017  Score=52.56  Aligned_cols=83  Identities=13%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             CcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCee--------
Q 006171          278 HKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV--------  345 (658)
Q Consensus       278 ~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~--------  345 (658)
                      +++.+|.|. +-   |....|.+..++..+.+.+.|+.|...+  ..+++++|+|.+.||+++|+++.....        
T Consensus        23 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~  100 (142)
T 1qgv_A           23 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN  100 (142)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTSSCSCSSCEEEEEETTEEEEEECC-----
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc--CHHHHHHcCCCCCCEEEEEECCcEEEEecCCCCcc
Confidence            456666554 22   2224566777888886677777776443  467999999999999999987643221        


Q ss_pred             eecCCCC-hHHHHHHHHh
Q 006171          346 VYYGSFN-NSRLSEVMEQ  362 (658)
Q Consensus       346 ~y~g~~~-~~~L~~fi~~  362 (658)
                      ...|.++ .+.|.++++.
T Consensus       101 ~~~g~~~~~~~l~~~i~~  118 (142)
T 1qgv_A          101 KINWAMEDKQEMVDIIET  118 (142)
T ss_dssp             -CCSCCSCHHHHHHHHHH
T ss_pred             eeeeecCcHHHHHHHHHH
Confidence            1234443 6778888776

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=95.22  E-value=0.015  Score=52.01  Aligned_cols=82  Identities=22%  Similarity=0.317  Sum_probs=54.3

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|. +.|   ....+.+..++..|. .+.|..|...  +...++++|+|.+.||+++++++. ....+.|. +.
T Consensus        46 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~-~~  120 (139)
T 3d22_A           46 GKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVD--ELSDFSASWEIKATPTFFFLRDGQ-QVDKLVGA-NK  120 (139)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TSHHHHHHTTCCEESEEEEEETTE-EEEEEESC-CH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCc--ccHHHHHHcCCCcccEEEEEcCCe-EEEEEeCC-CH
Confidence            345556554 322   123455666777663 5667776543  247899999999999999997553 22336777 78


Q ss_pred             HHHHHHHHhhc
Q 006171          354 SRLSEVMEQNK  364 (658)
Q Consensus       354 ~~L~~fi~~~~  364 (658)
                      +.|.++++...
T Consensus       121 ~~l~~~l~~~~  131 (139)
T 3d22_A          121 PELHKKITAIL  131 (139)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88999988754

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=95.20  E-value=0.0054  Score=57.18  Aligned_cols=61  Identities=16%  Similarity=0.048  Sum_probs=45.7

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      .+++++|.|| +.||++|..-.|.+.++.++ + .+.|..|+++........+++++      +..||.+
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~-~~~vv~is~d~~~~~~~~~~~~~------~~~~~~l  106 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-E-EGIVLTISADLPFAQKRWCASAG------LDNVITL  106 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T-TSEEEEEESSCHHHHHHHHHHHT------CSSCEEE
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-C-CCEEEEEECCCHHHHHHHHHHcC------CCceEEc
Confidence            3578899998 78999999999999888776 3 34777888875555566777777      5456644

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=95.18  E-value=0.0072  Score=52.70  Aligned_cols=56  Identities=16%  Similarity=0.269  Sum_probs=37.1

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc----hh-hhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI----RL-ATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~----~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      ++.|+++||++|++..+.+++..      +.+..+|.+..    .. ...|.+..|      +..+|+|  |.+|
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~~~~~l~~~~g------~~tvP~i--fi~g   81 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRLG------VQPLVVELDQLGPQGPQLQKVLERLTG------QHTVPNV--FVCG   81 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHHHHHHHS------CCSSCEE--EETT
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CCCeEEEeecCCCChHHHHHHHHHHhC------CCCcCEE--EECC
Confidence            67799999999999888776542      24455666531    12 222555557      7799998  4455

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=95.16  E-value=0.025  Score=50.06  Aligned_cols=79  Identities=10%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             cEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecC-----
Q 006171          279 KVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYG-----  349 (658)
Q Consensus       279 ~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g-----  349 (658)
                      ++.++.|. +-   |....|.+..+|..|. .+.|..|...+     ...+|+|.+.||+++|+++... ..+.|     
T Consensus        24 ~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~-----~~~~~~v~~~PT~~~fk~G~~v-~~~~G~~~~g   96 (118)
T 3evi_A           24 VWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNS-----CIQHYHDNCLPTIFVYKNGQIE-AKFIGIIECG   96 (118)
T ss_dssp             CEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGG-----TSTTCCGGGCSEEEEEETTEEE-EEEESTTTTT
T ss_pred             CeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHHHCCCCCCCEEEEEECCEEE-EEEeChhhhC
Confidence            36666553 32   2234677788888875 57888886443     3589999999999999986422 12333     


Q ss_pred             --CCChHHHHHHHHhhc
Q 006171          350 --SFNNSRLSEVMEQNK  364 (658)
Q Consensus       350 --~~~~~~L~~fi~~~~  364 (658)
                        .++.+.|..++.++.
T Consensus        97 g~~~~~~~le~~L~~~g  113 (118)
T 3evi_A           97 GINLKLEELEWKLAEVG  113 (118)
T ss_dssp             CSSCCHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHcC
Confidence              357888999987653

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.07  E-value=0.043  Score=52.32  Aligned_cols=96  Identities=19%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             cCCCcEEEEEeccCCCCCCCChH-HH--HHHHHHhhcccceeeeecccchh------------hhHHH---hhCCCCccc
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRL------------ATHLA---ERKPIGQIF  212 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P-~w--~~~A~~l~g~~~vg~Vdc~e~~~------------~~~Lc---~k~~i~k~f  212 (658)
                      ...++.+|.+++|||..|..|.. +|  +++.+.++....+-..|.+....            -..++   +.++     
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~-----  127 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQK-----  127 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSC-----
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcC-----
Confidence            46889999999999999988762 22  33555565555566666653210            01233   3366     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       +.+||++.++..............|..+++++++.+...
T Consensus       128 -~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          128 -TDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             -STTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             -CCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence             889999999864322112345568999999999887665

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=94.95  E-value=0.014  Score=50.01  Aligned_cols=61  Identities=15%  Similarity=0.084  Sum_probs=42.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhh-hHHHhhC-CCCcccceeeeeEEEEcCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERK-PIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~-~~Lc~k~-~i~k~f~V~~yPTl~~f~~g  226 (658)
                      +...-++.|.+|||++|++..+.+++..      +.+..+|.++++.. ..+.+.. +      +.++|+|  |.+|
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~------i~y~~idI~~~~~~~~~l~~~~~g------~~~vP~i--fi~g   75 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRKG------VEFQEYCIDGDNEAREAMAARANG------KRSLPQI--FIDD   75 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHHT------CCCEEEECTTCHHHHHHHHHHTTT------CCCSCEE--EETT
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHCC------CCCEEEEcCCCHHHHHHHHHHhCC------CCCCCEE--EECC
Confidence            3445677899999999999988777652      36777888754332 2344554 6      7799988  3455

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=94.87  E-value=0.012  Score=51.16  Aligned_cols=67  Identities=7%  Similarity=0.052  Sum_probs=43.4

Q ss_pred             CCCCccccCCCcEEEEEec-----cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhh-hHHHhhCCCCcccceeee
Q 006171          144 EDFPSIFHDSKPWLIQVYS-----DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGL  217 (658)
Q Consensus       144 ~nF~~~v~~~~~~lV~FYa-----pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~-~~Lc~k~~i~k~f~V~~y  217 (658)
                      +.+++++.+++  ++.|+.     +||++|++..+.+++.      .+.+..+|.++++.. ..|.+..+      ..++
T Consensus         6 ~~~~~~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g------~~~v   71 (109)
T 1wik_A            6 SGLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSN------WPTY   71 (109)
T ss_dssp             CCHHHHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHS------CCSS
T ss_pred             HHHHHHhccCC--EEEEEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhC------CCCC
Confidence            34455555544  455777     9999999887776543      247888888855332 23555556      6789


Q ss_pred             eEEEEcCCC
Q 006171          218 PSLVAFPPG  226 (658)
Q Consensus       218 PTl~~f~~g  226 (658)
                      |+|  |.+|
T Consensus        72 P~i--fi~g   78 (109)
T 1wik_A           72 PQL--YVRG   78 (109)
T ss_dssp             CEE--ECSS
T ss_pred             CEE--EECC
Confidence            985  5565

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=93.82  E-value=0.005  Score=54.56  Aligned_cols=85  Identities=21%  Similarity=0.259  Sum_probs=53.3

Q ss_pred             CcEEEEEEe-C---CCCCCcHHH---HHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeC-CCCC--eeee
Q 006171          278 HKVKVIFFS-K---TGERASPFV---RQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVK--PVVY  347 (658)
Q Consensus       278 ~~v~vl~f~-~---~~~~~~~~~---~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~-~~~~--p~~y  347 (658)
                      +++.+|.|. +   .|....+.+   ..++..+.+.+.+..+.....+...++++|+|.++||+++|.. ++..  ...+
T Consensus        19 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~   98 (130)
T 2lst_A           19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRL   98 (130)
Confidence            455566553 2   233344555   5555555555666666543333467999999999999999942 2222  2346


Q ss_pred             cCCCChHHHHHHHHh
Q 006171          348 YGSFNNSRLSEVMEQ  362 (658)
Q Consensus       348 ~g~~~~~~L~~fi~~  362 (658)
                      .|..+.+.|.++++.
T Consensus        99 ~G~~~~~~l~~~l~~  113 (130)
T 2lst_A           99 FGSRPRAEFLKELRQ  113 (130)
Confidence            787787888888765

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=94.67  E-value=0.042  Score=46.53  Aligned_cols=78  Identities=17%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      -++.|..|||++|++.....++.      .+.+-.+|.++++.......+...|    .+.+|+|++ .+|..       
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~------gi~y~~idi~~d~~~~~~~~~~~~G----~~tVP~I~i-~Dg~~-------   66 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN------RIAYDEVDIEHNRAAAEFVGSVNGG----NRTVPTVKF-ADGST-------   66 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHHSSS----SSCSCEEEE-TTSCE-------
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc------CCceEEEEcCCCHHHHHHHHHHcCC----CCEeCEEEE-eCCEE-------
Confidence            46778899999998766444321      2367788888655443333332112    668999764 44431       


Q ss_pred             ccCCCCHhHHHHHHHHh
Q 006171          236 FEGELSVDAVTDWFATA  252 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv~k~  252 (658)
                       -+..+.++|.+++.+.
T Consensus        67 -l~~~~~~el~~~L~el   82 (92)
T 2lqo_A           67 -LTNPSADEVKAKLVKI   82 (92)
T ss_dssp             -EESCCHHHHHHHHHHH
T ss_pred             -EeCCCHHHHHHHHHHh
Confidence             1234678888887665

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=94.65  E-value=0.025  Score=49.48  Aligned_cols=85  Identities=19%  Similarity=0.166  Sum_probs=53.8

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC---CCCeeeecCC
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP---GVKPVVYYGS  350 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~---~~~p~~y~g~  350 (658)
                      +++.++.|. +.|   ....+.+..++..+ ..+.|..+....  ...++++|+|.+.||+++|++.   +..-..+.|.
T Consensus        23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~   99 (118)
T 2f51_A           23 PGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDK--NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGA   99 (118)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCC--CHHHHHhcCCCCCCEEEEEeCCCCcceEEEeecCC
Confidence            345566554 322   12345556677766 567777776433  4779999999999999999862   2122235676


Q ss_pred             CChHHHHHHHHhhccC
Q 006171          351 FNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       351 ~~~~~L~~fi~~~~~~  366 (658)
                      . ...|.+.+..+.-+
T Consensus       100 ~-~~~l~~~~~~~~~~  114 (118)
T 2f51_A          100 D-VSRIKADIEKFKHH  114 (118)
T ss_dssp             C-HHHHHHHHHHHC--
T ss_pred             C-HHHHHHHHHHhhhc
Confidence            4 55699999887654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=94.48  E-value=0.056  Score=54.23  Aligned_cols=93  Identities=10%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~  343 (658)
                      +...+.....++++||.|. +-   |....|.+..+|..|. .+.|+.|....   ..++.+|+|..+||+++|+++...
T Consensus       123 f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-~v~f~kVd~d~---~~l~~~~~I~~~PTll~~~~G~~v  198 (245)
T 1a0r_P          123 FLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP-MVKFCKIKASN---TGAGDRFSSDVLPTLLVYKGGELL  198 (245)
T ss_dssp             HHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-TSEEEEEEHHH---HCCTTSSCTTTCSEEEEEETTEEE
T ss_pred             HHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CCEEEEEeCCc---HHHHHHCCCCCCCEEEEEECCEEE
Confidence            4444433223556666553 32   2224577777888875 47788776432   558899999999999999965321


Q ss_pred             eeeecCC-------CChHHHHHHHHhhcc
Q 006171          344 PVVYYGS-------FNNSRLSEVMEQNKL  365 (658)
Q Consensus       344 p~~y~g~-------~~~~~L~~fi~~~~~  365 (658)
                       ..+.|.       ++...|..|+..+..
T Consensus       199 -~~~vG~~~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          199 -SNFISVTEQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             -EEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred             -EEEeCCcccccccccHHHHHHHHHHcCC
Confidence             123332       456789999988643

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=94.38  E-value=0.039  Score=54.92  Aligned_cols=96  Identities=5%  Similarity=-0.117  Sum_probs=60.5

Q ss_pred             CcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHh------hC--CC------------Ccc
Q 006171          154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE------RK--PI------------GQI  211 (658)
Q Consensus       154 ~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~------k~--~i------------~k~  211 (658)
                      +++++.|| ++||+.|..-.|.+.++.++++.. +.|..|.++........++      ++  ++            .+.
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~  109 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVK  109 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHH
Confidence            37778888 999999999999999999998764 3777777774322222222      11  11            123


Q ss_pred             ccee------------eeeEEEEcCCCCCCCCCcccccC----CCCHhHHHHHHHHh
Q 006171          212 FFRR------------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~------------~yPTl~~f~~g~~~~~~~~~Y~G----~rs~~~Lv~fv~k~  252 (658)
                      |.+.            ..|+++++-+.+.   ....+.|    .|+.++|+..+...
T Consensus       110 ygv~~~~~~~~~g~~~~~p~~fiID~~G~---I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          110 LGMVDPDERTSTGMPLTCRAVFIIGPDKK---LKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             TTCEEEEEECTTCCEEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCcCcccccCCCcccccceEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHHH
Confidence            3353            5788888855443   1122222    46788888887654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=94.27  E-value=0.075  Score=46.38  Aligned_cols=67  Identities=22%  Similarity=0.338  Sum_probs=47.8

Q ss_pred             HHHHHHHHhhccCceEEEEEecc---------------------cccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          294 PFVRQISRNYWAYASFAFVLWRE---------------------EESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       294 ~~~~~~A~~~~~~~~f~~v~~~~---------------------~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      +.+..++..|. .+.|..|...+                     .....+++.|+|...|+++++..++... .+.|..+
T Consensus        45 ~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~  122 (136)
T 1zzo_A           45 PVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMS  122 (136)
T ss_dssp             HHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCC
T ss_pred             HHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCC
Confidence            44455666665 56777776432                     1135688999999999999997555443 6889889


Q ss_pred             hHHHHHHHHh
Q 006171          353 NSRLSEVMEQ  362 (658)
Q Consensus       353 ~~~L~~fi~~  362 (658)
                      .+.|.++++.
T Consensus       123 ~~~l~~~l~~  132 (136)
T 1zzo_A          123 QDELTRRVTA  132 (136)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8999998876

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=94.24  E-value=0.053  Score=48.05  Aligned_cols=42  Identities=14%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       319 s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      ...+++.|+|...|+++++..++.....+.|..+.+.|.+++
T Consensus       103 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          103 KGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             SSHHHHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             chhHHHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            347899999999999999965554444578988988888876

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=94.10  E-value=0.09  Score=46.03  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhccCceEEEEEeccc--------------------ccHhHHhhcCCCCCCEEEEEeCCCCCeeeec---CC
Q 006171          294 PFVRQISRNYWAYASFAFVLWREE--------------------ESSIWWNTFEVESAPAIVFLKDPGVKPVVYY---GS  350 (658)
Q Consensus       294 ~~~~~~A~~~~~~~~f~~v~~~~~--------------------~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~---g~  350 (658)
                      +.+..++..|. .+.|..|...+.                    ....+.+.|++...|+++++..++... .+.   |.
T Consensus        44 ~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~  121 (136)
T 1lu4_A           44 PSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAA  121 (136)
T ss_dssp             HHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSC
T ss_pred             HHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCc
Confidence            34444666665 566666654331                    135688999999999999996555443 577   88


Q ss_pred             CChHHHHHHHHh
Q 006171          351 FNNSRLSEVMEQ  362 (658)
Q Consensus       351 ~~~~~L~~fi~~  362 (658)
                      .+.+.|.+++++
T Consensus       122 ~~~~~l~~~l~~  133 (136)
T 1lu4_A          122 MSQDELSGRVAA  133 (136)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            899999999876

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=94.02  E-value=0.088  Score=46.77  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=47.2

Q ss_pred             HHHHHHHHhhccCceEEEEEecc-------------------------cccHhHHhhcCCCCCCEEEEEeCCCCCeeeec
Q 006171          294 PFVRQISRNYWAYASFAFVLWRE-------------------------EESSIWWNTFEVESAPAIVFLKDPGVKPVVYY  348 (658)
Q Consensus       294 ~~~~~~A~~~~~~~~f~~v~~~~-------------------------~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~  348 (658)
                      +.+..++..|.+.+.|..+....                         .....+.+.|+|...|+++++..++.....+.
T Consensus        49 ~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  128 (148)
T 2b5x_A           49 PQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQA  128 (148)
T ss_dssp             HHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEE
T ss_pred             HHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEec
Confidence            44445666666556677665432                         12357999999999999999955443333467


Q ss_pred             CCCChHHHHHHHHh
Q 006171          349 GSFNNSRLSEVMEQ  362 (658)
Q Consensus       349 g~~~~~~L~~fi~~  362 (658)
                      |..+.+.|.++++.
T Consensus       129 g~~~~~~l~~~l~~  142 (148)
T 2b5x_A          129 GGSGMKMLEKRVNR  142 (148)
T ss_dssp             SCSTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            88788888888875

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=93.79  E-value=0.021  Score=46.82  Aligned_cols=81  Identities=9%  Similarity=-0.045  Sum_probs=45.8

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCc
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~  233 (658)
                      .-++.|+++||++|++....+++..    -...+..||..++. ....+.+..+.. .|.+.++|+|.+  +|..     
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i~~~~~~vd~~~~~~~~~el~~~~g~~-~~~~~~vP~i~i--~g~~-----   71 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----IAFDETIIDDYAQRSKFYDEMNQSGKV-IFPISTVPQIFI--DDEH-----   71 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----CCCEEEECCSHHHHHHHHHHHHTTTCC-SSCCCSSCEEEE--TTEE-----
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----CCceEEEeecCCChhHHHHHHHHhCCC-CCCCCccCEEEE--CCEE-----
Confidence            3477788999999998776665432    11234444544321 123477777620 011379999864  5521     


Q ss_pred             ccccCCCCHhHHHHHHHHh
Q 006171          234 TRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       234 ~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         -|  ..++|.++..+.
T Consensus        72 ---i~--g~~~i~~~~~~~   85 (89)
T 3msz_A           72 ---IG--GFTELKANADKI   85 (89)
T ss_dssp             ---EE--SHHHHHHTHHHH
T ss_pred             ---Ee--ChHHHHHHHHHH
Confidence               22  356777776554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.74  E-value=0.34  Score=53.76  Aligned_cols=174  Identities=14%  Similarity=0.071  Sum_probs=99.2

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~  232 (658)
                      ..++-+.++.+-|..|..+....+++|. |.+.+.+-..+ + .                 -...|++.+.++|..   .
T Consensus        18 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~s~~i~~~~~~-~-~-----------------~~~~p~~~~~~~~~~---~   74 (521)
T 1hyu_A           18 TKPVELIATLDDSAKSAEIKELLAEIAE-LSDKVTFKEDN-T-L-----------------PVRKPSFLITNPGSQ---Q   74 (521)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHT-TCTTEEEEECT-T-S-----------------SSCSSEEEEECTTCC---C
T ss_pred             CCCEEEEEEeCCCcchHHHHHHHHHHHH-hCCceEEEEcC-C-c-----------------ccCCCEEEEecCCCc---c
Confidence            3455566666668777666655555543 23333332111 1 0                 015699999877643   4


Q ss_pred             cccccCCCCHhHHHHHHHHhh--ccCCcceeeccchhhhhhhhhcCCCcEEEEEE-eCCC-CC--CcHHHHHHHHhhccC
Q 006171          233 MTRFEGELSVDAVTDWFATAI--LKLPRIFYYTKESMGKNFLAKTGPHKVKVIFF-SKTG-ER--ASPFVRQISRNYWAY  306 (658)
Q Consensus       233 ~~~Y~G~rs~~~Lv~fv~k~v--~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f-~~~~-~~--~~~~~~~~A~~~~~~  306 (658)
                      ...|.|--.=..+..|+...+  .+.|..  ++. +..+.. ... +..+.|.+| ...| .|  ..|.+..++..+. .
T Consensus        75 ~i~f~g~p~g~e~~s~~~~l~~~~~~~~~--~~~-~~~~~i-~~~-~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~  148 (521)
T 1hyu_A           75 GPRFAGSPLGHEFTSLVLALLWTGGHPSK--EAQ-SLLEQI-RDI-DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-R  148 (521)
T ss_dssp             SCEEESCCCGGGHHHHHHHHHHHTTCCCC--SCH-HHHHHH-HHC-CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-T
T ss_pred             eEEEeccCcchhHHHHHHHHHhhcCCCCC--CCH-HHHHHH-Hhc-CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-c
Confidence            578888766666666665432  122221  222 212333 222 233445555 4332 22  2455666776653 5


Q ss_pred             ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       307 ~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      +.+..+...  ..+++.++|+|.+.|++++  + + +.+ ..|..+.+.|.+++..
T Consensus       149 v~~~~vd~~--~~~~~~~~~~i~svPt~~i--~-g-~~~-~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          149 IKHTAIDGG--TFQNEITERNVMGVPAVFV--N-G-KEF-GQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             EEEEEEETT--TCHHHHHHTTCCSSSEEEE--T-T-EEE-EESCCCHHHHHHHHCC
T ss_pred             eEEEEEech--hhHHHHHHhCCCccCEEEE--C-C-EEE-ecCCCCHHHHHHHHhh
Confidence            666666532  3578999999999999977  3 2 333 5688888999999865

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=93.41  E-value=0.024  Score=62.23  Aligned_cols=89  Identities=10%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCC---CCCCcHHHHHHHHhhcc--------CceEEEEEecccccHhHHhhcCCC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWA--------YASFAFVLWREEESSIWWNTFEVE  329 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~--------~~~f~~v~~~~~~s~~l~~~f~V~  329 (658)
                      ++..+ ++..+... ..++.+|.| .+-   |....|.+..++..|.+        .+.|+.|...  ...+++++|+|.
T Consensus        28 Lt~~~-F~~~l~~~-~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d--~~~~la~~y~V~  103 (470)
T 3qcp_A           28 LSGDD-FSRVHRVA-PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA--SEVDLCRKYDIN  103 (470)
T ss_dssp             CSCSC-GGGTCTTG-GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETT--TCHHHHHHTTCC
T ss_pred             CCHHH-HHHHHHhC-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECC--CCHHHHHHcCCC
Confidence            45544 45555432 224555555 332   22346777778888762        3667776543  247899999999


Q ss_pred             CCCEEEEEeCCC-CCeeeecCCCChH
Q 006171          330 SAPAIVFLKDPG-VKPVVYYGSFNNS  354 (658)
Q Consensus       330 ~~Ptlvlfk~~~-~~p~~y~g~~~~~  354 (658)
                      ++||+++|++++ ..+..|.|..+.+
T Consensus       104 ~~PTlilf~~gg~~~~~~y~G~r~~e  129 (470)
T 3qcp_A          104 FVPRLFFFYPRDSCRSNEECGTSSLE  129 (470)
T ss_dssp             SSCEEEEEEESSCCCTTSCCCCCCEE
T ss_pred             ccCeEEEEECCCceEEEEeeCCCCHH
Confidence            999999997654 3444577764433

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=93.38  E-value=0.27  Score=44.04  Aligned_cols=85  Identities=11%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             CcEEEEEEeC-C---CCCCcHHHHHHHHhhcc-CceEEEEEecccc---------------------cHhHHhhcCCCCC
Q 006171          278 HKVKVIFFSK-T---GERASPFVRQISRNYWA-YASFAFVLWREEE---------------------SSIWWNTFEVESA  331 (658)
Q Consensus       278 ~~v~vl~f~~-~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~---------------------s~~l~~~f~V~~~  331 (658)
                      +++.+|.|.. .   |....+.+..+...|.+ .+.+..|......                     ...+.+.|+|...
T Consensus        30 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  109 (152)
T 2lja_A           30 GKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGI  109 (152)
T ss_dssp             TSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSS
T ss_pred             CCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCC
Confidence            3566665532 1   22234555556666654 2555555433321                     1268899999999


Q ss_pred             CEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      |+++++...+.....+.|..+.+.|.++++.
T Consensus       110 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  140 (152)
T 2lja_A          110 PRFILLDRDGKIISANMTRPSDPKTAEKFNE  140 (152)
T ss_dssp             CCEEEECTTSCEEESSCCCTTCHHHHHHHHH
T ss_pred             CEEEEECCCCeEEEccCCCCCHHHHHHHHHH
Confidence            9999997655433335677788889988876

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=93.28  E-value=0.094  Score=51.64  Aligned_cols=41  Identities=12%  Similarity=0.029  Sum_probs=33.4

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD  195 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e  195 (658)
                      ++|+.|.+.||+.|..-.|.+.++.++++... .|..|.++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~   75 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDS   75 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSC
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            55666679999999999999999999997653 777777763

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=93.19  E-value=0.1  Score=46.14  Aligned_cols=63  Identities=13%  Similarity=0.024  Sum_probs=46.3

Q ss_pred             HHHhhccC-----ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          299 ISRNYWAY-----ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       299 ~A~~~~~~-----~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ++..|...     ..+..|.+.......++.+|+|.+.||+++|+++. .-....|.++.+.+..|++.
T Consensus        40 i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~-ev~Ri~G~~~~~~f~~~L~~  107 (116)
T 3dml_A           40 IAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDV-ESGRLEGYPGEDFFWPMLAR  107 (116)
T ss_dssp             TTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTE-EEEEEECCCCHHHHHHHHHH
T ss_pred             HHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCE-EEeeecCCCCHHHHHHHHHH
Confidence            44455443     56777776554446789999999999999999553 33346899999999998876

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=93.08  E-value=0.16  Score=40.02  Aligned_cols=70  Identities=10%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             EEEEEeCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC-ChHHH
Q 006171          281 KVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRL  356 (658)
Q Consensus       281 ~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~-~~~~L  356 (658)
                      .|.|+.+.+   ....+.+..++..+...+.+..+.     ..+++++|+|.+.||+++  ++  +.+ +.|.. +.+.|
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~--~G--~~~-~~G~~~~~~~l   72 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV--DG--ELK-IMGRVASKEEI   72 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE--TT--EEE-ECSSCCCHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE--CC--EEE-EcCCCCCHHHH
Confidence            455665422   223455666777776555555553     467899999999999988  32  333 44877 78888


Q ss_pred             HHHH
Q 006171          357 SEVM  360 (658)
Q Consensus       357 ~~fi  360 (658)
                      .+++
T Consensus        73 ~~~l   76 (77)
T 1ilo_A           73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            7765

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=92.89  E-value=0.17  Score=45.52  Aligned_cols=86  Identities=14%  Similarity=0.181  Sum_probs=53.6

Q ss_pred             CcEEEEEEeC-CC---CCCcHHHHHHHHhhcc-CceEEEEEecccc--------------------cHhHHhhcCCCCCC
Q 006171          278 HKVKVIFFSK-TG---ERASPFVRQISRNYWA-YASFAFVLWREEE--------------------SSIWWNTFEVESAP  332 (658)
Q Consensus       278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~--------------------s~~l~~~f~V~~~P  332 (658)
                      .++.+|.|.. .|   ....+.+..+...|.+ .+.+..|...+..                    ...+.+.|+|...|
T Consensus        26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  105 (151)
T 2f9s_A           26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP  105 (151)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCC
Confidence            3566665543 22   1112344445555654 3666666543321                    24689999999999


Q ss_pred             EEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          333 AIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       333 tlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++++...+.....+.|..+.+.|.++++..
T Consensus       106 ~~~lid~~G~i~~~~~G~~~~~~l~~~l~~l  136 (151)
T 2f9s_A          106 TTFLINPEGKVVKVVTGTMTESMIHDYMNLI  136 (151)
T ss_dssp             EEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             eEEEECCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence            9999955444333467888899999998863

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=92.79  E-value=0.016  Score=52.24  Aligned_cols=69  Identities=12%  Similarity=0.254  Sum_probs=43.1

Q ss_pred             CCCccccCCCcEEEEEeccCCCCCCCC-hHHHHHHHHHhhcccceeeeecccch----hhhHHHhhCCCCcccceeeeeE
Q 006171          145 DFPSIFHDSKPWLIQVYSDGSYLCGQF-SGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       145 nF~~~v~~~~~~lV~FYapwC~~Ck~l-~P~w~~~A~~l~g~~~vg~Vdc~e~~----~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      .+++.+...+  ++.|+++||++|++. .+.+++...   ..+.+..+|.+.+.    ....|.+.+|      +..+|+
T Consensus        29 ~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~---~~i~~~~vdvd~~~~~~~~~~~L~~~~g------~~tVP~   97 (129)
T 3ctg_A           29 HVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNV---PKSKALVLELDEMSNGSEIQDALEEISG------QKTVPN   97 (129)
T ss_dssp             HHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHS------CCSSCE
T ss_pred             HHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCc---cCCCcEEEEccccCCHHHHHHHHHHHhC------CCCCCE
Confidence            3444454343  678999999999987 666554321   11356667766432    1235777777      779999


Q ss_pred             EEEcCCC
Q 006171          220 LVAFPPG  226 (658)
Q Consensus       220 l~~f~~g  226 (658)
                      |  |.+|
T Consensus        98 v--fi~g  102 (129)
T 3ctg_A           98 V--YING  102 (129)
T ss_dssp             E--EETT
T ss_pred             E--EECC
Confidence            6  4455

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=92.54  E-value=0.34  Score=43.37  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       319 s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ...+.+.|+|...|+++++..++.....+.|..+.+.|.++|+.
T Consensus        95 ~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  138 (153)
T 2l5o_A           95 DKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDT  138 (153)
T ss_dssp             SCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHH
Confidence            35689999999999999996555444457888888889988876

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=91.96  E-value=0.033  Score=53.50  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=33.8

Q ss_pred             CCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecc
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELG  194 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~  194 (658)
                      .++.+|+|++.||+||+++.|.+   .++.+.+.+.+++..++..
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~   65 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVE   65 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECS
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecc
Confidence            47899999999999999999975   6888888655566655543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=91.78  E-value=0.34  Score=43.57  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=35.1

Q ss_pred             HhHHhhcC--CCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          320 SIWWNTFE--VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       320 ~~l~~~f~--V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ..+.+.|+  +...|+++++...+.....+.|..+.+.|.++|+.
T Consensus        93 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  137 (151)
T 3raz_A           93 RNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKL  137 (151)
T ss_dssp             HHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHH
T ss_pred             HHHHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence            56888999  88999999997666555557899999999999876

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=91.76  E-value=0.34  Score=41.92  Aligned_cols=43  Identities=16%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ..+.+.|++...|+++++...+.....+.|..+.+.|.+++++
T Consensus        94 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           94 GKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             hHHHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence            4689999999999999996555444457888888999988875

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=91.20  E-value=0.081  Score=46.19  Aligned_cols=62  Identities=10%  Similarity=0.181  Sum_probs=38.4

Q ss_pred             CccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc--c-hh-hhHHHhhCCCCcccceeeeeEEEE
Q 006171          147 PSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--I-RL-ATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       147 ~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e--~-~~-~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ++.+++++  ++.|.++||++|++..+.+++..      +.+..+|.+.  + .. ...|.+..|      ...+|++.+
T Consensus        11 ~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~------i~~~~~dvd~~~~~~~~~~~l~~~~g------~~tvP~vfi   76 (114)
T 3h8q_A           11 VGLIERSR--VVIFSKSYCPHSTRVKELFSSLG------VECNVLELDQVDDGARVQEVLSEITN------QKTVPNIFV   76 (114)
T ss_dssp             HHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEETTTSTTHHHHHHHHHHHHS------CCSSCEEEE
T ss_pred             HHHhccCC--EEEEEcCCCCcHHHHHHHHHHcC------CCcEEEEecCCCChHHHHHHHHHHhC------CCccCEEEE
Confidence            34444443  44599999999998877766531      3566666663  1 11 123556666      679999855

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=91.14  E-value=0.15  Score=50.05  Aligned_cols=41  Identities=7%  Similarity=-0.057  Sum_probs=32.6

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD  195 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e  195 (658)
                      ++|+.|.++||+.|..-.|.+.++.++++.. +.|..|.++.
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~   75 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNS   75 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            4455557999999999999999999999764 3777777763

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=91.12  E-value=0.62  Score=41.10  Aligned_cols=82  Identities=11%  Similarity=0.176  Sum_probs=48.8

Q ss_pred             CcEEEEEEe-C---CCCCCcHHHHHHHHhh-ccC-ceEEEEEecccc-----------------------cHhHHhhcCC
Q 006171          278 HKVKVIFFS-K---TGERASPFVRQISRNY-WAY-ASFAFVLWREEE-----------------------SSIWWNTFEV  328 (658)
Q Consensus       278 ~~v~vl~f~-~---~~~~~~~~~~~~A~~~-~~~-~~f~~v~~~~~~-----------------------s~~l~~~f~V  328 (658)
                      +++.+|.|. .   .|....+.+..++..| .+. +.+..|......                       ...+++.|+|
T Consensus        33 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  112 (148)
T 3fkf_A           33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAI  112 (148)
T ss_dssp             TSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTC
T ss_pred             CcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCC
Confidence            356666553 2   2222345555566666 443 556666543322                       3478999999


Q ss_pred             CCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          329 ESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       329 ~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ...|+++++..++.  +.+... +.+.|.++++.
T Consensus       113 ~~~P~~~lid~~G~--i~~~~~-~~~~l~~~l~~  143 (148)
T 3fkf_A          113 LTLPTNILLSPTGK--ILARDI-QGEALTGKLKE  143 (148)
T ss_dssp             CSSSEEEEECTTSB--EEEESC-CHHHHHHHHHH
T ss_pred             CCcCEEEEECCCCe--EEEecC-CHHHHHHHHHH
Confidence            99999999954432  223222 77778887765

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=90.99  E-value=0.42  Score=43.58  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC--ChHHHHHHHHh
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NNSRLSEVMEQ  362 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~--~~~~L~~fi~~  362 (658)
                      ..++++|+|.+.||++++..++.....+ |..  +.+.+.++++.
T Consensus       106 ~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~  149 (154)
T 2ju5_A          106 QELKAQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKS  149 (154)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHH
Confidence            4799999999999999995444443345 877  77888888875

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=90.30  E-value=0.5  Score=42.75  Aligned_cols=37  Identities=11%  Similarity=0.245  Sum_probs=28.8

Q ss_pred             CCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          327 EVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       327 ~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ++...|+++++..++.....+.|..+.+.|.++|+..
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~  149 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA  149 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            8999999999965554434567888899999998763

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=90.07  E-value=0.34  Score=43.52  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       319 s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      ...+.+.|+|...|+++++...+.....+.|..+.+.|.++|++..
T Consensus        98 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~  143 (154)
T 3ia1_A           98 PHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAG  143 (154)
T ss_dssp             HHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred             hHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence            4678999999999999998655544445788889999999998753

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=89.82  E-value=1.2  Score=39.27  Aligned_cols=71  Identities=14%  Similarity=0.123  Sum_probs=43.2

Q ss_pred             CcEEEEEEe----CCCCCCcHHHHHHHHhhccC-ceEEEEEecccccHh-------------------------HHhhcC
Q 006171          278 HKVKVIFFS----KTGERASPFVRQISRNYWAY-ASFAFVLWREEESSI-------------------------WWNTFE  327 (658)
Q Consensus       278 ~~v~vl~f~----~~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~-------------------------l~~~f~  327 (658)
                      +++.+|.|.    ..|....+.+..+...|.+. +.+..|...+  ..+                         +.+.|+
T Consensus        31 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           31 AKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIER--KDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCS--SSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecC--CHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            456666552    23333456666677777654 5566665432  223                         899999


Q ss_pred             CCCCCEEEEEeCCCCCeeeecCC
Q 006171          328 VESAPAIVFLKDPGVKPVVYYGS  350 (658)
Q Consensus       328 V~~~Ptlvlfk~~~~~p~~y~g~  350 (658)
                      |...|+++++..++.....+.|.
T Consensus       109 i~~~P~~~lid~~G~i~~~~~g~  131 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVIIAKRIGY  131 (148)
T ss_dssp             CCSSCEEEEECTTCBEEEESCCG
T ss_pred             cCCCCEEEEECCCCcEEEecCCH
Confidence            99999999995544333334554

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=89.50  E-value=0.73  Score=41.05  Aligned_cols=44  Identities=11%  Similarity=0.081  Sum_probs=31.7

Q ss_pred             hHHhhcCCCCCCEEEEEeCCCCCeeeecCCC--ChHHHHHHHHhhc
Q 006171          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NNSRLSEVMEQNK  364 (658)
Q Consensus       321 ~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~--~~~~L~~fi~~~~  364 (658)
                      .+.+.|+|...|+++++...+.....+.|..  +.+.|.++|++..
T Consensus        96 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A           96 QTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL  141 (152)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred             hhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence            5788899999999999965544333356643  4578999988753

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=88.73  E-value=0.27  Score=48.56  Aligned_cols=52  Identities=6%  Similarity=-0.071  Sum_probs=37.2

Q ss_pred             CCCcEEEEEeccC-CCCCC-----CChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVYSDG-SYLCG-----QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FYapw-C~~Ck-----~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+++++|.||+.| |+.|.     .-.|.+.+.   +.+ +.|..|+++........+++++
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~g-v~VvgIS~Ds~~~~~~f~~~~g  104 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPH-LKLIVITVDSPSSLARARHEHG  104 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTT-SEEEEEESSCHHHHHHHHHHHC
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCC-CEEEEEECCCHHHHHHHHHHcC
Confidence            3578999999888 99999     666666665   433 3777788875444556777776

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=88.60  E-value=0.83  Score=41.06  Aligned_cols=41  Identities=17%  Similarity=0.355  Sum_probs=33.5

Q ss_pred             HHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          322 WWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       322 l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      +.+.|+|...|+++++...+.....+.|..+.+.|.+.|+.
T Consensus       112 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  152 (160)
T 3lor_A          112 TMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGS  152 (160)
T ss_dssp             HHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHH
Confidence            88999999999999997655444456788888889888876

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=88.45  E-value=0.14  Score=47.64  Aligned_cols=39  Identities=18%  Similarity=0.134  Sum_probs=31.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGM  190 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~  190 (658)
                      +..+.+|+|+.-.|+||+++.|.+.++.+++...+++..
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~   58 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQK   58 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEE
Confidence            467899999999999999999999888887754444433

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=88.15  E-value=0.94  Score=40.67  Aligned_cols=42  Identities=10%  Similarity=0.271  Sum_probs=33.6

Q ss_pred             hHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       321 ~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      .+.+.|+|...|+++++...+.....+.|..+.+.|.+.|+.
T Consensus       108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  149 (158)
T 3eyt_A          108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIAT  149 (158)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHH
Confidence            589999999999999996555444446788888888888876

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=87.20  E-value=0.86  Score=41.15  Aligned_cols=44  Identities=11%  Similarity=0.207  Sum_probs=35.2

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ..+++.|+|...|+++++..++.....+.|..+.+.|.++++..
T Consensus       111 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~  154 (164)
T 2h30_A          111 GTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP  154 (164)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             hHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            56899999999999999955554434467888999999999863

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=86.65  E-value=3  Score=38.30  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=36.6

Q ss_pred             CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC-CCCeeeecCCCChHHHHHHHHh
Q 006171          306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       306 ~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~-~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ...+..+...+.+...+.++|++.++|+++++... +..-....| ++.+.+.++++.
T Consensus        77 ~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~  133 (153)
T 2dlx_A           77 HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTG  133 (153)
T ss_dssp             TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHH
T ss_pred             CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHH
Confidence            44455555433334678999999999999999765 333333455 787776665544

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=86.02  E-value=1.3  Score=40.02  Aligned_cols=47  Identities=6%  Similarity=0.138  Sum_probs=31.8

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC--ChHHHHHHHHhhccC
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NNSRLSEVMEQNKLQ  366 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~--~~~~L~~fi~~~~~~  366 (658)
                      ..+.+.|+|...|+++++...+.....+.|..  +..++.+.+..+..+
T Consensus       105 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          105 GQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             SHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC--
T ss_pred             HHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccc
Confidence            57999999999999888865554434466654  455666666665443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=86.01  E-value=1.6  Score=39.03  Aligned_cols=41  Identities=15%  Similarity=0.217  Sum_probs=27.9

Q ss_pred             cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       319 s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ...+++.|+|...|+++++..++..  ++.. .+.+.|.++++.
T Consensus        98 ~~~~~~~~~v~~~P~~~lid~~G~i--~~~~-~~~~~l~~~l~~  138 (152)
T 2lrn_A           98 VKDVLESYCIVGFPHIILVDPEGKI--VAKE-LRGDDLYNTVEK  138 (152)
T ss_dssp             HHHHHHHTTCCSSCEEEEECTTSEE--EEEC-CCTTHHHHHHHH
T ss_pred             hHHHHHHhCCCcCCeEEEECCCCeE--EEee-CCHHHHHHHHHH
Confidence            3578899999999999999544322  2221 345677777765

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=85.16  E-value=0.22  Score=44.65  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             CCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccc---h-hhhHHHhhCCCCcccceeeeeEE
Q 006171          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI---R-LATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~---~-~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      |++++..+.  ++.|..+||++|++....+++.    ... +.+..||.+..   . ....|.+..|      ...+|+|
T Consensus         7 ~~~ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~----~~~~v~~~~idid~~~d~~~~~~~l~~~~G------~~tVP~I   74 (127)
T 3l4n_A            7 YSLILDLSP--IIIFSKSTCSYSKGMKELLENE----YQFIPNYYIIELDKHGHGEELQEYIKLVTG------RGTVPNL   74 (127)
T ss_dssp             HHHHHTSCS--EEEEECTTCHHHHHHHHHHHHH----EEEESCCEEEEGGGSTTHHHHHHHHHHHHS------CCSSCEE
T ss_pred             HHHHHccCC--EEEEEcCCCccHHHHHHHHHHh----cccCCCcEEEEecCCCCHHHHHHHHHHHcC------CCCcceE
Confidence            445554444  7889999999998877665542    111 24556666532   1 1122444446      6689988


Q ss_pred             EE
Q 006171          221 VA  222 (658)
Q Consensus       221 ~~  222 (658)
                      .+
T Consensus        75 fI   76 (127)
T 3l4n_A           75 LV   76 (127)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=84.87  E-value=0.36  Score=45.48  Aligned_cols=41  Identities=17%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHH-HHHHHHhhcccceeeee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAW-KTIAALLEGIANTGMVE  192 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w-~~~A~~l~g~~~vg~Vd  192 (658)
                      +.++.+|+||+++|++|..+.+.. .++++.+.+.+++--+.
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~   57 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFH   57 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEE
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEe
Confidence            456789999999999999999988 88888776545444444

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=84.79  E-value=1.8  Score=40.04  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             CCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          327 EVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       327 ~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ++...|+++++...+.....+.|..+.+.|.++++.
T Consensus       143 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  178 (183)
T 3lwa_A          143 PASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALP  178 (183)
T ss_dssp             CTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHH
Confidence            678899888886555444457888888889888875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=84.56  E-value=2  Score=39.35  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=30.8

Q ss_pred             HhhcCCCCCCEEEEEeCCCCCeeeecCCCC-hHHHHHHHHh
Q 006171          323 WNTFEVESAPAIVFLKDPGVKPVVYYGSFN-NSRLSEVMEQ  362 (658)
Q Consensus       323 ~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~-~~~L~~fi~~  362 (658)
                      .++|+|.+.||++++...+.....+.|..+ .+.+.+++++
T Consensus       123 ~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~  163 (172)
T 3f9u_A          123 RVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQT  163 (172)
T ss_dssp             HHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHH
T ss_pred             HHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHH
Confidence            789999999999999544443334678887 8888888765

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=84.43  E-value=0.55  Score=44.50  Aligned_cols=55  Identities=9%  Similarity=0.023  Sum_probs=42.9

Q ss_pred             CCcEEEEEeccCCCCCCC-ChHHHHHHHHHhhcc-c-ceeeeecccchhhhHHHhhCC
Q 006171          153 SKPWLIQVYSDGSYLCGQ-FSGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~-l~P~w~~~A~~l~g~-~-~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      +.++|+.|.+.||+.|.. =.|.+.+.+.+++.. + .|..|.++......+.|++.+
T Consensus        48 k~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~  105 (176)
T 4f82_A           48 KRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLH  105 (176)
T ss_dssp             CEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhC
Confidence            335566667999999998 899999999999765 3 688888886555566888877

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=84.28  E-value=1.5  Score=39.11  Aligned_cols=42  Identities=10%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             hHHhhcCCCCCCEEEEEeCCCCCeeeecCCC--ChHHHHHHHHh
Q 006171          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NNSRLSEVMEQ  362 (658)
Q Consensus       321 ~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~--~~~~L~~fi~~  362 (658)
                      .+.+.|+|...|+++++...+.....+.|..  +...+.++|+.
T Consensus        97 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~  140 (154)
T 3kcm_A           97 RVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNN  140 (154)
T ss_dssp             HHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             HHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHH
Confidence            3888999999998888865544333356654  56688888875

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=83.77  E-value=1.8  Score=37.36  Aligned_cols=60  Identities=5%  Similarity=0.115  Sum_probs=42.3

Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi  360 (658)
                      .+.+..++.++  .+.|..+.+.+  .+++..+|++. .|+|++|.++  +. +..|.++.+.|.+|+
T Consensus        47 ~~~L~~l~~e~--~i~~~~vDId~--d~~l~~~ygv~-VP~l~~~~dG--~~-v~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           47 IASLRVLQKKS--WFELEVINIDG--NEHLTRLYNDR-VPVLFAVNED--KE-LCHYFLDSDVIGAYL  106 (107)
T ss_dssp             HHHHHHHHHHS--CCCCEEEETTT--CHHHHHHSTTS-CSEEEETTTT--EE-EECSSCCCHHHHHHH
T ss_pred             HHHHHHHHHhc--CCeEEEEECCC--CHHHHHHhCCC-CceEEEEECC--EE-EEecCCCHHHHHHHh
Confidence            34445555544  36677776543  56799999997 9999999865  33 356888988898886

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=83.67  E-value=0.71  Score=42.93  Aligned_cols=33  Identities=9%  Similarity=0.325  Sum_probs=28.0

Q ss_pred             CCCcEEEEEeccCCC-CCCCChHHHHHHHHHhhc
Q 006171          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEG  184 (658)
Q Consensus       152 ~~~~~lV~FYapwC~-~Ck~l~P~w~~~A~~l~g  184 (658)
                      .+++++|.|+.+||+ .|....+...++.+.++.
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~   64 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKE   64 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhc
Confidence            578999999999996 699888888888777753

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=83.48  E-value=2.1  Score=38.67  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             hHHhhcCCCCCCEEEEEeCCCCCeeeecCCC-ChHHHHHHHHh
Q 006171          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVMEQ  362 (658)
Q Consensus       321 ~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~-~~~~L~~fi~~  362 (658)
                      .+.+.|+|...|+++++...+..  .+.|.. +.+.|.+++++
T Consensus       121 ~~~~~~~v~~~P~~~lid~~G~i--~~~g~~~~~~~l~~~l~~  161 (165)
T 3ha9_A          121 SLVEKFNVRSIDYIVIMDKSSNV--LYAGTTPSLGELESVIKS  161 (165)
T ss_dssp             HHHHHTTCCSSSEEEEEETTCCE--EEEEESCCHHHHHHHHHH
T ss_pred             HHHHHhCCCCceEEEEEcCCCcE--EEeCCCCCHHHHHHHHHH
Confidence            68899999999999999655432  337777 78888888875

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=82.76  E-value=1.7  Score=43.96  Aligned_cols=83  Identities=12%  Similarity=0.060  Sum_probs=48.9

Q ss_pred             cEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeee--ccc--------chhhhHHHhhCCCCcccceeee--eE
Q 006171          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVE--LGD--------IRLATHLAERKPIGQIFFRRGL--PS  219 (658)
Q Consensus       155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vd--c~e--------~~~~~~Lc~k~~i~k~f~V~~y--PT  219 (658)
                      ..+..|.+++|++|.+.....++++.+..-.   ..+..+|  ...        ......+.+++|      ++++  |+
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G------~~tVyTPq  117 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALG------RNGVYTPQ  117 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTT------CSCCCSSE
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhC------CCcccCCE
Confidence            5667788999999999888888887653210   0111222  000        011223677777      7788  98


Q ss_pred             EEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       220 l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |++  +|..      . -|..+.+.|.+.+.+.
T Consensus       118 I~I--ng~~------~-v~G~d~~~l~~~l~~~  141 (270)
T 2axo_A          118 AIL--NGRD------H-VKGADVRGIYDRLDAF  141 (270)
T ss_dssp             EEE--TTTE------E-EETTCHHHHHHHHHHH
T ss_pred             EEE--CCEE------e-ecCCCHHHHHHHHHHh
Confidence            766  4431      1 2334567777777554

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=81.87  E-value=3.3  Score=36.73  Aligned_cols=39  Identities=15%  Similarity=0.281  Sum_probs=27.1

Q ss_pred             hHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       321 ~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      .+.+.|+|...|+++++...+.  +.+.. .+.+.|.+.++.
T Consensus       107 ~~~~~~~v~~~P~~~lid~~G~--i~~~~-~~~~~l~~~l~~  145 (150)
T 3fw2_A          107 EVAKQYSIYKIPANILLSSDGK--ILAKN-LRGEELKKKIEN  145 (150)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSB--EEEES-CCHHHHHHHHHH
T ss_pred             HHHHHcCCCccCeEEEECCCCE--EEEcc-CCHHHHHHHHHH
Confidence            6899999999999999955443  22322 266677776654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=81.71  E-value=0.71  Score=45.36  Aligned_cols=57  Identities=12%  Similarity=0.146  Sum_probs=39.6

Q ss_pred             CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ..-++.|..+||++|++....+++.     + +.+-.+|.+++.....|.+.++      ..++|+|.+
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~-----~-i~~~~~~i~~~~~~~~l~~~~g------~~~vP~~~~  225 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK-----G-LSFEEIILGHDATIVSVRAVSG------RTTVPQVFI  225 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH-----T-CCCEEEETTTTCCHHHHHHHTC------CSSSCEEEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc-----C-CceEEEECCCchHHHHHHHHhC------CCCcCEEEE
Confidence            4457788899999999877665542     2 3566677764433355777787      779999853

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=80.77  E-value=3.9  Score=34.77  Aligned_cols=37  Identities=14%  Similarity=0.138  Sum_probs=30.5

Q ss_pred             cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHH
Q 006171          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       319 s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~  361 (658)
                      ..+++++|+|.++||+++  ++  +  .|.|..+.+.|.+|+.
T Consensus        55 ~~~l~~~~~V~~~PT~~i--~G--~--~~~G~~~~~~l~~~~~   91 (106)
T 3kp8_A           55 QAQECTEAGITSYPTWII--NG--R--TYTGVRSLEALAVASG   91 (106)
T ss_dssp             CCHHHHHTTCCSSSEEEE--TT--E--EEESCCCHHHHHHHHT
T ss_pred             hHHHHHHcCCeEeCEEEE--CC--E--EecCCCCHHHHHHHhC
Confidence            467999999999999777  33  2  3889999999999874

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=80.71  E-value=0.65  Score=42.94  Aligned_cols=84  Identities=14%  Similarity=0.112  Sum_probs=45.1

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCC--CCCCEEEEEeCCCCCeeeecCC-
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEV--ESAPAIVFLKDPGVKPVVYYGS-  350 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V--~~~Ptlvlfk~~~~~p~~y~g~-  350 (658)
                      +++.+|.|. +-|   ....|.+..++..+...+.|..|...... ..++..|++  ..+||+++|..++.....+.|. 
T Consensus        46 ~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~-~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~  124 (164)
T 1sen_A           46 GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE-EPKDEDFSPDGGYIPRILFLDPSGKVHPEIINEN  124 (164)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGG-SCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTT
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCc-hHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCC
Confidence            345566554 222   11233333333333334567777654321 227788888  5599999994333222224453 


Q ss_pred             ---------CChHHHHHHHHh
Q 006171          351 ---------FNNSRLSEVMEQ  362 (658)
Q Consensus       351 ---------~~~~~L~~fi~~  362 (658)
                               .+.+.|.++|+.
T Consensus       125 ~~~~~~~~~~~~~~l~~~l~~  145 (164)
T 1sen_A          125 GNPSYKYFYVSAEQVVQGMKE  145 (164)
T ss_dssp             SCTTSTTCCCSHHHHHHHHHH
T ss_pred             CccchhcccCCHHHHHHHHHH
Confidence                     567777777765

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=80.59  E-value=1.5  Score=39.84  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ..+++.|+|...|+.+++..++.....+.|..+.+.|.++++.
T Consensus       115 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  157 (168)
T 2b1k_A          115 GMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP  157 (168)
T ss_dssp             CHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHH
T ss_pred             hHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            5688999999999777765444333346788888888777654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=80.58  E-value=6.4  Score=34.75  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=32.0

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ..+++.|+|...|+++++..++.....+.|..+.+.|.++++.
T Consensus       107 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~  149 (156)
T 1kng_A          107 GRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLP  149 (156)
T ss_dssp             SHHHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHH
T ss_pred             hHHHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHH
Confidence            4688999999999877775444333346888888888887765

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=80.31  E-value=0.58  Score=42.32  Aligned_cols=58  Identities=16%  Similarity=0.084  Sum_probs=35.3

Q ss_pred             cEEEEEec----cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhh-hHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          155 PWLIQVYS----DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       155 ~~lV~FYa----pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~-~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      .+.|..++    |||++|++....+++.      .+.+..+|.++++.. ..|.+..|      ...+|+|.  .+|
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~------gv~y~~vdI~~d~~~~~~L~~~~G------~~tvP~Vf--I~G   98 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAAC------GERFAYVDILQNPDIRAELPKYAN------WPTFPQLW--VDG   98 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTT------CSCCEEEEGGGCHHHHHHHHHHHT------CCSSCEEE--ETT
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHc------CCceEEEECCCCHHHHHHHHHHHC------CCCcCEEE--ECC
Confidence            45554444    9999998776655432      136778888754332 23444445      66889864  454

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	658
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-08
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	7e-08
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-07
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-07
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	3e-04
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	3e-04
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-04
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	8e-04

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 30  VLPRSFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELL 87
           VL R+      + L +         ++++AY++ S   +  ++  S A   ++   +   
Sbjct: 4   VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHP-DKGGSHALMQELNSLWGTF 62

Query: 88  TDPLWKRNYDVYGIDEQ 104
              ++    ++ G   Q
Sbjct: 63  KTEVYNLRMNLGGTGFQ 79

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (115), Expect = 7e-08
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 31  LPRSFPPSHYDALGIKPYSSVEQVKEAY---------EKFSSKWNSGEEIPSTADFLKIQ 81
           L ++     Y  LG  P +++  +K+ Y         +K S+   +G        F++I 
Sbjct: 10  LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEID 69

Query: 82  YAYELLTDPLWKRNYDVYG 100
            A+++L +   K+ YD+  
Sbjct: 70  QAWKILGNEETKKKYDLQR 88

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y  LG+   +S E++K AY + + +++  +     A+  F +I  AY++L+DP  +  +
Sbjct: 5   YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64

Query: 97  DVYG 100
           D YG
Sbjct: 65  DRYG 68

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   +   ++++AY++ + K+    N G++    A F +I+ AYE+LTD   + 
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-EAKFKEIKEAYEVLTDSQKRA 63

Query: 95  NYDVYG 100
            YD YG
Sbjct: 64  AYDQYG 69

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 140 VVTSEDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL 198
           VV ++++  I  D  K  LI+ Y+     C   +  ++ + AL         V +     
Sbjct: 6   VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI----- 60

Query: 199 ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW 248
                +          +G P++  +P G K       + G  +V+ +  +
Sbjct: 61  --AKVDATANDVPDEIQGFPTIKLYPAGAKGQ--PVTYSGSRTVEDLIKF 106

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 38 SHYDALGIKPYSSVEQVKEAYE----KFSSKWNSG--EEIPSTADFLKIQYAYELLTDPL 91
          + +  +G+    + EQVK+ Y            +G   E  +   F+++  A+    +  
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 92 WKRNY 96
           K  Y
Sbjct: 94 QKPLY 98

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 39  HYDALGIKP--YSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
             D LG++   + ++  +++AY K   +++  +         K+   Y+ + D +   + 
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE-KMKKMNTLYKKMEDGVKYAHQ 68

Query: 97  DVYG 100
             +G
Sbjct: 69  PDFG 72

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 39 HYDALGIKPYSSV--EQVKEAYEKFSSKWNS--------GEEIPSTADFLKIQYAYELLT 88
          ++   G+     +  + +   ++    +++          E++ +      I  A++ L 
Sbjct: 3  YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

Query: 89 DPLWKRNYD 97
           PL +  Y 
Sbjct: 63 HPLMRAEYL 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	658
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.84
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.83
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.81
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.81
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.81
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.81
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.8
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.79
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.78
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.78
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.78
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.78
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.77
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.68
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.66
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.65
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.64
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.61
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.6
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.59
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.59
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.59
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.58
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.57
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.57
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.57
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.56
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.56
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.55
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.53
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.5
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.47
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.39
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.39
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.38
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.37
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.33
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.87
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.57
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.55
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.54
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.53
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.33
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.33
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.32
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.28
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.28
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.27
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.27
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.24
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.18
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.13
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.07
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	97.98
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	97.93
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.89
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.89
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.86
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	97.84
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.76
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.76
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.75
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.72
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.72
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.68
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.68
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	97.67
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	97.63
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.62
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.53
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.43
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.32
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.3
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.29
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.28
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.22
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.21
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.08
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.07
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.04
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.01
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	96.95
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	96.91
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.75
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.71
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	96.38
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	96.21
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	95.93
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	95.68
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	95.64
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	95.56
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	95.44
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	95.22
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	94.93
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	94.85
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	94.76
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.93
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	93.84
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	93.46
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	93.31
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.21
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.03
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	92.71
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	91.88
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	91.82
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	91.56
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	90.86
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	90.85
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	90.34
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	89.75
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	89.27
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	89.04
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	88.63
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	88.62
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	86.98
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	86.44
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	86.27
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	85.77
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	85.42
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	85.39
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	83.62
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	83.6
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	83.05
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	82.88
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	81.81

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=5.1e-22  Score=177.70  Aligned_cols=109  Identities=14%  Similarity=0.211  Sum_probs=96.8

Q ss_pred             CCcceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-ccceeeeecccchhhhHHHhhCCCCcc
Q 006171          133 HSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       133 ~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      +.++.|+.||.++|++.|.+++.|||+||+|||+||+++.|+|+++|+.+.+ .+.|++|||++++   .||++++    
T Consensus         7 ~~~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~---~l~~~~~----   79 (119)
T d2b5ea4           7 PEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ---DLCMEHN----   79 (119)
T ss_dssp             CTTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH---HHHHHTT----
T ss_pred             CCCCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchH---HHHHHhc----
Confidence            3456789999999999998899999999999999999999999999999865 4699999999554   5999999    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.+||||++|++|..  .....|.|.++.++|++|+.++
T Consensus        80 --v~~~Pti~~f~~g~~--~~~~~y~g~~~~~~l~~fi~k~  116 (119)
T d2b5ea4          80 --IPGFPSLKIFKNSDV--NNSIDYEGPRTAEAIVQFMIKQ  116 (119)
T ss_dssp             --CCSSSEEEEEETTCT--TCEEECCSCCSHHHHHHHHHHH
T ss_pred             --cccCCeEEEEECCEE--eeeEEecCCCCHHHHHHHHHHh
Confidence              889999999998865  3456799999999999999987

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=1.6e-21  Score=175.63  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             cCCCCCCCCCCcceEEEecCCCCCccccCCCcEEEEEeccCCCCC------CCChHHHHHHHHHhhcc-cceeeeecccc
Q 006171          124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC------GQFSGAWKTIAALLEGI-ANTGMVELGDI  196 (658)
Q Consensus       124 ~fgf~~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C------k~l~P~w~~~A~~l~g~-~~vg~Vdc~e~  196 (658)
                      +||-|++.    ..|++||.+||+++|.+++.|+|+||||||+||      +.+++.++++|+.+++. +.||+|||+++
T Consensus         3 ~~p~~d~~----~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~   78 (124)
T d1a8ya1           3 DFPEYDGV----DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD   78 (124)
T ss_dssp             CCCCCCCC----CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTS
T ss_pred             CCCccCCC----CccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecc
Confidence            35556554    257999999999999878899999999999985      33444445555555554 58999999955


Q ss_pred             hhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171          197 RLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (658)
Q Consensus       197 ~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v  253 (658)
                      +   .||++++      |++||||++|.+|..     .+|.|.|++++|++|+.+.+
T Consensus        79 ~---~l~~~~~------I~~yPTi~~f~~g~~-----~~y~G~r~~~~l~~fi~~~l  121 (124)
T d1a8ya1          79 A---AVAKKLG------LTEEDSIYVFKEDEV-----IEYDGEFSADTLVEFLLDVL  121 (124)
T ss_dssp             H---HHHHTTT------CCSTTCEEEEESSSE-----EECCSCCSHHHHHHHHHHHH
T ss_pred             c---chhhccc------cccCCcEEEeccCcc-----EEeeCCCCHHHHHHHHHHhc
Confidence            4   5999999      889999999998854     78999999999999999873

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.81  E-value=5.4e-21  Score=169.64  Aligned_cols=105  Identities=19%  Similarity=0.362  Sum_probs=87.6

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc--ceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA--NTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~--~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|..||.+||++.| +++++|||.||||||+||+++.|.|+++|+.+....  .+..+++.+...   +|.+++      
T Consensus         3 ~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~------   73 (116)
T d2djja1           3 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA---NDVPDE------   73 (116)
T ss_dssp             SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT---SCCSSC------
T ss_pred             CcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccch---hhhccc------
Confidence            57899999999988 788999999999999999999999999999997653  345555553222   566666      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |++||||++|++|..  .....|.|.|+.++|++|+.++
T Consensus        74 v~~~Pti~~f~~g~~--~~~~~~~g~~~~~~l~~fi~~~  110 (116)
T d2djja1          74 IQGFPTIKLYPAGAK--GQPVTYSGSRTVEDLIKFIAEN  110 (116)
T ss_dssp             CSSSSEEEEECSSCT--TSCCCCCCCSCHHHHHHHHHHT
T ss_pred             ccCCCEEEEEECCcc--CceEEecCCCCHHHHHHHHHHc
Confidence            889999999998764  3456899999999999999886

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6e-21  Score=170.56  Aligned_cols=105  Identities=17%  Similarity=0.304  Sum_probs=93.9

Q ss_pred             eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|+.||.+||++++++++++||.||||||++|+++.|.|+++++.+++.   +.++.|||++++   .+|++++      
T Consensus         8 ~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------   78 (120)
T d1meka_           8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES---DLAQQYG------   78 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC---SSHHHHT------
T ss_pred             CeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch---hHHHHhC------
Confidence            4899999999998888899999999999999999999999999999653   589999999654   4899998      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |++||||++|++|..  .....|.|.++.++|++|++++
T Consensus        79 i~~~Pt~~~~~~G~~--~~~~~~~g~~~~~~l~~fi~~~  115 (120)
T d1meka_          79 VRGYPTIKFFRNGDT--ASPKEYTAGREADDIVNWLKKR  115 (120)
T ss_dssp             CCSSSEEEEEESSCS--SSCEECCCCSSHHHHHHHHHTT
T ss_pred             CccCCeEEEEECCeE--eeeEEecCCCCHHHHHHHHHHh
Confidence            889999999998865  3456799999999999999988

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=8.9e-21  Score=170.34  Aligned_cols=108  Identities=10%  Similarity=0.095  Sum_probs=90.8

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccc--hhhhHHHhhCCCCccc
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDI--RLATHLAERKPIGQIF  212 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~--~~~~~Lc~k~~i~k~f  212 (658)
                      +++||..||+++|.+++.+||+||||||+||+  .|+|+++|+.+..   .+.+|+|||++.  .....||+++++.   
T Consensus         4 ~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~---   78 (122)
T d2c0ga2           4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD---   78 (122)
T ss_dssp             CEECCTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC---
T ss_pred             eEEcChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcc---
Confidence            58999999999998889999999999999999  5999999998854   348999999742  2335699999854   


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                       +++||||++|++|... .....|.|+|++++|++|+.++
T Consensus        79 -~~~~PTi~~f~~g~~~-~~~~~~~g~rt~~~l~~fv~~~  116 (122)
T d2c0ga2          79 -DKNFPSIFLFKGNADE-YVQLPSHVDVTLDNLKAFVSAN  116 (122)
T ss_dssp             -TTSCCEEEEESSSSSS-EEECCTTSCCCHHHHHHHHHHH
T ss_pred             -cCCCCcEEEEeCCccc-ccccccCCCCCHHHHHHHHHHh
Confidence             5789999999988642 1235789999999999999988

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.81  E-value=6.9e-21  Score=167.10  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=93.9

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .|++||++||++.| +++++++|.||||||+||+++.|.|++++.++.+.+.+++|||++++   .+|++++      |+
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~------I~   73 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP---TTVKKYK------VE   73 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCH---HHHHHTT------CC
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccH---HHHHHhc------cc
Confidence            48999999999876 78899999999999999999999999999999998999999999655   4999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|.+|..    ...|.|.++.+.|.+|+.+.
T Consensus        74 ~~Pt~~~~~~g~~----v~~~~G~~~~~~l~~~i~~~  106 (108)
T d1thxa_          74 GVPALRLVKGEQI----LDSTEGVISKDKLLSFLDTH  106 (108)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCEE----EEEEeCCCCHHHHHHHHHHh
Confidence            9999999998854    56889999999999999886

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.80  E-value=1.1e-20  Score=164.67  Aligned_cols=102  Identities=13%  Similarity=0.207  Sum_probs=93.3

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |.+||++||++.| +++++++|.||||||++|+++.|.|+++++.+.+...++.|||++++   .+|++++      |++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~---~l~~~~~------V~~   71 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP---GIATQYN------IRS   71 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccch---hhhhhcc------eee
Confidence            5789999999988 77899999999999999999999999999999998899999999655   5999999      899


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        72 ~Pt~~~~~~G~~----v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          72 IPTVLFFKNGER----KESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             SSEEEEEETTEE----EEEEEECCCHHHHHHHHHHH
T ss_pred             eeEEEEEEcCeE----EEEEeCCCCHHHHHHHHHHh
Confidence            999999998854    57889999999999999876

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.4e-20  Score=163.47  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=94.1

Q ss_pred             eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      +|++||.++|++.| +++++++|.||||||+||+.+.|.|.++|.++.+.+.++.|||++++   .+|++++      |+
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~---~l~~~~~------v~   73 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYG------IR   73 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT---THHHHTT------CC
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchh---hHHHHhC------CC
Confidence            58999999999876 78899999999999999999999999999999888899999999665   4999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus        74 ~~PT~~~~~~G~~----v~~~~G~~~~~~l~~~i~~~  106 (108)
T d2trxa_          74 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             cEEEEEEEECCEE----EEEEeCCCCHHHHHHHHHHh
Confidence            9999999998854    56799999999999999886

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.7e-20  Score=171.05  Aligned_cols=105  Identities=15%  Similarity=0.253  Sum_probs=89.6

Q ss_pred             cceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc---ceeeeecccchhhhHHHhhCCCCc
Q 006171          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA---NTGMVELGDIRLATHLAERKPIGQ  210 (658)
Q Consensus       135 ~~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~---~vg~Vdc~e~~~~~~Lc~k~~i~k  210 (658)
                      ++.|..||.+||++.| +.+++|||.||||||+||+++.|.|+++|+.+.+..   .++.+||+  .   ++|++++   
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~---~~~~~~~---   82 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--E---NDVRGVV---   82 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--G---CCCSSCC---
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--c---hhccccc---
Confidence            4569999999999999 678899999999999999999999999999987643   45555554  2   3788888   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |++||||++|++|..  .....|.|.++.++|++|+.+.
T Consensus        83 ---v~~~Ptl~~f~~g~~--~~~~~y~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          83 ---IEGYPTIVLYPGGKK--SESVVYQGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             ---CSSSSEEEEECCTTS--CCCCBCCSCCCHHHHHHHHHHH
T ss_pred             ---cccCCeEEEEECCEE--cceeEeCCCCCHHHHHHHHHHc
Confidence               889999999998865  2456799999999999999887

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=5.1e-20  Score=150.73  Aligned_cols=68  Identities=28%  Similarity=0.536  Sum_probs=62.8

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~  103 (658)
                      ..|||+||||+++||.++||+|||+|+++||||+++.   +.+.|.+|++||++|+||.+|+.||+||..+
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            4799999999999999999999999999999999763   4567999999999999999999999999765

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.78  E-value=3.5e-20  Score=161.68  Aligned_cols=101  Identities=13%  Similarity=0.217  Sum_probs=92.6

Q ss_pred             EEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeee
Q 006171          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (658)
Q Consensus       139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yP  218 (658)
                      +.||++||++.++++++++|.||||||++|+.+.|.|++++.++.+.+.+++|||++++   .+|++++      |+++|
T Consensus         3 i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~------V~~~P   73 (105)
T d1nw2a_           3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---ETTSQFG------IMSIP   73 (105)
T ss_dssp             EEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH---HHHHHTT------CCBSS
T ss_pred             EEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCc---ccHHHCC------cceee
Confidence            78999999999998999999999999999999999999999999998999999999554   5999999      88999


Q ss_pred             EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++|++|..    ..++.|.++.+.|.+++.+.
T Consensus        74 t~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          74 TLILFKGGEP----VKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             EEEEEETTEE----EEEEESCCCHHHHHHHTTTT
T ss_pred             EEEEEECCEE----EEEEECCCCHHHHHHHHHHH
Confidence            9999998864    56889999999999998665

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.8e-20  Score=167.06  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=89.2

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-------cceeeeecccchhhhHHHhhCCCCc
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-------ANTGMVELGDIRLATHLAERKPIGQ  210 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-------~~vg~Vdc~e~~~~~~Lc~k~~i~k  210 (658)
                      +++||.+||+++|.+++.+||+||+|||.+|+.  |+|+++|..+++.       +.++.|||+++   ..||+++++. 
T Consensus         6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n---~~l~~~~~~~-   79 (122)
T d1g7ea_           6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLN---MELSEKYKLD-   79 (122)
T ss_dssp             SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHH---HHHHHHHTCS-
T ss_pred             eEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecccccc---HHHHHhhccc-
Confidence            588999999999988999999999999999975  9999999999764       34677788844   4599987655 


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |++||||++|++|..  ..+.+|+|.|++++|++|++++
T Consensus        80 ---I~~yPTi~~f~~G~~--~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          80 ---KESYPVFYLFRDGDF--ENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             ---SSSCEEEEEEESSCC--CCCEEEESCCCHHHHHHHHHTT
T ss_pred             ---ccCCCeEEEEecCcc--cCceecCCCCCHHHHHHHHHhc
Confidence               889999999999865  2457899999999999999886

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.77  E-value=3.7e-20  Score=162.05  Aligned_cols=102  Identities=15%  Similarity=0.221  Sum_probs=92.8

Q ss_pred             EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      +..+|++||++.| ++++++||.||||||++|+++.|.|++++.++.+...++.|||++++   .+|++++      |++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~------V~~   73 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP---NVASEYG------IRS   73 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHHT------CCS
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccch---hHHHHhc------ccc
Confidence            4678999999988 67899999999999999999999999999999998999999999554   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|.+|..    ..+|.|.++.+.|.+|+.+.
T Consensus        74 ~Pt~~~~~~G~~----v~~~~G~~~~~~l~~~i~~~  105 (107)
T d1dbya_          74 IPTIMVFKGGKK----CETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             SCEEEEESSSSE----EEEEESCCCHHHHHHHHHHH
T ss_pred             eEEEEEEECCeE----EEEEeCCCCHHHHHHHHHHh
Confidence            999999998864    57889999999999999886

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.9e-19  Score=146.28  Aligned_cols=69  Identities=26%  Similarity=0.475  Sum_probs=64.3

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      .+|||+||||+++|+.++|++||+++++++|||+++  .+.++|..|++||++|+||.+|+.||+||.++.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            469999999999999999999999999999999875  466789999999999999999999999998874

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.68  E-value=9.8e-19  Score=154.89  Aligned_cols=68  Identities=15%  Similarity=0.184  Sum_probs=62.3

Q ss_pred             ccCcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171           36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~  104 (658)
                      ..|+|+||||+++|  +.++||+|||+||++||||+++ +.++|++|++||++|+||.+|+.||.+|....
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~-~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~   76 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-DEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCC-TTTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHhCCHHHHHHHhccCCCCc
Confidence            45899999999999  7889999999999999999985 56789999999999999999999999987653

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.66  E-value=9.1e-18  Score=148.13  Aligned_cols=102  Identities=16%  Similarity=0.249  Sum_probs=89.2

Q ss_pred             eEEEe-cCCCCCcccc----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcc
Q 006171          137 AFNVV-TSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       137 ~V~~L-t~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      .|..+ |.++|++.+.    ++++++|.|||+||++|+.+.|.|+++++++.+.+.++.|||++++   .+|++++    
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~----   75 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA---AVAEAAG----   75 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH---HHHHHHT----
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccc---ccccccc----
Confidence            46777 5688988883    5789999999999999999999999999999988899999999654   5999999    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |+++||+++|++|..    ...+.| .+.++|.+|+.++
T Consensus        76 --v~~~Pt~~~~~~G~~----v~~~~G-~~~~~l~~~i~k~  109 (112)
T d1ep7a_          76 --ITAMPTFHVYKDGVK----ADDLVG-ASQDKLKALVAKH  109 (112)
T ss_dssp             --CCBSSEEEEEETTEE----EEEEES-CCHHHHHHHHHHH
T ss_pred             --ccCCCEEEEEECCEE----EEEEeC-cCHHHHHHHHHHH
Confidence              899999999998864    466788 5899999999887

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.8e-17  Score=141.35  Aligned_cols=67  Identities=21%  Similarity=0.466  Sum_probs=60.4

Q ss_pred             CCccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---------hHHHHHHHHHHHHHcCChhhhhcccccC
Q 006171           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---------STADFLKIQYAYELLTDPLWKRNYDVYG  100 (658)
Q Consensus        34 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---------~~~~f~~i~~Aye~L~d~~~R~~YD~~g  100 (658)
                      +...|||+||||+++|+.++||+||++|+++||||+++.         +.+.|+.|++||++|+||.+|+.||..+
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            446899999999999999999999999999999999763         3456999999999999999999999654

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.64  E-value=3.5e-17  Score=144.37  Aligned_cols=101  Identities=14%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             eEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc-chhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD-IRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e-~~~~~~Lc~k~~i~k~f~  213 (658)
                      .|.++|.++|.+.+.  .+++++|.||++||++|+.+.|.|+++++++.+ +.+.+|||++ ++   .||++++      
T Consensus         7 ~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~---~l~~~~~------   76 (112)
T d1f9ma_           7 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENK---TLAKELG------   76 (112)
T ss_dssp             SEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTH---HHHHHHC------
T ss_pred             eeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccch---hhHhhee------
Confidence            589999999999983  468999999999999999999999999999876 4799999974 33   5999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|++|..    ...|.|. +.+.+.+++.++
T Consensus        77 V~~~Pt~~~~k~G~~----v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          77 IRVVPTFKILKENSV----VGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             CSSSSEEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             eccCCEEEEEECCEE----EEEEeCC-CHHHHHHHHHHc
Confidence            889999999998864    5678886 678999998765

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=6.8e-17  Score=142.03  Aligned_cols=102  Identities=14%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             eEEEecC-CCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171          137 AFNVVTS-EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~  213 (658)
                      -|.++++ ++|+..+  .++++++|.||||||++|+.+.|.|+++++++.+.+.+..|||++++   .+|++++      
T Consensus         6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~---~l~~~~~------   76 (111)
T d1xwaa_           6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE---DIAMEYN------   76 (111)
T ss_dssp             CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH---HHHHHTT------
T ss_pred             eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCc---chhhcCC------
Confidence            3566654 7798888  46789999999999999999999999999999988899999999655   4999999      


Q ss_pred             eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      |+++||+++|++|..    ..+|.|. +.+.|.+|++++
T Consensus        77 V~~~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          77 ISSMPTFVFLKNGVK----VEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             CCSSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHT
T ss_pred             CccccEEEEEECCEE----EEEEeCC-CHHHHHHHHHhc
Confidence            889999999998864    5678886 467899998875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=3.4e-16  Score=130.61  Aligned_cols=83  Identities=13%  Similarity=0.064  Sum_probs=73.3

Q ss_pred             CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCC
Q 006171          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (658)
Q Consensus       153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~  232 (658)
                      +++.++.||||||+||+.+.|.|+++++.+.+...+..+||++++   ++|++|+      |+++||++++.+|      
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~---~la~~~~------V~~~Pt~~i~~~g------   66 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP---QKAMEYG------IMAVPTIVINGDV------   66 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC---CTTTSTT------TCCSSEEEETTEE------
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccc---cccccCC------ceEeeEEEEECCc------
Confidence            357789999999999999999999999999888899999999665   4899998      8899999998765      


Q ss_pred             cccccCCCCHhHHHHHHHHh
Q 006171          233 MTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       233 ~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        .|.|.++.++|.+|+.+.
T Consensus        67 --~~~G~~~~~~l~~~i~~~   84 (85)
T d1fo5a_          67 --EFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             --ECCSSSSSHHHHHHHHHH
T ss_pred             --EEECCCCHHHHHHHHHhc
Confidence              357999999999999876

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=1e-16  Score=141.76  Aligned_cols=102  Identities=12%  Similarity=0.148  Sum_probs=86.3

Q ss_pred             ceEEEe-cCCCCCccc----cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCc
Q 006171          136 HAFNVV-TSEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ  210 (658)
Q Consensus       136 ~~V~~L-t~~nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k  210 (658)
                      +.|+.+ |.++|++.+    ++++++||.||||||++|+.+.|.|+++++.+++ +.++.||+++++   .+|++++   
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~---~l~~~~~---   78 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELK---SVASDWA---   78 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSH---HHHHHTT---
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeece---eeccccc---
Confidence            355666 667788776    3688999999999999999999999999998865 579999999654   5999999   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |+++||+++|++|..    ...+.|. +.+.|.+|+.++
T Consensus        79 ---V~~~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~i~k~  112 (114)
T d1xfla_          79 ---IQAMPTFMFLKEGKI----LDKVVGA-KKDELQSTIAKH  112 (114)
T ss_dssp             ---CCSSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             ---eeeeEEEEEEECCEE----EEEEeCc-CHHHHHHHHHHh
Confidence               899999999998864    4667885 689999999887

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.59  E-value=8.2e-17  Score=139.57  Aligned_cols=97  Identities=10%  Similarity=0.261  Sum_probs=83.9

Q ss_pred             ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      -+.++|+++++++++++|.||||||++|+.+.|.|+++++++.+ ..+++|||++++   .+|++++      |+++||+
T Consensus         6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~---~~~~~~~------V~~~Pt~   75 (103)
T d1syra_           6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVS---EVTEKEN------ITSMPTF   75 (103)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTH---HHHHHTT------CCSSSEE
T ss_pred             CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCc---ceeeeee------eecceEE
Confidence            35577988888889999999999999999999999999999864 479999999554   5999999      8999999


Q ss_pred             EEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++|++|..    ..+|.|. +.+.|.+|+.++
T Consensus        76 i~~k~G~~----v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          76 KVYKNGSS----VDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEETTEE----EEEEESC-CHHHHHHHHHTT
T ss_pred             EEEECCEE----EEEEeCc-CHHHHHHHHHhh
Confidence            99998864    5678884 688999998764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.59  E-value=1e-16  Score=141.49  Aligned_cols=101  Identities=11%  Similarity=0.162  Sum_probs=83.0

Q ss_pred             eEEEecC-CCCCc----cccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcc
Q 006171          137 AFNVVTS-EDFPS----IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (658)
Q Consensus       137 ~V~~Lt~-~nF~~----~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~  211 (658)
                      +|+.++. ++|++    .+.++++++|.|||+||++|+.+.|.|+++++++.+ ..++.|||++++   .+|++++    
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~---~l~~~~~----   76 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELK---AVAEEWN----   76 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCH---HHHHHHH----
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccc---cccccCe----
Confidence            4566654 33444    345789999999999999999999999999998865 589999999655   5999998    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |+++||+++|++|..    ...+.| .+.++|.+|+.++
T Consensus        77 --I~~~Pt~~~~k~G~~----v~~~~G-~~~~~l~~~i~k~  110 (113)
T d1ti3a_          77 --VEAMPTFIFLKDGKL----VDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             --CSSTTEEEEEETTEE----EEEEEC-CCTTHHHHHHHHH
T ss_pred             --ecccceEEEEECCEE----EEEEcC-CCHHHHHHHHHHH
Confidence              889999999998864    455667 6889999999887

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-16  Score=136.96  Aligned_cols=96  Identities=13%  Similarity=0.194  Sum_probs=84.0

Q ss_pred             cCCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeE
Q 006171          142 TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (658)
Q Consensus       142 t~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT  219 (658)
                      |.++|++.+  .++++++|.|||+||++|+++.|.|+++|+++.+ +.+..||+++++   .+|++++      |+++||
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~---~l~~~~~------v~~~Pt   77 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQ---GTAATNN------ISATPT   77 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSH---HHHHHTT------CCSSSE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccch---hhhhhcC------ceeceE
Confidence            668899888  3578999999999999999999999999999875 589999999654   5999999      889999


Q ss_pred             EEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       220 l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +++|++|..    ...+.| .+.+.|.+++.++
T Consensus        78 ~~~~~~G~~----v~~~~G-~~~~~l~~~i~k~  105 (107)
T d1gh2a_          78 FQFFRNKVR----IDQYQG-ADAVGLEEKIKQH  105 (107)
T ss_dssp             EEEEETTEE----EEEEES-SCHHHHHHHHHHH
T ss_pred             EEEEECCEE----EEEEeC-CCHHHHHHHHHHh
Confidence            999998864    567888 4899999999887

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-16  Score=137.66  Aligned_cols=99  Identities=12%  Similarity=0.214  Sum_probs=83.0

Q ss_pred             EEe-cCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          139 NVV-TSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       139 ~~L-t~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      .++ +.++|++.+.  .+++++|+|||+||++|+.+.|.++++++.+.+. .+++||+++++   .+|++++      |+
T Consensus         3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~vd~d~~~---~~~~~~~------V~   72 (105)
T d2ifqa1           3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDCQ---DVASECE------VK   72 (105)
T ss_dssp             EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTS-EEEEEETTTCH---HHHHHTT------CC
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccc-eeeecccccCH---hHHHHcC------ce
Confidence            344 4467888883  4689999999999999999999999999988654 69999999655   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...+.|. +.+.|.+++.+.
T Consensus        73 ~~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          73 CMPTFQFFKKGQK----VGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             BSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEEEEECCEE----EEEEeCC-CHHHHHHHHHhh
Confidence            9999999998864    5678885 788999998765

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.57  E-value=2.9e-16  Score=128.74  Aligned_cols=65  Identities=11%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             ccCcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCc
Q 006171           36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGI  101 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~  101 (658)
                      ..++|+||||++++  +.++||+|||+++++||||++ ++.++|++|++||++|+|+.+|..||..|.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~-g~~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CCHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccC-CCHHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            46899999999988  899999999999999999997 567899999999999999999999998764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.57  E-value=8.4e-16  Score=136.88  Aligned_cols=101  Identities=9%  Similarity=0.069  Sum_probs=77.2

Q ss_pred             EEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCccccee
Q 006171          139 NVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       139 ~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      ..++..+|++.+.  .+.++++.|||+||++|++++|.|+++++++.+. +.++.|||+   ....+|++++      |+
T Consensus        14 ~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d---~~~~l~~~~~------V~   84 (119)
T d2es7a1          14 QPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE---QSEAIGDRFN------VR   84 (119)
T ss_dssp             EECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHH---HHHHHHHTTT------CC
T ss_pred             ceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC---CCHHHHHhcC------cC
Confidence            5688999998883  4778999999999999999999999999999874 689999999   4456999999      89


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...+.|.++.+++++++++.
T Consensus        85 ~~Pt~~~~~~G~~----v~~~~G~~~~~~l~~~i~~l  117 (119)
T d2es7a1          85 RFPATLVFTDGKL----RGALSGIHPWAELLTLMRSI  117 (119)
T ss_dssp             SSSEEEEESCC--------CEESCCCHHHHHHHHHHH
T ss_pred             cceEEEEEEcCeE----EEEeeCCCCHHHHHHHHHHH
Confidence            9999999998864    57889999999999999875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.3e-16  Score=143.15  Aligned_cols=101  Identities=8%  Similarity=0.064  Sum_probs=89.6

Q ss_pred             EEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCCCCccccee
Q 006171          139 NVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       139 ~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      ..++.++|+..+.  .+.++||.|||+||++|++++|.++++++++.+.. .+++|||++   +..||++|+      |+
T Consensus        20 ~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~---~~~la~~~~------V~   90 (132)
T d2hfda1          20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFG------VF   90 (132)
T ss_dssp             EEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH---HHHHHHHHT------CC
T ss_pred             cccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC---CHHHHHhhc------cC
Confidence            5688899998883  45789999999999999999999999999998875 899999994   456999999      89


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ...|.|.++.++|++++.+.
T Consensus        91 ~~PT~~~~~~G~~----v~~~~G~~~~~~l~~~i~~l  123 (132)
T d2hfda1          91 RFPATLVFTGGNY----RGVLNGIHPWAELINLMRGL  123 (132)
T ss_dssp             SCCEEEEEETTEE----EEEECCCSCHHHHHHHHHHH
T ss_pred             cceeEEEEEcCcE----eeeecCCCCHHHHHHHHHHH
Confidence            9999999999864    57889999999999999876

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=4e-16  Score=137.70  Aligned_cols=100  Identities=12%  Similarity=0.102  Sum_probs=84.6

Q ss_pred             EEEe-cCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          138 FNVV-TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       138 V~~L-t~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      |+.+ |.++|++++.++++++|.|||+||++|+++.|.|+++++++. .+.++.|||++++   .+|++++      |++
T Consensus        10 vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~---~l~~~~~------V~~   79 (113)
T d1r26a_          10 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNS---EIVSKCR------VLQ   79 (113)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCH---HHHHHTT------CCS
T ss_pred             eEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccch---hhHHHcc------ccC
Confidence            4555 567899888889999999999999999999999999999985 4699999999665   5999999      889


Q ss_pred             eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+++|++|..    ...+.|. +.+.+.+++.+.
T Consensus        80 ~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~l~~~  110 (113)
T d1r26a_          80 LPTFIIARSGKM----LGHVIGA-NPGMLRQKLRDI  110 (113)
T ss_dssp             SSEEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             CCEEEEEECCEE----EEEEeCC-CHHHHHHHHHHH
Confidence            999999999864    4567785 577788777665

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.56  E-value=4.8e-16  Score=135.32  Aligned_cols=99  Identities=16%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             ecCCCCCccccCCC-cEEEEEeccCCCCCCCChHHHHHHHHHhh----cccceeeeecccchhhhHHHhhCCCCccccee
Q 006171          141 VTSEDFPSIFHDSK-PWLIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (658)
Q Consensus       141 Lt~~nF~~~v~~~~-~~lV~FYapwC~~Ck~l~P~w~~~A~~l~----g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~  215 (658)
                      |+++.++.+.+.++ ++++.||||||+||+++.|.|+++|.+..    +.+.+..||+++++   .+|++|+      |+
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~---~l~~~~~------V~   72 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP---EWADQYN------VM   72 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH---HHHHHTT------CC
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccc---ccccccc------cc
Confidence            44555554445444 45667999999999999999999997643    23578899999655   5999999      88


Q ss_pred             eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      ++||+++|++|..    ..+|.|.++.+.+++++.+.
T Consensus        73 ~vPTi~i~~~G~~----~~~~~G~~~~~~~~~~i~~a  105 (107)
T d1a8la2          73 AVPKIVIQVNGED----RVEFEGAYPEKMFLEKLLSA  105 (107)
T ss_dssp             SSCEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             cceEEEEEeCCeE----EEEEECCCCHHHHHHHHHHh
Confidence            9999999998864    57889999999999999876

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.55  E-value=2.8e-15  Score=125.15  Aligned_cols=80  Identities=11%  Similarity=0.003  Sum_probs=70.4

Q ss_pred             EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      .++.||||||+||+++.|.|+++++++.+.+.++.||+++++.   +|++|+      |+++||++++..        ..
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~---l~~~~~------V~~~Pt~~~~~~--------~~   66 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE---KAIEYG------LMAVPAIAINGV--------VR   66 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG---GGGGTC------SSCSSEEEETTT--------EE
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchh---hHHhcC------ceEeCEEEECCc--------EE
Confidence            4566999999999999999999999998888999999996654   999999      899999987432        45


Q ss_pred             ccCCCCHhHHHHHHHHh
Q 006171          236 FEGELSVDAVTDWFATA  252 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv~k~  252 (658)
                      |.|.++.+.|.+|+.+.
T Consensus        67 ~~G~~~~~~l~~~i~~~   83 (85)
T d1nhoa_          67 FVGAPSREELFEAINDE   83 (85)
T ss_dssp             EECSSCCHHHHHHHHHH
T ss_pred             EEcCCCHHHHHHHHHHh
Confidence            78999999999999886

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.7e-16  Score=141.29  Aligned_cols=97  Identities=11%  Similarity=0.073  Sum_probs=77.6

Q ss_pred             CCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       143 ~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      ..+|+++|  ..+++++|.||||||++|+++.|.|+++|+++++.+.++.|||++++.   +|++|+      |+++||+
T Consensus        10 ~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~---la~~~~------I~~~PT~   80 (137)
T d1qgva_          10 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD---FNKMYE------LYDPCTV   80 (137)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT---TTTSSC------SCSSCEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccch---hhhhcC------eeeEEEE
Confidence            34677787  357799999999999999999999999999999989999999997664   889988      9999999


Q ss_pred             EEcCCCCCCCCCcccc--------cC-CCCHhHHHHHHHH
Q 006171          221 VAFPPGCKSSDCMTRF--------EG-ELSVDAVTDWFAT  251 (658)
Q Consensus       221 ~~f~~g~~~~~~~~~Y--------~G-~rs~~~Lv~fv~k  251 (658)
                      ++|.+|..   ...++        .| ..+.+++++.+..
T Consensus        81 ~~f~~g~~---i~~~~g~~~~~k~~~~l~~~~~~i~~ie~  117 (137)
T d1qgva_          81 MFFFRNKH---IMIDLGTGNNNKINWAMEDKQEMVDIIET  117 (137)
T ss_dssp             EEEETTEE---EEEECC------CCSCCSCHHHHHHHHHH
T ss_pred             EEEeCCcE---EEEEecCCCcceeeeehhhhHHHHHHHHH
Confidence            99998854   11222        12 2456677776654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.50  E-value=1.3e-15  Score=134.50  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=82.2

Q ss_pred             EEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-hhhhHHHhhCCCCcccceeee
Q 006171          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      ..+|.+.+.+.+.++++++|.||+|||+||+++.|.|++++++++..+.+..++..++ .....++++++      |+++
T Consensus        12 ~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~------V~~~   85 (115)
T d1zmaa1          12 EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG------IPTV   85 (115)
T ss_dssp             EECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT------CCSS
T ss_pred             eeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccc------cccc
Confidence            4566677788888899999999999999999999999999999876554444443322 23345888888      8899


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      |||++|++|..    ...|.|.++.++|.+|+
T Consensus        86 PTli~~~~gk~----~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          86 PGFVHITDGQI----NVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             CEEEEEETTEE----EEECCTTCCHHHHHHHH
T ss_pred             cEEEEEECCEE----EEEEcCCCCHHHHHHHH
Confidence            99999998864    57899999999999997

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=6.3e-15  Score=120.47  Aligned_cols=61  Identities=11%  Similarity=0.301  Sum_probs=53.8

Q ss_pred             CcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccc
Q 006171           38 SHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (658)
Q Consensus        38 d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~   98 (658)
                      |||++|||++++  +.++||+|||+++++||||+..+        +.+.|..|++||++|+||.+|+.|+.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            899999999865  58999999999999999998652        23558999999999999999999974

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=4.6e-14  Score=120.62  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhhhcc
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNY   96 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~------~~~~f~~i~~Aye~L~d~~~R~~Y   96 (658)
                      +.+.|++||++..++.++||+|||++++.||||+++.      +.+.|..|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4578999999999999999999999999999997653      345699999999999999999988

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.3e-14  Score=118.12  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=55.7

Q ss_pred             ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (658)
Q Consensus        36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~  102 (658)
                      ..++|+||||+.+||.+|||+|||+|+++||||+|++    +.++|+.|++||++|+   ++..||+++..
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~   82 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSSC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccchH
Confidence            4699999999999999999999999999999999884    4567999999999996   46777766543

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.5e-14  Score=126.23  Aligned_cols=102  Identities=14%  Similarity=0.111  Sum_probs=78.9

Q ss_pred             eEEEecCCCCCcccc--CCCcEEEEEec-------cCCCCCCCChHHHHHHHHHhhcccceeeeecccchh----hhHHH
Q 006171          137 AFNVVTSEDFPSIFH--DSKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL----ATHLA  203 (658)
Q Consensus       137 ~V~~Lt~~nF~~~v~--~~~~~lV~FYa-------pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~----~~~Lc  203 (658)
                      .|...+.++|++.+.  ++++++|.|||       |||++|+++.|.|+++++.+.+.+.++.||+++.+.    ...++
T Consensus         3 ~i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~   82 (119)
T d1woua_           3 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   82 (119)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHH
Confidence            456677788888883  56799999999       599999999999999999988878999999864321    23488


Q ss_pred             hhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171          204 ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       204 ~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv  249 (658)
                      ++++      |+++||+++|.+|.+    ...+.+ .+.+.|..|+
T Consensus        83 ~~~~------V~~iPT~i~~~~g~~----l~~~~~-~~~~ll~~~~  117 (119)
T d1woua_          83 KNLK------VTAVPTLLKYGTPQK----LVESEC-LQANLVEMLF  117 (119)
T ss_dssp             HHHC------CCSSSEEEETTSSCE----EEGGGG-GCHHHHHHHH
T ss_pred             HhCC------eEEEEEEEEEECCeE----Eeeeec-CCHHHHHHHh
Confidence            8888      899999999998864    344444 3345554454

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.37  E-value=2.5e-13  Score=115.92  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~  231 (658)
                      .+...++.||||||+||+++.|.|+++|... +.+.+..||+++++   ++|++|+      |+++||+++  +|.    
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~~~---~l~~~~~------I~~vPt~~~--ng~----   77 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQ---NEITERN------VMGVPAVFV--NGK----   77 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCH---HHHHHTT------CCSSSEEEE--TTE----
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEecccch---HHHhhcc------cccccEEEE--CCE----
Confidence            3556788899999999999999999999764 45799999999655   5999999      889999855  553    


Q ss_pred             CcccccCCCCHhHHHHHH
Q 006171          232 CMTRFEGELSVDAVTDWF  249 (658)
Q Consensus       232 ~~~~Y~G~rs~~~Lv~fv  249 (658)
                        ..|.|.++.++|++++
T Consensus        78 --~~~~G~~~~~~l~~~l   93 (96)
T d1hyua4          78 --EFGQGRMTLTEIVAKV   93 (96)
T ss_dssp             --EEEESCCCHHHHHHHH
T ss_pred             --EEEecCCCHHHHHHHH
Confidence              3578999999999986

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.2e-13  Score=120.00  Aligned_cols=99  Identities=15%  Similarity=0.267  Sum_probs=71.7

Q ss_pred             CCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHH---HHHHhhcccceeeeecc-cchhhhHHHhhCCCCcccceeee
Q 006171          144 EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       144 ~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~---~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      ++++..+  ..++++||.|||+||++|+.+.|.+.+   +++.+.. ..+..+++. +......+|++++      |.++
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~------v~~~   83 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN------VLGL   83 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT------CCSS
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccc-eEEEecccccchhHHHHHHhhhe------hhhc
Confidence            4455555  367899999999999999999999844   4444433 345556654 2234556999999      8899


Q ss_pred             eEEEEcCC-CCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          218 PSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       218 PTl~~f~~-g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      ||+++|.+ |..  ....++.|.++++.+.+++++
T Consensus        84 Pt~~~~~~~G~~--~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          84 PTILFFDGQGQE--HPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             SEEEEECTTSCB--CGGGCBCSCCCHHHHHHHHHH
T ss_pred             eEEEEEeCCCcE--EecccccccCCHHHHHHHHhc
Confidence            99999954 432  112356799999999999875

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.8e-10  Score=112.53  Aligned_cols=101  Identities=15%  Similarity=0.294  Sum_probs=77.0

Q ss_pred             eEEEecC-CCCCccc-c--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171          137 AFNVVTS-EDFPSIF-H--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (658)
Q Consensus       137 ~V~~Lt~-~nF~~~v-~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f  212 (658)
                      .|..++. ++|...| +  .+.+++|.||+|||++|+.+.|.++++|..+. .++|.+||+++.+    +..+|+     
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-~vkF~ki~~~~~~----~~~~~~-----  169 (217)
T d2trcp_         100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRASNTG----AGDRFS-----  169 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHHHHT----CSTTSC-----
T ss_pred             eEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-cceEEEEccccch----hHHhCC-----
Confidence            4788864 7798888 3  34568899999999999999999999999874 4699999998432    556677     


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccC-------CCCHhHHHHHHHHh
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEG-------ELSVDAVTDWFATA  252 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G-------~rs~~~Lv~fv~k~  252 (658)
                       |+++|||++|++|..    ...+-|       ..+.++|..|+.++
T Consensus       170 -i~~lPtl~~yk~G~~----v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         170 -SDVLPTLLVYKGGEL----ISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             -GGGCSEEEEEETTEE----EEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             -CCCCCeEEEEECCEE----EEEEECccccccccCCHHHHHHHHHHc
Confidence             999999999999863    222222       23567777776654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=2.8e-08  Score=88.53  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=65.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-cchhhhHHHhhCCC-------------Ccccceeee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPI-------------GQIFFRRGL  217 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i-------------~k~f~V~~y  217 (658)
                      .+++++|.|+|+||++|++..|.++++++++++...+ .|+.. ........++++++             .+.|.+.++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v-~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFV-GVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE-EEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcccccc-cccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            4789999999999999999999999999988664333 33322 22222223333222             124559999


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      |+.+++...+.    ...+.|..+.++|.+.+++
T Consensus       103 P~~~iiD~~G~----i~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1         103 PAYAFVDPHGN----VDVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             SEEEEECTTCC----EEEEESCCCHHHHHHHHHH
T ss_pred             CeEEEECCCCe----EEEEECCCCHHHHHHHHHh
Confidence            99999955443    2345788899998888765

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-08  Score=91.30  Aligned_cols=76  Identities=9%  Similarity=0.036  Sum_probs=52.9

Q ss_pred             CCCCccc----cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          144 EDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       144 ~nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      .+|++.+    .+++++||.|||+||++|++++|.+.+..+..+  ....+..||+++...   ++..+.     ...++
T Consensus        12 ~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~---~~~~~~-----~~~~~   83 (135)
T d1sena_          12 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK---DEDFSP-----DGGYI   83 (135)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCS---CGGGCT-----TCSCS
T ss_pred             eEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHH---HHHHHh-----hcccc
Confidence            4455544    378999999999999999999999977654332  334677888884433   333321     14478


Q ss_pred             eEEEEcCCCC
Q 006171          218 PSLVAFPPGC  227 (658)
Q Consensus       218 PTl~~f~~g~  227 (658)
                      ||++++.+.+
T Consensus        84 Pt~~~~d~~G   93 (135)
T d1sena_          84 PRILFLDPSG   93 (135)
T ss_dssp             SEEEEECTTS
T ss_pred             eeEEEECCCC
Confidence            9999996543

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.5e-07  Score=81.22  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP  340 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~  340 (658)
                      +++...++.|+...   .+.||.|. +........+..+|..++ .+.|+++.     ..++.++++++. |+|++||+.
T Consensus         5 l~~~~~~e~f~~~~---~v~VVGfF~~~~~~~~~~F~~~A~~~~-d~~F~~t~-----~~~v~~~~~v~~-~~Ivl~k~~   74 (110)
T d1bjxa_           5 LPDGAAAESLVESS---EVAVIGFFKDVESDSAKQFLQAAEAID-DIPFGITS-----NSDVFSKYQLDK-DGVVLFKKF   74 (110)
T ss_dssp             CCSHHHHHHHHHHS---SEEEEEECTTTTSHHHHHHHHHHHHCS-SSCEEEEC-----CSHHHHHTTCSS-CEEEEEESS
T ss_pred             cCCHHHHHHHhccC---CeEEEEEEcCCCchHHHHHHHHHHhCc-CceEEEEC-----CHHHHHHcCCCC-CeEEEeccC
Confidence            44545578898754   36666554 332223345677888875 57888874     345889999964 999999998


Q ss_pred             CCCeeeecCCCChHHHHHHHHhhccCCCccccCcc
Q 006171          341 GVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT  375 (658)
Q Consensus       341 ~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~  375 (658)
                      ++....|.|.++.+.|.+||..|.+|++.+++..|
T Consensus        75 de~~~~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~  109 (110)
T d1bjxa_          75 DEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQT  109 (110)
T ss_dssp             SSSBCCCCSCCCHHHHHHHHHHHSSCCCSSCCCTT
T ss_pred             CccccccCCCCCHHHHHHHHHHcCcCcEEecCCCC
Confidence            88888789999999999999999999999998876

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.53  E-value=4.6e-08  Score=87.97  Aligned_cols=93  Identities=15%  Similarity=0.067  Sum_probs=67.2

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccc------h-------------------hhhHHHh
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI------R-------------------LATHLAE  204 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~------~-------------------~~~~Lc~  204 (658)
                      ..+++++|.|||+||++|++..|.+.++.++++... .+-.|.....      .                   ....+++
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence            467999999999999999999999999999887643 4444443210      0                   0112445


Q ss_pred             hCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       205 k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .|+      ++++|+++++-..+.   ....+.|..+.+.+.+++++.
T Consensus       101 ~~~------v~~~P~~~liD~~G~---i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1         101 SLN------ISVYPSWALIGKDGD---VQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             HTT------CCSSSEEEEECTTSC---EEEEEESCCCHHHHHHHHHCT
T ss_pred             HcC------CCccCEEEEECCCCE---EEEEEECCCCHHHHHHHHHHH
Confidence            555      899999999844332   234678999999999988654

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.2e-07  Score=83.34  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             CCCCccc----cCCCcEEEEEeccCCCCCCCChH-HH--HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171          144 EDFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (658)
Q Consensus       144 ~nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P-~w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~  216 (658)
                      .+|++.+    .+++++||.||++||+.|+.|.. +|  +++.+.++....+..||.+.. ....++++|+      |.+
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~-e~~~~~~~y~------v~~  101 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSE-EGQRYIQFYK------LGD  101 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSH-HHHHHHHHHT------CCS
T ss_pred             CCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccch-hhhhhhhhee------cCc
Confidence            3455555    36899999999999999999876 33  445555655556777776633 2345889988      889


Q ss_pred             eeEEEEcCC--CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          217 LPSLVAFPP--GCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       217 yPTl~~f~~--g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      +||+.++.+  |..     ...-|..+.+.+++.+++.
T Consensus       102 ~Pti~~idp~~ge~-----v~~~~~~~~~~fl~~L~~f  134 (147)
T d2dlxa1         102 FPYVSILDPRTGQK-----LVEWHQLDVSSFLDQVTGF  134 (147)
T ss_dssp             SSEEEEECTTTCCC-----CEEESSCCHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCeE-----ecccCCCCHHHHHHHHHHH
Confidence            999999964  332     2334667888887777665

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=2.1e-07  Score=82.88  Aligned_cols=97  Identities=11%  Similarity=0.103  Sum_probs=63.4

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-hhhhHHHhhCCC------------Ccccceeeee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKPI------------GQIFFRRGLP  218 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~~~~~Lc~k~~i------------~k~f~V~~yP  218 (658)
                      .+++++|.|||+||++|+...|.+++++.+.++. .+..|+.+++ ....+.++++++            .+.|.|.++|
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v-~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P  101 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAV-TFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTS-EEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhccc-cccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCC
Confidence            4789999999999999999999999999877653 5555665422 111122222222            1234489999


Q ss_pred             EEEEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~  250 (658)
                      +++++...+.. .......|..+.++|.+-+.
T Consensus       102 ~~~lid~~G~i-~~v~~~~g~~~~~~l~~~l~  132 (134)
T d1lu4a_         102 AFVFYRADGTS-TFVNNPTAAMSQDELSGRVA  132 (134)
T ss_dssp             EEEEECTTSCE-EEECCSSSCCCHHHHHHHHH
T ss_pred             EEEEEeCCCeE-EEEeccCCCCCHHHHHHHHH
Confidence            99999654430 00122357788888887664

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.32  E-value=1.1e-06  Score=78.03  Aligned_cols=129  Identities=13%  Similarity=0.174  Sum_probs=87.0

Q ss_pred             ccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHH
Q 006171          364 KLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAV  443 (658)
Q Consensus       364 ~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~  443 (658)
                      .+|++++++..|.....-       .++    .+ ++++.+.+.+.+++++.++.+|+                      
T Consensus         4 ~lPLv~e~~~~n~~~~~~-------~~~----pl-~~lf~~~~~~~~~~~~~~~~vA~----------------------   49 (133)
T d2djka1           4 GSPLIGEIGPETYSDYMS-------AGI----PL-AYIFAETAEERKELSDKLKPIAE----------------------   49 (133)
T ss_dssp             SCCCSEECCHHHHHHHHH-------TTS----CE-EEEECSCSSSHHHHHHHHHHHHH----------------------
T ss_pred             CCCceeccChhhHHHHhc-------CCC----CE-EEEEeCCchHHHHHHHHHHHHHH----------------------
Confidence            478899999888654221       122    23 55666666677888889988888                      


Q ss_pred             hcCCCcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCc
Q 006171          444 AFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDP  523 (658)
Q Consensus       444 ~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~  523 (658)
                      +|+++ +.|+|+|++...+.++.|..            ..++.|.++|+    +...+ .+|.   +      ..     
T Consensus        50 ~~~~k-i~Fv~vd~~~~~~~l~~~gl------------~~~~~P~~~i~----~~~~~-~~~~---~------~~-----   97 (133)
T d2djka1          50 AQRGV-INFGTIDAKAFGAHAGNLNL------------KTDKFPAFAIQ----EVAKN-QKFP---F------DQ-----   97 (133)
T ss_dssp             SSTTT-SEEEEECTTTTGGGTTTTTC------------CSSSSSEEEEE----CTTTC-CBCC---C------CS-----
T ss_pred             HhcCc-eEEEEEeHHHhHHHHHHhcC------------CcccCCcEEEE----EcCCC-ceec---C------Cc-----
Confidence            67654 99999999876666666522            22367999988    44432 2332   1      11     


Q ss_pred             cccchhccCCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCCCC
Q 006171          524 ASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVP  568 (658)
Q Consensus       524 ~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l~~  568 (658)
                              ++.-+.+.|.+||.+++.  ++....++++++|+-+|
T Consensus        98 --------~~~i~~~~i~~Fi~d~~~--Gkl~p~~kSe~iPe~~d  132 (133)
T d2djka1          98 --------EKEITFEAIKAFVDDFVA--GKIEPSIKSEPIPEKQE  132 (133)
T ss_dssp             --------SSCCCHHHHHHHHHHHHH--TCCCCSSCCCCCCTTSC
T ss_pred             --------cccCCHHHHHHHHHHHHc--CCCCcccccCCCCCCCC
Confidence                    112256899999999999  67788888999998543

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.28  E-value=1.4e-06  Score=73.79  Aligned_cols=96  Identities=13%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             eeccchhhhhhhhhcCCCcEEEEEE-eCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeC
Q 006171          261 YYTKESMGKNFLAKTGPHKVKVIFF-SKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD  339 (658)
Q Consensus       261 ~it~~~~~~~Fl~~~~~~~v~vl~f-~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~  339 (658)
                      ++++...++.|++..  +.+.||.| .+........+..+|..+++.+.||++.     +.++.+++|++ .|+|++|++
T Consensus         3 ~i~~~~e~~~F~~~~--d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t~-----d~~va~~~~v~-~~~vvlfr~   74 (102)
T d1a8ya2           3 LIEGERELQAFENIE--DEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTLK-LNEIDFYEA   74 (102)
T ss_dssp             EECSHHHHHHHTTCC--SSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEEC-----CHHHHHHHCCC-TTCEEEECT
T ss_pred             eecCHHHHHHHhccC--CCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEEC-----CHHHHHHcCCC-CCCEEEeee
Confidence            355555578888632  33556654 4322222334455888888899999985     56799999995 799999999


Q ss_pred             CCCCeeeecCC-CChHHHHHHHHhhc
Q 006171          340 PGVKPVVYYGS-FNNSRLSEVMEQNK  364 (658)
Q Consensus       340 ~~~~p~~y~g~-~~~~~L~~fi~~~~  364 (658)
                      .+++++.|.|. ++.+.|.+||+.|+
T Consensus        75 fde~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          75 FMEEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             TCSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             cCCCceecCCCCCCHHHHHHHHHHhc
Confidence            99999999985 89999999999986

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.6e-07  Score=83.72  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=60.8

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc--h------------------hhhHHHhhCCCCc
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--R------------------LATHLAERKPIGQ  210 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--~------------------~~~~Lc~k~~i~k  210 (658)
                      ..+++++|.|||+||++|++-.|.++++++.  + +.+..++.+..  .                  ....+++.++   
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~--~-~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---   91 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG---   91 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHT--T-CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHT---
T ss_pred             cCCCEEEEEEEcCcCCCcCccccchhhhhhh--h-hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcc---
Confidence            4689999999999999999999999988653  2 22222222211  0                  0112444555   


Q ss_pred             ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                         |.++||.+++-..+.   ....+.|..+.+.+.+.+.+.
T Consensus        92 ---v~~~P~~~liD~~G~---i~~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          92 ---VYGAPETFLIDGNGI---IRYRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             ---CCSBSEEEEECTTSC---EEEEEESCCCHHHHHHHTHHH
T ss_pred             ---cCCcceEEEEcCCCE---EEEEEEcCCCHHHHHHHHHHH
Confidence               889999888854433   245678999988888777665

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=3.7e-07  Score=82.09  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=68.6

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc------hhhhHHHhhCCC------------Cccc
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI------RLATHLAERKPI------------GQIF  212 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~------~~~~~Lc~k~~i------------~k~f  212 (658)
                      ..+++++|.||++||++|++..|.++++.+++++.+.+..|+++..      ....+..+++++            .+.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            4678999999999999999999999999999987677777765311      111223333332            2245


Q ss_pred             ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      .+.++||++++-..+.   ....+.|..+.+.|.+-+.+
T Consensus       107 ~v~~~P~~~~id~~G~---i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         107 ENEYVPAYYVFDKTGQ---LRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CCCCSSEEEEECTTCB---EEEEEESCSTTHHHHHHHHH
T ss_pred             CCCcCCEEEEECCCCE---EEEEEECCCCHHHHHHHHHh
Confidence            5899999888844332   23456788888877776654

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=4.1e-07  Score=81.04  Aligned_cols=96  Identities=10%  Similarity=0.154  Sum_probs=68.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccch-hhhHHHhhCCC------------Ccccceeee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR-LATHLAERKPI------------GQIFFRRGL  217 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~-~~~~Lc~k~~i------------~k~f~V~~y  217 (658)
                      .+++++|.||++||++|++..|.+.++.+.+... +.+..|+++++. .....++++++            .+.|.+.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            5679999999999999999999999999999765 377778776432 22223333322            134558999


Q ss_pred             eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~  250 (658)
                      |+++++-..+.   ....+.|..+.+.+.++++
T Consensus       104 P~~~liD~~G~---i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_         104 PTTFLINPEGK---VVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             CEEEEECTTSE---EEEEEESCCCHHHHHHHHH
T ss_pred             ceEEEECCCCE---EEEEEECCCCHHHHHHHHH
Confidence            99998865543   2345679888888777664

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.24  E-value=2.3e-07  Score=83.52  Aligned_cols=90  Identities=10%  Similarity=0.051  Sum_probs=61.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc-ch-------------------hhhHHHhhCCCCcc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD-IR-------------------LATHLAERKPIGQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e-~~-------------------~~~~Lc~k~~i~k~  211 (658)
                      .+++++|.||+.||++|+...|.+.++.+..+..  +-.|+-.. ..                   ....+.+.++    
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  103 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQ--LVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWG----  103 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSE--EEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTT----
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCce--eEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcC----
Confidence            4689999999999999999999999887655322  21112110 00                   0122555555    


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                        |.++||.+++-..+.   ....+.|..+.+++.+.+.+.
T Consensus       104 --v~~~P~~~liD~~G~---i~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         104 --VYGVPETFVVGREGT---IVYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             --CCSSCEEEEECTTSB---EEEEEESCCCHHHHHHTHHHH
T ss_pred             --ccccceEEEEcCCCe---EEEEEeCCCCHHHHHHHHHHH
Confidence              889999888854433   234567999999988887665

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.18  E-value=4.9e-07  Score=81.68  Aligned_cols=68  Identities=9%  Similarity=0.030  Sum_probs=52.1

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc--cceeeeecccchhh---------------------hHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLA---------------------THLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~--~~vg~Vdc~e~~~~---------------------~~Lc~k~~i  208 (658)
                      .+++++|.|+|+||++|++..|...++.++++..  +.|..|+.+++...                     ..|++.|+ 
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~-  105 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD-  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC-
Confidence            5789999999999999999999999999998653  35677776633211                     12445555 


Q ss_pred             CcccceeeeeEEEEcCC
Q 006171          209 GQIFFRRGLPSLVAFPP  225 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~~  225 (658)
                           |+++||++++.+
T Consensus       106 -----v~~iPt~~lid~  117 (144)
T d1i5ga_         106 -----VKSIPTLVGVEA  117 (144)
T ss_dssp             -----CCSSSEEEEEET
T ss_pred             -----CCCcCEEEEEeC
Confidence                 999999998854

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=3.7e-06  Score=73.05  Aligned_cols=99  Identities=12%  Similarity=0.182  Sum_probs=70.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCC---CCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      ++.++ +++++++   ++..+|.| .+-   |....+.+..++..+.+ .+.|+.|...  +..+++.+|+|.++|||++
T Consensus        15 lt~~~-f~~~i~~---~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~   88 (119)
T d2b5ea4          15 LATDS-FNEYIQS---HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT--ENQDLCMEHNIPGFPSLKI   88 (119)
T ss_dssp             CCTTT-HHHHHTT---CSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT--TCHHHHHHTTCCSSSEEEE
T ss_pred             cCHHH-HHHHHhc---CCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeecc--chHHHHHHhccccCCeEEE
Confidence            55555 5677653   33445544 432   22345777778888754 4778888543  2478999999999999999


Q ss_pred             EeCCCC-CeeeecCCCChHHHHHHHHhhccC
Q 006171          337 LKDPGV-KPVVYYGSFNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       337 fk~~~~-~p~~y~g~~~~~~L~~fi~~~~~~  366 (658)
                      |+++.. .+..|.|..+.+.|.+||+++.-|
T Consensus        89 f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          89 FKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            987643 455689999999999999986544

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=3.9e-07  Score=77.22  Aligned_cols=82  Identities=11%  Similarity=0.065  Sum_probs=63.7

Q ss_pred             cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCC
Q 006171          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (658)
Q Consensus       151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~  230 (658)
                      ++..+.++.|+++||+.|+++.|.+++++.++.  ..+..||.++++   .|.++|+      ++ .|+|.+  +|..  
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~---~l~~~y~------~~-VPvl~i--dg~~--   76 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENS---TWYERYK------FD-IPVFHL--NGQF--   76 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTH---HHHHHSS------SS-CSEEEE--SSSE--
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCH---HHHHHhc------cc-CCceee--cCce--
Confidence            467789999999999999999999888876554  356677777544   5999998      76 898765  5532  


Q ss_pred             CCcccccCCCCHhHHHHHHHHh
Q 006171          231 DCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       231 ~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                          ...|..+.+.|.+++.+.
T Consensus        77 ----~~~g~~d~~~L~~~L~~l   94 (100)
T d1wjka_          77 ----LMMHRVNTSKLEKQLRKL   94 (100)
T ss_dssp             ----EEESSCCHHHHHHHHHSS
T ss_pred             ----EEeCCCCHHHHHHHHHHH
Confidence                346888999999998764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=97.98  E-value=1e-05  Score=68.71  Aligned_cols=96  Identities=14%  Similarity=0.181  Sum_probs=66.4

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +|+++ +++.+..  .+++.+|.| .+-|   ....+.+..++..+.+.+.|+.+...+  ...++++|+|.++||+++|
T Consensus         7 lt~~~-f~~~v~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           7 ITDAE-FESEVLK--AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CCGGG-HHHHTTT--CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             CCHHH-HHHHHHh--CCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccc--cHHHHHHhcccCCCEEEEE
Confidence            56555 3333321  234555544 4322   224567777888888888888886432  5789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++ .....+.|..+.+.|.+||+++
T Consensus        82 ~~g-~~v~~~~G~~~~~~l~~~i~~~  106 (108)
T d1thxa_          82 KGE-QILDSTEGVISKDKLLSFLDTH  106 (108)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             ECC-EEEEEEeCCCCHHHHHHHHHHh
Confidence            864 2333478999999999999875

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=97.93  E-value=2.4e-06  Score=76.75  Aligned_cols=74  Identities=11%  Similarity=0.145  Sum_probs=50.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc--cceeeeecccchh-hhHHHhhCC--------------CCcccce
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRL-ATHLAERKP--------------IGQIFFR  214 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~--~~vg~Vdc~e~~~-~~~Lc~k~~--------------i~k~f~V  214 (658)
                      .+++++|.|||+||++|++..|...++.+++...  +.+..|+.++... ..+..++.+              +.+.|.|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            4789999999999999999999999999988543  3566666653211 111111110              1223458


Q ss_pred             eeeeEEEEcCC
Q 006171          215 RGLPSLVAFPP  225 (658)
Q Consensus       215 ~~yPTl~~f~~  225 (658)
                      +++||++++-.
T Consensus       107 ~~~Pt~~lID~  117 (144)
T d1o73a_         107 ESIPTLITINA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEEC
Confidence            99999999864

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.89  E-value=3.8e-05  Score=66.87  Aligned_cols=96  Identities=13%  Similarity=0.161  Sum_probs=62.9

Q ss_pred             eeccchhhhhhhhhcCCCcEEEEEEeCCCCC--CcHHH-------HHHHHhhcc-CceEEEEEecccccHhHHhhcCCCC
Q 006171          261 YYTKESMGKNFLAKTGPHKVKVIFFSKTGER--ASPFV-------RQISRNYWA-YASFAFVLWREEESSIWWNTFEVES  330 (658)
Q Consensus       261 ~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~--~~~~~-------~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~  330 (658)
                      .++..+ ++++++...  .+.|.|+.+-+.+  ..+.+       ..+|..+.+ .+.|+.|...  ....++++|+|.+
T Consensus        15 ~L~~~n-f~~~l~~~~--~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~--~~~~l~~~~~I~~   89 (124)
T d1a8ya1          15 NVNAKN-YKNVFKKYE--VLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE--KDAAVAKKLGLTE   89 (124)
T ss_dssp             ECCTTT-HHHHHHHCS--EEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETT--TSHHHHHTTTCCS
T ss_pred             ECCHHH-HHHHHHhCC--eEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEee--cccchhhcccccc
Confidence            356656 677776432  3555555543322  11222       223433332 3567776532  2478999999999


Q ss_pred             CCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          331 APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       331 ~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +|||++|+++  +++.|.|..+.+.|.+|+.+.
T Consensus        90 yPTi~~f~~g--~~~~y~G~r~~~~l~~fi~~~  120 (124)
T d1a8ya1          90 EDSIYVFKED--EVIEYDGEFSADTLVEFLLDV  120 (124)
T ss_dssp             TTCEEEEESS--SEEECCSCCSHHHHHHHHHHH
T ss_pred             CCcEEEeccC--ccEEeeCCCCHHHHHHHHHHh
Confidence            9999999875  677899999999999999763

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=3.9e-06  Score=79.06  Aligned_cols=84  Identities=13%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc------c--hhhhHHHhhCCC------------Ccc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD------I--RLATHLAERKPI------------GQI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e------~--~~~~~Lc~k~~i------------~k~  211 (658)
                      .+++++|.|+|.||+.|++..|...++++++++.+.+..|+..+      .  ......++++++            .+.
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            36789999999999999999999999999998766555555321      0  111112222211            224


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCC
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGEL  240 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~r  240 (658)
                      |.|.++|+.+++-....     ..|.|..
T Consensus       111 ~~v~~~P~~~liD~~G~-----i~y~G~i  134 (187)
T d2cvba1         111 YRALRTPEVFLFDERRL-----LRYHGRV  134 (187)
T ss_dssp             TTCCEESEEEEECTTCB-----EEEEECS
T ss_pred             ccccceeeEEEEcCCCe-----EEEEeee
Confidence            55999999999976654     6787754

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.3e-05  Score=67.67  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=69.7

Q ss_pred             eccchhhhhhhhhcCCCcEEEE-EEeC---CCCCCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVI-FFSK---TGERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAI  334 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl-~f~~---~~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptl  334 (658)
                      ++.++ +++.+++.   +..+| |+.+   .|....|.+..++..+..   .+.++.+....  ...++.+|+|.++||+
T Consensus        12 l~~~~-f~~~l~~~---k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~   85 (120)
T d1meka_          12 LRKSN-FAEALAAH---KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             CCTTT-HHHHHHHC---SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSSEE
T ss_pred             cCHHH-HHHHHhcC---CcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc--chhHHHHhCCccCCeE
Confidence            55555 56666542   34455 4443   345567788888877754   35666665332  3679999999999999


Q ss_pred             EEEeCCCC-CeeeecCCCChHHHHHHHHhhccC
Q 006171          335 VFLKDPGV-KPVVYYGSFNNSRLSEVMEQNKLQ  366 (658)
Q Consensus       335 vlfk~~~~-~p~~y~g~~~~~~L~~fi~~~~~~  366 (658)
                      ++|+++.. .+..|.|..+.+.|.+||+++.-|
T Consensus        86 ~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p  118 (120)
T d1meka_          86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEECCeEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            99998754 356689999999999999987655

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=97.84  E-value=8.3e-06  Score=68.90  Aligned_cols=94  Identities=13%  Similarity=0.113  Sum_probs=67.4

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +|+++ +++.++   .+++.+|.| .+-+   ....|.+..++..|.+.+.|+.+....  ...++++|+|.++||+++|
T Consensus         5 lt~~~-f~~~i~---~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           5 LTDAN-FQQAIQ---GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             ECTTT-HHHHTT---SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCBSSEEEEE
T ss_pred             ECHHH-HHHHHh---CCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCC--CcccHHHCCcceeeEEEEE
Confidence            55555 456664   345656655 3322   224566777888898888888886432  4789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ++|. ....+.|..+.+.|.++|++
T Consensus        79 ~~G~-~~~~~~G~~~~~~l~~~i~~  102 (105)
T d1nw2a_          79 KGGE-PVKQLIGYQPKEQLEAQLAD  102 (105)
T ss_dssp             ETTE-EEEEEESCCCHHHHHHHTTT
T ss_pred             ECCE-EEEEEECCCCHHHHHHHHHH
Confidence            9754 33357899899999999875

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.76  E-value=8e-06  Score=72.86  Aligned_cols=68  Identities=7%  Similarity=0.016  Sum_probs=50.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc--cceeeeecccchh---------------------hhHHHhhCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRL---------------------ATHLAERKPI  208 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~--~~vg~Vdc~e~~~---------------------~~~Lc~k~~i  208 (658)
                      .+++++|.|+++||++|+...|...++.+++...  +.+..|+.+++..                     ...+.+.|+ 
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~-  103 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN-  103 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT-
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcC-
Confidence            4789999999999999999999999999999654  3455555543211                     112455555 


Q ss_pred             CcccceeeeeEEEEcCC
Q 006171          209 GQIFFRRGLPSLVAFPP  225 (658)
Q Consensus       209 ~k~f~V~~yPTl~~f~~  225 (658)
                           |+++||++++-.
T Consensus       104 -----v~~~Pt~~liD~  115 (144)
T d1o8xa_         104 -----VESIPTLIGVDA  115 (144)
T ss_dssp             -----CCSSSEEEEEET
T ss_pred             -----CCcCCEEEEEeC
Confidence                 999999999964

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.76  E-value=6.4e-06  Score=70.73  Aligned_cols=99  Identities=15%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             eeccchhhhhhhhhcCCCc-EEEEEEeC---CCCCCcHHHHHHHHhhccCce--EEEEEecccccHhHHhhcCCCCCCEE
Q 006171          261 YYTKESMGKNFLAKTGPHK-VKVIFFSK---TGERASPFVRQISRNYWAYAS--FAFVLWREEESSIWWNTFEVESAPAI  334 (658)
Q Consensus       261 ~it~~~~~~~Fl~~~~~~~-v~vl~f~~---~~~~~~~~~~~~A~~~~~~~~--f~~v~~~~~~s~~l~~~f~V~~~Ptl  334 (658)
                      .++.++ +++++..  .++ +.|.|+.+   .|....|.+..+|..|.....  +..+...+  ...++.+++|.++|||
T Consensus         6 ~lt~~n-F~~~v~~--~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~Pti   80 (116)
T d2djja1           6 VVVAKN-YNEIVLD--DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVD--ATANDVPDEIQGFPTI   80 (116)
T ss_dssp             ECCTTT-TTTSSSC--TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEE--TTTSCCSSCCSSSSEE
T ss_pred             EcccCC-HHHHHhc--CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecc--cchhhhcccccCCCEE
Confidence            355555 4555422  234 44555544   233457788888887765422  22232222  3456778999999999


Q ss_pred             EEEeCCCC-CeeeecCCCChHHHHHHHHhhc
Q 006171          335 VFLKDPGV-KPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       335 vlfk~~~~-~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      ++|+++.. .+..|.|.++.+.|.+||++|.
T Consensus        81 ~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          81 KLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             EEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EEEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            99987654 4567899999999999999864

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=97.75  E-value=2.2e-05  Score=66.04  Aligned_cols=96  Identities=16%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+ +++.+..  ..++.+|.| .+-|   ....|.+..++..+.+...++.+...  +.++++++|+|.++||+++|
T Consensus         4 l~d~~-f~~~v~~--~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d--~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           4 VNDSS-WKEFVLE--SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD--EAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CCTTT-HHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             Cchhh-HHHHHHc--CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecc--cchhhhhhcceeeeeEEEEE
Confidence            45544 4444432  234555544 4322   22356667788888777777776533  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ++| .....+.|..+.+.|.+||+++
T Consensus        79 ~~G-~~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          79 KNG-ERKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             ETT-EEEEEEEECCCHHHHHHHHHHH
T ss_pred             EcC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            865 3333578999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.72  E-value=2.4e-05  Score=66.15  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=66.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++++ +++.+..  .+++.+|.| .+-|   ....|.+..++..+.+...|+.+....  ..+++++|+|.++||+++|
T Consensus         6 i~~~~-f~~~v~~--s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           6 VNDDT-FKNVVLE--SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             ECHHH-HHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEE
T ss_pred             ecHHH-HHHHHHh--CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEeccc--chhHHHHhcccceEEEEEE
Confidence            45544 4444432  345556644 4322   223566677888888888888886432  4789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ++|. ....+.|..+.+.|.+||+++
T Consensus        81 ~~G~-~v~~~~G~~~~~~l~~~i~~~  105 (107)
T d1dbya_          81 KGGK-KCETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             SSSS-EEEEEESCCCHHHHHHHHHHH
T ss_pred             ECCe-EEEEEeCCCCHHHHHHHHHHh
Confidence            8653 444578999999999999875

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.72  E-value=1.8e-05  Score=73.20  Aligned_cols=98  Identities=14%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc--cchhhhHHHhhCCCC-----------------cc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--DIRLATHLAERKPIG-----------------QI  211 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~--e~~~~~~Lc~k~~i~-----------------k~  211 (658)
                      .+++++|.|+++||++|+...+...++.+.+.... .|..|+.+  +.......++++++.                 +.
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            56899999999999999999999999998887654 66667655  222334455665442                 23


Q ss_pred             cceeeeeEEEEcCCCCCCCCCcccccCCC--CHhHHHHHHHHh
Q 006171          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (658)
Q Consensus       212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~r--s~~~Lv~fv~k~  252 (658)
                      |.+.++|+.+++-..+.   ....|.|..  +.++++++++..
T Consensus       135 ~~v~~~P~~~lID~~G~---I~~~~~G~~~~~~~e~~~~l~al  174 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGC---EIATIAGPAEWASEDALKLIRAA  174 (176)
T ss_dssp             TCCSSSSEEEEECTTSB---EEEEEESCCCTTSHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCE---EEEEEECCCCCChHHHHHHHHHh
Confidence            45788999888855443   233566753  557788877654

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.6e-05  Score=70.75  Aligned_cols=101  Identities=18%  Similarity=0.277  Sum_probs=66.5

Q ss_pred             eccchhhhhhhhhcCCCc-EEEEEEeCC---CCCCcHHHHHHHHhhccCc-eEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAYA-SFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~-v~vl~f~~~---~~~~~~~~~~~A~~~~~~~-~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      ++..+ +++++..  .++ +.|.|+.+-   |....|.+..+|..|.+.. .+.++.. ++ ...++.+|+|.++|||++
T Consensus        17 l~~~n-f~~~v~~--~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~-d~-~~~~~~~~~v~~~Ptl~~   91 (140)
T d2b5ea1          17 LVGKN-HDEIVND--PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL-DH-TENDVRGVVIEGYPTIVL   91 (140)
T ss_dssp             ECTTT-HHHHHHC--TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE-EG-GGCCCSSCCCSSSSEEEE
T ss_pred             ecCcC-HHHHHhc--CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEee-ec-cchhccccccccCCeEEE
Confidence            55555 4666542  234 444455432   2335677777888775422 2333322 22 346899999999999999


Q ss_pred             EeCCCC-CeeeecCCCChHHHHHHHHhhccCC
Q 006171          337 LKDPGV-KPVVYYGSFNNSRLSEVMEQNKLQE  367 (658)
Q Consensus       337 fk~~~~-~p~~y~g~~~~~~L~~fi~~~~~~~  367 (658)
                      |+++.. .++.|.|.++.+.|.+||++|....
T Consensus        92 f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~~  123 (140)
T d2b5ea1          92 YPGGKKSESVVYQGSRSLDSLFDFIKENGHFD  123 (140)
T ss_dssp             ECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTC
T ss_pred             EECCEEcceeEeCCCCCHHHHHHHHHHcCCCC
Confidence            997643 4667999999999999999875443

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.68  E-value=2.1e-05  Score=67.41  Aligned_cols=93  Identities=19%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             hhhhhhh-cCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171          268 GKNFLAK-TGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (658)
Q Consensus       268 ~~~Fl~~-~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~  342 (658)
                      +++.+.. ...+++.+|.|. +-   |....|.+..++..+.+.+.|+.+...  +...++++|+|.+.||+++|+++. 
T Consensus        13 fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~-   89 (112)
T d1ep7a_          13 WDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD--AVAAVAEAAGITAMPTFHVYKDGV-   89 (112)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TTHHHHHHHTCCBSSEEEEEETTE-
T ss_pred             HHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecc--ccccccccccccCCCEEEEEECCE-
Confidence            4444433 234566666564 32   223467778889988777888887643  357899999999999999998653 


Q ss_pred             CeeeecCCCChHHHHHHHHhhc
Q 006171          343 KPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       343 ~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      .-..+.|. +.+.|.+||+++.
T Consensus        90 ~v~~~~G~-~~~~l~~~i~k~~  110 (112)
T d1ep7a_          90 KADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEEEeCc-CHHHHHHHHHHHh
Confidence            22335774 8899999998863

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=0.00013  Score=63.31  Aligned_cols=99  Identities=14%  Similarity=0.200  Sum_probs=67.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eC-CCCCCcHHHHHHHHhhccCce--EEEEEecc--cc-cHhHHhhcC--CCCCC
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SK-TGERASPFVRQISRNYWAYAS--FAFVLWRE--EE-SSIWWNTFE--VESAP  332 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~-~~~~~~~~~~~~A~~~~~~~~--f~~v~~~~--~~-s~~l~~~f~--V~~~P  332 (658)
                      +++.+ +++++...   +..+|.| .+ +..+..+.++.+|..+.+...  .+.|...+  ++ ...++.+++  |.++|
T Consensus         9 L~~~n-Fd~~i~~~---~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yP   84 (122)
T d1g7ea_           9 LDTVT-FYKVIPKS---KFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYP   84 (122)
T ss_dssp             CSHHH-HHHHGGGS---SEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCE
T ss_pred             CCHHh-HHHHHhhC---CeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCC
Confidence            45555 57777543   3445544 32 122345778888888865432  34454433  32 367888865  66899


Q ss_pred             EEEEEeCCCC-CeeeecCCCChHHHHHHHHhhc
Q 006171          333 AIVFLKDPGV-KPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       333 tlvlfk~~~~-~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      ||++|+++.. .+..|.|..+.+.|.+||+++.
T Consensus        85 Ti~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          85 VFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             EEEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred             eEEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence            9999998764 4677999999999999999874

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=4e-05  Score=64.79  Aligned_cols=83  Identities=13%  Similarity=0.229  Sum_probs=59.9

Q ss_pred             CcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171          278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (658)
Q Consensus       278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~  353 (658)
                      +++.+|.|. +-|   ....+.+..++..+...+.+..+...  +.+.++.+|+|.++||+++|++| +....+.|..+.
T Consensus        20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~PT~~~~~~G-~~v~~~~G~~~~   96 (108)
T d2trxa_          20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID--QNPGTAPKYGIRGIPTLLLFKNG-EVAATKVGALSK   96 (108)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT--TCTTHHHHTTCCSSSEEEEEETT-EEEEEEESCCCH
T ss_pred             CCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeecccc--chhhHHHHhCCCcEEEEEEEECC-EEEEEEeCCCCH
Confidence            456666554 322   22345566677777777777777543  34789999999999999999875 333347899999


Q ss_pred             HHHHHHHHhh
Q 006171          354 SRLSEVMEQN  363 (658)
Q Consensus       354 ~~L~~fi~~~  363 (658)
                      +.|.+||+++
T Consensus        97 ~~l~~~i~~~  106 (108)
T d2trxa_          97 GQLKEFLDAN  106 (108)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.62  E-value=0.00022  Score=61.71  Aligned_cols=101  Identities=14%  Similarity=0.062  Sum_probs=67.6

Q ss_pred             eeccchhhhhhhhhcCCCcEEEE-EEeCC-CCCCcHHHHHHHHhh---ccCceEEEEEeccc---ccHhHHhhcCCC--C
Q 006171          261 YYTKESMGKNFLAKTGPHKVKVI-FFSKT-GERASPFVRQISRNY---WAYASFAFVLWREE---ESSIWWNTFEVE--S  330 (658)
Q Consensus       261 ~it~~~~~~~Fl~~~~~~~v~vl-~f~~~-~~~~~~~~~~~A~~~---~~~~~f~~v~~~~~---~s~~l~~~f~V~--~  330 (658)
                      .+++.+ +++.+..   ++..+| |+..- +.+-.|.+..+|..+   ...+.++.|...+-   .+.+++.+|+|.  +
T Consensus         6 ~L~~~n-Fd~~v~~---~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~   81 (122)
T d2c0ga2           6 DLDELS-FEKTVER---FPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN   81 (122)
T ss_dssp             ECCTTT-HHHHHTT---SSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTS
T ss_pred             EcChHh-HHHHHhc---CCcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCC
Confidence            355555 5776653   344444 55432 122346676666554   24566777766442   347899999995  7


Q ss_pred             CCEEEEEeCCCCCeee--ecCCCChHHHHHHHHhhcc
Q 006171          331 APAIVFLKDPGVKPVV--YYGSFNNSRLSEVMEQNKL  365 (658)
Q Consensus       331 ~Ptlvlfk~~~~~p~~--y~g~~~~~~L~~fi~~~~~  365 (658)
                      +|||++|+++...+..  |.|+.+.+.|.+||++|.-
T Consensus        82 ~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~  118 (122)
T d2c0ga2          82 FPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP  118 (122)
T ss_dssp             CCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcC
Confidence            9999999988766543  5788999999999998753

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.53  E-value=7.2e-05  Score=63.62  Aligned_cols=97  Identities=24%  Similarity=0.237  Sum_probs=66.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +.+.+.++..+... .+++.+|.|. +-   |....|.+..++..|.+.+.+..+...  +...++++|+|...||+++|
T Consensus        10 i~~~~~~~~~l~~~-~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d--~~~~l~~~~~V~~~Pt~~~~   86 (111)
T d1xwaa_          10 VKDKADLDGQLTKA-SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD--ECEDIAMEYNISSMPTFVFL   86 (111)
T ss_dssp             CCSHHHHHHHHHHH-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             ECCHHHHHHHHHhc-CCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEee--cCcchhhcCCCccccEEEEE
Confidence            44544456666544 3566666553 32   223467777788888877777776533  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. ....+.|. +...|.+||++|
T Consensus        87 ~~G~-~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          87 KNGV-KVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHHT
T ss_pred             ECCE-EEEEEeCC-CHHHHHHHHHhc
Confidence            8653 33346775 567899999986

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.43  E-value=0.00013  Score=61.10  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=63.5

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.++++++.   +++.++.| .+.+   ....|.+..++..|. ...|+.+...  +..+++++|+|.+.||+++|
T Consensus         5 i~s~~~f~~~i~~---~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-~~~~~~vd~d--~~~~~~~~~~V~~~Pt~i~~   78 (103)
T d1syra_           5 VTSQAEFDSIISQ---NELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVD--EVSEVTEKENITSMPTFKVY   78 (103)
T ss_dssp             ECSHHHHHHHHHH---CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TTHHHHHHTTCCSSSEEEEE
T ss_pred             eCCHHHHHHHHhC---CCcEEEEEeCCcccCcccccccchhhhhccc-ceEEEeeccc--cCcceeeeeeeecceEEEEE
Confidence            4444446777764   34556655 3322   223567777888774 4567776543  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      ++|. .-..+.|. +.+.|.+||++|
T Consensus        79 k~G~-~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          79 KNGS-SVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHTT
T ss_pred             ECCE-EEEEEeCc-CHHHHHHHHHhh
Confidence            9753 22346774 788999999876

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=0.00013  Score=58.68  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             cEEEEEEe----CCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171          279 KVKVIFFS----KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (658)
Q Consensus       279 ~v~vl~f~----~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~  354 (658)
                      ++.|++|.    ..+....|.+..++..+.....+..+...  +.++++++|+|.++||+++++++     .+.|..+.+
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d--~~~~la~~~~V~~~Pt~~i~~~g-----~~~G~~~~~   75 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVM--ENPQKAMEYGIMAVPTIVINGDV-----EFIGAPTKE   75 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESS--SSCCTTTSTTTCCSSEEEETTEE-----ECCSSSSSH
T ss_pred             ceEEEEEECCCCcChHhhhhhcccccccccccccccccccc--ccccccccCCceEeeEEEEECCc-----EEECCCCHH
Confidence            56676663    23445677888888887666666665432  34679999999999999887643     266888999


Q ss_pred             HHHHHHHhh
Q 006171          355 RLSEVMEQN  363 (658)
Q Consensus       355 ~L~~fi~~~  363 (658)
                      .|.+||+++
T Consensus        76 ~l~~~i~~~   84 (85)
T d1fo5a_          76 ALVEAIKKR   84 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999875

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.30  E-value=0.00014  Score=62.09  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=57.0

Q ss_pred             CCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171          276 GPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (658)
Q Consensus       276 ~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~  351 (658)
                      ..+++.+|.|. +-   |....|.+..++..+. ...|..+...  +...++.+|+|.+.||+++|+++. .-..+.| .
T Consensus        24 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d--~~~~l~~~~~I~~~Pt~~~~k~G~-~v~~~~G-~   98 (113)
T d1ti3a_          24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVD--ELKAVAEEWNVEAMPTFIFLKDGK-LVDKTVG-A   98 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETT--TCHHHHHHHHCSSTTEEEEEETTE-EEEEEEC-C
T ss_pred             cCCCEEEEEEEcCccccchhhhhhhhhhhccCC-CceEEeeeee--ccccccccCeecccceEEEEECCE-EEEEEcC-C
Confidence            45667777664 21   2234566777887774 4556666432  357899999999999999999653 2223466 5


Q ss_pred             ChHHHHHHHHhhc
Q 006171          352 NNSRLSEVMEQNK  364 (658)
Q Consensus       352 ~~~~L~~fi~~~~  364 (658)
                      +.+.|.+||++|.
T Consensus        99 ~~~~l~~~i~k~a  111 (113)
T d1ti3a_          99 DKDGLPTLVAKHA  111 (113)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7888999998863

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.29  E-value=0.00024  Score=61.42  Aligned_cols=96  Identities=14%  Similarity=0.122  Sum_probs=58.6

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe----CCCCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS----KTGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~----~~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      ++..+ ++.++... .+.+.++.|.    ..|....|.+..++.+|.+ .+.++.|..  ...++++++|+|++.||+++
T Consensus        16 v~~~~-ld~~~~~~-~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~--d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          16 VEAST-VDDWIKRV-GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL--EQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CCCC---------C-CSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECH--HHHHHHHHTTTCCSSSEEEE
T ss_pred             ecccC-HHHHHHhC-CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEEC--CCCHHHHHhcCcCcceEEEE
Confidence            34444 67777654 3345444442    2345567888889998865 455566642  22478999999999999999


Q ss_pred             EeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          337 LKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       337 fk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      |+++. ....+.|..+.+++.++|+.
T Consensus        92 ~~~G~-~v~~~~G~~~~~~l~~~i~~  116 (119)
T d2es7a1          92 FTDGK-LRGALSGIHPWAELLTLMRS  116 (119)
T ss_dssp             ESCC-----CEESCCCHHHHHHHHHH
T ss_pred             EEcCe-EEEEeeCCCCHHHHHHHHHH
Confidence            98653 33457999999999999875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00037  Score=61.34  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE----eCCCCCCcHHHHHHHHhhccC-ceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF----SKTGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f----~~~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl  336 (658)
                      ++..+ ++.++... .++++++-|    +..|....|.+..++.+|.+. +.++.|..  ..+.+|+++|+|.++||+++
T Consensus        22 ~~~~~-~d~~~~~~-~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~--d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          22 VSESR-LDDWLTQA-PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL--EQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             ECHHH-HHHHHHHC-SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECH--HHHHHHHHHHTCCSCCEEEE
T ss_pred             ccccc-HHHHHHhC-CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEe--cCCHHHHHhhccCcceeEEE
Confidence            44434 67777654 234444434    234556789999999988765 34555542  23478999999999999999


Q ss_pred             EeCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          337 LKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       337 fk~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      |+++. ....+.|..+.++|.++|+...
T Consensus        98 ~~~G~-~v~~~~G~~~~~~l~~~i~~ll  124 (132)
T d2hfda1          98 FTGGN-YRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_dssp             EETTE-EEEEECCCSCHHHHHHHHHHHH
T ss_pred             EEcCc-EeeeecCCCCHHHHHHHHHHHh
Confidence            98763 3334789999999999998643

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00034  Score=59.09  Aligned_cols=96  Identities=19%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +.+.+.+++++... .+++.|+.| .+-   |....|.+..++..|. .+.|..+...  +.++++++|+|.+.||+++|
T Consensus         6 i~s~~~f~~~l~~~-~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-~~~f~~vd~d--~~~~l~~~~~v~~~Pt~~~~   81 (107)
T d1gh2a_           6 VGSDPDFQPELSGA-GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVH--QCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             ECSGGGHHHHHHHT-TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TSHHHHHHTTCCSSSEEEEE
T ss_pred             cCCHHHHHHHHHhC-CCCEEEEEEECCCCCCccccchhhhccccccc-cccccccccc--cchhhhhhcCceeceEEEEE
Confidence            43333366677544 345556644 332   2234677777888875 4667776543  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      +++. .-..+.|. +.+.|.++|+++
T Consensus        82 ~~G~-~v~~~~G~-~~~~l~~~i~k~  105 (107)
T d1gh2a_          82 RNKV-RIDQYQGA-DAVGLEEKIKQH  105 (107)
T ss_dssp             ETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeCC-CHHHHHHHHHHh
Confidence            8763 22336774 888999999875

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.21  E-value=0.00026  Score=60.48  Aligned_cols=82  Identities=16%  Similarity=0.229  Sum_probs=56.2

Q ss_pred             CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171          277 PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (658)
Q Consensus       277 ~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~  352 (658)
                      .+++.+|.|. +-|   ....|.+..++..|. .+.|+.+..  .+...++++|+|.+.||+++|+++. ....+.|. +
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~--~~~~~l~~~~~V~~~Pt~~~~~~G~-~v~~~~G~-~  101 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDT--DELKSVASDWAIQAMPTFMFLKEGK-ILDKVVGA-K  101 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEET--TTSHHHHHHTTCCSSSEEEEEETTE-EEEEEESC-C
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhccccc-ccceeEEEe--eeceeeccccceeeeEEEEEEECCE-EEEEEeCc-C
Confidence            4567666554 322   234567777887775 355665543  3357899999999999999998663 22235674 7


Q ss_pred             hHHHHHHHHhh
Q 006171          353 NSRLSEVMEQN  363 (658)
Q Consensus       353 ~~~L~~fi~~~  363 (658)
                      .+.|.++|+++
T Consensus       102 ~~~l~~~i~k~  112 (114)
T d1xfla_         102 KDELQSTIAKH  112 (114)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88999999875

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.08  E-value=0.00065  Score=54.60  Aligned_cols=69  Identities=13%  Similarity=0.070  Sum_probs=54.3

Q ss_pred             CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171          288 TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (658)
Q Consensus       288 ~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~  363 (658)
                      .|....|.+..++..|.+.+.|+.+...  +..+++++|+|.+.||+++++    + ..+.|..+.+.|.+||+++
T Consensus        15 ~C~~~~p~~~~l~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~~~~----~-~~~~G~~~~~~l~~~i~~~   83 (85)
T d1nhoa_          15 YCPMAIEVVDEAKKEFGDKIDVEKIDIM--VDREKAIEYGLMAVPAIAING----V-VRFVGAPSREELFEAINDE   83 (85)
T ss_dssp             CSTTHHHHHHHHHHHHCSSCCEEEECTT--TCGGGGGGTCSSCSSEEEETT----T-EEEECSSCCHHHHHHHHHH
T ss_pred             chHHHHHHHhhhcccccccccccccccc--cchhhHHhcCceEeCEEEECC----c-EEEEcCCCHHHHHHHHHHh
Confidence            3445678888899999888888887543  357899999999999987732    1 2478999999999999875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.07  E-value=0.00067  Score=57.78  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             CCcceeeccchhhhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCC
Q 006171          256 LPRIFYYTKESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESA  331 (658)
Q Consensus       256 lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~  331 (658)
                      .|++..+++.+.++++++.   +++.++.|. +-   |....|.+..++..|. .+.|+.|...+  .++++++|+|.+.
T Consensus         7 ~p~vi~i~s~~~~~~~~~~---~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~V~~~   80 (113)
T d1r26a_           7 YPSVVDVYSVEQFRNIMSE---DILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN--NSEIVSKCRVLQL   80 (113)
T ss_dssp             CSCCEEECCHHHHHHHHHS---SSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSS
T ss_pred             CCceEEeCCHHHHHHHHcC---CCeEEEEEECCCCccchhhceeccccccccc-ccccccccccc--chhhHHHccccCC
Confidence            5655445554546777753   446666554 32   2335677788888874 67788876433  5789999999999


Q ss_pred             CEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ||+++|++|.. -..+.|. +.+.+.+.+++
T Consensus        81 Pt~~~~~~G~~-v~~~~G~-~~~~l~~~l~~  109 (113)
T d1r26a_          81 PTFIIARSGKM-LGHVIGA-NPGMLRQKLRD  109 (113)
T ss_dssp             SEEEEEETTEE-EEEEESS-CHHHHHHHHHH
T ss_pred             CEEEEEECCEE-EEEEeCC-CHHHHHHHHHH
Confidence            99999997632 2235674 55666665543

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.04  E-value=0.00063  Score=57.83  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=63.2

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      ++.++ +.+++... .+++.++.|. +.+   ....|.+..++..|. .+.|..+... .++++++++|+|.+.||+++|
T Consensus        11 ~~~d~-f~~~l~~~-~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-~v~~~~vd~~-~~~~~l~~~~~V~~~Pt~~~~   86 (112)
T d1f9ma_          11 VNKDT-FWPIVKAA-GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCN-QENKTLAKELGIRVVPTFKIL   86 (112)
T ss_dssp             ECTTT-HHHHHHTC-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECS-STTHHHHHHHCCSSSSEEEEE
T ss_pred             eCHHH-HHHHHHHc-CCCEEEEEEEcCCCcchHHHHHHHhhhccccc-cceeeccccc-ccchhhHhheeeccCCEEEEE
Confidence            44444 56666543 3456666554 322   223567777888875 4556666432 235789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHhhc
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~~~  364 (658)
                      +++. .-..+.|. +...+.++|++.+
T Consensus        87 k~G~-~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          87 KENS-VVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             ETTE-EEEEEESS-CHHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeCC-CHHHHHHHHHHcc
Confidence            8653 22336786 6678888887653

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.01  E-value=0.00013  Score=66.78  Aligned_cols=68  Identities=10%  Similarity=0.010  Sum_probs=49.0

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g  226 (658)
                      .++..++.|+++||++|++..|...++++... ...+..|+.++++   ...+++...   ....+|+++++...
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~---~~~~~~~~~---~~~~~p~~~~~d~~  120 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAE---DDLRQRLAL---ERIAIPLVLVLDEE  120 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHH---HHTTTTTTC---SSCCSSEEEEECTT
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCH---HHHHHHHHh---ccccccceeecCcc
Confidence            45677888999999999999999999998765 4466667777443   355665311   04577887776544

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00064  Score=56.89  Aligned_cols=95  Identities=21%  Similarity=0.249  Sum_probs=62.3

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.+++.+... .+++.++.|. +-+   ....|.+..++..|. ...|+.+...  ++++++.+|+|.+.||+++|
T Consensus         5 i~s~~~f~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~d--~~~~~~~~~~V~~~Pt~~~~   80 (105)
T d2ifqa1           5 IESKTAFQEALDAA-GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD--DCQDVASECEVKCMPTFQFF   80 (105)
T ss_dssp             ECSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TCHHHHHHTTCCBSSEEEEE
T ss_pred             cCCHHHHHHHHHhC-CCCEEEEEEEcCCccchhhhhhhhhhhccccc-cceeeecccc--cCHhHHHHcCceEEEEEEEE
Confidence            33433356666544 3456666553 322   223566677777764 4557666533  35789999999999999999


Q ss_pred             eCCCCCeeeecCCCChHHHHHHHHh
Q 006171          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       338 k~~~~~p~~y~g~~~~~~L~~fi~~  362 (658)
                      ++|. ....+.|. +.+.|.++|++
T Consensus        81 ~~G~-~v~~~~G~-~~~~l~~~i~~  103 (105)
T d2ifqa1          81 KKGQ-KVGEFSGA-NKEKLEATINE  103 (105)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHH
T ss_pred             ECCE-EEEEEeCC-CHHHHHHHHHh
Confidence            8753 33346775 78889999875

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00035  Score=61.89  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=52.9

Q ss_pred             hhhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171          267 MGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (658)
Q Consensus       267 ~~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~  341 (658)
                      .+++.+... ++++.||.|. +.   |....|.+..+|..|.+.+.|+.|...+  .++++++|+|.+.||+++|+++.
T Consensus        12 ~~dq~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~--~~~la~~~~I~~~PT~~~f~~g~   87 (137)
T d1qgva_          12 QVDQAILSE-EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELYDPCTVMFFFRNK   87 (137)
T ss_dssp             HHHHHHHTC-SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTSSCSCSSCEEEEEETTE
T ss_pred             HHHHHHHhC-CCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccc--cchhhhhcCeeeEEEEEEEeCCc
Confidence            366666543 4567677664 22   2335678888999998888888886533  47899999999999999999774

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.0021  Score=55.64  Aligned_cols=99  Identities=16%  Similarity=0.121  Sum_probs=62.2

Q ss_pred             EEEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccccC
Q 006171          399 VILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCG  478 (658)
Q Consensus       399 Vi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~  478 (658)
                      ++++.+++++.++.+..++++|+                      +|+++ +.|+|+|.+...+.++.|...        
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~vAk----------------------~fkgk-i~Fv~~D~~~~~~~l~~fgl~--------   69 (125)
T d2b5ea3          21 GYLFYNDEEELEEYKPLFTELAK----------------------KNRGL-MNFVSIDARKFGRHAGNLNMK--------   69 (125)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH----------------------HTTTT-CEEEEEEHHHHTTHHHHTTCC--------
T ss_pred             EEEEeCChHHHHHHHHHHHHHHH----------------------HhcCe-eEEEEEchHHhHHHHHHcCCC--------
Confidence            45555666677888888888888                      77765 999999998777777776222        


Q ss_pred             CcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171          479 ARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ  549 (658)
Q Consensus       479 ~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~  549 (658)
                           ++.|.++|+    +.... .||.      +   +....+  ........++-+.+.|.+|+++++.
T Consensus        70 -----e~~P~~~i~----~~~~~-~ky~------~---~~~~~~--~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          70 -----EQFPLFAIH----DMTED-LKYG------L---PQLSEE--AFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             -----SCSSEEEEE----ETTTT-EEEE------C---CCCCHH--HHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             -----ccCCcEEEE----ecccC-cccc------c---chhhhh--hcccccccccCCHHHHHHHHHHHHc
Confidence                 246999988    44332 3444      1   110000  0000011234467999999999998

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.75  E-value=0.0015  Score=54.51  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=53.0

Q ss_pred             CcEEEEEE-eCCC-CC--CcHHHHHHHHh----hccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecC
Q 006171          278 HKVKVIFF-SKTG-ER--ASPFVRQISRN----YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYG  349 (658)
Q Consensus       278 ~~v~vl~f-~~~~-~~--~~~~~~~~A~~----~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g  349 (658)
                      ..+.++.| ++.| .|  ..|.+..+|..    +...+.+..+..  .+.++++++|+|.+.||+++++++.. -..+.|
T Consensus        15 ~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~--~~~~~l~~~~~V~~vPTi~i~~~G~~-~~~~~G   91 (107)
T d1a8la2          15 QDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA--IEYPEWADQYNVMAVPKIVIQVNGED-RVEFEG   91 (107)
T ss_dssp             SCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG--GGCHHHHHHTTCCSSCEEEEEETTEE-EEEEES
T ss_pred             CCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecc--ccccccccccccccceEEEEEeCCeE-EEEEEC
Confidence            44556545 4322 22  34555555432    333344444432  23578999999999999999987643 345789


Q ss_pred             CCChHHHHHHHHh
Q 006171          350 SFNNSRLSEVMEQ  362 (658)
Q Consensus       350 ~~~~~~L~~fi~~  362 (658)
                      ..+.+.|.++|.+
T Consensus        92 ~~~~~~~~~~i~~  104 (107)
T d1a8la2          92 AYPEKMFLEKLLS  104 (107)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999876

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.71  E-value=0.00061  Score=58.00  Aligned_cols=88  Identities=15%  Similarity=0.203  Sum_probs=57.6

Q ss_pred             hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccc----cHhHHhhcCCCCCCEEEEEeC
Q 006171          268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEE----SSIWWNTFEVESAPAIVFLKD  339 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~----s~~l~~~f~V~~~Ptlvlfk~  339 (658)
                      +.+.+..   ++..+++|+ +.|   ....|.+..++..+...+  .++.+....    ...++++|+|.+.||+++|++
T Consensus        19 ~~~~i~~---~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v--~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~   93 (115)
T d1zmaa1          19 AQEALDK---KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHI--YFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITD   93 (115)
T ss_dssp             HHHHHHT---TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCC--EEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEET
T ss_pred             HHHHHhc---CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhh--hhheeecccccccccccccccccccccEEEEEEC
Confidence            4555542   334566664 322   234577777777775444  344332221    146899999999999999997


Q ss_pred             CCCCeeeecCCCChHHHHHHHH
Q 006171          340 PGVKPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       340 ~~~~p~~y~g~~~~~~L~~fi~  361 (658)
                      +. ....+.|.++.++|.+|+.
T Consensus        94 gk-~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          94 GQ-INVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             TE-EEEECCTTCCHHHHHHHHT
T ss_pred             CE-EEEEEcCCCCHHHHHHHHc
Confidence            53 4556899999999999984

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0013  Score=56.41  Aligned_cols=91  Identities=14%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             hhhhhhhcCCCcEEEEEEeCC-----------CCCCcHHHHHHHHhhccCceEEEEEeccc-----ccHhHHhhcCCCCC
Q 006171          268 GKNFLAKTGPHKVKVIFFSKT-----------GERASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVESA  331 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~~-----------~~~~~~~~~~~A~~~~~~~~f~~v~~~~~-----~s~~l~~~f~V~~~  331 (658)
                      +.+.+... .+++++|+|..+           |....|.+..++..+.+.+.|+.|.+.+.     ....++++|+|.+.
T Consensus        12 ~~~~l~~~-~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~i   90 (119)
T d1woua_          12 FHRAVEQH-NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAV   90 (119)
T ss_dssp             HHHHHHTT-TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSS
T ss_pred             HHHHHHHc-CCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEE
Confidence            45555443 456777777432           12245777778888887788888876431     23568999999999


Q ss_pred             CEEEEEeCCCCCeeeecCCCChHHHHHHHH
Q 006171          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~  361 (658)
                      ||+++|+++. +-..+.+ .+.+.+..|++
T Consensus        91 PT~i~~~~g~-~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          91 PTLLKYGTPQ-KLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             SEEEETTSSC-EEEGGGG-GCHHHHHHHHH
T ss_pred             EEEEEEECCe-EEeeeec-CCHHHHHHHhc
Confidence            9999998653 2222222 24555666664

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.21  E-value=0.0013  Score=57.42  Aligned_cols=106  Identities=14%  Similarity=0.186  Sum_probs=80.1

Q ss_pred             EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (658)
Q Consensus       138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y  217 (658)
                      |-++|.+||....+...+.++.|+++- .....+...+.++|+++++.+.++.||.+++.   ...+.+|+.    -..+
T Consensus         8 v~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~---~~l~~~gl~----~~~~   79 (133)
T d2djka1           8 IGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFG---AHAGNLNLK----TDKF   79 (133)
T ss_dssp             SEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG---GGTTTTTCC----SSSS
T ss_pred             eeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhH---HHHHHhcCC----cccC
Confidence            456888999888888888888888754 35677888999999999999999999988543   366777744    4689


Q ss_pred             eEEEEcCCCCCCCCCcccc--cCCCCHhHHHHHHHHhhc
Q 006171          218 PSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATAIL  254 (658)
Q Consensus       218 PTl~~f~~g~~~~~~~~~Y--~G~rs~~~Lv~fv~k~v~  254 (658)
                      |.++++.....   ....|  .+..+.++|.+|+.+.+.
T Consensus        80 P~~~i~~~~~~---~~~~~~~~~~i~~~~i~~Fi~d~~~  115 (133)
T d2djka1          80 PAFAIQEVAKN---QKFPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             SEEEEECTTTC---CBCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCC---ceecCCccccCCHHHHHHHHHHHHc
Confidence            99998864432   11233  467899999999988643

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0027  Score=56.88  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=58.5

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-------------------------------------ceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-------------------------------------NTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-------------------------------------~vg~Vdc~  194 (658)
                      +.+.++|.|.-+-|++|+++.|..+++...--...                                     .+..-.|+
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD  104 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhc
Confidence            56789999999999999999999888754210000                                     00111122


Q ss_pred             c-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171          195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       195 e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      . -.....+++++|      |+|.||++ +.+|       ..+.|.++.+.|..++.+.
T Consensus       105 ~~i~~~~~la~~lg------v~GTPt~~-~~nG-------~~v~G~~~~e~l~~~i~~~  149 (156)
T d1eeja1         105 VDIADHYALGVQLG------VSGTPAVV-LSNG-------TLVPGYQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCHHHHHHHHHHHT------CCSSSEEE-CTTS-------CEEESCCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHcC------CcCCCEEE-EeCC-------eEecCCCCHHHHHHHHHHH
Confidence            1 112234788888      88999965 4555       3458999999999998765

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0038  Score=52.69  Aligned_cols=99  Identities=16%  Similarity=0.222  Sum_probs=72.9

Q ss_pred             CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (658)
Q Consensus       144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f  223 (658)
                      +..++++.++++.+|=|..+--+   .....|.++|+.+.+ ..+|.+...   .   ++++++      +.. |+|++|
T Consensus         9 ~~~e~f~~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~d-~~F~~t~~~---~---v~~~~~------v~~-~~Ivl~   71 (110)
T d1bjxa_           9 AAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAIDD-IPFGITSNS---D---VFSKYQ------LDK-DGVVLF   71 (110)
T ss_dssp             HHHHHHHHHSSEEEEEECTTTTS---HHHHHHHHHHHHCSS-SCEEEECCS---H---HHHHTT------CSS-CEEEEE
T ss_pred             HHHHHHhccCCeEEEEEEcCCCc---hHHHHHHHHHHhCcC-ceEEEECCH---H---HHHHcC------CCC-CeEEEe
Confidence            34555666788888988875332   345689999999854 578877655   3   778888      655 999999


Q ss_pred             CCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeecc
Q 006171          224 PPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTK  264 (658)
Q Consensus       224 ~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~  264 (658)
                      ++...   ....|.|..+.++|.+|+...  .+|-+..++.
T Consensus        72 k~~de---~~~~~~~~~~~~~l~~fi~~~--~~PlV~e~~~  107 (110)
T d1bjxa_          72 KKFDE---GRNNFEGEVTKENLLDFIKHN--QLPLVIEFTE  107 (110)
T ss_dssp             ESSSS---SBCCCCSCCCHHHHHHHHHHH--SSCCCSSCCC
T ss_pred             ccCCc---cccccCCCCCHHHHHHHHHHc--CcCcEEecCC
Confidence            98654   345678999999999999887  4676555443

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.64  E-value=0.0035  Score=55.96  Aligned_cols=43  Identities=14%  Similarity=0.206  Sum_probs=34.5

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~  194 (658)
                      .++++++.|| +.||++|..-.|.+.++...++... .+..|..+
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d   73 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD   73 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESS
T ss_pred             CCCEEEEEecccccCCchhhhhhhhhccccccccccccccccccc
Confidence            5788999999 9999999998899988888887654 56666544

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.56  E-value=0.014  Score=52.58  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=36.9

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~  194 (658)
                      .++++++.|| +.||+.|..-.|.+.+...+++... .+..|+.+
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d   76 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCD   76 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCC
Confidence            4668999999 9999999999999999999998754 67777765

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.44  E-value=0.015  Score=47.38  Aligned_cols=61  Identities=10%  Similarity=0.023  Sum_probs=44.2

Q ss_pred             cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHH
Q 006171          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (658)
Q Consensus       293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~  361 (658)
                      .|.+..+|..+ ..+.|..+...  +.++++++|+|.++||+++  + + ++ ++.|.++.+.|.++++
T Consensus        34 ~p~~~~~a~~~-~~i~~~~vd~~--~~~~l~~~~~I~~vPt~~~--n-g-~~-~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          34 VQALNLMAVLN-PRIKHTAIDGG--TFQNEITERNVMGVPAVFV--N-G-KE-FGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             HHHHHHHHHHC-TTEEEEEEETT--TCHHHHHHTTCCSSSEEEE--T-T-EE-EEESCCCHHHHHHHHC
T ss_pred             HHHHHHHHHhC-CceEEEEEecc--cchHHHhhcccccccEEEE--C-C-EE-EEecCCCHHHHHHHHh
Confidence            56677777654 45666666432  3578999999999999865  2 2 33 4889999999988875

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0028  Score=54.84  Aligned_cols=103  Identities=11%  Similarity=0.064  Sum_probs=74.8

Q ss_pred             ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (658)
Q Consensus       141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl  220 (658)
                      ++.+||.+.+.++.|.++.||.+--. -..+.+.+.++|+.++|.+.++.+|.+++   ....+.+|+.     ...|.+
T Consensus         5 i~~~~~~~y~~~~~Pl~~~f~~~~~~-~~~~~~~~~~vAk~fkgki~Fv~~D~~~~---~~~l~~fgl~-----e~~P~~   75 (125)
T d2b5ea3           5 IDGSVFAQYVESGLPLGYLFYNDEEE-LEEYKPLFTELAKKNRGLMNFVSIDARKF---GRHAGNLNMK-----EQFPLF   75 (125)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEESSHHH-HHHHHHHHHHHHHHTTTTCEEEEEEHHHH---TTHHHHTTCC-----SCSSEE
T ss_pred             cCHHHHHHHHhcCCCEEEEEeCChHH-HHHHHHHHHHHHHHhcCeeEEEEEchHHh---HHHHHHcCCC-----ccCCcE
Confidence            77888888888889999999986432 34688899999999999999999998844   3467888843     358998


Q ss_pred             EEcCCCCCCCCC----------cccccCCCCHhHHHHHHHHh
Q 006171          221 VAFPPGCKSSDC----------MTRFEGELSVDAVTDWFATA  252 (658)
Q Consensus       221 ~~f~~g~~~~~~----------~~~Y~G~rs~~~Lv~fv~k~  252 (658)
                      .+........-.          +....++.+.++|.+|+.+.
T Consensus        76 ~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~  117 (125)
T d2b5ea3          76 AIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDF  117 (125)
T ss_dssp             EEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHH
T ss_pred             EEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHH
Confidence            886543210000          00114678999999998876

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0061  Score=54.50  Aligned_cols=56  Identities=7%  Similarity=0.062  Sum_probs=43.1

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .+.++++.|| +.||+.|..-.+.+.+...+++..+.+..|+-+......+++++++
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~   88 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQN   88 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHT
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccC
Confidence            4455556667 8899999999999999999997666666777775555566888876

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.85  E-value=0.021  Score=51.34  Aligned_cols=42  Identities=14%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG  194 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~  194 (658)
                      ++.+++.|| +.||+.|..-.+.+.+...+++..+ .+..|..+
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d   87 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSID   87 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             CCeEEEEEecCCCCccccccccccccccccccccCcceeecccc
Confidence            567788888 9999999999999999999998754 66677665

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.018  Score=48.20  Aligned_cols=43  Identities=16%  Similarity=0.276  Sum_probs=34.0

Q ss_pred             HhHHhhcCCCCCCEEEEEeCCCCCee--eecCCCChHHHHHHHHh
Q 006171          320 SIWWNTFEVESAPAIVFLKDPGVKPV--VYYGSFNNSRLSEVMEQ  362 (658)
Q Consensus       320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~--~y~g~~~~~~L~~fi~~  362 (658)
                      ..++++|+|.++||+++|..++..-.  .+.|.++.+.|.+++++
T Consensus        72 ~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          72 VALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHhhhehhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            67999999999999999976543221  25788899999999875

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.93  E-value=0.048  Score=45.08  Aligned_cols=88  Identities=9%  Similarity=0.038  Sum_probs=67.2

Q ss_pred             CCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171          146 FPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (658)
Q Consensus       146 F~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~  224 (658)
                      .+..+. .+++.+|=|+.+--+   .....|.++|..+.+...+|.+...   .   ++++++      |+ .|+|++|+
T Consensus        10 ~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd~~~F~~t~d~---~---va~~~~------v~-~~~vvlfr   73 (102)
T d1a8ya2          10 LQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATFDS---K---VAKKLT------LK-LNEIDFYE   73 (102)
T ss_dssp             HHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHTTTSCEEEECCH---H---HHHHHC------CC-TTCEEEEC
T ss_pred             HHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcCCCceEEEECCH---H---HHHHcC------CC-CCCEEEee
Confidence            444554 567888888865332   3567899999999888899988765   3   888888      74 69999999


Q ss_pred             CCCCCCCCcccccCC-CCHhHHHHHHHHh
Q 006171          225 PGCKSSDCMTRFEGE-LSVDAVTDWFATA  252 (658)
Q Consensus       225 ~g~~~~~~~~~Y~G~-rs~~~Lv~fv~k~  252 (658)
                      +-..   ....|.|. .+.++|.+|+..+
T Consensus        74 ~fde---~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          74 AFME---EPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             TTCS---SEEECSSSSCCHHHHHHHHHHT
T ss_pred             ecCC---CceecCCCCCCHHHHHHHHHHh
Confidence            8654   35788885 8999999999765

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.84  E-value=0.024  Score=53.49  Aligned_cols=99  Identities=9%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             eccchhhhhhhhhcCCCcEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171          262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (658)
Q Consensus       262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf  337 (658)
                      +++.+.+...+.....+.++||.| .+.+   ....+.+..+|..|. .+.|..+....+   .+..+|+|...|||++|
T Consensus       104 i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-~vkF~ki~~~~~---~~~~~~~i~~lPtl~~y  179 (217)
T d2trcp_         104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRASNT---GAGDRFSSDVLPTLLVY  179 (217)
T ss_dssp             CCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHHHH---TCSTTSCGGGCSEEEEE
T ss_pred             cCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-cceEEEEccccc---hhHHhCCCCCCCeEEEE
Confidence            444332344444444455666644 4322   224577777888874 578888864332   35689999999999999


Q ss_pred             eCCCCCeeeecC-------CCChHHHHHHHHhhcc
Q 006171          338 KDPGVKPVVYYG-------SFNNSRLSEVMEQNKL  365 (658)
Q Consensus       338 k~~~~~p~~y~g-------~~~~~~L~~fi~~~~~  365 (658)
                      +++..... +-|       .++..+|..|+.++..
T Consensus       180 k~G~~v~~-~vg~~~~~g~~~~~~~lE~~L~~~g~  213 (217)
T d2trcp_         180 KGGELISN-FISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             ETTEEEEE-ETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             ECCEEEEE-EECccccccccCCHHHHHHHHHHcCC
Confidence            98743211 211       3577889999887543

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.46  E-value=0.026  Score=49.85  Aligned_cols=86  Identities=16%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-c------------------------------------eeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-N------------------------------------TGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~------------------------------------vg~Vdc~  194 (658)
                      +.+..++.|.-+-|++|+++.|+-+++.+.-.... .                                    .....|.
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~  104 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP  104 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhh
Confidence            46678999999999999999998887764311000 0                                    1111122


Q ss_pred             c-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171          195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       195 e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                      + -.....+++++|      |+|.||+++ .+|.       ...|..+.+.|.+.+.+
T Consensus       105 ~~i~~~~~la~~lG------v~GTPt~~~-~nG~-------~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         105 NIVKKHYELGIQFG------VRGTPSIVT-STGE-------LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             SHHHHHHHHHHHHT------CCSSCEEEC-TTSC-------CCCSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcC------cCCCCEEEE-cCCc-------EecCCCCHHHHHHHHHh
Confidence            1 112334778888      899999775 4453       34898999999988765

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=93.31  E-value=0.058  Score=48.43  Aligned_cols=54  Identities=17%  Similarity=0.100  Sum_probs=41.7

Q ss_pred             CCcEEEEEec-cCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhC
Q 006171          153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERK  206 (658)
Q Consensus       153 ~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~  206 (658)
                      ++.+++.||. .||+.|..-.+.+.++..+++... .|..|.++........++++
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~   86 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENS   86 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhh
Confidence            5678889995 499999999999999999998765 77888888543333455554

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.18  Score=44.09  Aligned_cols=62  Identities=13%  Similarity=0.159  Sum_probs=39.8

Q ss_pred             cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHH----HHHHHHhhccC
Q 006171          305 AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR----LSEVMEQNKLQ  366 (658)
Q Consensus       305 ~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~----L~~fi~~~~~~  366 (658)
                      ++..+..+...+.+...+.++|+|.++|+++++.+.+.+.+...|.++.+.    |.+|+..|..+
T Consensus        76 ~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl~~~~~~  141 (147)
T d2dlxa1          76 EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQL  141 (147)
T ss_dssp             HTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHTCSC
T ss_pred             hheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEecccCCCCHHHHHHHHHHHHhhCCCC
Confidence            344455555444445779999999999999999764334343445566544    45677766433

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.03  E-value=0.22  Score=41.10  Aligned_cols=97  Identities=15%  Similarity=0.356  Sum_probs=57.1

Q ss_pred             EEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCC-CcEEEEEEeccchHHHHHHHcccCCcc
Q 006171          397 YCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRYCSFYLFSETSF  474 (658)
Q Consensus       397 lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~v~F~wvd~~~q~~~~~~f~~~~~~~  474 (658)
                      +.+++|.. .+++-.++.+.++++|+                      .++. ..++|+|||=+.-+-.+.+.-...+. 
T Consensus        21 ~~IvAFaee~d~dG~eFl~ilk~vA~----------------------~nt~n~~LsivWIDPD~FPlm~~yWe~tF~I-   77 (119)
T d1a8ya3          21 IHIVAFAEEADPDGYEFLEILKSVAQ----------------------DNTDNPDLSIIWIDPDDFPLLVPYWEKTFDI-   77 (119)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHH----------------------HSTTCSSCCEEEECGGGCTTTHHHHHHHHTC-
T ss_pred             ceEEEEecCCCccHHHHHHHHHHHHH----------------------HcCcCCCceEEEECCcccchHHHHHHHhcCC-
Confidence            55666665 56666777888888888                      3332 45999999987655444444222222 


Q ss_pred             cccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHh
Q 006171          475 ETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII  548 (658)
Q Consensus       475 ~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~  548 (658)
                             +.. .|.|=|+    |.+.  ....   |  ++. ++.+.         .+   +.+++++||.+|+
T Consensus        78 -------Dl~-~PqIGVV----dv~d--adSv---W--~~~-~~~~d---------~~---t~~~Le~WiedVl  119 (119)
T d1a8ya3          78 -------DLS-APQIGVV----NVTD--ADSV---W--MEM-DDEED---------LP---SAEELEDWLEDVL  119 (119)
T ss_dssp             -------CTT-SCEEEEE----ETTT--CCEE---E--CC-----------------C---CHHHHHHHHHHHC
T ss_pred             -------CCC-CCceeeE----eccc--Ccce---e--eec-ccccc---------cc---cHHHHHHHHHHhC
Confidence                   332 3999999    6554  2222   6  411 11111         11   5689999999885

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.71  E-value=0.058  Score=42.14  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=52.5

Q ss_pred             EEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccccc
Q 006171          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE  237 (658)
Q Consensus       158 V~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~  237 (658)
                      |+.+.+.|..|.++...-+++++++.=...+-+|.     ...++. +||      |.+.|.+++  +|.      ..+.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~-----d~~ei~-~yg------VmstPalvI--dg~------vv~~   63 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK-----EMDQIL-EAG------LTALPGLAV--DGE------LKIM   63 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-----SHHHHH-HHT------CSSSSCEEE--TTE------EEEC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEeC-----CHHHHH-HcC------CcCCCEEEE--CCE------EEEE
Confidence            66779999999999999999998874223555553     223355 578      889999886  342      4567


Q ss_pred             CCC-CHhHHHHHH
Q 006171          238 GEL-SVDAVTDWF  249 (658)
Q Consensus       238 G~r-s~~~Lv~fv  249 (658)
                      |.. +.+.|.+|+
T Consensus        64 G~vPs~~ei~~~L   76 (77)
T d1iloa_          64 GRVASKEEIKKIL   76 (77)
T ss_dssp             SSCCCHHHHHHHC
T ss_pred             ecCCCHHHHHHHh
Confidence            754 899998875

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=91.88  E-value=0.041  Score=42.28  Aligned_cols=54  Identities=9%  Similarity=-0.056  Sum_probs=37.7

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ++.|..|||++|.+..-..++.      .+.+-.+|.+++.....+.++.|      .+++|++.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g------~~tvP~i~i   56 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALG------YVQAPVVEV   56 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CBCCCEEEE
T ss_pred             EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhC------CCCcCEEEE
Confidence            4567779999998765433321      23777888887666566777777      789998764

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=91.82  E-value=0.086  Score=47.39  Aligned_cols=54  Identities=9%  Similarity=0.065  Sum_probs=41.2

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhC
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERK  206 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~  206 (658)
                      ++++++.|| +.||+.|..-.+.+++...+++... .|..|.++........+++.
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~   88 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTP   88 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSC
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhh
Confidence            457888889 9999999999999999999998765 78888887443333344443

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.043  Score=42.46  Aligned_cols=54  Identities=15%  Similarity=0.157  Sum_probs=36.9

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ++.|..|||++|.+.....++.      .+.+-.+|.+++.......+..|      .+.+|+|++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g------~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQG------FRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcC------CCCCCEEEE
Confidence            4566779999998765433321      13777888887665555556667      779999876

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.86  E-value=0.11  Score=43.98  Aligned_cols=88  Identities=16%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             CCcEEEEEec--cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCC
Q 006171          153 SKPWLIQVYS--DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (658)
Q Consensus       153 ~~~~lV~FYa--pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~  230 (658)
                      .+++-+.+|.  +-|..|..+....+++|. +.+.+.+-..+-+.. ....++++++      |...||+.++.+|..  
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSdki~~~~~~~~~~-e~~~~~~~~~------ver~Ps~~i~~~g~~--   90 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTDKLSYEIVDFDTP-EGKELAKRYR------IDRAPATTITQDGKD--   90 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCTTEEEEEEETTSH-HHHHHHHHTT------CCSSSEEEEEETTBC--
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHh-hCCCeEEEEeccCcc-hhhhHHHhhc------cccCceEEEecCCcc--
Confidence            3455455554  468899888877777765 334455555554422 2345889999      889999999987643  


Q ss_pred             CCcccccCCCCHhHHHHHHHH
Q 006171          231 DCMTRFEGELSVDAVTDWFAT  251 (658)
Q Consensus       231 ~~~~~Y~G~rs~~~Lv~fv~k  251 (658)
                       ....|.|--.=..+..|+..
T Consensus        91 -~gIrF~GiP~GhEf~Slila  110 (119)
T d1a8la1          91 -FGVRYFGLPAGHEFAAFLED  110 (119)
T ss_dssp             -CSEEEESCCCTTHHHHHHHH
T ss_pred             -cceEEEeccCchhHHHHHHH
Confidence             35788886655556666543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.85  E-value=0.15  Score=48.42  Aligned_cols=99  Identities=9%  Similarity=-0.005  Sum_probs=61.4

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccch------------------------hhhHHHhh
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIR------------------------LATHLAER  205 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~------------------------~~~~Lc~k  205 (658)
                      .++.+++.|| ++||+.|..-.+.+.+.+.+++..+ .+..|.++...                        ....+++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            4567777888 9999999998889999989887654 67777665211                        12346677


Q ss_pred             CCCCc-ccceeeeeEEEEcCCCCCCCCCcccc--cCCCCHhHHHHHHHH
Q 006171          206 KPIGQ-IFFRRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFAT  251 (658)
Q Consensus       206 ~~i~k-~f~V~~yPTl~~f~~g~~~~~~~~~Y--~G~rs~~~Lv~fv~k  251 (658)
                      ||+-. .......|+..++-+.+.- .....|  .-.|++++|+..+..
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~I-r~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVI-RTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBE-EEEEECCTTBCCCHHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHH
Confidence            76310 0001356877777544330 011122  235789999888754

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.07  Score=47.62  Aligned_cols=42  Identities=10%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecc
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~  194 (658)
                      .++++++.|| +.||+.|..-.|.+++.+.+..+ ..+..|..+
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d   85 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN-TVVLCISAD   85 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT-EEEEEEESS
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhcc-ceeeeEEcC
Confidence            3567888887 77999999999999999887754 356666666

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.75  E-value=0.13  Score=45.46  Aligned_cols=53  Identities=13%  Similarity=0.108  Sum_probs=41.6

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhh
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAER  205 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k  205 (658)
                      ++++++.|| +.||+.|..-.+.+.+...++.... .+..|..+........|++
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~   80 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT   80 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence            578999999 9999999999999999999997765 7777887744333445554

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.27  E-value=1.7  Score=36.20  Aligned_cols=91  Identities=20%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             hhhhhcCCCcEEEEEEeCCCCCC-cHHHHHHHHh---hccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCee
Q 006171          270 NFLAKTGPHKVKVIFFSKTGERA-SPFVRQISRN---YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV  345 (658)
Q Consensus       270 ~Fl~~~~~~~v~vl~f~~~~~~~-~~~~~~~A~~---~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~  345 (658)
                      .+++.- .+.|.+++|.+..++. ....+.+...   ..+++.+........+..+++++|+|+..|+++++.++....+
T Consensus        15 ~~~~~l-~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gI   93 (119)
T d1a8la1          15 EFFSKM-VNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGV   93 (119)
T ss_dssp             HTGGGC-CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSE
T ss_pred             HHHHhC-CCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccce
Confidence            344433 3456677775432222 2233333322   2345555444433333467999999999999999988766667


Q ss_pred             eecCCCChHHHHHHHH
Q 006171          346 VYYGSFNNSRLSEVME  361 (658)
Q Consensus       346 ~y~g~~~~~~L~~fi~  361 (658)
                      .|.|--.-.++..||.
T Consensus        94 rF~GiP~GhEf~Slil  109 (119)
T d1a8la1          94 RYFGLPAGHEFAAFLE  109 (119)
T ss_dssp             EEESCCCTTHHHHHHH
T ss_pred             EEEeccCchhHHHHHH
Confidence            8888655555666554

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=89.04  E-value=0.17  Score=44.92  Aligned_cols=55  Identities=13%  Similarity=0.087  Sum_probs=40.0

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .++++++.|| +.||+.|..-.+.+++...++++ ..+..|.++......+.+++++
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~   96 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEG   96 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhC
Confidence            3567888888 66888899999999999888875 4677777774333344555555

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.13  Score=46.89  Aligned_cols=43  Identities=9%  Similarity=-0.174  Sum_probs=34.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~  194 (658)
                      .++++||-+.|.|||.|.+--|..+++.+++++.+ .|-.+-|+
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n   66 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   66 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence            58999999999999999987778888888887654 56666665

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=88.62  E-value=0.17  Score=45.35  Aligned_cols=53  Identities=11%  Similarity=-0.006  Sum_probs=41.5

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhh
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAER  205 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k  205 (658)
                      +++++|.|| +.||+.|..-.+.+++.+.+++..+ .|..|.++........+++
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~   81 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKT   81 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhh
Confidence            467888999 8999999999999999999998765 8888888843333334443

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.98  E-value=0.062  Score=47.07  Aligned_cols=54  Identities=11%  Similarity=0.030  Sum_probs=39.6

Q ss_pred             CcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCC
Q 006171          154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       154 ~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      +++++.|| +.||+.|..-.+.+.+..+++.... .|..|+++........+++++
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~   85 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSG   85 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHT
T ss_pred             CcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhc
Confidence            44455444 8999999988888888888887654 788888885545556777765

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.44  E-value=0.18  Score=46.23  Aligned_cols=53  Identities=9%  Similarity=0.058  Sum_probs=41.5

Q ss_pred             CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhh
Q 006171          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAER  205 (658)
Q Consensus       153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k  205 (658)
                      ++++++.|| ++||+.|..-.+.+.++.++++... .|..|+++........+++
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~   87 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSI   87 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHS
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhh
Confidence            578889999 9999999999999999999998765 8888888744333334433

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.27  E-value=0.24  Score=44.06  Aligned_cols=30  Identities=13%  Similarity=0.018  Sum_probs=24.6

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHH
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL  181 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~  181 (658)
                      +.+..++.|+.+-|+||+++.+.-+++.+.
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~   64 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDS   64 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhc
Confidence            345678999999999999999888776543

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=85.77  E-value=0.23  Score=38.99  Aligned_cols=79  Identities=9%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~  235 (658)
                      +|-|-.+||++|.+.....++.....++ +.+-.+|.+++.. ...+.+..+..    ++.+|+|.+  +|        +
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~----~~tvPqIfi--~g--------~   67 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKP----VETVPQIFV--DQ--------Q   67 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCC----SCCSCEEEE--TT--------E
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCC----CCCCCEEEE--CC--------E
Confidence            5678889999999988888777766554 3566677653322 12244444322    568999755  44        2


Q ss_pred             ccCCCCHhHHHHHHHHh
Q 006171          236 FEGELSVDAVTDWFATA  252 (658)
Q Consensus       236 Y~G~rs~~~Lv~fv~k~  252 (658)
                      |-|..  ++|.+++++.
T Consensus        68 ~IGG~--~el~~~~~~~   82 (85)
T d1egoa_          68 HIGGY--TDFAAWVKEN   82 (85)
T ss_dssp             EEESS--HHHHHHHHHH
T ss_pred             EEECH--HHHHHHHHhc
Confidence            34544  5677777654

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.42  E-value=0.26  Score=44.83  Aligned_cols=56  Identities=9%  Similarity=0.004  Sum_probs=43.9

Q ss_pred             CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCC
Q 006171          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP  207 (658)
Q Consensus       152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~  207 (658)
                      .++.+++.|| +.||+.|..-.+.+++..++++... .+-.|.++........|++++
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~   86 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSE   86 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhcccc
Confidence            3567888999 8899999999999999999998765 788888885444445676653

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=1  Score=38.39  Aligned_cols=33  Identities=9%  Similarity=-0.033  Sum_probs=28.2

Q ss_pred             CCCcEEEEEeccCCC-CCCCChHHHHHHHHHhhc
Q 006171          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEG  184 (658)
Q Consensus       152 ~~~~~lV~FYapwC~-~Ck~l~P~w~~~A~~l~g  184 (658)
                      .++++||.|+.+||+ .|....+...++.+.++.
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~   52 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDS   52 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhc
Confidence            478999999999997 498888889988887754

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.62  E-value=2.2  Score=33.53  Aligned_cols=86  Identities=12%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             hhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC-Ceee
Q 006171          268 GKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVV  346 (658)
Q Consensus       268 ~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~-~p~~  346 (658)
                      ++.++...+--.|+|+..+-..+.....+..+|..+++...|......             ..-|.|-++-++.. +|++
T Consensus         8 l~~~l~n~t~v~pVVV~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs~~~~-------------~~~~kLsV~LP~e~dEPIv   74 (98)
T d2b5ea2           8 LPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENA-------------DDDFKLSIYLPSAMDEPVV   74 (98)
T ss_dssp             HHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEECT-------------TSCCEEEEEETTEEEEEEE
T ss_pred             hHHHHhcCcccCCEEEeCCccccchhHHHHHHHHHhhcceEEEeccCC-------------CCCccEEEECCCCCCCCeE
Confidence            456665442223666666633334677788899988777766554311             13477888887754 8999


Q ss_pred             ecCCC----ChHHHHHHHHhhccC
Q 006171          347 YYGSF----NNSRLSEVMEQNKLQ  366 (658)
Q Consensus       347 y~g~~----~~~~L~~fi~~~~~~  366 (658)
                      |.|..    +.+.+.+|++-..+|
T Consensus        75 f~G~~~~i~~a~~l~~WlkVe~lP   98 (98)
T d2b5ea2          75 YNGKKADIADADVFEKWLQVEALP   98 (98)
T ss_dssp             CCSCHHHHTSHHHHHHHHHHHSSC
T ss_pred             EcCccCCcccHHHHHHHHeeeccC
Confidence            99963    455689999877665

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=83.60  E-value=0.17  Score=44.72  Aligned_cols=40  Identities=18%  Similarity=0.112  Sum_probs=31.9

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeee
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMV  191 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~V  191 (658)
                      +.++.+|+|...-|+||+++.|...++.+.+...+++..+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~   56 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKN   56 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEE
Confidence            5678999999999999999999988888777544444433

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=83.05  E-value=0.63  Score=41.13  Aligned_cols=43  Identities=9%  Similarity=0.208  Sum_probs=33.4

Q ss_pred             CCCcEEEEEeccCCC-CCCCChHHHHHHHHHhhcc---cceeeeecc
Q 006171          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEGI---ANTGMVELG  194 (658)
Q Consensus       152 ~~~~~lV~FYapwC~-~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~  194 (658)
                      .+++++|.|+..||. .|....+.+.++.+.++..   +.+..|..+
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            468999999999996 6999999999998888543   244445443

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.88  E-value=0.22  Score=43.73  Aligned_cols=33  Identities=9%  Similarity=0.067  Sum_probs=27.7

Q ss_pred             CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc
Q 006171          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG  184 (658)
Q Consensus       152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g  184 (658)
                      +..+.+++|..+.|+||+++.|+..++.+++..
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~   55 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVK   55 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcc
Confidence            345679999999999999999999988877643

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=81.81  E-value=0.4  Score=36.36  Aligned_cols=54  Identities=11%  Similarity=0.100  Sum_probs=34.8

Q ss_pred             EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (658)
Q Consensus       157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~  222 (658)
                      ++.|..|+|++|++..-..++.      .+.+-.+|.+++.....+-+..+      ...+|.|.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~------~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSG------RTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTC------CSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhC------CccCCEEEE
Confidence            5677889999998766433322      13666777765544444555566      679998754