Citrus Sinensis ID: 006172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
Protein Sequence
MHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEccccccHHHHHHHHHcccEEEEEEEEEcHHHHHHHHHHHccccccccEEEEccHHcccHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEEcEEEcccccHHHHHHHHHcccccEEcHHHHHHHHHHcccEccccccccccccccccccHHHHccccccccccccccccccEEEccHHHHHHHHHHHHHHHHcccccccccccccEHHHcccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHHcccccEEEEEccHHHccHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mhvgeniasssgsnlrssfigmgfspsLVDKVIEEKGQDNVDLLLETLIEYNAlqesnsqssdsldtlfgdkdansppeistmvqpkeepnvmdeglHIEKRASLLMMNFSVNEVDFALdklgkdapvyELVDFITAAQISenfeketddaphdndgtnedksdetlYGTMEITLQLLEMGFSENQVSLAIEKfgsktpiseLADKIFsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssweekvkpnssrygmqqafnsnpcrsinkvvaqppyffygNVVDVSIDCWVKMSHFLyslepefvnsQYFSALSrregylhnlpttnrfhippeppmtiqdaiphtkkwwpswdtrkhlscinsgtsGISQLCERFEKLLRDsrgvlssqqQRDILHRSEKLNLVWvgayklgpvdpeHIELIlgypsnhtqaAGNSLTARLESLRHCFQTDTLGYHLSVLksmfpggltMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWessgqtgelvqIEDIQALTTKKFESLIHKLgsidfvicqnsvpqipnskqisnskdpkmaaesdnlpdfdfsLYYEFVRVVQRVRSMKR
Flexible Loop (DISEMBL)
mhvgeniasssgsnlrssFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALqesnsqssdSLDTLFGDKdansppeistmvqpkeepnVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENfeketddaphdndgtnedksdetLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIfsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSrgvlssqqqrdilhrseklnlVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKgvisietsetnrRILKRwwessgqtgelvqIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Low Complexity Region (SEG)
MHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered region (IsUnstruct)
******************FIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA********************************************HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI**************************LYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYC****************************************************************************************CRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDS**V*******DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS**************************DFDFSLYYEFVRVVQR******
Disordered Region (DISOPRED)
******************FIGMGFSPSLVDKVIEEKGQDNVDLLLETLI***************************************************KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDD*********************EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRS*****************************************************************************************G*****************AQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCER**K*************QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQI*************NLPDFDFSLYYEFVRVVQRVRSM**
Disordered Region (DISEMBL)
*************NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQE********LDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPD*******************KEEYFDDFSNSTSQFQHVDF**********************************RYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR********RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNS************AESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered Region (DISPRO)
*************NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQ******************************************HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISEN*****************DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPR*************************************E******************************************W*EKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS*DPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	658	2.2.26 [Sep-21-2011]
Q9M548	626	DNA (cytosine-5)-methyltr	no	no	0.495	0.520	0.430	2e-79
Q9LXE5	624	DNA (cytosine-5)-methyltr	no	no	0.841	0.887	0.311	1e-77

>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1

 Score =  297 bits (760), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)

Query: 322 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 381
           RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query: 382 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 441
             NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L    
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query: 442 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 499
                 +  QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query: 500 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 559
           +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query: 560 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 619
            NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query: 620 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 658
           +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct: 596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2

 Score =  291 bits (745), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 201/645 (31%), Positives = 320/645 (49%), Gaps = 91/645 (14%)

Query: 17  SSFIGMGFSPSLVDKVIEEKGQDNVD--LLLETLIEYNALQESNSQSSDSLDTLFGDKDA 74
           +SF+ MGFS  ++ + IEE    N++  ++LETL  Y+A  E++S  S  ++       A
Sbjct: 64  ASFVEMGFSTQMIARAIEETAGANMEPMMILETLFNYSASTEASSSKSKVINHFI----A 119

Query: 75  NSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDF 134
              PE   +++  +E    D G   E   +LL    +  EVD    KL +   +   ++ 
Sbjct: 120 MGFPE-EHVIKAMQEHGDEDVG---EITNALL----TYAEVD----KLRESEDMNININD 167

Query: 135 ITAAQISENFEKETDDAPHD-NDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEK 193
                +   +   +DD   + N+ +NED+          I   L++MG+     ++AIE+
Sbjct: 168 DDDDNL---YSLSSDDEEDELNNSSNEDR----------ILQALIKMGYLREDAAIAIER 214

Query: 194 FGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKR 253
            G    + E+ D I + Q+      +R +D +     Y  PD   +   MN ++  R   
Sbjct: 215 CGEDASMEEVVDFICAAQM------ARQFDEI-----YAEPD---KKELMNNNKKRR--- 257

Query: 254 PKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQ 313
                               + E      P++ + D   S         V PN     M 
Sbjct: 258 -------------------TYTET-----PRKPNTDQLISLPKEMIGFGV-PNHPGLMMH 292

Query: 314 QAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRR 373
           +         I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+
Sbjct: 293 RPV------PIPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARK 346

Query: 374 EGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERF 433
            GY+HNLP  NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+ 
Sbjct: 347 RGYIHNLPIQNRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKI 405

Query: 434 EKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGN 493
            + L    G      Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G 
Sbjct: 406 REALERYDGETPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGI 465

Query: 494 SLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVI 553
           S T R +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+
Sbjct: 466 STTDRYKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVV 525

Query: 554 SIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ 613
           S+E S+ NR IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +    
Sbjct: 526 SVEISDANRNILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS---- 581

Query: 614 IPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 658
            P +     ++  ++    ++      SL++++ R+++ VR   R
Sbjct: 582 -PCNNLAGGNRHHRVGLGGEH-----SSLFFDYCRILEAVRRKAR 620

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
225432124	712	PREDICTED: DNA (cytosine-5)-methyltransf	0.981	0.907	0.579	0.0
341868935	710	domain rearranged methyltransferase [Vit	0.978	0.907	0.577	0.0
224112050	609	DNA methyltransferase [Populus trichocar	0.920	0.995	0.547	0.0
255556520	678	conserved hypothetical protein [Ricinus	0.928	0.901	0.552	0.0
356519874	702	PREDICTED: DNA (cytosine-5)-methyltransf	0.963	0.903	0.538	0.0
449441506	724	PREDICTED: uncharacterized protein LOC10	0.946	0.860	0.510	0.0
356564666	729	PREDICTED: DNA (cytosine-5)-methyltransf	0.965	0.871	0.501	0.0
449528407	644	PREDICTED: DNA (cytosine-5)-methyltransf	0.864	0.883	0.547	1e-177
357479111	1032	DNA (cytosine-5)-methyltransferase DRM2	0.957	0.610	0.492	1e-174
147779004	1960	hypothetical protein VITISV_038412 [Viti	0.741	0.248	0.568	1e-166

>gi|225432124|ref|XP_002264226.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Vitis vinifera]

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/680 (57%), Positives = 495/680 (72%), Gaps = 34/680 (5%)

Query: 2   HVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQS 61
           H+G N ASSSGS LRSSFIGMGF PSLVDKVIEEKG+D+VDLLLETL    ALQ+S S+S
Sbjct: 42  HIGHNGASSSGSKLRSSFIGMGFLPSLVDKVIEEKGEDDVDLLLETLCANAALQKSISES 101

Query: 62  SDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDK 121
           SDSLD+   D+D N+PP+ S    PKEEP+V   G++ +KRA+L+MM FSV+EV+FA+DK
Sbjct: 102 SDSLDSFLNDEDTNNPPKFSAGFHPKEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDK 160

Query: 122 LGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMG 181
           LG+ APV ELVDFI AAQI+ + + + DD  + N+   ED ++E L+GTM+ TL+LLEMG
Sbjct: 161 LGEGAPVNELVDFIIAAQIAGSSKMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMG 220

Query: 182 FSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSR 241
           FSEN++S AIEKFGS+ PISELAD IF+GQI      S +  T ++   +   D  S  +
Sbjct: 221 FSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGK 278

Query: 242 KMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWE 300
            M      R         +++S  + SQ + VD  ++ KGKRPKQESLDDSS+++  +W 
Sbjct: 279 GMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWL 338

Query: 301 E---------------------KVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNV 339
           E                     +V    +++GM       PC+S++++VA+PPYFFYGNV
Sbjct: 339 EGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNV 398

Query: 340 VDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDA 399
            +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EGY+HNLP+ NRFHI P+PPMTI++ 
Sbjct: 399 TNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIHNLPSENRFHILPKPPMTIEEV 458

Query: 400 IPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKL 459
           IP+TKKWWPSWDTRK LSCI+S TSGISQLC+R  K+L DSRG+LS +QQRDILH    L
Sbjct: 459 IPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTL 518

Query: 460 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 519
           NLVWVG  KL P++PEH+E ILGYP NHT+    SL  RL+SLRHCFQ DTLGYHLSVLK
Sbjct: 519 NLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLK 578

Query: 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV 579
           SMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E SET R ILK+WW ++GQTGELV
Sbjct: 579 SMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELV 638

Query: 580 QIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFD 639
           QI+DIQ L + K ESLI K G  DFVICQN            +S++ KM A+ D+L  FD
Sbjct: 639 QIDDIQKLASSKLESLIEKFGGFDFVICQNPC--------TYSSRNSKMVADGDSLTGFD 690

Query: 640 FSLYYEFVRVVQRVRS-MKR 658
           FSL+ EFVRV+ RVRS M+R
Sbjct: 691 FSLFCEFVRVLHRVRSTMER 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341868935|gb|AEK98591.1| domain rearranged methyltransferase [Vitis amurensis]

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/680 (57%), Positives = 492/680 (72%), Gaps = 36/680 (5%)

Query: 2   HVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQS 61
           H+G N ASSSGS LRSSFIGMGF PSLVDKVIEEKG+DNVDLLLETL    ALQ+S S+S
Sbjct: 42  HIGHNGASSSGSKLRSSFIGMGFLPSLVDKVIEEKGEDNVDLLLETLCANAALQKSISES 101

Query: 62  SDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDK 121
           SDSLD+   D+D N+PP+ S    PKEEP+V   G++ +KRA+L+MM FSV+EV+FA+DK
Sbjct: 102 SDSLDSFLNDEDTNNPPKFSAGFHPKEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDK 160

Query: 122 LGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMG 181
           LG+ APV ELVDFI AAQI+ + + + DD  + N+   ED ++E L+GTM+ TL+LLEMG
Sbjct: 161 LGEGAPVNELVDFIIAAQIAGSSKMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMG 220

Query: 182 FSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSR 241
           FSEN++S AIEKFGS+ PISELAD IF+GQI      S +  T ++   +   D  S  +
Sbjct: 221 FSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGK 278

Query: 242 KMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWE 300
            M      R         +++S  + SQ + VD  ++ KGKRPKQESLDDSS+++  +W 
Sbjct: 279 GMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWL 338

Query: 301 E---------------------KVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNV 339
           E                     +V    +++GM       PC+S++++VA+PPYFFYGNV
Sbjct: 339 EGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNV 398

Query: 340 VDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDA 399
            +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EG  HNLP+ NRFHI P+PPMTI++ 
Sbjct: 399 SNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEG--HNLPSENRFHILPKPPMTIEEV 456

Query: 400 IPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKL 459
           IP+TKKWWPSWDT K LSCI+S TSGISQLC+R  K+L DSRG+LS +QQRDILH    L
Sbjct: 457 IPYTKKWWPSWDTIKQLSCISSETSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTL 516

Query: 460 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 519
           NLVWVG  KL P++PEH+E ILGYP NHT+    SL  RL+SLRHCFQ DTLGYHLSVLK
Sbjct: 517 NLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLK 576

Query: 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV 579
           SMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E SET R ILK+WW ++GQTGELV
Sbjct: 577 SMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELV 636

Query: 580 QIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFD 639
           QI+DIQ L + K ESLI K G  DFVICQN            +S++ KM A+ D+L  FD
Sbjct: 637 QIDDIQKLASSKLESLIEKFGGFDFVICQNPC--------TYSSRNSKMVADGDSLTGFD 688

Query: 640 FSLYYEFVRVVQRVRS-MKR 658
           FSL+ EFVRV+ RVRS M+R
Sbjct: 689 FSLFCEFVRVLHRVRSTMER 708

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112050|ref|XP_002316067.1| DNA methyltransferase [Populus trichocarpa] gi|222865107|gb|EEF02238.1| DNA methyltransferase [Populus trichocarpa]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/648 (54%), Positives = 459/648 (70%), Gaps = 42/648 (6%)

Query: 9   SSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTL 68
           SSS S LRS F  MG+SPSLV++VIEE G+DNVDLLLE L+E + LQ+ NSQSSDSLD L
Sbjct: 1   SSSRSYLRSFFTEMGYSPSLVNRVIEENGEDNVDLLLEILMECSGLQKPNSQSSDSLDCL 60

Query: 69  FGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPV 128
           F D+  +SPP+ ST+   KEEP+V DE ++ +KR SLL MNF   EV+ A+DKLG++AP+
Sbjct: 61  FDDRGESSPPKYSTVTGVKEEPDVFDE-VYDDKRVSLLKMNFPAKEVELAMDKLGENAPI 119

Query: 129 YELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVS 188
            E++DFI AAQI+ N ++ET+D P  +    ED +DETLYGTM+ TL LL MGFSEN+VS
Sbjct: 120 NEIIDFIIAAQIANNLDRETEDMPDIDAENKEDVNDETLYGTMDKTLCLLNMGFSENEVS 179

Query: 189 LAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSET 248
           LAI+ +                              VK +TE C  D + QSR MNT ET
Sbjct: 180 LAIDNW------------------------------VKSETEDCRRDAILQSRDMNTKET 209

Query: 249 SRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNS 307
            +GKRP++E+ + +    +Q +H   +EN  G++PKQE    SSS+ +  W EEKV  ++
Sbjct: 210 RKGKRPRQEHIEGYQE--AQPRHDSLEENCAGEQPKQEYDYGSSSYFEHEWVEEKVNSDT 267

Query: 308 SRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYF 367
           + +GM + F  NPC+ ++++ A+PPYFFYGNV   S D W K+S FLY +EPEFV++Q+F
Sbjct: 268 TTFGMPKPFKCNPCKILDQIAAKPPYFFYGNVATASSDTWGKISQFLYGIEPEFVDTQFF 327

Query: 368 SALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGIS 427
           SALSRREGY+HNLPT NR HI P+PP+T++D +P TKKWWPSWD RK +SC N  +SG S
Sbjct: 328 SALSRREGYIHNLPTENRSHILPKPPITLEDLMPSTKKWWPSWDARKKMSCRNFDSSGSS 387

Query: 428 QLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNH 487
           QLC+   ++L DSRG+LS++QQRD+L   + LNL+WVG  KL P++  H+E ILGYP NH
Sbjct: 388 QLCDMLGRMLDDSRGLLSAEQQRDLLRHCQALNLMWVGPNKLSPLESAHLEKILGYPLNH 447

Query: 488 TQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI 547
           T  A   LT R+ SLR+ FQTDTLGYHLSVLKS+FP G+T+LS+FSGIGGAE+TLHRLGI
Sbjct: 448 TLIADYPLTERMYSLRYSFQTDTLGYHLSVLKSIFPQGITVLSLFSGIGGAEITLHRLGI 507

Query: 548 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 607
            LKGV+S+ETSETNRR+LKRWW SSGQTG L QIEDI+ LT+   E L+      DFVIC
Sbjct: 508 HLKGVVSVETSETNRRVLKRWWYSSGQTGRLEQIEDIRKLTSSTVERLVENFVCFDFVIC 567

Query: 608 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 655
           QNS  +         SK P + +  ++   FDF+L+ EFVRV+QRVRS
Sbjct: 568 QNSFTR--------PSKIPGVGSGLESQHFFDFTLFNEFVRVLQRVRS 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556520|ref|XP_002519294.1| conserved hypothetical protein [Ricinus communis] gi|223541609|gb|EEF43158.1| conserved hypothetical protein [Ricinus communis]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/655 (55%), Positives = 453/655 (69%), Gaps = 44/655 (6%)

Query: 2   HVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQS 61
            +GE  ASSS S++RS   GMGF PSLVDKVI+E G+DNVDLLLE L+E +  Q+SNSQS
Sbjct: 61  QLGETAASSSASDVRSFLTGMGFLPSLVDKVIQENGEDNVDLLLEILMECSDPQKSNSQS 120

Query: 62  SDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDK 121
           SDSLDTLF DKDA++PPE S   QPKEEP+V   G    KRASLL MNFS  EVDFA++K
Sbjct: 121 SDSLDTLFNDKDASNPPEYSKFGQPKEEPDVF--GFDDSKRASLLHMNFSAEEVDFAMEK 178

Query: 122 LGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMG 181
           LG DAPV E+VDFITAAQ++ NF++E DD    +   N+  S  +               
Sbjct: 179 LGTDAPVDEIVDFITAAQVAANFDEERDDELEHDVEQNKYCSRHSR-------------- 224

Query: 182 FSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSR 241
            + + V+   E F  +                 D  R  SY   + K E  S + VS+S 
Sbjct: 225 MNPSHVARGGESFNME---------------IRDEQRRDSYG--RKKPENLSQEAVSRSS 267

Query: 242 KMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-E 300
            +N  E  RGKRPK+EY + +SN  +Q +H  F+EN + + PK E   DSS   +S+W E
Sbjct: 268 NLNLEEIHRGKRPKQEYTEGYSN--TQDEHFGFEENYEEEGPKPEYTADSSFSFESAWVE 325

Query: 301 EKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPE 360
           EKV    + + + +      C+S++++VA+PPYF YGNV  VS+D W K+S FLY++EPE
Sbjct: 326 EKVDTEITGFRIPREPKFKSCKSVDRMVAKPPYFLYGNVATVSLDTWGKISQFLYAVEPE 385

Query: 361 FVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCIN 420
           FVN+Q+FSALSR+EGY+HNLPT NRFHI P+PPM+I DA+PH KKWWPSWDTRK LS IN
Sbjct: 386 FVNTQFFSALSRKEGYVHNLPTENRFHILPKPPMSILDAMPHIKKWWPSWDTRKQLSFIN 445

Query: 421 SGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELI 480
             T+G+SQLC+R  ++L DSRG++SSQQ+RDILH   KLNLVWVG +K+ P++PEH+ELI
Sbjct: 446 YETNGLSQLCDRLGRMLTDSRGLISSQQKRDILHHCHKLNLVWVGLHKVRPIEPEHLELI 505

Query: 481 LGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEV 540
           LGYP NHTQ    SLT RL +LR+ FQ DTLGYHLSVLKSMFP G+T+LS+FSGIGGAEV
Sbjct: 506 LGYPLNHTQTTEGSLTERLHALRYSFQIDTLGYHLSVLKSMFPEGITVLSLFSGIGGAEV 565

Query: 541 TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 600
            LHRLGI +KGV+S+ETSET R+IL+ WW +SGQTGEL QIEDIQ LTTKK + LI + G
Sbjct: 566 ALHRLGIHMKGVVSVETSETKRKILRMWWRNSGQTGELEQIEDIQKLTTKKIDRLIERFG 625

Query: 601 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 655
             DFVICQ        S     S +PKM   +D     DFSL+ EFVRV+QRVR+
Sbjct: 626 GFDFVICQ--------SPCTCASGNPKMEQRADARSALDFSLFCEFVRVLQRVRT 672

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519874|ref|XP_003528594.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/672 (53%), Positives = 455/672 (67%), Gaps = 38/672 (5%)

Query: 3   VGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSS 62
           VG+N+ASSSG  LR+ FIGMGF P LVDKVIEE G++N D+LLE L+ Y+ALQ+SNSQSS
Sbjct: 35  VGDNVASSSGGKLRAFFIGMGFLPCLVDKVIEENGEENSDILLEALLRYSALQKSNSQSS 94

Query: 63  DSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKL 122
            SLD+LF DKD   PPEIS + Q KEEP+ +  G+  + R SLLMMNFSV EV+FA+ KL
Sbjct: 95  VSLDSLFDDKD---PPEISNVNQAKEEPDELS-GVVDDTRGSLLMMNFSVEEVEFAIHKL 150

Query: 123 GKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGF 182
           G +A + ELVDFI A QI++  +KE DD      G   + ++E L+G M  TLQL EMGF
Sbjct: 151 GDEASIPELVDFIFALQIAKKLKKEPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGF 210

Query: 183 SENQVSLAIEKFGSKTPISELADKIFSGQIFLD-------------------TPRSRSYD 223
           SEN+VS AI+K GS+ PISELA+ IF+ Q  +D                    P    Y 
Sbjct: 211 SENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYG 270

Query: 224 TVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRP 283
           T +VK E  S +   QS ++N  ET      KEE   D   S    Q++D  EN +GKRP
Sbjct: 271 TAEVKVEGFSHEP-PQSSQVNLEETYNDDMVKEEEGIDAFPSNVSDQYLDVVENGRGKRP 329

Query: 284 KQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDV 342
           K E  DD  + L+ SW EE+V    +   M +    NP R ++ V A+PP+F +GNV ++
Sbjct: 330 KYEHDDDPVNCLEPSWVEERVDAVVAE--MSRHPKPNPSRCLSSVAAKPPFFLFGNVSNI 387

Query: 343 SIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPH 402
           S D W KMS FLY +EPEF N+Q FSA+ R EGY+HNLP  NRFHI P+PPMTI+DA+P 
Sbjct: 388 SYDSWTKMSQFLYGIEPEFANAQSFSAMDRIEGYIHNLPVENRFHILPKPPMTIEDAMPQ 447

Query: 403 TKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLV 462
           TKKWWP WD+RK LS I   T+GI+Q C+R    L DS GVL+S+QQ+DIL    +LNLV
Sbjct: 448 TKKWWPPWDSRKLLSSIYCETNGIAQTCDRLGNFLADSGGVLTSEQQKDILRYCRRLNLV 507

Query: 463 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 522
           W+G +KLGPV+PE +ELILGYP NHT+A   ++  RL+SL++CFQTDTLGYHLSVL+ +F
Sbjct: 508 WIGKFKLGPVEPEQLELILGYPLNHTRATEGNVAERLKSLKYCFQTDTLGYHLSVLRPIF 567

Query: 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE 582
           P GLTMLS+FSG+GGAE+ LHRL IK+K V+S+ETSET R+IL++WW  SGQTG LVQIE
Sbjct: 568 PHGLTMLSLFSGLGGAEIALHRLAIKIKAVVSVETSETKRKILEKWWRQSGQTGTLVQIE 627

Query: 583 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSL 642
           DIQ LT+KK E LI K G  D VI QN     P S   S     ++ A    L   DFS+
Sbjct: 628 DIQKLTSKKLEGLISKFGGFDLVIYQN-----PCSYSSS-----RLQA-GVGLSALDFSV 676

Query: 643 YYEFVRVVQRVR 654
           + E VRV+QRVR
Sbjct: 677 FCECVRVLQRVR 688

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441506|ref|XP_004138523.1| PREDICTED: uncharacterized protein LOC101206985 [Cucumis sativus]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/730 (51%), Positives = 460/730 (63%), Gaps = 107/730 (14%)

Query: 2   HVGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQS 61
           HVG++ ASSSGSN+R+ FI MGF PSLVD VIE+  Q ++                  QS
Sbjct: 27  HVGDSGASSSGSNVRTFFIDMGFLPSLVDSVIEKNEQKSI-----------------PQS 69

Query: 62  SDSLDTLFGDKDANSPPEISTM----------------------------------VQPK 87
           SDSL+ L   K  ++PP +ST+                                  V PK
Sbjct: 70  SDSLEGLQSGKMGSNPPHVSTVCHKQVQAAQTSKSESSDSLDSLFDDKDAHNEISSVIPK 129

Query: 88  EEPNVMDEGLHIE--KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFE 145
           EE    D+  HI    +ASLL+MNFS +EVDFA+DKLG DAP+ ELVDFI AAQI+   E
Sbjct: 130 EE---ADDYYHISDTNKASLLVMNFSADEVDFAIDKLGGDAPLNELVDFIIAAQIAIKLE 186

Query: 146 KETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELAD 205
           KETDDA   N+   E+ +DETL+ TME TL+LLEMGFSEN+VSLAIEKFGS+T +SELAD
Sbjct: 187 KETDDAFCRNELKKEE-NDETLFVTMEKTLRLLEMGFSENEVSLAIEKFGSETQVSELAD 245

Query: 206 KIFSGQIFLDTP---------------RSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSR 250
            I +G+I  D P                +R     KVK E  S  V    R +N     +
Sbjct: 246 SIVTGRIASDYPGDVKCSPSSFGIGGLYTREDYVTKVKAEESSSAVGPLPRNVNIEAIQK 305

Query: 251 GKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPN--- 306
           GKRPKEE  DD  N T++          KGKRPKQE  DD  S     W E KV P+   
Sbjct: 306 GKRPKEENMDDLLNPTTRLN------KHKGKRPKQEYADDLGSLYGPGWVESKVNPDITS 359

Query: 307 -----SSRYGMQQAFN------------SNPCRSINKVVAQPPYFFYGNVVDVSIDCWVK 349
                SSR  + ++ +            SNP R++ KVV +PP+F YGNV+D+S D W K
Sbjct: 360 FDIPPSSRLNLSRSLDKLVAKPPCPPLKSNPSRALEKVVTKPPFFLYGNVLDISRDSWAK 419

Query: 350 MSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPS 409
           +S FLY++EPEFV+++ FSALSR EGY+HNLP  NRFHI P PPMTIQDA   TKKWWPS
Sbjct: 420 VSKFLYAVEPEFVDTRSFSALSRTEGYVHNLPCENRFHIIPLPPMTIQDAT-RTKKWWPS 478

Query: 410 WDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKL 469
           WDTRK+LSCINS T G+ QLC+R  K L DS G  SS ++RDILH    LNL+WV  +KL
Sbjct: 479 WDTRKYLSCINSETRGVPQLCDRLTKTLTDSGGHPSSHEERDILHHCIALNLIWVSQFKL 538

Query: 470 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTML 529
            PV+PE +E +LGYP NHTQ A +S   RL+ L++CFQTD LGYHLSVLKSMFP GL +L
Sbjct: 539 APVEPEQLECVLGYPVNHTQDAESSSIERLQYLKYCFQTDALGYHLSVLKSMFPEGLVVL 598

Query: 530 SVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT 589
           S+FSGIGGAE+ LHRLGI LK V+S+E+S   RRILK+WW SSGQTGEL QIEDIQ LT+
Sbjct: 599 SIFSGIGGAEIALHRLGIHLKVVVSVESSAAKRRILKKWWHSSGQTGELEQIEDIQKLTS 658

Query: 590 KKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRV 649
            K  + I K G  D VICQN     P S+ +S+SK    + +++ +  FDFS++YEFVRV
Sbjct: 659 IKINNWITKYGGFDLVICQN-----PCSRCLSSSK-LNQSGDAEGIASFDFSIFYEFVRV 712

Query: 650 VQRVR-SMKR 658
           +Q VR +M R
Sbjct: 713 LQSVRNTMHR 722

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564666|ref|XP_003550572.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/710 (50%), Positives = 452/710 (63%), Gaps = 75/710 (10%)

Query: 3   VGENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSS 62
           VG+N+ASSSG  LR+ FIGMGF P LVDKVIEE G++N D LLE L+ Y+A  +SN  S 
Sbjct: 35  VGDNVASSSGGKLRAFFIGMGFLPCLVDKVIEENGEENSDTLLEALLRYSA-HKSNCDSF 93

Query: 63  DSLDT------------------------------------LFGDKDANSPPEISTMVQP 86
           DSL                                      LF DKD   PPEIS + Q 
Sbjct: 94  DSLGVSHNTSRGRSAPNFYPDGHSKEALQKSNSQSSDSLDSLFDDKD---PPEISNVNQA 150

Query: 87  KEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEK 146
           KEEP+ +  G+  +KR SLLMMNFSV EV+ A+ KLG +A + ELVDFI A QI++  +K
Sbjct: 151 KEEPDELS-GVIDDKRGSLLMMNFSVEEVELAIHKLGDEASIPELVDFIFAWQIAKKLKK 209

Query: 147 ETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 206
           E DD      G   + ++E L+G M  TLQL EMGFSEN+VS AI+K GS+ PISELA+ 
Sbjct: 210 EPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPISELANF 269

Query: 207 IFSGQIFLD-------------------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSE 247
           IF+ Q  +D                    P    Y T +VK E  S +   QS ++N  E
Sbjct: 270 IFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYGTAEVKVEDFSNE-PPQSSQVNLEE 328

Query: 248 TSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPN 306
           T      KEE   D   S    Q++D  EN +GKRPK E  DDS + L+ SW EE+V   
Sbjct: 329 TYNEDMVKEEEGIDAFPSYVSDQYLDVVENGRGKRPKYEHDDDSITCLEPSWVEERVDVV 388

Query: 307 SSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQY 366
            +   M +    NP R ++ V A+PP+F +GNV ++S D W KMS FLY +EPEF N+Q 
Sbjct: 389 VAE--MSRRPKPNPSRCLSSVAAKPPFFLFGNVSNISYDSWTKMSKFLYGIEPEFANAQS 446

Query: 367 FSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGI 426
           FSAL R EGY+HNLP  NRFHI P+PPMTI+DA+P TKKWWP WD+RK LS I   T+GI
Sbjct: 447 FSALDRIEGYIHNLPVENRFHILPKPPMTIEDAMPLTKKWWPPWDSRKQLSSIYCETNGI 506

Query: 427 SQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSN 486
           +Q C+R   +L DS GVL+S+ Q+DIL     LNLVW+G +KLGPV+PE +ELILGYP N
Sbjct: 507 AQTCDRLGNILADSGGVLTSELQKDILRYCRGLNLVWIGKFKLGPVEPEQLELILGYPLN 566

Query: 487 HTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG 546
           HT+A+  ++  RL+SL++CFQTDTLGYHLSVL+ +FP GLTMLS+FSG+GGAE+ LHRLG
Sbjct: 567 HTRASEGNVAERLKSLKYCFQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHRLG 626

Query: 547 IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 606
           IK+K V+S+ETSET R+IL+RWW  SGQTG LVQ+EDIQ LT+KK E LI K G  D VI
Sbjct: 627 IKIKVVVSVETSETKRKILERWWRQSGQTGTLVQLEDIQKLTSKKLEGLISKFGGFDLVI 686

Query: 607 CQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656
            QN    + +S+ ++             LP  +FS++ E VRV+QR+R M
Sbjct: 687 YQNPCSNL-SSRLLAGV----------GLPALEFSVFCECVRVLQRIRGM 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528407|ref|XP_004171196.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Cucumis sativus]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 345/630 (54%), Positives = 423/630 (67%), Gaps = 61/630 (9%)

Query: 69  FGDKDANSPPEISTMVQPKEEPNVMDEGLHIE--KRASLLMMNFSVNEVDFALDKLGKDA 126
           F DKDA++  EIS+++ PKEE    D+  HI    +ASLL+MNFS +EVDFA+DKLG DA
Sbjct: 34  FDDKDAHN--EISSVI-PKEE---ADDYYHISDTNKASLLVMNFSADEVDFAIDKLGGDA 87

Query: 127 PVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQ 186
           P+ ELVDFI AAQI+   EKETDDA   N+   E+ +DETL+ TME TL+LLEMGFSEN+
Sbjct: 88  PLNELVDFIIAAQIAIKLEKETDDAFCRNELKKEE-NDETLFVTMEKTLRLLEMGFSENE 146

Query: 187 VSLAIEKFGSKTPISELADKIFSGQIFLDTP----------------RSRSYDTVKVKTE 230
           VSLAIEKFGS+T +SELAD I +G+I  D P                    Y T KVK E
Sbjct: 147 VSLAIEKFGSETQVSELADSIVTGRIASDYPGDVKCSPSSFGIGGLYTPEDYVT-KVKAE 205

Query: 231 YCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDD 290
             S  V    R +N     +GKRPKEE  DD  N T++          KGKRPKQE  DD
Sbjct: 206 ESSSAVGPLPRNVNIEAIQKGKRPKEENMDDLLNPTTRLN------KHKGKRPKQEYADD 259

Query: 291 SSSFLDSSW-EEKVKPN--------SSRYGMQQAFN------------SNPCRSINKVVA 329
             S     W E KV P+        SSR  + ++ +            SNP R++ KVV 
Sbjct: 260 LGSLYGPGWVESKVNPDITSFDIPPSSRLNLSRSLDKLVAKPPCPPLKSNPSRALEKVVT 319

Query: 330 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIP 389
           +PP+F YGNV+D+S D W K+S FLY++EPEFV+++ FSALSR EGY+HNLP  NRFHI 
Sbjct: 320 KPPFFLYGNVLDISRDSWAKVSKFLYAVEPEFVDTRSFSALSRTEGYVHNLPCENRFHII 379

Query: 390 PEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQ 449
           P PPMTIQDA   TKKWWPSWDTRK+LSCINS T G+ QLC+R  K L DS G  SS Q+
Sbjct: 380 PLPPMTIQDAT-RTKKWWPSWDTRKYLSCINSETRGVPQLCDRLTKTLTDSGGHPSSHQE 438

Query: 450 RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTD 509
           RDILH    LNL+WV  +KL PV+PE +E +LGYP NHTQ A +S   RL+ L++CFQTD
Sbjct: 439 RDILHHCIALNLIWVSQFKLAPVEPEQLECVLGYPVNHTQDAESSSIERLQYLKYCFQTD 498

Query: 510 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569
            LGYHLSVLKSMFP GL +LS+FSGIGGAE+ LHRLGI LK V+S+E+S   RRILK+WW
Sbjct: 499 ALGYHLSVLKSMFPEGLVVLSIFSGIGGAEIALHRLGIHLKVVVSVESSAAKRRILKKWW 558

Query: 570 ESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMA 629
            SSGQTGEL QIEDIQ LT+ K  + I K G  D VICQN     P S+ +S+SK    +
Sbjct: 559 HSSGQTGELEQIEDIQKLTSIKINNWITKYGGFDLVICQN-----PCSRCLSSSK-LNQS 612

Query: 630 AESDNLPDFDFSLYYEFVRVVQRVR-SMKR 658
            +++ +  FDFS++YEFVRV+Q VR +M R
Sbjct: 613 GDAEGIASFDFSIFYEFVRVLQSVRNTMHR 642

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479111|ref|XP_003609841.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula] gi|355510896|gb|AES92038.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 350/710 (49%), Positives = 452/710 (63%), Gaps = 80/710 (11%)

Query: 5   ENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKG-----QDNVDLLLETLIEYN------- 52
           E  ASSSGS +R  FIGMGF P LVDKVIEE G     ++N D LLE L+  +       
Sbjct: 37  ETAASSSGSKVRGFFIGMGFLPGLVDKVIEENGTLCVSEENSDALLEILLRCSTNGDSSD 96

Query: 53  -------------------------ALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPK 87
                                    ALQ SN +SSDSLD+LF DKD+   PE+S + QPK
Sbjct: 97  SLEGSLNTNEHRSIPNFFPNAHSKEALQISNLESSDSLDSLFDDKDS---PEVSMINQPK 153

Query: 88  EEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKE 147
           EE + + E +  + R +LLMMNFS  EV+FA+ KLG  APV ELVDFI AAQI++  +KE
Sbjct: 154 EEVDEIFEDIE-DSRGTLLMMNFSAEEVEFAIRKLGNKAPVPELVDFIFAAQIAKKMKKE 212

Query: 148 TDDAPHDNDGTNEDK-SDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 206
             +         E + S+E L+G M  TLQL EMGFSEN++S A++K G   PISELA+ 
Sbjct: 213 EAEEDDIKCYVREKEISNEQLFGIMAKTLQLFEMGFSENEISSAVDKLGPDVPISELANF 272

Query: 207 IFSGQIFLD------------------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSET 248
           IF+ Q  ++                    +S  Y T +VK E  S +  SQSR++N  ET
Sbjct: 273 IFAEQNGIEYVMEYKYPSGPSYSWIKEEEQSDMYGTAEVKVEDFSHEP-SQSRQVNLGET 331

Query: 249 SRGKRPKEE-YFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNS 307
             G+R KEE Y D+F +         F EN + KRPK E  D+S+S LD  W E++  ++
Sbjct: 332 GTGERVKEEDYIDEFPDDVKP----GFMENDRNKRPKYEYDDNSNSSLDPYWVEEMV-DT 386

Query: 308 SRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYF 367
               M +   S P RS++ V A+PP+F +GNV +++ D W KMS FLY +EPEFVN++ F
Sbjct: 387 VVATMSRRNKSTPSRSLSSVAAKPPFFLFGNVSNITYDSWKKMSQFLYCIEPEFVNTELF 446

Query: 368 SALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGIS 427
           SAL+R EGY+HNLPT NRF I P+PPMTI+DAIP TKKWWP WD+RK L+C    T GI+
Sbjct: 447 SALNRIEGYIHNLPTENRFQILPKPPMTIEDAIPRTKKWWPPWDSRKKLNCNYCETGGIT 506

Query: 428 QLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNH 487
           QLC+R  + L +S G+L+SQQQ+DIL     LNLVW G YKLGP++PEH++ ILGYP NH
Sbjct: 507 QLCDRLGRALANSGGILTSQQQKDILRYCRGLNLVWTGKYKLGPIEPEHLDHILGYPLNH 566

Query: 488 TQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI 547
           T+     LT RL+ L+H FQTDTLGYHLSVLK +FP G+T+LS+FSGIGGAEV LHRLGI
Sbjct: 567 TRTDECDLTERLQLLKHSFQTDTLGYHLSVLKPIFPTGVTLLSIFSGIGGAEVALHRLGI 626

Query: 548 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 607
           K+K ++S+ETS T R+IL++WW SSGQ+G LVQIE+IQ LT+KKFE+LI+  G  D VI 
Sbjct: 627 KIKALVSVETSATKRKILEKWWRSSGQSGTLVQIEEIQKLTSKKFENLINNFGVFDLVIY 686

Query: 608 QNSVPQ-IPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656
           QN   Q I    Q+              L   +FS + E VR++QRVR++
Sbjct: 687 QNPCSQPIVRPHQVG------------GLSAVEFSAFCESVRILQRVRAL 724

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779004|emb|CAN75753.1| hypothetical protein VITISV_038412 [Vitis vinifera]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 296/521 (56%), Positives = 372/521 (71%), Gaps = 33/521 (6%)

Query: 161  DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSR 220
            D ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD IF+GQI      S 
Sbjct: 1361 DCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSS 1420

Query: 221  SYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRK 279
            +  T ++   +   D  S  + M      R         +++S  + SQ + VD  ++ K
Sbjct: 1421 A--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHK 1478

Query: 280  GKRPKQESLDDSSSFLDSSWEE---------------------KVKPNSSRYGMQQAFNS 318
            GKRPKQESLDDSS+++  +W E                     +V    +++GM      
Sbjct: 1479 GKRPKQESLDDSSAYIGPTWJEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKP 1538

Query: 319  NPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLH 378
             PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EGY+H
Sbjct: 1539 MPCKSLDQLVAKPPYFFYGNVXNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIH 1598

Query: 379  NLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR 438
            NLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S TSGISQLC+R  K+L 
Sbjct: 1599 NLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILV 1658

Query: 439  DSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTAR 498
            DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILGYP NHT+    SL  R
Sbjct: 1659 DSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIER 1718

Query: 499  LESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 558
            L+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E S
Sbjct: 1719 LQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEIS 1778

Query: 559  ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSK 618
            ET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  DFVICQN         
Sbjct: 1779 ETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPC------- 1831

Query: 619  QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 658
               +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 1832 -TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 1871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
TAIR|locus:2089075	710	DRM3 "domains rearranged methy	0.594	0.550	0.478	7.1e-126
TAIR|locus:2222627	626	DRM2 "domains rearranged methy	0.495	0.520	0.430	3.9e-87
TAIR|locus:2150991	624	DRM1 "domains rearranged methy	0.492	0.519	0.4	7.3e-82

TAIR|locus:2089075 DRM3 "domains rearranged methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
 Identities = 200/418 (47%), Positives = 267/418 (63%)

Query:   244 NTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEXXXXXXXXXXXXW-EEK 302
             N  ETSRGKRPK+E  D+  N+  + ++  + +  +GKR + E            W +++
Sbjct:   314 NVGETSRGKRPKDE--DE--NAYPE-EYTGYDD--RGKRLRPEDMGDSSSFMETPWMQDE 366

Query:   303 VKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFV 362
              K N+  Y           +S+   VA+ PYFFYG + ++S   W K+S FL+ + PE V
Sbjct:   367 WKDNT--YEFPSVMQPRLSQSLGPKVARRPYFFYGQLGELSPSWWSKISGFLFGIHPEHV 424

Query:   363 NSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSG 422
             +++  SAL R EGYLHNLPT NRF+  P P +TIQDA+PH + WWP WD RKH    NSG
Sbjct:   425 DTRLCSALRRTEGYLHNLPTVNRFNTLPNPRLTIQDAMPHMRSWWPQWDIRKHF---NSG 481

Query:   423 T-SGISQ---LCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIE 478
             T S +     LCER  + + + +G  + Q Q  IL      NL+W+    L P++PEH+E
Sbjct:   482 TCSNMKDATLLCERIGRRIAECKGKPTQQDQTLILRHCHTSNLIWIAPNILSPLEPEHLE 541

Query:   479 LILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGA 538
              I+GYP NHT   G  L  RL+   +CFQTDTLGYHLSVLKSMFP GLT+LS+FSGIGGA
Sbjct:   542 CIMGYPMNHTNIGGGRLAERLKLFDYCFQTDTLGYHLSVLKSMFPQGLTVLSLFSGIGGA 601

Query:   539 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 598
             E+ L RLGI LKGV+S+E+   +R ILKRWW++SGQTGELVQIE+I++LT K+ E+L+ +
Sbjct:   602 EIALDRLGIHLKGVVSVESCGLSRNILKRWWQTSGQTGELVQIEEIKSLTAKRLETLMQR 661

Query:   599 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656
              G  DFVICQN    +  SK+ISNS+    A E      FD++L+ EF RV +RVR M
Sbjct:   662 FGGFDFVICQNPSTPLDLSKEISNSE----ACE------FDYTLFNEFARVTKRVRDM 709

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0006306 "DNA methylation" evidence=IMP

TAIR|locus:2222627 DRM2 "domains rearranged methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 146/339 (43%), Positives = 205/339 (60%)

Query:   322 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 381
             RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct:   297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query:   382 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR--D 439
               NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L   +
Sbjct:   357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query:   440 SRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 499
                      QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct:   416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query:   500 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 559
             +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct:   476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query:   560 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 619
              NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct:   536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query:   620 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 658
             +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct:   596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0008170 "N-methyltransferase activity" evidence=ISS

GO:0016458 "gene silencing" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2150991 DRM1 "domains rearranged methylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 7.3e-82, Sum P(3) = 7.3e-82
 Identities = 134/335 (40%), Positives = 201/335 (60%)

Query:   324 INKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 383
             I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+ GY+HNLP  
Sbjct:   297 IPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQ 356

Query:   384 NRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGV 443
             NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L    G 
Sbjct:   357 NRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALERYDGE 415

Query:   444 LSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLR 503
                  Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R +SL 
Sbjct:   416 TPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDRYKSLG 475

Query:   504 HCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 563
             + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S+ NR 
Sbjct:   476 NSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRN 535

Query:   564 ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS 623
             IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +     P +     +
Sbjct:   536 ILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNNLAGGN 590

Query:   624 KDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 658
             +  ++    ++      SL++++ R+++ VR   R
Sbjct:   591 RHHRVGLGGEHS-----SLFFDYCRILEAVRRKAR 620

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.37	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019681001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (691 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	658
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	99.9
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	99.89
PRK10458	467	DNA cytosine methylase; Provisional	99.86
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.85
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	99.85
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	99.24
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.18
PRK10458	467	DNA cytosine methylase; Provisional	98.44
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	98.29
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.85
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.72
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.36
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.35
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.28
COG2520	341	Predicted methyltransferase [General function pred	97.15
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.12
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.11
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.96
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.91
PHA03412	241	putative methyltransferase; Provisional	96.8
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	96.79
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.66
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.53
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.53
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.52
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.45
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.44
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	96.43
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.43
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.34
PHA03411	279	putative methyltransferase; Provisional	96.31
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.23
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.15
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.14
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.04
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.01
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.89
COG0742	187	N6-adenine-specific methylase [DNA replication, re	95.88
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	95.85
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.83
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	95.82
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.8
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.79
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.78
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	95.63
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	95.54
COG2265	432	TrmA SAM-dependent methyltransferases related to t	95.53
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	95.52
PRK14967	223	putative methyltransferase; Provisional	95.49
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.45
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	95.44
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.43
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	95.43
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.41
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.29
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.28
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.21
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.19
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.07
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.04
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	95.02
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	94.94
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	94.87
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	94.72
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.68
PRK00117	157	recX recombination regulator RecX; Reviewed	94.43
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	94.3
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.28
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	94.26
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	93.91
PRK14968	188	putative methyltransferase; Provisional	93.85
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	93.78
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	93.72
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	93.7
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	93.44
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	93.38
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	93.34
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	93.29
COG2890	280	HemK Methylase of polypeptide chain release factor	93.09
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	93.05
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	93.05
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	93.04
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	92.87
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	92.78
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	92.76
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	92.48
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	92.38
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	92.3
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	92.15
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	92.09
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	92.0
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	91.8
PRK11207	197	tellurite resistance protein TehB; Provisional	91.59
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	91.46
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	91.46
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	91.33
COG4123	248	Predicted O-methyltransferase [General function pr	91.32
KOG2730	263	consensus Methylase [General function prediction o	91.12
PLN02244	340	tocopherol O-methyltransferase	90.87
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	90.74
KOG1227	351	consensus Putative methyltransferase [General func	90.53
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	90.47
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	90.45
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	90.39
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	90.24
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	90.21
PLN02585	315	magnesium protoporphyrin IX methyltransferase	90.19
PRK14135	263	recX recombination regulator RecX; Provisional	89.89
PRK07402	196	precorrin-6B methylase; Provisional	89.83
KOG2904	328	consensus Predicted methyltransferase [General fun	89.76
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	89.69
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	89.65
PRK14135	263	recX recombination regulator RecX; Provisional	89.29
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	89.0
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	88.58
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	88.38
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	88.34
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	88.19
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	87.47
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	87.17
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	87.08
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	87.03
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	86.99
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	86.87
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	86.85
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	86.82
PRK10258	251	biotin biosynthesis protein BioC; Provisional	86.71
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	86.66
PRK12335	287	tellurite resistance protein TehB; Provisional	86.57
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	86.42
PRK05785	226	hypothetical protein; Provisional	86.28
PRK13255	218	thiopurine S-methyltransferase; Reviewed	85.69
PLN02233	261	ubiquinone biosynthesis methyltransferase	85.42
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	85.21
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	85.0
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	84.89
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	84.5
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	84.37
PRK10742	250	putative methyltransferase; Provisional	84.36
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	84.29
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	83.93
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	83.93
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	83.75
PRK00811	283	spermidine synthase; Provisional	83.51
PLN02672	1082	methionine S-methyltransferase	83.14
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	82.91
PLN03196	487	MOC1-like protein; Provisional	82.56
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	82.33
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	81.84
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	81.74
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	80.87
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	80.8
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	80.7
PRK00117	157	recX recombination regulator RecX; Reviewed	80.35
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	80.23

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=99.90  E-value=5.5e-24  Score=217.63  Aligned_cols=105  Identities=22%  Similarity=0.396  Sum_probs=87.6

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  605 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  605 (658)
                      ||||||||||||+++||+++||  ++++++|+|+.|++||+.+|.       .+..+||++++.+.|+.      ++|||
T Consensus         1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l   65 (335)
T PF00145_consen    1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL   65 (335)
T ss_dssp             EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred             CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence            5899999999999999999996  679999999999999999774       36789999999886642      59999


Q ss_pred             EecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          606 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       606 IGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      +||||||+||.+|+            +.|++|+|+.||++|+|+|+++||+.
T Consensus        66 ~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~~~v~~~~Pk~  105 (335)
T PF00145_consen   66 IGGPPCQGFSIAGK------------RKGFDDPRNSLFFEFLRIVKELKPKY  105 (335)
T ss_dssp             EEE---TTTSTTST------------HHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred             EeccCCceEecccc------------ccccccccchhhHHHHHHHhhccceE
Confidence            99999999998864            35688999999999999999999974

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.89  E-value=8.7e-24  Score=223.28  Aligned_cols=109  Identities=19%  Similarity=0.342  Sum_probs=95.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      ..+++|||||||||+++||+.+||  ++++++|||+.|++||++++..     ..++..||.++..+.+...     ++|
T Consensus         2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-----~~D   69 (328)
T COG0270           2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-----DVD   69 (328)
T ss_pred             CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-----CCC
Confidence            468999999999999999999996  6799999999999999986532     3467899999998877432     799


Q ss_pred             EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172          604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  656 (658)
Q Consensus       604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~  656 (658)
                      +|+||||||+||.+|+            |.|++|+|++||++|+|+|..+||+
T Consensus        70 vligGpPCQ~FS~aG~------------r~~~~D~R~~L~~~~~r~I~~~~P~  110 (328)
T COG0270          70 VLIGGPPCQDFSIAGK------------RRGYDDPRGSLFLEFIRLIEQLRPK  110 (328)
T ss_pred             EEEeCCCCcchhhcCc------------ccCCcCccceeeHHHHHHHHhhCCC
Confidence            9999999999998864            3679999999999999999999985

>PRK10458 DNA cytosine methylase; Provisional

Probab=99.86  E-value=3.7e-22  Score=220.20  Aligned_cols=126  Identities=17%  Similarity=0.275  Sum_probs=97.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH--------Hh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL  595 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie--------~l  595 (658)
                      .++++|||||||||+++||+++|+  ++++++|+|+.|++||+.+|..  .+.+.+..+||++++...+.        ..
T Consensus        87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (467)
T PRK10458         87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH  162 (467)
T ss_pred             CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence            368999999999999999999998  5799999999999999998742  22344567899999854321        11


Q ss_pred             h-hccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006172          596 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       596 ~-~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~-D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      + ...+++|||+||||||+||.+|+.+..    -.+.+.|+. |+|++||++|+|+|+++||++
T Consensus       163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~----~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~  222 (467)
T PRK10458        163 IRQHIPDHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFECETQGTLFFDVARIIDAKRPAI  222 (467)
T ss_pred             hhccCCCCCEEEEcCCCCccchhcccccc----cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence            1 234689999999999999998753210    012334664 889999999999999999975

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.85  E-value=1.3e-21  Score=202.29  Aligned_cols=106  Identities=19%  Similarity=0.360  Sum_probs=92.1

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  605 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  605 (658)
                      ++|+|||||+||+++||+++|+  ++++++|+|+.|+++|+++|..      .++.+||++++..++      .+++|+|
T Consensus         1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~------~~~~D~l   66 (275)
T cd00315           1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF------IPDIDLL   66 (275)
T ss_pred             CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc------CCCCCEE
Confidence            5799999999999999999997  5799999999999999987642      256899999987643      3679999


Q ss_pred             EecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          606 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       606 IGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      +||||||+||.+|+            +.|.+|+|+.||++|+|+|+++||++
T Consensus        67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~  106 (275)
T cd00315          67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY  106 (275)
T ss_pred             EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence            99999999998764            25678999999999999999999974

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=99.85  E-value=1.4e-21  Score=205.55  Aligned_cols=103  Identities=17%  Similarity=0.362  Sum_probs=89.0

Q ss_pred             ccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 006172          528 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC  607 (658)
Q Consensus       528 vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG  607 (658)
                      ||||||||||+++||+++||  ++++++|+++.|+++|+.+|.     + .++.+||++++..++       +++|||+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI-------PDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC-------CCcCEEEe
Confidence            68999999999999999997  579999999999999998653     2 356789999986543       47999999


Q ss_pred             cCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          608 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       608 GpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      |||||+||.+|+            +.|++|+|+.||++|+|+|+++||++
T Consensus        66 g~PCq~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~P~~  103 (315)
T TIGR00675        66 GFPCQPFSIAGK------------RKGFEDTRGTLFFEIVRILKEKKPKF  103 (315)
T ss_pred             cCCCcccchhcc------------cCCCCCchhhHHHHHHHHHhhcCCCE
Confidence            999999998764            35688999999999999999999864

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=99.24  E-value=1e-11  Score=126.66  Aligned_cols=111  Identities=18%  Similarity=0.304  Sum_probs=95.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +.++|++|+||+||+..+|+.+-|+-.+|+|+|++..|..+|+.+     ..+.++...||+.|+.+++..+     .+|
T Consensus         2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-----~h~~L~k~~~I~~lt~kefd~l-----~~~   71 (338)
T KOG0919|consen    2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-----YHSNLVKTRNIQSLTVKEFDKL-----QAN   71 (338)
T ss_pred             CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-----cccchhhccccceeeHhhhhhc-----ccc
Confidence            358999999999999999999999999999999999999999764     3345677889999999988765     689


Q ss_pred             EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172          604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  656 (658)
Q Consensus       604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~  656 (658)
                      ++.-.||||+|.-.|            .++-+.|+|+..|.+.+.+|-+++..
T Consensus        72 m~lMSPpCQPfTRiG------------~q~D~~D~Rs~aflhil~~lP~~q~L  112 (338)
T KOG0919|consen   72 MLLMSPPCQPFTRIG------------LQRDTEDKRSDAFLHILGLLPECQEL  112 (338)
T ss_pred             eEeeCCCCCchhhhc------------ccccccCchhHHHHHHHhhhhhhhhh
Confidence            999999999999443            23448899999999999999888653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.18  E-value=2.4e-11  Score=126.11  Aligned_cols=157  Identities=13%  Similarity=0.150  Sum_probs=111.0

Q ss_pred             CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-cccccccccc-ccCCCCCCc-----CCCCCCC
Q 006172          329 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRF-----HIPPEPP  393 (658)
Q Consensus       329 ~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~-hNLP~~~R~-----~~~p~~p  393 (658)
                      .+|++|++|||..+-.    ..+..|.+.|    |.+.+.++|+..| .||.|+|.|+ .-..+....     |-.+.++
T Consensus       102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~  181 (275)
T cd00315         102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK  181 (275)
T ss_pred             cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence            4899999999999865    4566776666    6789999999999 7889999995 222222211     1122346


Q ss_pred             CcccccccCCCccCCCcCCCcccceecccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCC
Q 006172          394 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD  473 (658)
Q Consensus       394 ~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~il~~c~~~nlvW~g~~~~~ple  473 (658)
                      .|+.|+|     ++..|+.  -..|+++....   ...          .+...            ..-+|..+.+.+.|+
T Consensus       182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT  229 (275)
T cd00315         182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT  229 (275)
T ss_pred             CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence            8999999     5677776  45677766421   000          00000            001145677899999


Q ss_pred             hhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172          474 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  518 (658)
Q Consensus       474 ~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL  518 (658)
                      +.|+.||+|||++|+-.++ +.+.+++.+||+..+..++++...+
T Consensus       230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i  273 (275)
T cd00315         230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI  273 (275)
T ss_pred             HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence            9999999999999987543 8999999999999998887765443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK10458 DNA cytosine methylase; Provisional

Probab=98.44  E-value=1.6e-07  Score=104.94  Aligned_cols=57  Identities=9%  Similarity=0.104  Sum_probs=46.8

Q ss_pred             ccccCCCChhhHHHHhcCC--CCCcccCCCChHHHHHhhhhhhcccchhhhcccccccC
Q 006172          466 AYKLGPVDPEHIELILGYP--SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  522 (658)
Q Consensus       466 ~~~~~ple~~E~E~i~GfP--~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f  522 (658)
                      .++++.|+|.|+-||+|||  ..++=...++.++.||.+|||..|+++..++..|+.+.
T Consensus       398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~~  456 (467)
T PRK10458        398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKI  456 (467)
T ss_pred             cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            3578999999999999995  43332247899999999999999999998887777643

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=98.29  E-value=1.4e-07  Score=96.93  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             eecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhccccc
Q 006172          463 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  519 (658)
Q Consensus       463 W~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK  519 (658)
                      ++.+.+.+.|++.|+.||+|||++|.-  ..+.+++++.+||+..+....++...|+
T Consensus       280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i~  334 (335)
T PF00145_consen  280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAIK  334 (335)
T ss_dssp             EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHhh
Confidence            456789999999999999999999985  5566699999999998888877765543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.85  E-value=4.5e-06  Score=88.65  Aligned_cols=179  Identities=13%  Similarity=0.169  Sum_probs=95.6

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-ccccccccccccCC---CCCCcCCCCC----
Q 006172          328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE----  391 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~hNLP---~~~R~~~~p~----  391 (658)
                      ..+|.+|++|||..+-.    ..+..|-+-|    |.+...++||..| .||+|+|.|+--.-   .... ...|.    
T Consensus        98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~-~~~p~~~~~  176 (315)
T TIGR00675        98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLN-FEFPKPIYV  176 (315)
T ss_pred             hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcC-CCCCCCccc
Confidence            45899999999987643    3566665555    6778899999999 99999999876322   1111 12233    


Q ss_pred             -CCCcccccccCCC----ccCCCcCCCcccceecccC-------------CchhHHHHHHHHHHhhccCCCchhhhHHHH
Q 006172          392 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSGT-------------SGISQLCERFEKLLRDSRGVLSSQQQRDIL  453 (658)
Q Consensus       392 -~p~ti~e~lp~~~----~~wp~wd~r~k~~ci~t~~-------------~~~~~l~~~i~~~~~~~~~~~~~~~q~~il  453 (658)
                       ...||.|++....    .|+++-...+.+..+....             ..........+++..+....  ...+..+.
T Consensus       177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~  254 (315)
T TIGR00675       177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL  254 (315)
T ss_pred             ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence             2567888775321    1111110000000000000             00000000000111100000  00000000


Q ss_pred             HhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhh
Q 006172          454 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGY  513 (658)
Q Consensus       454 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~  513 (658)
                      ..+. .+.. +-+.+.+.|++.|.-||+|||++|.  |..+.+..++.+||+.-+....+
T Consensus       255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~--f~~s~~~~~~qiGNAVPp~la~~  310 (315)
T TIGR00675       255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFK--FPVSDSQLYKQAGNAVVVPVIEA  310 (315)
T ss_pred             eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccE--eCCCHHHHHhhhCCcccHHHHHH
Confidence            0011 0111 2356779999999999999999996  45899999999999986654443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.72  E-value=7.3e-05  Score=66.29  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      |.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.++...... ...++.+|++++.. .     ...+.+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD   72 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence            4689999999999999999999 2 35789999999999888876654321 22355677765531 0     1237899


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|++-||.-+..
T Consensus        73 ~Iv~npP~~~~~   84 (117)
T PF13659_consen   73 LIVTNPPYGPRS   84 (117)
T ss_dssp             EEEE--STTSBT
T ss_pred             EEEECCCCcccc
Confidence            999999986543

...

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.36  E-value=0.00016  Score=74.54  Aligned_cols=82  Identities=13%  Similarity=0.154  Sum_probs=57.4

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      ..+||||+||.|.+.+.+.+..-. ..++++|+++.+.+..+.+....+   ..++.+|+.+.-...+      .+.||+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~------~~~fDl  156 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL------RGRVDI  156 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc------CCCEeE
Confidence            458999999999999988754211 236889999999988887764322   2345677654221111      257999


Q ss_pred             EEecCCCCCccc
Q 006172          605 VICQNSVPQIPN  616 (658)
Q Consensus       605 VIGGpPCQ~FS~  616 (658)
                      |+.-|||.+.+.
T Consensus       157 Vv~NPPy~~~~~  168 (251)
T TIGR03704       157 LAANAPYVPTDA  168 (251)
T ss_pred             EEECCCCCCchh
Confidence            999999998763

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.35  E-value=0.0001  Score=78.76  Aligned_cols=183  Identities=13%  Similarity=0.144  Sum_probs=97.8

Q ss_pred             cCCCCccccccccccchh---hHHHHhhhhc----cCCceeecccc-cccccccccccc-----cCCCCCCcCCCCC---
Q 006172          328 VAQPPYFFYGNVVDVSID---CWVKMSHFLY----SLEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE---  391 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~~---~w~~is~fL~----~~~Pe~vds~~-fsaa~R~r~y~h-----NLP~~~R~~~~p~---  391 (658)
                      ..+|.||++|||..|-..   .|+.|.+-|.    .+...++||++ --||+|.|-|+.     |+-...--. .+.   
T Consensus       106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~  184 (328)
T COG0270         106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG  184 (328)
T ss_pred             hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence            456799999999999886   8888888774    45566777765 479999999999     777664311 111   


Q ss_pred             CCCcccccc-----cCCCccCC-CcCCCcccceecccCC----chhH-----HHHHHH--HHHhhcc-CCCchhhhHHHH
Q 006172          392 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTS----GISQ-----LCERFE--KLLRDSR-GVLSSQQQRDIL  453 (658)
Q Consensus       392 ~p~ti~e~l-----p~~~~~wp-~wd~r~k~~ci~t~~~----~~~~-----l~~~i~--~~~~~~~-~~~~~~~q~~il  453 (658)
                      ...++-+++     +.+..-|. .+...-+.+-+.....    ....     ...+..  ....+.. ..+...+    .
T Consensus       185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t~----~  260 (328)
T COG0270         185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKNKGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPTV----R  260 (328)
T ss_pred             cccchhhhhhhccCcchhhhhccccccccccccCchhhhccccccccccccccccccCCCceeEeCCCCCCCcee----e
Confidence            022222221     11111000 0000000000000000    0000     000000  0000000 0000000    0


Q ss_pred             HhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172          454 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  520 (658)
Q Consensus       454 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~  520 (658)
                         ...+-.=+-+...+.|++.|+-+|+|||+.|.=.+  +.+.+++.+||+..+....++..-+..
T Consensus       261 ---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~~  322 (328)
T COG0270         261 ---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAILK  322 (328)
T ss_pred             ---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHHH
Confidence               11111122355667799999999999999998765  999999999999988877776655443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.28  E-value=0.00033  Score=69.39  Aligned_cols=82  Identities=22%  Similarity=0.261  Sum_probs=49.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||||||.|.+.+=.-.-|..  -|+.||.++.+.++++.+....+... ..++..|...    .+..+......|
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~~~~~~~~~f  115 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLLKLAKKGEKF  115 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHHHHHHCTS-E
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHHhhcccCCCc
Confidence            5688999999999887644555764  58899999999999999887654221 1122333221    122222234789


Q ss_pred             cEEEecCCC
Q 006172          603 DFVICQNSV  611 (658)
Q Consensus       603 DLVIGGpPC  611 (658)
                      |||.--||=
T Consensus       116 DiIflDPPY  124 (183)
T PF03602_consen  116 DIIFLDPPY  124 (183)
T ss_dssp             EEEEE--ST
T ss_pred             eEEEECCCc
Confidence            999999983

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.15  E-value=0.0006  Score=73.89  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=68.8

Q ss_pred             hcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-Cccccccc
Q 006172          506 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI  584 (658)
Q Consensus       506 fqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI  584 (658)
                      |+.-...-+..+++..++ |-+|+|+|||+|-+++-.-+.|-. + |+|+||||.|.+-++.+-.-+.-.+ ...+++|.
T Consensus       171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~  247 (341)
T COG2520         171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA  247 (341)
T ss_pred             ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence            444444445555655554 899999999999999999999954 4 8999999999999988754322223 22467787


Q ss_pred             cccChhhHHHhhhccCCccEEEecCCC
Q 006172          585 QALTTKKFESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       585 ~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  611 (658)
                      +++...        .+.+|=||-|-|=
T Consensus       248 rev~~~--------~~~aDrIim~~p~  266 (341)
T COG2520         248 REVAPE--------LGVADRIIMGLPK  266 (341)
T ss_pred             HHhhhc--------cccCCEEEeCCCC
Confidence            766543        2679988888884

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.12  E-value=0.00095  Score=67.34  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=49.9

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +..+-+|+|+|||+|.+++-+-+.+ +.+.|+|+|++|.|.+-++.+-...+-.+.+ ++.+|.+++..         .+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~  168 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG  168 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence            4567889999999999999888743 2356899999999999998875543333322 35677766643         24


Q ss_pred             CccEEEecCCCC
Q 006172          601 SIDFVICQNSVP  612 (658)
Q Consensus       601 ~~DLVIGGpPCQ  612 (658)
                      .+|-|+.+.|=.
T Consensus       169 ~~drvim~lp~~  180 (200)
T PF02475_consen  169 KFDRVIMNLPES  180 (200)
T ss_dssp             -EEEEEE--TSS
T ss_pred             ccCEEEECChHH
Confidence            689899888733

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.11  E-value=0.0011  Score=65.79  Aligned_cols=83  Identities=17%  Similarity=0.064  Sum_probs=56.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||||||.|.+.+.+-..|-.  .+++||+++.+.++.+.++...+... ..++.+|+.+.    +..+......+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~  122 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD  122 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence            3568999999999999999988864  58899999999999998876543211 12345555321    11111111237


Q ss_pred             cEEEecCCCC
Q 006172          603 DFVICQNSVP  612 (658)
Q Consensus       603 DLVIGGpPCQ  612 (658)
                      |+|+--||=.
T Consensus       123 dvv~~DPPy~  132 (189)
T TIGR00095       123 NVIYLDPPFF  132 (189)
T ss_pred             eEEEECcCCC
Confidence            8888888753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.96  E-value=0.0018  Score=71.38  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||||||+||+++..-..|-  .-+++||+++.+....+.++..++..  ...++.+|+.++-    ..+....+.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~  293 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK  293 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence            457899999999999887666664  35789999999999988887654321  1234567765432    222222357


Q ss_pred             ccEEEecCCC
Q 006172          602 IDFVICQNSV  611 (658)
Q Consensus       602 ~DLVIGGpPC  611 (658)
                      ||+||--||+
T Consensus       294 fDlVilDPP~  303 (396)
T PRK15128        294 FDVIVMDPPK  303 (396)
T ss_pred             CCEEEECCCC
Confidence            9999999997

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.91  E-value=0.0011  Score=65.02  Aligned_cols=82  Identities=24%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC-ccE
Q 006172          527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS-IDF  604 (658)
Q Consensus       527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~-~DL  604 (658)
                      +|||+|||+||=++.|-+.+   .-|++||+|+...+..+++-.-.+ .....++.+|..++-..    +  +... +|+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~   72 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV   72 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred             EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence            58999999999999999996   358999999999888877543321 11122345555443211    0  1122 799


Q ss_pred             EEecCCCCCcccC
Q 006172          605 VICQNSVPQIPNS  617 (658)
Q Consensus       605 VIGGpPCQ~FS~a  617 (658)
                      |...||=-+.+..
T Consensus        73 vFlSPPWGGp~Y~   85 (163)
T PF09445_consen   73 VFLSPPWGGPSYS   85 (163)
T ss_dssp             EEE---BSSGGGG
T ss_pred             EEECCCCCCcccc
Confidence            9999998887754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PHA03412 putative methyltransferase; Provisional

Probab=96.80  E-value=0.002  Score=66.85  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=81.0

Q ss_pred             CCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcC--C
Q 006172          470 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I  547 (658)
Q Consensus       470 ~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aG--i  547 (658)
                      ++|+-+|.|-++   .||+-.    ...-.+.+|-.|....+++++... . . .+.+|||+-||.|.+.+.+-+.-  -
T Consensus         5 ~~~~~~~~~f~~---~n~~~~----~~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~   74 (241)
T PHA03412          5 KALTYEEKLFII---ENFHEG----AFTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA   74 (241)
T ss_pred             ccccHHHHHHHH---hhcccc----cccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence            456777777776   467652    222335668888888888876422 1 2 35799999999999999876531  0


Q ss_pred             ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 006172          548 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  615 (658)
Q Consensus       548 ~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  615 (658)
                      +-..+.+||||+.+.+..+.+.     ....++..|+.....         .+.||+||+=||=-...
T Consensus        75 ~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         75 KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF---------DTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence            1125789999999988776532     223456677764321         14799999999866543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=96.79  E-value=0.0038  Score=62.78  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=52.2

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +-+|||||||.|.+.+.+-..|.  .-++++|+++.+.+..+.+....+.....++.+|+.+.    +.   ...+.+|+
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl  124 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV  124 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence            46899999999999985433343  34789999999999998877554322223445555321    11   11246999


Q ss_pred             EEecCC
Q 006172          605 VICQNS  610 (658)
Q Consensus       605 VIGGpP  610 (658)
                      |+--||
T Consensus       125 V~~DPP  130 (199)
T PRK10909        125 VFVDPP  130 (199)
T ss_pred             EEECCC
Confidence            999999

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.66  E-value=0.0045  Score=58.15  Aligned_cols=84  Identities=20%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             CCCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+||||-||.|-+...|. +++... -++++|+++.+.+..+......+.....++.+||.++... ++      +.|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence            56899999999999999999 565433 3789999999998888765544333344677899886643 31      579


Q ss_pred             cEEEecCCCCCcc
Q 006172          603 DFVICQNSVPQIP  615 (658)
Q Consensus       603 DLVIGGpPCQ~FS  615 (658)
                      |+|+...++..+.
T Consensus        75 D~I~~~~~l~~~~   87 (152)
T PF13847_consen   75 DIIISNGVLHHFP   87 (152)
T ss_dssp             EEEEEESTGGGTS
T ss_pred             eEEEEcCchhhcc
Confidence            9999998885443

...

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.53  E-value=0.0036  Score=68.32  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +-+|||||||+|.+++.+...|-   -+++||+++.+.+..+.+....+.....+..+|+.++...       ..+.+|+
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~  303 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL  303 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence            35799999999999998887763   4789999999999888876543221222455666443211       1145899


Q ss_pred             EEecCC
Q 006172          605 VICQNS  610 (658)
Q Consensus       605 VIGGpP  610 (658)
                      |+-=||
T Consensus       304 vi~DPP  309 (374)
T TIGR02085       304 VLVNPP  309 (374)
T ss_pred             EEECCC
Confidence            999998

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>smart00165 UBA Ubiquitin associated domain

Probab=96.53  E-value=0.0044  Score=45.67  Aligned_cols=36  Identities=31%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      .++++.|+.|||+++.+..|+.+||.+  ++.-+++|+
T Consensus         2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence            357899999999999999999999986  567777663

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.52  E-value=0.0051  Score=65.37  Aligned_cols=80  Identities=23%  Similarity=0.223  Sum_probs=56.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +-+|||||||.|.+++.|.+.|-   -++++|+++.+.+..+.+....+.....++.+|+.++...       ..+.+|+
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~  243 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL  243 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence            46899999999999999998774   4789999999988877765433221223455666543210       1246899


Q ss_pred             EEecCCCCCc
Q 006172          605 VICQNSVPQI  614 (658)
Q Consensus       605 VIGGpPCQ~F  614 (658)
                      |+--||+.+.
T Consensus       244 Vv~dPPr~G~  253 (315)
T PRK03522        244 VLVNPPRRGI  253 (315)
T ss_pred             EEECCCCCCc
Confidence            9999997764

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.45  E-value=0.0088  Score=57.86  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      ..-++|||-||+|-+++.+.+.+-..+ +.++|+++.+....+.++...+-....+...|+.+--         ..+.||
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD  100 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD  100 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence            456899999999999999999887644 7899999999999988876543221223345543211         136899


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+..||
T Consensus       101 ~Iv~NPP  107 (170)
T PF05175_consen  101 LIVSNPP  107 (170)
T ss_dssp             EEEE---
T ss_pred             EEEEccc
Confidence            9999999

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.44  E-value=0.013  Score=62.51  Aligned_cols=82  Identities=21%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+|||.|++.+.+...|..   ++++|+|+...+..+.+....+.....+..+|+.++...        .+.+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~---v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~  249 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAK---VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV  249 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCe---EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence            34678999999999998777777753   688999998777666554433222223456777765421        2479


Q ss_pred             cEEEecCCCCCcc
Q 006172          603 DFVICQNSVPQIP  615 (658)
Q Consensus       603 DLVIGGpPCQ~FS  615 (658)
                      |+|+.-|||...+
T Consensus       250 D~Iv~dPPyg~~~  262 (329)
T TIGR01177       250 DAIATDPPYGRST  262 (329)
T ss_pred             CEEEECCCCcCcc
Confidence            9999999986544

This family is found exclusively in the Archaea.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=96.43  E-value=0.0063  Score=45.31  Aligned_cols=36  Identities=31%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI  135 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I  135 (658)
                      ..+++..|+.|||+++.+..|+..||-+  ++.=+++|
T Consensus         2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence            4578999999999999999999999984  56666654

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.43  E-value=0.0069  Score=62.91  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||++||.||.++.+..+--+--.++++|+++...+.++.+....+.....+...|.+.+.        ...+.||
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--------~~~~~fD  142 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG--------AAVPKFD  142 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh--------hhccCCC
Confidence            45789999999999998876531111148899999999888887665433222223345544332        1134699


Q ss_pred             EEEecCCCCCccc
Q 006172          604 FVICQNSVPQIPN  616 (658)
Q Consensus       604 LVIGGpPCQ~FS~  616 (658)
                      +|+--+||.+...
T Consensus       143 ~Vl~D~Pcsg~G~  155 (264)
T TIGR00446       143 AILLDAPCSGEGV  155 (264)
T ss_pred             EEEEcCCCCCCcc
Confidence            9999999986654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.34  E-value=0.013  Score=59.89  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+..         ..+.||
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD  177 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD  177 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence            4578999999999999999877522 357899999999888877654111122224455552211         125799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+.-||+-+.+
T Consensus       178 ~Iv~npPy~~~~  189 (275)
T PRK09328        178 LIVSNPPYIPEA  189 (275)
T ss_pred             EEEECCCcCCcc
Confidence            999999997765

>PHA03411 putative methyltransferase; Provisional

Probab=96.31  E-value=0.0072  Score=64.04  Aligned_cols=93  Identities=17%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             hhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccc
Q 006172          503 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQ  580 (658)
Q Consensus       503 gnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~  580 (658)
                      |-.|..+.+.++| ++...  .+-+||||+||+|.+.+.+...  +.   -++++|+++.+.+..+..+     +...++
T Consensus        46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~~---~V~gVDisp~al~~Ar~n~-----~~v~~v  114 (279)
T PHA03411         46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKPE---KIVCVELNPEFARIGKRLL-----PEAEWI  114 (279)
T ss_pred             eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhC-----cCCEEE
Confidence            6677888888887 34332  2358999999999998777543  33   4789999999887766532     223356


Q ss_pred             cccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 006172          581 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  615 (658)
Q Consensus       581 ~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  615 (658)
                      .+|+.++..         ...||+|++-||-....
T Consensus       115 ~~D~~e~~~---------~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411        115 TSDVFEFES---------NEKFDVVISNPPFGKIN  140 (279)
T ss_pred             ECchhhhcc---------cCCCcEEEEcCCccccC
Confidence            677765431         24699999999987654

>cd00194 UBA Ubiquitin Associated domain

Probab=96.23  E-value=0.01  Score=43.83  Aligned_cols=36  Identities=33%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      .++++.|+.|||+++.+..|+..|+-+  ++.-+++|+
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~   37 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL   37 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            357899999999999999999999985  577777775

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.15  E-value=0.012  Score=56.57  Aligned_cols=76  Identities=17%  Similarity=0.048  Sum_probs=55.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-++||++||.|.++..+.+.+-   .++++|+|+.+...++.++...  ....++.+|+.++...        ...+|
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~--------~~~~d   79 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLP--------KLQPY   79 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCcc--------ccCCC
Confidence            346899999999999999888763   4789999999998888765431  1223567777766421        12589


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|++.+|=+
T Consensus        80 ~vi~n~Py~   88 (169)
T smart00650       80 KVVGNLPYN   88 (169)
T ss_pred             EEEECCCcc
Confidence            999998854

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.14  E-value=0.015  Score=64.23  Aligned_cols=83  Identities=12%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||||||+|.+++.|.+.+-   .++++|+++.+.+..+.+....+.....++.+|+.++    +..+....+.+|
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D  364 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD  364 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence            346899999999999999988763   4789999999998888766443322333556666542    111111124589


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +|+--||.-+
T Consensus       365 ~vi~dPPr~G  374 (431)
T TIGR00479       365 VLLLDPPRKG  374 (431)
T ss_pred             EEEECcCCCC
Confidence            9999999765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.04  E-value=0.013  Score=65.28  Aligned_cols=84  Identities=12%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||++||.||.+..+-++ +-. ..++++|+++......+.+....+.....++.+|..++..         .+.|
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f  319 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP  319 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence            3578999999999988766542 211 2478999999998888876654332222244566655431         2469


Q ss_pred             cEEEecCCCCCcccC
Q 006172          603 DFVICQNSVPQIPNS  617 (658)
Q Consensus       603 DLVIGGpPCQ~FS~a  617 (658)
                      |+|+--+||.+....
T Consensus       320 D~Vl~D~Pcsg~g~~  334 (445)
T PRK14904        320 DAILLDAPCTGTGVL  334 (445)
T ss_pred             CEEEEcCCCCCcchh
Confidence            999999999887753

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.01  E-value=0.023  Score=55.02  Aligned_cols=76  Identities=14%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  605 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  605 (658)
                      -+||||.||.|.+...+.+.|.   .++++|+++...+..+.+.... +....+..+|+.+..          .+.||+|
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~V   86 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDVI   86 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccEE
Confidence            5799999999999999999885   4789999999988877765432 222223445654321          2479999


Q ss_pred             EecCCCCCcc
Q 006172          606 ICQNSVPQIP  615 (658)
Q Consensus       606 IGGpPCQ~FS  615 (658)
                      +..+|+....
T Consensus        87 i~n~p~~~~~   96 (179)
T TIGR00537        87 LFNPPYLPLE   96 (179)
T ss_pred             EECCCCCCCc
Confidence            9999997665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.89  E-value=0.022  Score=63.22  Aligned_cols=84  Identities=12%  Similarity=0.177  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||++||.||.+..+.+.+-. ..++++|+++......+.+....+.. ..++.+|+.++..     . ...+.||
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~-~~~~~fD  315 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----W-WDGQPFD  315 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----h-cccCCCC
Confidence            4578999999999999888876532 35889999999998888876554322 2355677765421     0 0124699


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+-.+||.+..
T Consensus       316 ~Vl~D~Pcs~~G  327 (427)
T PRK10901        316 RILLDAPCSATG  327 (427)
T ss_pred             EEEECCCCCccc
Confidence            999999998754

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=95.88  E-value=0.023  Score=57.08  Aligned_cols=91  Identities=20%  Similarity=0.285  Sum_probs=57.2

Q ss_pred             cccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHH
Q 006172          515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE  593 (658)
Q Consensus       515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie  593 (658)
                      |..|.+.+-.+-++||||||.|++.+=.-.-|.  .-++.||.|..+..+++.|-...+..+ ..++..|..    .-+.
T Consensus        34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----~~L~  107 (187)
T COG0742          34 FNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----RALK  107 (187)
T ss_pred             HHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH----HHHH
Confidence            444554233568899999999997544444455  357889999999999998765543112 122333332    1111


Q ss_pred             HhhhccCCccEEEecCCCC
Q 006172          594 SLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       594 ~l~~~~g~~DLVIGGpPCQ  612 (658)
                      . ....+.||+|.==||=.
T Consensus       108 ~-~~~~~~FDlVflDPPy~  125 (187)
T COG0742         108 Q-LGTREPFDLVFLDPPYA  125 (187)
T ss_pred             h-cCCCCcccEEEeCCCCc
Confidence            1 11224599999999976

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=95.85  E-value=0.019  Score=63.84  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||||||.|.+++.|.+.+.   .++++|+++.+.+..+.+....+.....++.+|+.+...    .+....+.||
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD  369 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD  369 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence            346899999999999999988773   578999999998888776443322223355677654321    1100124699


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+--||+.+..
T Consensus       370 ~Vi~dPPr~g~~  381 (443)
T PRK13168        370 KVLLDPPRAGAA  381 (443)
T ss_pred             EEEECcCCcChH
Confidence            999999987654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.83  E-value=0.025  Score=60.33  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      .+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+....+... ..++.+|+.+.    +     ..+.||+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l-----~~~~fDl  204 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L-----PGRRYDL  204 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C-----CCCCccE
Confidence            58999999999999998876422 347899999999998887654432111 22345555321    1     1136999


Q ss_pred             EEecCCCCCcc
Q 006172          605 VICQNSVPQIP  615 (658)
Q Consensus       605 VIGGpPCQ~FS  615 (658)
                      |+.-||+-+..
T Consensus       205 IvsNPPyi~~~  215 (307)
T PRK11805        205 IVSNPPYVDAE  215 (307)
T ss_pred             EEECCCCCCcc
Confidence            99999987654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=95.82  E-value=0.033  Score=58.65  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=56.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      ..+|||++||.|.+.+.+.+..-.. .++++|+++.+.+..+.+....+... ..++.+|+.+.    +     ..+.||
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD  191 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD  191 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence            4689999999999999998764222 47899999999888887654332111 12345565321    1     113699


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+.-||+-+.+
T Consensus       192 ~Iv~NPPy~~~~  203 (284)
T TIGR03533       192 LIVSNPPYVDAE  203 (284)
T ss_pred             EEEECCCCCCcc
Confidence            999999997654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.80  E-value=0.024  Score=66.94  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||||||.||+++.+...|-.  -|++||+++.+.+..+.+...++..  ...++.+|+.+.    +..   ..+.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~  608 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ  608 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence            3568999999999999999998863  4889999999999988877543221  123445665432    111   1357


Q ss_pred             ccEEEecCCCCCc
Q 006172          602 IDFVICQNSVPQI  614 (658)
Q Consensus       602 ~DLVIGGpPCQ~F  614 (658)
                      ||+||-=||+-..
T Consensus       609 fDlIilDPP~f~~  621 (702)
T PRK11783        609 FDLIFIDPPTFSN  621 (702)
T ss_pred             cCEEEECCCCCCC
Confidence            9999999997553

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.79  E-value=0.017  Score=62.83  Aligned_cols=82  Identities=13%  Similarity=0.141  Sum_probs=53.8

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh-----h---
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI-----H---  597 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~-----~---  597 (658)
                      -+|||||||.|++++++.+..   +-+++||+++.+.+..+.+-...+.....++.+|+.++-.. +....     .   
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence            469999999999999998764   35789999999999888764332221223456776553211 11000     0   


Q ss_pred             -ccCCccEEEecCCC
Q 006172          598 -KLGSIDFVICQNSV  611 (658)
Q Consensus       598 -~~g~~DLVIGGpPC  611 (658)
                       ....+|+|+--||=
T Consensus       284 ~~~~~~D~v~lDPPR  298 (362)
T PRK05031        284 LKSYNFSTIFVDPPR  298 (362)
T ss_pred             ccCCCCCEEEECCCC
Confidence             01148999999993

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.78  E-value=0.022  Score=63.37  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||++||.||.++.+.+. |-. ..++++|+++...+..+.+....+.....++.+|+.++.. .+      .+.|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f  321 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF  321 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence            3468999999999999887654 211 2478999999998888877654432223345677765431 11      1579


Q ss_pred             cEEEecCCCCCccc
Q 006172          603 DFVICQNSVPQIPN  616 (658)
Q Consensus       603 DLVIGGpPCQ~FS~  616 (658)
                      |+|+-.+||.++..
T Consensus       322 D~Vl~D~Pcsg~G~  335 (444)
T PRK14902        322 DKILVDAPCSGLGV  335 (444)
T ss_pred             CEEEEcCCCCCCee
Confidence            99999999987654

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.035  Score=64.41  Aligned_cols=101  Identities=24%  Similarity=0.257  Sum_probs=71.1

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCccc
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD   94 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~   94 (658)
                      ++.+|+.||||++--.||+==.|..++++-...|...=.            |.+++|--+      -.++.++...    
T Consensus       574 ~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMd------------Dpd~~~p~v------vp~~~~~a~~----  631 (763)
T KOG0944|consen  574 VISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMD------------DPDIDDPFV------VPGNSPKADA----  631 (763)
T ss_pred             HHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhcc------------CcccCCcee------cCCCCCcccc----
Confidence            899999999999999999999999999988888876321            222222111      1111111111    


Q ss_pred             cchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           95 EGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        95 ~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      .+...+.+..++.|||++..+.+|+....  +.|+..+|-|+.+-
T Consensus       632 ~~~~e~~v~si~smGf~~~qa~~aL~~~n--~nveravDWif~h~  674 (763)
T KOG0944|consen  632 REVDEESVASIVSMGFSRNQAIKALKATN--NNVERAVDWIFSHM  674 (763)
T ss_pred             CCCChhHheeeeeecCcHHHHHHHHHhcC--ccHHHHHHHHHhcc
Confidence            01123456889999999999999999944  45899999999874

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.54  E-value=0.036  Score=56.03  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=56.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|+||=||+|=+.+|..-+|-  .-|++||+|+.+..+.+.+-.. ..-...+...||+++.           +.+|
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----------~~~d  110 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----------GKFD  110 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----------Cccc
Confidence            456799999999999999999996  4689999999999999986543 1112334566776554           5789


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      .||--||
T Consensus       111 tvimNPP  117 (198)
T COG2263         111 TVIMNPP  117 (198)
T ss_pred             eEEECCC
Confidence            9999887

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.53  E-value=0.017  Score=64.69  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|+|||||+|++++.|-+...   -|.++|+++.+....+.+-..++-....++.+|..++...-.     ....+|
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-----~~~~~d  364 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-----EGYKPD  364 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----ccCCCC
Confidence            346899999999999999986554   588999999999888876433222223334444444432211     113678


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+==||
T Consensus       365 ~VvvDPP  371 (432)
T COG2265         365 VVVVDPP  371 (432)
T ss_pred             EEEECCC
Confidence            8887776

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=95.52  E-value=0.034  Score=45.53  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=51.7

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172          527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  606 (658)
Q Consensus       527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI  606 (658)
                      +++|+.||.|++...+...+  ...++++|+++.+....+............++..|+.+...       ...+++|+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence            57999999999998888733  24678999999887666532111111122234455554432       1236799999


Q ss_pred             ecCCCCCc
Q 006172          607 CQNSVPQI  614 (658)
Q Consensus       607 GGpPCQ~F  614 (658)
                      ..+||..+
T Consensus        72 ~~~~~~~~   79 (107)
T cd02440          72 SDPPLHHL   79 (107)
T ss_pred             Eccceeeh
Confidence            99998874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14967 putative methyltransferase; Provisional

Probab=95.49  E-value=0.029  Score=56.49  Aligned_cols=78  Identities=18%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||++||.|.+.+.+.+.|.  ..++++|+++.+.+..+.+....+ ....++.+|+.+.    +     ..+.||
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~----~-----~~~~fD  103 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARA----V-----EFRPFD  103 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhh----c-----cCCCee
Confidence            346899999999999998888875  357899999998877666543321 1122344555431    1     125799


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +|+..||-..
T Consensus       104 ~Vi~npPy~~  113 (223)
T PRK14967        104 VVVSNPPYVP  113 (223)
T ss_pred             EEEECCCCCC
Confidence            9999987543

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.45  E-value=0.046  Score=57.29  Aligned_cols=80  Identities=14%  Similarity=0.076  Sum_probs=55.5

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      .+|||++||.|.+.+.+....-. ..++++|+++.+.+..+.+....+... ..++.+|+.+-    +     ....||+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~-----~~~~fDl  185 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L-----AGQKIDI  185 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C-----cCCCccE
Confidence            58999999999999999876532 247899999999888887654332211 22344555321    1     0126999


Q ss_pred             EEecCCCCCcc
Q 006172          605 VICQNSVPQIP  615 (658)
Q Consensus       605 VIGGpPCQ~FS  615 (658)
                      |+.-||.-+.+
T Consensus       186 IvsNPPyi~~~  196 (284)
T TIGR00536       186 IVSNPPYIDEE  196 (284)
T ss_pred             EEECCCCCCcc
Confidence            99999998765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>smart00165 UBA Ubiquitin associated domain

Probab=95.44  E-value=0.017  Score=42.52  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=30.3

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI   49 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL   49 (658)
                      .+++++.|||+++.+.+|++..|. |.+.-++.|+
T Consensus         4 ~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~   37 (37)
T smart00165        4 KIDQLLEMGFSREEALKALRAANG-NVERAAEYLL   37 (37)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence            578999999999999999999987 6888888874

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.43  E-value=0.037  Score=61.57  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||++||.||.+..+.++.-.--.++++|+++...+.++.+....+.....++.+|.+++....    ....+.||
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD  327 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD  327 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence            45789999999999998887652111247899999998888877655443222234556766543110    00125799


Q ss_pred             EEEecCCCCCccc
Q 006172          604 FVICQNSVPQIPN  616 (658)
Q Consensus       604 LVIGGpPCQ~FS~  616 (658)
                      .|+-.+||.+...
T Consensus       328 ~Vl~DaPCSg~G~  340 (434)
T PRK14901        328 RILLDAPCSGLGT  340 (434)
T ss_pred             EEEEeCCCCcccc
Confidence            9999999988543

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=95.43  E-value=0.011  Score=48.60  Aligned_cols=37  Identities=30%  Similarity=0.487  Sum_probs=27.9

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQD--------NVDLLLETLIE   50 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~--------d~d~iLE~LLt   50 (658)
                      .++++|..|||+.+.|..|++..|=.        ..+.|||.||.
T Consensus        11 ~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELLk   55 (55)
T PF09288_consen   11 DLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELLK   55 (55)
T ss_dssp             HHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT-
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHhC
Confidence            48899999999999999999998732        35689999984

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.41  E-value=0.032  Score=55.99  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=57.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+...+....-. ..++++|+++.+.+..+.+....+.....++.+|+.+.-         ..+.||
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD  156 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD  156 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence            4468999999999999988876322 247899999999888877654432222234455654311         125799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+.-||+...+
T Consensus       157 ~Vi~npPy~~~~  168 (251)
T TIGR03534       157 LIVSNPPYIPEA  168 (251)
T ss_pred             EEEECCCCCchh
Confidence            999999988765

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.29  E-value=0.022  Score=61.78  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-----h---HHHhhhc
Q 006172          527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----K---FESLIHK  598 (658)
Q Consensus       527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~-----~---Ie~l~~~  598 (658)
                      ++||||||+|.+++.|-..+   +-|++||+++.+.+.-+.+-...+-....++..+..++...     .   +..+...
T Consensus       199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            79999999999999997765   45899999999988777665433222222334444443321     0   1100011


Q ss_pred             cCCccEEEecCC
Q 006172          599 LGSIDFVICQNS  610 (658)
Q Consensus       599 ~g~~DLVIGGpP  610 (658)
                      ...+|+|+==||
T Consensus       276 ~~~~d~vilDPP  287 (352)
T PF05958_consen  276 SFKFDAVILDPP  287 (352)
T ss_dssp             CTTESEEEE---
T ss_pred             hcCCCEEEEcCC
Confidence            236889987777

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.28  E-value=0.043  Score=61.24  Aligned_cols=86  Identities=14%  Similarity=0.270  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||++||.||.+..+..+ |-. -.++++|+++...+.++.+....+.....+...|.+++..     .  ..+.|
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~--~~~~f  308 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----Y--VQDTF  308 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----h--hhccC
Confidence            3568999999999998877654 111 2478999999999998887654432222244566554431     1  12469


Q ss_pred             cEEEecCCCCCcccC
Q 006172          603 DFVICQNSVPQIPNS  617 (658)
Q Consensus       603 DLVIGGpPCQ~FS~a  617 (658)
                      |.|+-=+||.++...
T Consensus       309 D~Vl~DaPCsg~G~~  323 (431)
T PRK14903        309 DRILVDAPCTSLGTA  323 (431)
T ss_pred             CEEEECCCCCCCccc
Confidence            999999999888653

>cd00194 UBA Ubiquitin Associated domain

Probab=95.21  E-value=0.029  Score=41.47  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=31.1

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI   49 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL   49 (658)
                      .++.++.|||+++.|.+|++..+. |.+.-+++|+
T Consensus         4 ~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~   37 (38)
T cd00194           4 KLEQLLEMGFSREEARKALRATNN-NVERAVEWLL   37 (38)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHh
Confidence            578999999999999999999998 8888899886

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.19  E-value=0.084  Score=58.61  Aligned_cols=107  Identities=20%  Similarity=0.221  Sum_probs=75.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCCc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      |=+||+|||=.||+++..-..|-.  -+++||++..+...-+.|..-++..+  ..++.+|+-+.    |.....+-..|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f  291 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF  291 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence            678999999999999999999973  47899999999998888765443322  22455665433    22222233489


Q ss_pred             cEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          603 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       603 DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      ||||-=||  .|+.+.              +   +. .+++..|.+++.....+.
T Consensus       292 DlIilDPP--sF~r~k--------------~---~~-~~~~rdy~~l~~~~~~iL  326 (393)
T COG1092         292 DLIILDPP--SFARSK--------------K---QE-FSAQRDYKDLNDLALRLL  326 (393)
T ss_pred             cEEEECCc--ccccCc--------------c---cc-hhHHHHHHHHHHHHHHHc
Confidence            99999999  566211              1   12 668888988888776543

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.07  E-value=0.042  Score=60.57  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             CCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +.+|||+|||+|.+++-+. ..|.  ..|+++|+++.+.+..+.+...++.....+..+|+..+        +...+.||
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD  127 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD  127 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence            3689999999999998874 4564  45899999999999998876433222222344454332        11124689


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+-=||
T Consensus       128 ~V~lDP~  134 (382)
T PRK04338        128 VVDIDPF  134 (382)
T ss_pred             EEEECCC
Confidence            9987765

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.04  E-value=0.086  Score=56.21  Aligned_cols=83  Identities=23%  Similarity=0.295  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+||+|||=.||+++..-..|-.  -|++||.++.+....+.++.-++..  ...++..|+-+.    +.. +++.+.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~  195 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR  195 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence            3569999999999999999999963  4789999999999888887644322  112344555432    111 234578


Q ss_pred             ccEEEecCCCCCcc
Q 006172          602 IDFVICQNSVPQIP  615 (658)
Q Consensus       602 ~DLVIGGpPCQ~FS  615 (658)
                      ||+||-=||  .|+
T Consensus       196 fD~IIlDPP--sF~  207 (286)
T PF10672_consen  196 FDLIILDPP--SFA  207 (286)
T ss_dssp             EEEEEE--S--SEE
T ss_pred             CCEEEECCC--CCC
Confidence            999999999  665

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.085  Score=59.81  Aligned_cols=88  Identities=23%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCccc
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD   94 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~   94 (658)
                      ++.++++||||.+..+||+--.|..|++.-++.|...-.            |.+.+|      +-....+-|+.     +
T Consensus       561 ~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMd------------DPdlnd------P~~~~~~vPKk-----D  617 (749)
T COG5207         561 LIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMD------------DPDLND------PFVPPPNVPKK-----D  617 (749)
T ss_pred             HHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhcc------------CcccCC------CCCCCCCCCcc-----c
Confidence            789999999999999999999999999999999987421            222222      11122222222     2


Q ss_pred             cchhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172           95 EGLHIEKRASLLMMNFSVNEVDFALDKLGKD  125 (658)
Q Consensus        95 ~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d  125 (658)
                      .+....++.+|+.|||......+|+-....+
T Consensus       618 keVdE~~~~Slle~Gln~n~~Rkal~~~n~d  648 (749)
T COG5207         618 KEVDESKARSLLENGLNPNLCRKALMDMNTD  648 (749)
T ss_pred             ccccHHHHHHHHHcCCCHHHHHHHHHHccCC
Confidence            3334567899999999999999998875444

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=94.94  E-value=0.03  Score=41.69  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETL   48 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~L   48 (658)
                      ..+.+++.|||+++.+.+|++..|. |.+.=+++|
T Consensus         4 ~~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L   37 (37)
T PF00627_consen    4 EKVQQLMEMGFSREQAREALRACNG-NVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence            3578999999999999999999988 888888776

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=94.87  E-value=0.042  Score=59.70  Aligned_cols=83  Identities=8%  Similarity=0.061  Sum_probs=54.2

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH--h--hhc---
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK---  598 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~--l--~~~---  598 (658)
                      -+|||||||.|.+++.|.+..   +-+++||+++.+.+..+.+....+-....++.+|+.++-......  +  ...   
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            369999999999999988765   258899999999999988765432222234566765543211000  0  000   


Q ss_pred             -cCCccEEEecCCC
Q 006172          599 -LGSIDFVICQNSV  611 (658)
Q Consensus       599 -~g~~DLVIGGpPC  611 (658)
                       ...+|+|+=-||=
T Consensus       276 ~~~~~d~v~lDPPR  289 (353)
T TIGR02143       276 KSYNCSTIFVDPPR  289 (353)
T ss_pred             ccCCCCEEEECCCC
Confidence             0137999999993

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=94.72  E-value=0.018  Score=60.14  Aligned_cols=51  Identities=16%  Similarity=0.372  Sum_probs=46.1

Q ss_pred             ccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172          468 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  518 (658)
Q Consensus       468 ~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL  518 (658)
                      +|+=++|.|+-|++|||.++-=-.+.+...||++||||.+|.+++++.+.|
T Consensus       286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL  336 (338)
T KOG0919|consen  286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL  336 (338)
T ss_pred             HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence            677889999999999999987667888999999999999999999987765

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.68  E-value=0.036  Score=62.95  Aligned_cols=88  Identities=11%  Similarity=0.035  Sum_probs=53.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcC--------CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  595 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aG--------i~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l  595 (658)
                      ...+|+|..||.|++-+++-...        +. ..+.++|||+.+....+..+...+..+..+..+|.-.-+...   .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~---~  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN---I  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc---c
Confidence            45789999999999988875422        22 357899999999887776554332111112222211100000   0


Q ss_pred             hhccCCccEEEecCCCCCcc
Q 006172          596 IHKLGSIDFVICQNSVPQIP  615 (658)
Q Consensus       596 ~~~~g~~DLVIGGpPCQ~FS  615 (658)
                      ....+.||+|||=||=-...
T Consensus       107 ~~~~~~fD~IIgNPPy~~~k  126 (524)
T TIGR02987       107 ESYLDLFDIVITNPPYGRLK  126 (524)
T ss_pred             ccccCcccEEEeCCCccccC
Confidence            01236899999999977553

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=94.43  E-value=1  Score=43.17  Aligned_cols=124  Identities=18%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCC
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE   89 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e   89 (658)
                      .-|+..+...||+++.|+.||++.   |=-|.....+..+......  +                               
T Consensus        29 ~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~~--~-------------------------------   75 (157)
T PRK00117         29 AELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRARK--G-------------------------------   75 (157)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--C-------------------------------
Confidence            338899999999999999999876   4335557777766655211  0                               


Q ss_pred             CCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172           90 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  169 (658)
Q Consensus        90 ~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~  169 (658)
                           .+ .......|..-||+.+.|..||+++.++ . .+++..++.-......    .               .+. .
T Consensus        76 -----~g-~~~I~~~L~~kGi~~~~I~~~l~~~~~d-~-~e~a~~~~~k~~~~~~----~---------------~~~-~  127 (157)
T PRK00117         76 -----YG-PRRIRQELRQKGVDREIIEEALAELDID-W-EELARELARKKFRRPL----P---------------DDA-K  127 (157)
T ss_pred             -----ch-HHHHHHHHHHcCCCHHHHHHHHHHcCcc-H-HHHHHHHHHHHcCCCC----C---------------CCH-H
Confidence                 00 3456688999999999999999998732 2 2333333322222110    0               011 1


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 006172          170 TMEITL-QLLEMGFSENQVSLAIEKFGSK  197 (658)
Q Consensus       170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~d  197 (658)
                      ...|+. +|..=||+-+.+..||+....+
T Consensus       128 ~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~  156 (157)
T PRK00117        128 EKAKLVRFLARRGFSMDVIQRVLRNALDD  156 (157)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence            235664 9999999999999999876554

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=94.30  E-value=0.13  Score=51.30  Aligned_cols=54  Identities=20%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             hcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          514 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       514 ~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      ++..|......+.+|||+.||.|.+...+...+.   .++++|+++......+....
T Consensus        45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~   98 (219)
T TIGR02021        45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ   98 (219)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence            3444442122467899999999999999988875   46899999998877766543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=94.28  E-value=0.084  Score=54.68  Aligned_cols=74  Identities=15%  Similarity=0.068  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+-||.|.++..+.+.+.   -++++|+|+.....++.....  .....++.+|+.++.-          ..+|
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~----------~~~d   93 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL----------PEFN   93 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc----------hhce
Confidence            456899999999999999999875   378999999988887765432  1223356778776542          2468


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+|-+|=+
T Consensus        94 ~Vv~NlPy~  102 (258)
T PRK14896         94 KVVSNLPYQ  102 (258)
T ss_pred             EEEEcCCcc
Confidence            999987744

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=94.26  E-value=0.14  Score=51.13  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|.+...+.+. |-. .-++++|+++...+..+......+.....++.+|+.++..        ..+.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  115 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF  115 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence            4578999999999998888654 322 2478999999887776654332222222344566655431        12579


Q ss_pred             cEEEecCCCCCc
Q 006172          603 DFVICQNSVPQI  614 (658)
Q Consensus       603 DLVIGGpPCQ~F  614 (658)
                      |+|+.+...+.+
T Consensus       116 D~V~~~~~l~~~  127 (231)
T TIGR02752       116 DYVTIGFGLRNV  127 (231)
T ss_pred             cEEEEecccccC
Confidence            999987665544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=93.91  E-value=0.13  Score=53.64  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+=||.|.++..|.+.|-   -++++|+|+.....++..+..   +...++.+|+.++....+        ..+
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~--------~~~  107 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL--------QPL  107 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc--------Ccc
Confidence            456899999999999999998874   478999999998888764421   234467888887754321        158


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|||-+|
T Consensus       108 ~vv~NlP  114 (272)
T PRK00274        108 KVVANLP  114 (272)
T ss_pred             eEEEeCC
Confidence            8999888

>PRK14968 putative methyltransferase; Provisional

Probab=93.85  E-value=0.19  Score=48.02  Aligned_cols=78  Identities=15%  Similarity=0.096  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-++||+.||.|.+...+.+.|.   .++++|+++.+....+.+....+...  ..+...|..+-    +   .  ...
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~---~--~~~   90 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F---R--GDK   90 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c---c--ccC
Confidence            446799999999999999988875   36789999988777666543222111  22334554321    1   1  126


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      +|+|+..+|+..
T Consensus        91 ~d~vi~n~p~~~  102 (188)
T PRK14968         91 FDVILFNPPYLP  102 (188)
T ss_pred             ceEEEECCCcCC
Confidence            999999998754

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=93.78  E-value=0.12  Score=57.11  Aligned_cols=77  Identities=12%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             CCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +++|||+|||+|-..+-+-.-  |.  +.|+++|+|+.|...++.+....+.....+..+|...+-.       .....|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f  115 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF  115 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence            489999999999776655443  65  4689999999999999987643321111233344332211       112458


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|.==||
T Consensus       116 DvIdlDPf  123 (374)
T TIGR00308       116 HVIDIDPF  123 (374)
T ss_pred             CEEEeCCC
Confidence            88866554

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=93.72  E-value=0.18  Score=56.06  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      .+-+|||++||.||.+.-+.++ + . -.++++|+++...+..+.+....+.. ..+  ..+|...+..      ....+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~------~~~~~  308 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ------WAENE  308 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc------ccccc
Confidence            3578999999999999887764 3 2 24789999999988888776543221 111  2334332221      01225


Q ss_pred             CccEEEecCCCCCcccC
Q 006172          601 SIDFVICQNSVPQIPNS  617 (658)
Q Consensus       601 ~~DLVIGGpPCQ~FS~a  617 (658)
                      .||.|+-.+||.++..-
T Consensus       309 ~fD~VllDaPcSg~G~~  325 (426)
T TIGR00563       309 QFDRILLDAPCSATGVI  325 (426)
T ss_pred             ccCEEEEcCCCCCCccc
Confidence            79999999999998754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=93.70  E-value=0.12  Score=53.11  Aligned_cols=75  Identities=19%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+.||.|.++..+.+.+-+   ++++|+|+.....++..+..  .....++.+|+.++....       +...+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~   96 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL   96 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence            4578999999999999999999843   78999999998888765532  122335677887665321       11124


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+|..|
T Consensus        97 ~vvsNlP  103 (253)
T TIGR00755        97 KVVSNLP  103 (253)
T ss_pred             eEEEcCC
Confidence            8888887

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=93.44  E-value=0.25  Score=43.21  Aligned_cols=74  Identities=23%  Similarity=0.342  Sum_probs=52.0

Q ss_pred             CCcccccCCCCChHHHHHHH--cCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 006172          525 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~--aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +-+||||=||.|.+.+.+.+  .|.+   ++++|+++...+..+....... .....++.+|+ ....       ...++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~   70 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP   70 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence            45799999999999999999  7764   7899999999988887662221 12233456777 2211       12357


Q ss_pred             ccEEEecC
Q 006172          602 IDFVICQN  609 (658)
Q Consensus       602 ~DLVIGGp  609 (658)
                      +|+|+...
T Consensus        71 ~D~v~~~~   78 (112)
T PF12847_consen   71 FDLVICSG   78 (112)
T ss_dssp             EEEEEECS
T ss_pred             CCEEEECC
Confidence            99998655

...

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=93.38  E-value=0.18  Score=54.83  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172          527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  606 (658)
Q Consensus       527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI  606 (658)
                      +||||.||.|.+...+.+.+-.. .+.++|+++.+....+.+....+-.+ .++..|+.+    .+      .+.||+|+
T Consensus       199 ~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~----~~------~~~fDlIv  266 (342)
T PRK09489        199 KVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLEG-EVFASNVFS----DI------KGRFDMII  266 (342)
T ss_pred             eEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCC-EEEEccccc----cc------CCCccEEE
Confidence            79999999999998888765322 37889999998887776654432212 233344421    11      25799999


Q ss_pred             ecCCC
Q 006172          607 CQNSV  611 (658)
Q Consensus       607 GGpPC  611 (658)
                      ..||=
T Consensus       267 sNPPF  271 (342)
T PRK09489        267 SNPPF  271 (342)
T ss_pred             ECCCc
Confidence            98873

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=93.34  E-value=0.28  Score=49.12  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+.||.|.++..|.+..-+--.++++|+++......+.+....+.....++.+|..+.-.        ....||
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD  148 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence            467899999999999988876532111378999999988777766554332223344566543211        124799


Q ss_pred             EEEecCCCCCc
Q 006172          604 FVICQNSVPQI  614 (658)
Q Consensus       604 LVIGGpPCQ~F  614 (658)
                      +|+-.+++...
T Consensus       149 ~Ii~~~~~~~~  159 (215)
T TIGR00080       149 RIYVTAAGPKI  159 (215)
T ss_pred             EEEEcCCcccc
Confidence            99877766544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=93.29  E-value=0.44  Score=54.33  Aligned_cols=85  Identities=16%  Similarity=0.102  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchhhhHHHHH
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLL  178 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m~k~~~L~  178 (658)
                      -..+.+|++||||++.+.+|+---|..++ +.-.+.|+.+-.--       | .+|-=.......-.+---+..|..+|+
T Consensus       559 qs~I~qL~~mGfp~~~~~rAL~~tgNqDa-EsAMNWLFqHMdDP-------d-lndP~~~~~~vPKkDkeVdE~~~~Sll  629 (749)
T COG5207         559 QSLIRQLVDMGFPEEDAARALGITGNQDA-ESAMNWLFQHMDDP-------D-LNDPFVPPPNVPKKDKEVDESKARSLL  629 (749)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhhccCcch-HHHHHHHHhhccCc-------c-cCCCCCCCCCCCcccccccHHHHHHHH
Confidence            45789999999999999999999999877 77888887662111       1 000000000000000000124667999


Q ss_pred             hcCCCHHHHHHHHH
Q 006172          179 EMGFSENQVSLAIE  192 (658)
Q Consensus       179 ~MGf~e~Eas~AI~  192 (658)
                      +|||....++-|+=
T Consensus       630 e~Gln~n~~Rkal~  643 (749)
T COG5207         630 ENGLNPNLCRKALM  643 (749)
T ss_pred             HcCCCHHHHHHHHH
Confidence            99999999998764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=93.09  E-value=0.15  Score=54.00  Aligned_cols=78  Identities=15%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172          527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  606 (658)
Q Consensus       527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI  606 (658)
                      +||||.||.|-+.+++...+-. -.|+++||++.|.++-+.|...++-       .++..+.. ++-.  .-.+.||+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~-dlf~--~~~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQS-DLFE--PLRGKFDLIV  181 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEee-eccc--ccCCceeEEE
Confidence            7999999999999999998854 3678999999999888877654421       22333333 2211  1125899999


Q ss_pred             ecCCCCCcc
Q 006172          607 CQNSVPQIP  615 (658)
Q Consensus       607 GGpPCQ~FS  615 (658)
                      .-||==+-.
T Consensus       182 sNPPYip~~  190 (280)
T COG2890         182 SNPPYIPAE  190 (280)
T ss_pred             eCCCCCCCc
Confidence            999977766

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=93.05  E-value=0.45  Score=41.99  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=47.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+||||.||.|.+..-+-+..-. ..++++|+++.+....+.+....+.....+..+|+......       ..+.+|
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D   90 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD   90 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence            3468999999999999888765211 34789999999888877654433222222334554422110       124789


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+-
T Consensus        91 ~v~~   94 (124)
T TIGR02469        91 RVFI   94 (124)
T ss_pred             EEEE
Confidence            8875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=93.05  E-value=0.21  Score=49.29  Aligned_cols=75  Identities=12%  Similarity=0.125  Sum_probs=50.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.+|||+-||.|-+++.+..++-. ..++++|+++......+.+....+.....++.+|+.++..         .+.+|+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~  112 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV  112 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence            678999999999888777655522 2378999999877777766554332223355677765421         257999


Q ss_pred             EEecC
Q 006172          605 VICQN  609 (658)
Q Consensus       605 VIGGp  609 (658)
                      |+...
T Consensus       113 I~s~~  117 (181)
T TIGR00138       113 ITSRA  117 (181)
T ss_pred             EEehh
Confidence            98653

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.35  Score=56.52  Aligned_cols=99  Identities=20%  Similarity=0.284  Sum_probs=62.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCC---CCCCCCCCCCCCCCCcccccchhhhHH
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKET---DDAPHDNDGTNEDKSDETLYGTMEITL  175 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~---~D~~~~~d~~~ed~~~e~~~~~m~k~~  175 (658)
                      ...+.+|+.||||++-..+|+=--|...+ +.-...|+.+-.--..++--   +-....++.    .-+      -+-.-
T Consensus       572 ~s~i~qL~~MGFp~eac~rAly~tgN~~a-EaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~----~~~------e~~v~  640 (763)
T KOG0944|consen  572 RSVISQLVEMGFPEEACRRALYYTGNSGA-EAASNWLMEHMDDPDIDDPFVVPGNSPKADAR----EVD------EESVA  640 (763)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhhhcCccH-HHHHHHHHHhccCcccCCceecCCCCCccccC----CCC------hhHhe
Confidence            34679999999999999999999988876 55555555542111100000   000000000    000      12233


Q ss_pred             HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006172          176 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG  210 (658)
Q Consensus       176 ~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~Aa  210 (658)
                      +++.|||+..+|..|..-  .+..|+.+||-|++-
T Consensus       641 si~smGf~~~qa~~aL~~--~n~nveravDWif~h  673 (763)
T KOG0944|consen  641 SIVSMGFSRNQAIKALKA--TNNNVERAVDWIFSH  673 (763)
T ss_pred             eeeeecCcHHHHHHHHHh--cCccHHHHHHHHHhc
Confidence            889999999999988765  356799999999864

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=92.87  E-value=0.1  Score=54.82  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             HhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHc------CCceeeEEEeeCCHHHHHHHHHHhhhcC
Q 006172          500 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG  573 (658)
Q Consensus       500 k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a------Gi~~k~vvavEid~~a~~t~k~~~~~~n  573 (658)
                      |.+|..|....++.++.-+-... .+-+|+|.+||.|||-+++.+.      -+.-..++++|+++.+....+.+..-++
T Consensus        23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~  101 (311)
T PF02384_consen   23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG  101 (311)
T ss_dssp             TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence            44566666666666654444332 3567999999999998887651      0111357899999998876554322221


Q ss_pred             CCCC--ccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 006172          574 QTGE--LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  614 (658)
Q Consensus       574 ~~g~--l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  614 (658)
                      -...  .+..+|.-  .....    .....+|+|+|-||=-..
T Consensus       102 ~~~~~~~i~~~d~l--~~~~~----~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  102 IDNSNINIIQGDSL--ENDKF----IKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHCBGCEEEES-TT--TSHSC----TST--EEEEEEE--CTCE
T ss_pred             cccccccccccccc--ccccc----ccccccccccCCCCcccc
Confidence            1011  12233321  11000    013579999999986655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=92.78  E-value=0.22  Score=52.44  Aligned_cols=46  Identities=17%  Similarity=0.180  Sum_probs=38.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  571 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  571 (658)
                      .+.+|||+.||.|.+++++.++|.  ..++++|+++.+....+.+...
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~  204 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAEL  204 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence            457899999999999999999986  3588999999998887776543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.76  E-value=0.17  Score=49.73  Aligned_cols=76  Identities=17%  Similarity=0.117  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+++||=||||-++.|+...+-  +.++++|||+.|..++.+|-.... -...+...||.++-.        ..+-||
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfE-vqidlLqcdildle~--------~~g~fD  116 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFE-VQIDLLQCDILDLEL--------KGGIFD  116 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhh-hhhheeeeeccchhc--------cCCeEe
Confidence            578899999999999999999986  468999999999999877543321 011133455544432        236789


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      .++=-||
T Consensus       117 taviNpp  123 (185)
T KOG3420|consen  117 TAVINPP  123 (185)
T ss_pred             eEEecCC
Confidence            8887776

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=92.48  E-value=0.24  Score=55.61  Aligned_cols=78  Identities=12%  Similarity=0.020  Sum_probs=52.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.++|||.||.|.+.+.+.+..-. ..+.++|+++.+.+..+.+....+ ....++.+|+.+..   +    ...+.||+
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FDL  322 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWDI  322 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCccE
Confidence            458999999999999887754322 247899999999998887764432 12224456654321   0    01246999


Q ss_pred             EEecCCC
Q 006172          605 VICQNSV  611 (658)
Q Consensus       605 VIGGpPC  611 (658)
                      |+.-||=
T Consensus       323 IVSNPPY  329 (423)
T PRK14966        323 IVSNPPY  329 (423)
T ss_pred             EEECCCC
Confidence            9988873

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=92.38  E-value=0.23  Score=52.91  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             Hhhhhhh--cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCC
Q 006172          500 ESLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG  576 (658)
Q Consensus       500 k~Lgnsf--qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g  576 (658)
                      |.||-.|  +..++..++..+.  ...+-+|||+-||.|.++..|...+-   -++++|+|+.....++......+ ...
T Consensus        12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~   86 (294)
T PTZ00338         12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK   86 (294)
T ss_pred             CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            4456666  3334444444332  22456899999999999999888774   37899999999988887654322 122


Q ss_pred             CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 006172          577 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       577 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  612 (658)
                      ..++.+|+.++.          +..+|+|++-.|=+
T Consensus        87 v~ii~~Dal~~~----------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         87 LEVIEGDALKTE----------FPYFDVCVANVPYQ  112 (294)
T ss_pred             EEEEECCHhhhc----------ccccCEEEecCCcc
Confidence            335677776543          13578999877654

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=92.30  E-value=0.18  Score=41.60  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDA  126 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~  126 (658)
                      -+.+..|+.|||+.+-|..|+.+.|-+.
T Consensus        10 ~~lVd~F~~mGF~~dkVvevlrrlgik~   37 (55)
T PF09288_consen   10 KDLVDQFENMGFERDKVVEVLRRLGIKS   37 (55)
T ss_dssp             HHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            4578999999999999999999998755

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=92.15  E-value=0.24  Score=50.82  Aligned_cols=78  Identities=21%  Similarity=0.210  Sum_probs=53.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+.+|||+=||.|.++..|.+.|.+   ++++|+++...+..+......+.. ...++.+|+.++..     .  ..+.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP  112 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence            45679999999999999999999864   678999999888777654332211 11244566665532     1  1257


Q ss_pred             ccEEEecCC
Q 006172          602 IDFVICQNS  610 (658)
Q Consensus       602 ~DLVIGGpP  610 (658)
                      ||+|+....
T Consensus       113 fD~V~~~~v  121 (255)
T PRK11036        113 VDLILFHAV  121 (255)
T ss_pred             CCEEEehhH
Confidence            999996554

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=92.09  E-value=0.4  Score=51.90  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=36.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      .+.+|||+-||.|.+...|.+.|.+   |++||+++...+..+.+.
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~  173 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHA  173 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHH
Confidence            4578999999999999999998864   689999999888777543

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=92.00  E-value=0.32  Score=38.22  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=29.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHh--CCCCchHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVD  133 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~--G~d~~i~~L~d  133 (658)
                      ..+.+..|+.+||++.+|.+|+.+.  +++.++++++-
T Consensus         3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik   40 (47)
T PF07499_consen    3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIK   40 (47)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHH
Confidence            4678899999999999999999998  78888777664

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=91.80  E-value=0.41  Score=47.50  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=37.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  571 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  571 (658)
                      .+.+|||+-||.|.+...|.+.|..   +.++|+++......+..+..
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~  107 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE  107 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence            4578999999999999999988863   78999999988877766543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=91.59  E-value=0.61  Score=46.29  Aligned_cols=73  Identities=19%  Similarity=0.196  Sum_probs=48.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.+|||+=||.|..++-|.+.|++   |.++|+++.+....+..-...+.........|+.++..         .+.||+
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~fD~   98 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---------DGEYDF   98 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------CCCcCE
Confidence            468999999999999999999974   68899999987776654333221112223345443321         135777


Q ss_pred             EEecC
Q 006172          605 VICQN  609 (658)
Q Consensus       605 VIGGp  609 (658)
                      |+...
T Consensus        99 I~~~~  103 (197)
T PRK11207         99 ILSTV  103 (197)
T ss_pred             EEEec
Confidence            77544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=91.46  E-value=0.32  Score=50.05  Aligned_cols=51  Identities=24%  Similarity=0.301  Sum_probs=40.7

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      |..+...+.+|||+-||.|.+.+.+.+.|..  .++++|+|+.+.+..+.+..
T Consensus       113 l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~  163 (250)
T PRK00517        113 LEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE  163 (250)
T ss_pred             HHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence            3333346689999999999999999999864  37899999999887776543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=91.46  E-value=0.53  Score=46.84  Aligned_cols=80  Identities=23%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.++..|.+++-   -++++|+++......+.++...+.....+..+|..+.    +    ...+.||
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~fD  146 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----W----PAYAPFD  146 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----C----CcCCCcC
Confidence            458999999999999887777753   3789999999888777776544322222344554321    1    1125799


Q ss_pred             EEEecCCCCCc
Q 006172          604 FVICQNSVPQI  614 (658)
Q Consensus       604 LVIGGpPCQ~F  614 (658)
                      +|+-..+|..+
T Consensus       147 ~I~~~~~~~~~  157 (212)
T PRK00312        147 RILVTAAAPEI  157 (212)
T ss_pred             EEEEccCchhh
Confidence            98887776654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=91.33  E-value=0.63  Score=45.38  Aligned_cols=46  Identities=17%  Similarity=0.160  Sum_probs=36.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      .+.+|||+.||.|.+.+.+.+.+-. .-++++|+++.+.+..+.+..
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~   76 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQ   76 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            4568999999999999988876532 247899999998888776544

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=91.32  E-value=0.36  Score=50.70  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=53.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +-++|||=||+|.+.+.+..-==+ .-+++||+++.+..--+++-...+. ....++..||.++....      ....||
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~------~~~~fD  117 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL------VFASFD  117 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc------cccccC
Confidence            678999999999999988765212 2467899999887655553322111 11224566776554321      235799


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +||.-||=-.
T Consensus       118 ~Ii~NPPyf~  127 (248)
T COG4123         118 LIICNPPYFK  127 (248)
T ss_pred             EEEeCCCCCC
Confidence            9999998544

>KOG2730 consensus Methylase [General function prediction only]

Probab=91.12  E-value=0.18  Score=52.34  Aligned_cols=103  Identities=16%  Similarity=0.145  Sum_probs=62.4

Q ss_pred             cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcccccccc
Q 006172          507 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQ  585 (658)
Q Consensus       507 qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~  585 (658)
                      ++.-++-|+.--+.-+.+.-.+||-|||+||-..=|-.-|-.   |+++|||+.....-+++-+-.+-+ -..++.+|+-
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l  153 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL  153 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence            444455555444443446677999999999999999988863   789999999876655432211111 1113456664


Q ss_pred             ccChhhHHHhhhccCCccEEEecCCCCCccc
Q 006172          586 ALTTKKFESLIHKLGSIDFVICQNSVPQIPN  616 (658)
Q Consensus       586 ~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  616 (658)
                      ++-. .+ ++.+  .-+|+|.+.||=-+-|.
T Consensus       154 d~~~-~l-q~~K--~~~~~vf~sppwggp~y  180 (263)
T KOG2730|consen  154 DLAS-KL-KADK--IKYDCVFLSPPWGGPSY  180 (263)
T ss_pred             HHHH-HH-hhhh--heeeeeecCCCCCCcch
Confidence            3321 11 1111  23789988888766664

>PLN02244 tocopherol O-methyltransferase

Probab=90.87  E-value=0.68  Score=50.00  Aligned_cols=75  Identities=23%  Similarity=0.210  Sum_probs=49.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      ..+.+|||+-||.|++...|.+. |.+   ++++|+++...+..+......+. ....++.+|+.++.-        ..+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~---v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~  185 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGAN---VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDG  185 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCC
Confidence            34578999999999999888774 653   67899999876665543322211 112345667765431        125


Q ss_pred             CccEEEec
Q 006172          601 SIDFVICQ  608 (658)
Q Consensus       601 ~~DLVIGG  608 (658)
                      .||+|+..
T Consensus       186 ~FD~V~s~  193 (340)
T PLN02244        186 QFDLVWSM  193 (340)
T ss_pred             CccEEEEC
Confidence            79999853

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=90.74  E-value=0.83  Score=45.63  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      ++++.+.+|||+=||.|.+++.+.++.-. ..++++|+++......+.+....+.....++.+|+.++..         .
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~  110 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E  110 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence            34445789999999999988877653322 2478999999887777766554432223345566655432         2


Q ss_pred             CCccEEEec
Q 006172          600 GSIDFVICQ  608 (658)
Q Consensus       600 g~~DLVIGG  608 (658)
                      +.||+|+..
T Consensus       111 ~~fDlV~~~  119 (187)
T PRK00107        111 EKFDVVTSR  119 (187)
T ss_pred             CCccEEEEc
Confidence            479999963

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=90.53  E-value=0.23  Score=53.50  Aligned_cols=57  Identities=25%  Similarity=0.249  Sum_probs=44.1

Q ss_pred             hhhhcccccccCCCCCcccccCCCCChHHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          511 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       511 i~~~lsvLK~~f~~~l~vLdLFSGiGGlsl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      +.--++|++ ++..+-.++|||||||=+++ -+-.+|-  +.|+|||++|.+...|++.-.
T Consensus       182 ~~EK~Rv~~-~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~  239 (351)
T KOG1227|consen  182 IKEKKRVLN-TSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE  239 (351)
T ss_pred             HHHHHHhhh-cccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence            333344443 34456779999999999999 6779998  469999999999999998643

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=90.47  E-value=0.73  Score=45.58  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=47.1

Q ss_pred             CCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||+.||.|.+++.+-+ +|-. .-++++|+++...+..+.+....+ .....+..+|..++    +.   ...+.
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~---~~~~~  111 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LF---TINEK  111 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hh---hcCCC
Confidence            456899999999999887754 3422 247899999998877665543221 11111223443321    11   11257


Q ss_pred             ccEEEecC
Q 006172          602 IDFVICQN  609 (658)
Q Consensus       602 ~DLVIGGp  609 (658)
                      +|+|+-|.
T Consensus       112 ~D~V~~~~  119 (198)
T PRK00377        112 FDRIFIGG  119 (198)
T ss_pred             CCEEEECC
Confidence            99988654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=90.45  E-value=0.59  Score=53.41  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=51.7

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +.+|||+.||.|.+.+++...- +-..++++|+++.+.+..+.+....+... ..++.+|+.+       .+  ..+.||
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD  208 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD  208 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence            4689999999999998876431 11247899999999988887654332111 1123344321       11  124799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+..||=-+.+
T Consensus       209 lIvsNPPYi~~~  220 (506)
T PRK01544        209 FIVSNPPYISHS  220 (506)
T ss_pred             EEEECCCCCCch
Confidence            999999855443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=90.39  E-value=0.94  Score=45.23  Aligned_cols=82  Identities=21%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI-~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|.+...+.+.. +-..+++||+++...+..+.+....+.....++.+|+ ..+.     .. ...+.|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~-~~~~~~  112 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DM-FPDGSL  112 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HH-cCcccc
Confidence            45789999999999999886653 2235889999999888877765433222223455666 3221     11 112569


Q ss_pred             cEEEecCCCC
Q 006172          603 DFVICQNSVP  612 (658)
Q Consensus       603 DLVIGGpPCQ  612 (658)
                      |+|+--+|.+
T Consensus       113 D~V~~~~~~p  122 (202)
T PRK00121        113 DRIYLNFPDP  122 (202)
T ss_pred             ceEEEECCCC
Confidence            9998766543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=90.24  E-value=0.45  Score=52.69  Aligned_cols=75  Identities=13%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~----l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      -+||||.||.|-+.+.+.+.+-. .-+.++|+++.+...-+.++... ....    .+...|+.+       .+  ..+.
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~  298 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR  298 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence            37999999999999998877522 24688999999988888777533 2111    122333311       11  1246


Q ss_pred             ccEEEecCCC
Q 006172          602 IDFVICQNSV  611 (658)
Q Consensus       602 ~DLVIGGpPC  611 (658)
                      ||+|+.-||.
T Consensus       299 fDlIlsNPPf  308 (378)
T PRK15001        299 FNAVLCNPPF  308 (378)
T ss_pred             EEEEEECcCc
Confidence            9999998885

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=90.21  E-value=0.59  Score=46.08  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=45.4

Q ss_pred             CCCcccccCCCCChHHH--HHHHcCCc------eeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHH
Q 006172          524 GGLTMLSVFSGIGGAEV--TLHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES  594 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlsl--GL~~aGi~------~k~vvavEid~~a~~t~k~~~~~~n~~g~-l~~~~DI~~Lt~~~Ie~  594 (658)
                      .+-.|||-|||.|++-+  ++....+.      ...++++||++.+.+.-+.+....+.... .+...|.+++.      
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------  101 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------  101 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence            45689999999999864  44444432      00167999999998877776654432111 12334555554      


Q ss_pred             hhhccCCccEEEecCC
Q 006172          595 LIHKLGSIDFVICQNS  610 (658)
Q Consensus       595 l~~~~g~~DLVIGGpP  610 (658)
                        ...+.+|+||.=||
T Consensus       102 --~~~~~~d~IvtnPP  115 (179)
T PF01170_consen  102 --LPDGSVDAIVTNPP  115 (179)
T ss_dssp             --GTTSBSCEEEEE--
T ss_pred             --cccCCCCEEEECcc
Confidence              12257999999988

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=90.19  E-value=0.62  Score=50.29  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=35.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  568 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~  568 (658)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~  185 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERR  185 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHH
Confidence            4679999999999999999999864   68899999987766554

>PRK14135 recX recombination regulator RecX; Provisional

Probab=89.89  E-value=5.3  Score=41.48  Aligned_cols=135  Identities=17%  Similarity=0.276  Sum_probs=77.9

Q ss_pred             chhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172           12 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN   91 (658)
Q Consensus        12 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~   91 (658)
                      ...+...|...||+.+.|..||++.-+++.-..+..+... .+.....                             .. 
T Consensus       125 ~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k-~~~~~~~-----------------------------~~-  173 (263)
T PRK14135        125 PRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEK-LLKKYQK-----------------------------LP-  173 (263)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHH-HHHHhcC-----------------------------CC-
Confidence            3458999999999999999999988443221111111111 0100000                             00 


Q ss_pred             ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH--hhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172           92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA--QISENFEKETDDAPHDNDGTNEDKSDETLYG  169 (658)
Q Consensus        92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~--q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~  169 (658)
                        ......+....|..-||+.+.|..||+++..+...++-.+.+...  +...... .. +               . ..
T Consensus       174 --~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~-~~-~---------------~-~k  233 (263)
T PRK14135        174 --FKALKQKIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYS-KY-D---------------G-YE  233 (263)
T ss_pred             --HHHHHHHHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHh-cC-C---------------H-HH
Confidence              001134567889999999999999999987543222222222211  1111111 00 0               0 12


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 006172          170 TMEITL-QLLEMGFSENQVSLAIEKFGSK  197 (658)
Q Consensus       170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~d  197 (658)
                      ...|+. +|..=||+-+.+..++.....+
T Consensus       234 ~k~K~~~~L~rrGF~~~~I~~~l~~~~~~  262 (263)
T PRK14135        234 LKQKLKQALYRKGFSYDDIDSFLREYGIE  262 (263)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHhccC
Confidence            235665 9999999999999999887543

>PRK07402 precorrin-6B methylase; Provisional

Probab=89.83  E-value=0.61  Score=45.90  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=36.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  571 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  571 (658)
                      .+-+|||++||.|.+...+.+++-. ..++++|+++...+..+.+...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence            3468999999999999888765322 3578999999998888876543

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=89.76  E-value=0.61  Score=49.96  Aligned_cols=83  Identities=19%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             CcccccCCCCChHHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          526 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      ..++|++||.|.+++++ |.++ + -.+.|+|.++.|.+....|-....-.|..-++.-|.  +.+.........+..|+
T Consensus       150 ~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m--e~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  150 THILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM--ESDASDEHPLLEGKIDL  225 (328)
T ss_pred             ceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc--ccccccccccccCceeE
Confidence            36899999999999997 4555 4 467899999999987766544332223222221111  22222222234589999


Q ss_pred             EEecCCCC
Q 006172          605 VICQNSVP  612 (658)
Q Consensus       605 VIGGpPCQ  612 (658)
                      +++-||--
T Consensus       226 lvsNPPYI  233 (328)
T KOG2904|consen  226 LVSNPPYI  233 (328)
T ss_pred             EecCCCcc
Confidence            99999853

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=89.69  E-value=0.72  Score=48.33  Aligned_cols=72  Identities=33%  Similarity=0.356  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+++|||.=||.|=++.-+.++|.   .|.++|+++.+..+-+.++..+.   ..   .|=...+.+   .+....+.||
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~e---dl~~~~~~FD  126 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESG---VN---IDYRQATVE---DLASAGGQFD  126 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHH---HHHhcCCCcc
Confidence            568999999999999999999996   47899999999999888776442   11   122223333   3333337899


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|++
T Consensus       127 vV~c  130 (243)
T COG2227         127 VVTC  130 (243)
T ss_pred             EEEE
Confidence            9974

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=89.65  E-value=0.66  Score=49.98  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=45.3

Q ss_pred             cccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      |.-|..+-..+.+|||+=||.|=+++|..++|-  +-++++||||.|.++-+.|-.
T Consensus       153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~  206 (300)
T COG2264         153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR  206 (300)
T ss_pred             HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence            455666666889999999999999999999997  458999999999888776543

>PRK14135 recX recombination regulator RecX; Provisional

Probab=89.29  E-value=6.2  Score=40.97  Aligned_cols=130  Identities=14%  Similarity=0.176  Sum_probs=81.3

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCC
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE   89 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e   89 (658)
                      .-|+..+..-||+++.|..||+..   |-=|.....+..+....-.. .                               
T Consensus        75 ~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~-~-------------------------------  122 (263)
T PRK14135         75 KEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTG-D-------------------------------  122 (263)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-c-------------------------------
Confidence            448888888899999999999865   43355666665555332110 0                               


Q ss_pred             CCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172           90 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  169 (658)
Q Consensus        90 ~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~  169 (658)
                           - ...+....|...||+.+.|..||+++-++.-++.+.. +.. ........ .                 +...
T Consensus       123 -----~-g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~-~~~-k~~~~~~~-~-----------------~~~~  176 (263)
T PRK14135        123 -----K-GPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQK-LAE-KLLKKYQK-L-----------------PFKA  176 (263)
T ss_pred             -----c-chHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHH-HHH-HHHHHhcC-C-----------------CHHH
Confidence                 0 0345678899999999999999999855433322111 111 11111000 0                 0011


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 006172          170 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI  200 (658)
Q Consensus       170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~da~i  200 (658)
                      .-.|+. +|..-||+.+.+..|++.+..+...
T Consensus       177 ~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~  208 (263)
T PRK14135        177 LKQKIIQSLLTKGFSYEVIKAALEELDLEQDE  208 (263)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHcccCCCh
Confidence            224554 8999999999999999999765433

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=89.00  E-value=0.81  Score=46.49  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  565 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~  565 (658)
                      +.+-+||++.||.|--.+-|.+.|++   |+++|+++.+....
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~   72 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF   72 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence            45679999999999999999999996   78999999998754

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=88.58  E-value=0.57  Score=48.69  Aligned_cols=77  Identities=21%  Similarity=0.172  Sum_probs=57.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+||++-+|.|.++..|...|   +-++++|+|+.....++..+.  ......++.+|+.+++.....     .....
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~-----~~~~~   99 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLL-----KNQPL   99 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHC-----SSSEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhh-----cCCce
Confidence            56889999999999999999999   457899999999988887543  122334678999888764321     23556


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+|--|
T Consensus       100 ~vv~NlP  106 (262)
T PF00398_consen  100 LVVGNLP  106 (262)
T ss_dssp             EEEEEET
T ss_pred             EEEEEec
Confidence            7888776

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=88.38  E-value=1.8  Score=43.42  Aligned_cols=43  Identities=30%  Similarity=0.306  Sum_probs=35.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      .+.+|||+.||.|.+...+.+.|.+   ++++|+++......+...
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   90 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHA   90 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHH
Confidence            4678999999999999999888853   678999998876665544

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=88.34  E-value=1.4  Score=43.59  Aligned_cols=83  Identities=19%  Similarity=0.117  Sum_probs=52.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      ...++||+=||.|.+...+.+..-. ..++++|+++......++.....+.....++.+|+.++....+     ..+.+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCcee
Confidence            3457999999999999888876422 3578999999876665554443322222345666655421111     124699


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      .|+--+|.-
T Consensus        90 ~v~~~~pdp   98 (194)
T TIGR00091        90 KVFLNFPDP   98 (194)
T ss_pred             EEEEECCCc
Confidence            998877643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=88.19  E-value=1.7  Score=45.31  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=47.5

Q ss_pred             hhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEE
Q 006172          475 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI  553 (658)
Q Consensus       475 ~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~-aGi~~k~vv  553 (658)
                      .=.|+|||.-.-|+.  ++..+...               ++.+.  .+.+.+|||+=||.|+....+.+ .|.   -++
T Consensus        22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~   79 (263)
T PTZ00098         22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH   79 (263)
T ss_pred             hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence            345888887666664  55554433               11121  23557899999999998877744 354   378


Q ss_pred             EeeCCHHHHHHHHHH
Q 006172          554 SIETSETNRRILKRW  568 (658)
Q Consensus       554 avEid~~a~~t~k~~  568 (658)
                      ++|+++......+..
T Consensus        80 giD~s~~~~~~a~~~   94 (263)
T PTZ00098         80 GVDICEKMVNIAKLR   94 (263)
T ss_pred             EEECCHHHHHHHHHH
Confidence            999999876666553

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.47  E-value=1.4  Score=49.88  Aligned_cols=89  Identities=17%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             hhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCcccc
Q 006172           16 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDE   95 (658)
Q Consensus        16 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~~   95 (658)
                      +..+++|||..+++.-|++.+- +|...-|+.|-+-+.                  +=+.+.+.+      ....     
T Consensus       379 ~~rL~~mGyer~la~eaL~r~~-Ndi~~aldllq~esd------------------el~~n~~~~------p~~v-----  428 (568)
T KOG2561|consen  379 LERLVSMGYERELAAEALRRNE-NDIQKALDLLQDESD------------------ELESNKPKR------PEQV-----  428 (568)
T ss_pred             HHHHHhcchHhHHHHHHHHhcc-CcHHHHHHhcCCcch------------------hhhccCCCC------Cccc-----
Confidence            3589999999999999999864 477777776533111                  112222221      1111     


Q ss_pred             chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                        -..++..|+.|||.+-.+..|++-.|..  .+....+|.++
T Consensus       429 --d~~~la~Lv~mGF~e~~A~~ALe~~gnn--~~~a~~~L~~s  467 (568)
T KOG2561|consen  429 --DGISLAELVSMGFEEGKARSALEAGGNN--EDTAQRLLSAS  467 (568)
T ss_pred             --chhhHHHHHHhccccchHHHHHHhcCCc--HHHHHHHHHHh
Confidence              1246889999999999999999987764  46777777655

>TIGR00478 tly hemolysin TlyA family protein

Probab=87.17  E-value=1.2  Score=46.20  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=47.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHH-HHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~-t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.++||+-||.||++..+.+.|.  +.+++||+++.-.. .++.     +..-..+...||+.++.+++.   ..+..+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~  144 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF  144 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence            567899999999999999999985  46899999984221 2221     111112345577766655442   123456


Q ss_pred             cEEEec
Q 006172          603 DFVICQ  608 (658)
Q Consensus       603 DLVIGG  608 (658)
                      |+++-+
T Consensus       145 DvsfiS  150 (228)
T TIGR00478       145 DVSFIS  150 (228)
T ss_pred             eEEEee
Confidence            766543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=87.08  E-value=1.1  Score=48.24  Aligned_cols=51  Identities=24%  Similarity=0.274  Sum_probs=41.5

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      |..+...+-+|||+=||.|=++++..++|-.  -|+++|||+.|.++-+.|-.
T Consensus       155 l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~  205 (295)
T PF06325_consen  155 LEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAE  205 (295)
T ss_dssp             HHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHH
T ss_pred             HHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHH
Confidence            4444445679999999999999999999985  58999999999988887654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=87.03  E-value=1.3  Score=38.70  Aligned_cols=70  Identities=24%  Similarity=0.370  Sum_probs=47.6

Q ss_pred             ccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          528 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       528 vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      ||||=||.|-....|.+.   |.+ .-+.++|+++.+....+++....+ ....++..|++++..        ..+.+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~-~~~~~~~~D~~~l~~--------~~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDG-PKVRFVQADARDLPF--------SDGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTT-TTSEEEESCTTCHHH--------HSSSEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcC-CceEEEECCHhHCcc--------cCCCeeE
Confidence            689999999999999876   432 357899999999888777654322 234467888877532        2358999


Q ss_pred             EEe
Q 006172          605 VIC  607 (658)
Q Consensus       605 VIG  607 (658)
                      |+.
T Consensus        71 v~~   73 (101)
T PF13649_consen   71 VVC   73 (101)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>TIGR00477 tehB tellurite resistance protein TehB

Probab=86.99  E-value=1.8  Score=42.89  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=49.5

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.+|||+=||.|-.++-|.+.|.+   |.++|+++.+.+..+......+- .......|+....   +      .+.+|+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~---~------~~~fD~   97 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAA---L------NEDYDF   97 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcc---c------cCCCCE
Confidence            368999999999999999888974   68899999988877654432221 1112233433221   1      146899


Q ss_pred             EEecCCCC
Q 006172          605 VICQNSVP  612 (658)
Q Consensus       605 VIGGpPCQ  612 (658)
                      |+...+.-
T Consensus        98 I~~~~~~~  105 (195)
T TIGR00477        98 IFSTVVFM  105 (195)
T ss_pred             EEEecccc
Confidence            98766544

Part of a tellurite-reducing operon tehA and tehB

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=86.87  E-value=1.4  Score=44.50  Aligned_cols=73  Identities=14%  Similarity=0.059  Sum_probs=46.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g~~  602 (658)
                      .+-+||||=||.|+++..+.+..-.-..|++||+++..           +.++..++.+||.+... ..|.... ..+.+
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~~  118 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSKV  118 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCCC
Confidence            45689999999999987665542122358999999831           12344567889886542 2222111 23679


Q ss_pred             cEEEec
Q 006172          603 DFVICQ  608 (658)
Q Consensus       603 DLVIGG  608 (658)
                      |+|+..
T Consensus       119 D~V~S~  124 (209)
T PRK11188        119 QVVMSD  124 (209)
T ss_pred             CEEecC
Confidence            999974

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=86.85  E-value=1.5  Score=49.96  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=58.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.||=+..+..+ +-+ -.++|+|+++.-.++++.+....+.....+...|.+++..     .  ..+.|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f  184 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF  184 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence            4578999999999999887653 111 1488999999988888877655432222233445443321     1  12469


Q ss_pred             cEEEecCCCCCcccC
Q 006172          603 DFVICQNSVPQIPNS  617 (658)
Q Consensus       603 DLVIGGpPCQ~FS~a  617 (658)
                      |.|+-=.||.+...-
T Consensus       185 D~ILvDaPCSG~G~~  199 (470)
T PRK11933        185 DAILLDAPCSGEGTV  199 (470)
T ss_pred             CeEEEcCCCCCCccc
Confidence            999999999987653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=86.82  E-value=2.3  Score=42.43  Aligned_cols=82  Identities=20%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+.||.|..+.-+.++ +-. ..++++|+++......+.+....+... ..++.+|..+.-.        ..+.
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~-g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~  142 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERR-GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP  142 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence            4578999999999998776653 211 247899999987766665543322111 1234566653221        1257


Q ss_pred             ccEEEecCCCCCc
Q 006172          602 IDFVICQNSVPQI  614 (658)
Q Consensus       602 ~DLVIGGpPCQ~F  614 (658)
                      ||+|+-+..+..+
T Consensus       143 fD~Ii~~~~~~~~  155 (205)
T PRK13944        143 FDAIIVTAAASTI  155 (205)
T ss_pred             ccEEEEccCcchh
Confidence            9988877665443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=86.71  E-value=1.4  Score=44.74  Aligned_cols=86  Identities=15%  Similarity=0.083  Sum_probs=55.1

Q ss_pred             cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006172          507 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  586 (658)
Q Consensus       507 qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~  586 (658)
                      |......+++.|+.  ...-+|||+=||.|.+...|...|.   .++++|+++...+..+...     ....++.+|+.+
T Consensus        27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~   96 (251)
T PRK10258         27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKD-----AADHYLAGDIES   96 (251)
T ss_pred             HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc
Confidence            33333344454543  2346799999999999988888775   4789999998876655421     112245677765


Q ss_pred             cChhhHHHhhhccCCccEEEecCC
Q 006172          587 LTTKKFESLIHKLGSIDFVICQNS  610 (658)
Q Consensus       587 Lt~~~Ie~l~~~~g~~DLVIGGpP  610 (658)
                      +.-        ..+.||+|+...+
T Consensus        97 ~~~--------~~~~fD~V~s~~~  112 (251)
T PRK10258         97 LPL--------ATATFDLAWSNLA  112 (251)
T ss_pred             CcC--------CCCcEEEEEECch
Confidence            531        1246899886543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=86.66  E-value=0.97  Score=44.45  Aligned_cols=77  Identities=14%  Similarity=0.074  Sum_probs=53.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.+||||-||.|.+...+.+.+... .++++|+++...+..+....    ....++.+|+.++..        ..+.+|+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~  101 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL  101 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence            4789999999999999999988543 47899999988766654322    112244566655431        1246999


Q ss_pred             EEecCCCCCc
Q 006172          605 VICQNSVPQI  614 (658)
Q Consensus       605 VIGGpPCQ~F  614 (658)
                      |+....++-+
T Consensus       102 vi~~~~l~~~  111 (240)
T TIGR02072       102 IVSNLALQWC  111 (240)
T ss_pred             EEEhhhhhhc
Confidence            9977666543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=86.57  E-value=1.7  Score=45.76  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=35.9

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172          527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  571 (658)
Q Consensus       527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  571 (658)
                      +|||+=||.|...+-|.+.|++   |.++|+++.+....+.....
T Consensus       123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence            8999999999999999888974   68999999998877765443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=86.42  E-value=2  Score=43.30  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ..+.+|||+-||.|.++.-+.++ |- -..++++|+++......+.++...+.....+..+|..+...        ..+.
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~  145 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAP  145 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCC
Confidence            35679999999999999777654 32 12478999999988877776654322222344556543211        1256


Q ss_pred             ccEEEec
Q 006172          602 IDFVICQ  608 (658)
Q Consensus       602 ~DLVIGG  608 (658)
                      ||+|+-+
T Consensus       146 fD~I~~~  152 (212)
T PRK13942        146 YDRIYVT  152 (212)
T ss_pred             cCEEEEC
Confidence            8887643

>PRK05785 hypothetical protein; Provisional

Probab=86.28  E-value=1.5  Score=44.76  Aligned_cols=71  Identities=15%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+||||=||.|-+...|.+. |.   -++++|+++...+.-+.    .   . ..+.+|..++.-        .-+.|
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~----~---~-~~~~~d~~~lp~--------~d~sf  111 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLV----A---D-DKVVGSFEALPF--------RDKSF  111 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHh----c---c-ceEEechhhCCC--------CCCCE
Confidence            3578999999999998888887 43   47899999998765432    1   1 124566655432        12579


Q ss_pred             cEEEecCCCCC
Q 006172          603 DFVICQNSVPQ  613 (658)
Q Consensus       603 DLVIGGpPCQ~  613 (658)
                      |+|+.+.-.+.
T Consensus       112 D~v~~~~~l~~  122 (226)
T PRK05785        112 DVVMSSFALHA  122 (226)
T ss_pred             EEEEecChhhc
Confidence            99998765443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=85.69  E-value=1.8  Score=44.20  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  565 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~  565 (658)
                      +.+-+||++.||.|--.+-|-..|++   |++||+++.|.+.+
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~   75 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF   75 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence            45579999999999999999999986   78999999998764

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=85.42  E-value=2.6  Score=43.81  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=48.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhh---hcCCCCCccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~---~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|||+-||.|.+...+.+. |-. ..++++|+++...+..+....   ........++.+|+.++.-        .-
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--------~~  143 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--------DD  143 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--------CC
Confidence            4578999999999998877653 432 247899999998776653211   0011122245667765542        12


Q ss_pred             CCccEEEecC
Q 006172          600 GSIDFVICQN  609 (658)
Q Consensus       600 g~~DLVIGGp  609 (658)
                      +.||+|+.+.
T Consensus       144 ~sfD~V~~~~  153 (261)
T PLN02233        144 CYFDAITMGY  153 (261)
T ss_pred             CCEeEEEEec
Confidence            4699998654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=85.21  E-value=1.4  Score=45.32  Aligned_cols=92  Identities=14%  Similarity=0.145  Sum_probs=56.0

Q ss_pred             hhhcccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccCh
Q 006172          512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT  589 (658)
Q Consensus       512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~  589 (658)
                      +.+|..|-...+ .-+||++.+|+|...+.+.++ +-. -.++++|+++.+.+..+.+|...+... ..++.+|..++  
T Consensus        57 g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~--  132 (234)
T PLN02781         57 GLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA--  132 (234)
T ss_pred             HHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence            444444544433 457999999999866555443 211 147899999999999999987654321 22345665432  


Q ss_pred             hhHHHhhhc--cCCccEEEecC
Q 006172          590 KKFESLIHK--LGSIDFVICQN  609 (658)
Q Consensus       590 ~~Ie~l~~~--~g~~DLVIGGp  609 (658)
                        +..+...  .+.||+|.-..
T Consensus       133 --L~~l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        133 --LDQLLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             --HHHHHhCCCCCCCCEEEECC
Confidence              2222222  25789887553

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=85.00  E-value=3.7  Score=42.94  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .|.+|||+-||.|=+.+.+.+..=.. -++++|+++.-.++-+.-..+.+..+..++.+|..+|.-.        -..||
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~--------D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP--------DNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC--------CCccC
Confidence            57999999999999998887654232 4678999998766655432222111222456666655421        14689


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+-++==+++.
T Consensus       122 ~vt~~fglrnv~  133 (238)
T COG2226         122 AVTISFGLRNVT  133 (238)
T ss_pred             EEEeeehhhcCC
Confidence            998776444443

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=84.89  E-value=1.1  Score=43.53  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  565 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~  565 (658)
                      +.+-.|||.|+|.|.-.++..++|-+   .+++|+++...++.
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a  229 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA  229 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence            34567999999999999999999954   68899999876553

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=84.50  E-value=1  Score=49.85  Aligned_cols=62  Identities=23%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             hcccchhhhcccccccCCCCCcccccCCCCC--hHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          506 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       506 fqvdti~~~lsvLK~~f~~~l~vLdLFSGiG--GlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      .++-.+. .+++++.-+..++++||-+||+|  |+.++.+-.|.  ..|+++|+|+.|.+.++.|-.
T Consensus        32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~   95 (377)
T PF02005_consen   32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE   95 (377)
T ss_dssp             HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred             eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence            4444444 45666665556799999999999  99999997776  468899999999999998754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.37  E-value=1.2  Score=50.17  Aligned_cols=141  Identities=19%  Similarity=0.226  Sum_probs=81.9

Q ss_pred             hhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhh--c---cC-CCCCCCccCcccCCCCCCCCCCccCCCCCCCCC
Q 006172           17 SSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNAL--Q---ES-NSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP   90 (658)
Q Consensus        17 ~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al--~---~s-~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~   90 (658)
                      +.+++|||-+.-...|+.-.-. ++|.-+.+|..-.+=  +   +. ..++.- +        +.  -.++.... +.=.
T Consensus       308 sllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~erre~laq~R~k~~a~Ere~-~--------~r--~k~~n~~~-~~wv  374 (568)
T KOG2561|consen  308 SLLVGMGFEESDARLALRSCNG-DVDSAVQFIIERREKLAQKREKDLAREREI-L--------ER--KKYGNTPM-KKWV  374 (568)
T ss_pred             HHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-H--------HH--HHhcCCCc-cccc
Confidence            5689999999999999988744 888888887653321  0   00 000000 0        00  00000000 0011


Q ss_pred             CccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccch
Q 006172           91 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGT  170 (658)
Q Consensus        91 ~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~  170 (658)
                             ....+..|++|||..+.|..|+.+.-  +++..-||.+-...          |+..        ..-..+-..
T Consensus       375 -------n~rs~~rL~~mGyer~la~eaL~r~~--Ndi~~aldllq~es----------del~--------~n~~~~p~~  427 (568)
T KOG2561|consen  375 -------NPRSLERLVSMGYERELAAEALRRNE--NDIQKALDLLQDES----------DELE--------SNKPKRPEQ  427 (568)
T ss_pred             -------CHHHHHHHHhcchHhHHHHHHHHhcc--CcHHHHHHhcCCcc----------hhhh--------ccCCCCCcc
Confidence                   33457899999999999999999944  44544444332111          1000        000111122


Q ss_pred             h--hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006172          171 M--EITLQLLEMGFSENQVSLAIEKFGSK  197 (658)
Q Consensus       171 m--~k~~~L~~MGf~e~Eas~AI~rcG~d  197 (658)
                      .  .++..||.|||.+--|..|++-.|..
T Consensus       428 vd~~~la~Lv~mGF~e~~A~~ALe~~gnn  456 (568)
T KOG2561|consen  428 VDGISLAELVSMGFEEGKARSALEAGGNN  456 (568)
T ss_pred             cchhhHHHHHHhccccchHHHHHHhcCCc
Confidence            3  34459999999999999999999876

>PRK10742 putative methyltransferase; Provisional

Probab=84.36  E-value=3.5  Score=43.51  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=54.7

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+|||+|+|.|..+.=+-..|..   |..||-++.....++.......+...+-  +...|+=+..+.+.-+......||
T Consensus        90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD  166 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_pred             CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence            48999999999998888888974   7889999999998887655422111110  012243334443332222224699


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|.-=||=.
T Consensus       167 VVYlDPMfp  175 (250)
T PRK10742        167 VVYLDPMFP  175 (250)
T ss_pred             EEEECCCCC
Confidence            999888743

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=84.29  E-value=3  Score=40.76  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=49.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...+.+.+.....++++|+++......+..+. . .....+..+|+.++..        ..+.+|
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D  108 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD  108 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence            45789999999999999888877432257899999988777665442 1 1122345567665431        124688


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus       109 ~i~~  112 (223)
T TIGR01934       109 AVTI  112 (223)
T ss_pred             EEEE
Confidence            8764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=83.93  E-value=2.5  Score=41.89  Aligned_cols=43  Identities=37%  Similarity=0.359  Sum_probs=34.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      .+.+|||+-||.|.+...+.+.|.+   ++++|+++......+...
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   87 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA   87 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence            4678999999999999988888864   778999998766665543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=83.93  E-value=2.5  Score=44.77  Aligned_cols=88  Identities=19%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.|+.||=+..+-.+-..--.++|+|+++.-...++.+....+.....+...|-+++.....      ...||
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd  158 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFD  158 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccc
Confidence            346699999999999877766544223588999999999998887665543332222344443332211      12599


Q ss_pred             EEEecCCCCCcccC
Q 006172          604 FVICQNSVPQIPNS  617 (658)
Q Consensus       604 LVIGGpPCQ~FS~a  617 (658)
                      .|+-=.||.+....
T Consensus       159 ~VlvDaPCSg~G~i  172 (283)
T PF01189_consen  159 RVLVDAPCSGLGTI  172 (283)
T ss_dssp             EEEEECSCCCGGGT
T ss_pred             hhhcCCCccchhhh
Confidence            99999999997654

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=83.75  E-value=2.1  Score=43.88  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=51.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+=||.|.+...|.+..-. ..++++|+++...+..+.       .+..++.+|+.++..         .+.||
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~---------~~~fD   91 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP---------KPDTD   91 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC---------CCCce
Confidence            4578999999999999888876311 236899999987665432       123355677665431         25799


Q ss_pred             EEEecCCCCCc
Q 006172          604 FVICQNSVPQI  614 (658)
Q Consensus       604 LVIGGpPCQ~F  614 (658)
                      +|+.....+-+
T Consensus        92 ~v~~~~~l~~~  102 (255)
T PRK14103         92 VVVSNAALQWV  102 (255)
T ss_pred             EEEEehhhhhC
Confidence            99998766544

>PRK00811 spermidine synthase; Provisional

Probab=83.51  E-value=2.2  Score=45.06  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI  596 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~~Lt~~~Ie~l~  596 (658)
                      +++-+||+|-+|.|++..-+.+. +.  +-+..||+|+...+..+.++...+     .+...++.+|..+.-.       
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~-------  145 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA-------  145 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence            45678999999999998766554 54  468899999999999988875321     1222344566543211       


Q ss_pred             hccCCccEEEecC
Q 006172          597 HKLGSIDFVICQN  609 (658)
Q Consensus       597 ~~~g~~DLVIGGp  609 (658)
                      ...+.+|+|+.-.
T Consensus       146 ~~~~~yDvIi~D~  158 (283)
T PRK00811        146 ETENSFDVIIVDS  158 (283)
T ss_pred             hCCCcccEEEECC
Confidence            1235799999754

>PLN02672 methionine S-methyltransferase

Probab=83.14  E-value=1.9  Score=53.66  Aligned_cols=46  Identities=9%  Similarity=0.005  Sum_probs=37.4

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  571 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  571 (658)
                      +.+||||=||.|-+.+.+...+=. ..++++||++.+....+.|...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~  164 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYL  164 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            358999999999999998876522 3578999999999888877653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=82.91  E-value=2.3  Score=50.60  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             eEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 006172          551 GVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  610 (658)
Q Consensus       551 ~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  610 (658)
                      .++++|+|+.+....+.+....+... ..+..+|+.++....      ..+.+|+|+.=||
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP  312 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP  312 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence            37899999999999998877654332 124467777664211      1146899998887

>PLN03196 MOC1-like protein; Provisional

Probab=82.56  E-value=9.2  Score=43.83  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=20.5

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhC
Q 006172          172 EITLQLLEMGFSENQVSLAIEKFG  195 (658)
Q Consensus       172 ~k~~~L~~MGf~e~Eas~AI~rcG  195 (658)
                      .|+.+|.+|||+++|+..+|.+|=
T Consensus       342 ~kvefL~~~Gls~edI~~mv~k~P  365 (487)
T PLN03196        342 KHVEFLRGRGFSAQDVAKMVVRCP  365 (487)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhCC
Confidence            566689999999999999988873

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=82.33  E-value=3  Score=42.53  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=49.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+=||.|.+...|.+.. +-..++++|+++...+..+....     ...++.+|+.++..         ...+|
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD   95 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD   95 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence            45789999999999988887653 12357899999998777665321     22245567654422         13688


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+.....+
T Consensus        96 ~v~~~~~l~  104 (258)
T PRK01683         96 LIFANASLQ  104 (258)
T ss_pred             EEEEccChh
Confidence            888766544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=81.84  E-value=3.9  Score=44.37  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=45.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+..-+.+..-.-..++++|+++......+......+.....++.+|..+...        ..+.+|
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD  151 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD  151 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence            457899999999999887766431111378999999876655544333222222334555543221        124577


Q ss_pred             EEEec
Q 006172          604 FVICQ  608 (658)
Q Consensus       604 LVIGG  608 (658)
                      +|+-+
T Consensus       152 ~Ii~~  156 (322)
T PRK13943        152 VIFVT  156 (322)
T ss_pred             EEEEC
Confidence            76653

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=81.74  E-value=0.82  Score=46.33  Aligned_cols=50  Identities=22%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             ccccccCC--CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172          516 SVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  568 (658)
Q Consensus       516 svLK~~f~--~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~  568 (658)
                      ..+.+++|  ..-+++|+|+|.|...+.+...+   ..++.+|+++.....++..
T Consensus        10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~   61 (260)
T PF02086_consen   10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAV   61 (260)
T ss_dssp             HHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHH
Confidence            33445566  47789999999999988887655   3578899999988877743

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=80.87  E-value=4.7  Score=43.91  Aligned_cols=81  Identities=15%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             CCCcccccCCCCChHHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCc-c-ccccccccChhhHHHhhhc
Q 006172          524 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL-V-QIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~--~aGi~~k~vvavEid~~a~~t~k~~~~~~-n~~g~l-~-~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      .+.++||+=||+|++..-+-  .-|.   .++++|||+.+...-+.+-... +..+.+ + +..|...+-    ..+...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~---~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~  186 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGW---RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK  186 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence            45889999999998865443  3354   3688999999988887765443 121111 1 111222111    111112


Q ss_pred             cCCccEEEecCCC
Q 006172          599 LGSIDFVICQNSV  611 (658)
Q Consensus       599 ~g~~DLVIGGpPC  611 (658)
                      .+.||+|+.=||=
T Consensus       187 ~~~fDlivcNPPf  199 (321)
T PRK11727        187 NERFDATLCNPPF  199 (321)
T ss_pred             CCceEEEEeCCCC
Confidence            3579999999983

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=80.80  E-value=2.2  Score=33.50  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             hHHHHHhcCCCHHHHHHHHHhh--CCCCChhhhh
Q 006172          173 ITLQLLEMGFSENQVSLAIEKF--GSKTPISELA  204 (658)
Q Consensus       173 k~~~L~~MGf~e~Eas~AI~rc--G~da~i~eL~  204 (658)
                      -+..|+..||++.||..|+.+.  +++.++++++
T Consensus         6 ~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~i   39 (47)
T PF07499_consen    6 ALEALISLGYSKAEAQKAVSKLLEKPGMDVEELI   39 (47)
T ss_dssp             HHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHH
Confidence            3458999999999999999999  7888887765

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=80.70  E-value=4.8  Score=44.89  Aligned_cols=109  Identities=20%  Similarity=0.202  Sum_probs=68.5

Q ss_pred             ccccCCCCCcccccCCCCChHHH--HHHHc------------------------------------CCceeeEEEeeCCH
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEV--TLHRL------------------------------------GIKLKGVISIETSE  559 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlsl--GL~~a------------------------------------Gi~~k~vvavEid~  559 (658)
                      |-.+.+. -.++|-|||.|.+-+  ||..+                                    |-++..++++|||+
T Consensus       186 lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~  264 (381)
T COG0116         186 LAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP  264 (381)
T ss_pred             HcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence            4444444 578999999998743  33222                                    12223477999999


Q ss_pred             HHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCC
Q 006172          560 TNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDF  638 (658)
Q Consensus       560 ~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~  638 (658)
                      ...+.-+.|+........+ +...|++.|...        +..+|+||+-||=-                  .|-|-+..
T Consensus       265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPYG------------------eRlg~~~~  318 (381)
T COG0116         265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPYG------------------ERLGSEAL  318 (381)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCcc------------------hhcCChhh
Confidence            9999988888765433222 345677766643        24789999888721                  12221212


Q ss_pred             CcchHHHHHHHHHHh
Q 006172          639 DFSLYYEFVRVVQRV  653 (658)
Q Consensus       639 Rs~Lf~Ey~RIV~~v  653 (658)
                      -..||.+|.+.+++.
T Consensus       319 v~~LY~~fg~~lk~~  333 (381)
T COG0116         319 VAKLYREFGRTLKRL  333 (381)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345899999888554

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=80.35  E-value=5.3  Score=38.33  Aligned_cols=79  Identities=14%  Similarity=0.113  Sum_probs=53.1

Q ss_pred             chhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172           12 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN   91 (658)
Q Consensus        12 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~   91 (658)
                      .-++...|..-||+.+.|..||++..+++. .++..|+.=.-    ..                    ...    .+   
T Consensus        78 ~~~I~~~L~~kGi~~~~I~~~l~~~~~d~~-e~a~~~~~k~~----~~--------------------~~~----~~---  125 (157)
T PRK00117         78 PRRIRQELRQKGVDREIIEEALAELDIDWE-ELARELARKKF----RR--------------------PLP----DD---  125 (157)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCccHH-HHHHHHHHHHc----CC--------------------CCC----CC---
Confidence            446889999999999999999999874333 33333332110    00                    000    00   


Q ss_pred             ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172           92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD  125 (658)
Q Consensus        92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d  125 (658)
                         .....+.+.+|+.=||+-+.|..||++..++
T Consensus       126 ---~~~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~  156 (157)
T PRK00117        126 ---AKEKAKLVRFLARRGFSMDVIQRVLRNALDD  156 (157)
T ss_pred             ---HHHHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence               0125677899999999999999999986553

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=80.23  E-value=4.5  Score=39.93  Aligned_cols=75  Identities=21%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +.+|||+-||.|.+...+...+-....++++|+++......+.++...+.. ...+...|+.++..        ..+.+|
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D  123 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD  123 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence            478999999999999988887721235789999998877777655332111 12234556654431        124688


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus       124 ~I~~  127 (239)
T PRK00216        124 AVTI  127 (239)
T ss_pred             EEEE
Confidence            8874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	658
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	6e-10
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	6e-05
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	1e-05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.1 bits (207), Expect = 6e-17
 Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 262/695 (37%)

Query: 108 MNFSVNEVDFA--------LDKLGKDAPVYELVDFITAAQISENFEKETDD---APHDND 156
           M+F   E  +          D    +    ++ D   +  +S   ++E D    +     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LS---KEEIDHIIMSKDAVS 62

Query: 157 GTN------EDKSDETLYGTMEITLQ-----LLE-MGFSENQVSLAIEKFGSKTPISELA 204
           GT         K +E +   +E  L+     L+  +   + Q S+    +       E  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQR 116

Query: 205 DKIF-SGQIF--LDTPRSRSYDTVKV--------------------KT------------ 229
           D+++   Q+F   +  R + Y  ++                     KT            
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 230 --------------EYCSPDVV--------SQSRKMNTSETSRGKRPKEEYFDDFSNSTS 267
                            SP+ V         Q     TS +      K            
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELR 235

Query: 268 QFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSI--- 324
           +             +P +  L      L +    K            AFN + C+ +   
Sbjct: 236 RLLK---------SKPYENCLLV----LLNVQNAKA---------WNAFNLS-CKILLTT 272

Query: 325 -NKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 383
             K V         + +  +    + + H   +L P+    +  S L +   YL   P  
Sbjct: 273 RFKQVT--------DFLSAATTTHISLDHHSMTLTPD----EVKSLLLK---YLDCRPQD 317

Query: 384 NRFHIPPEP----PMTIQDAIPHTKKWWPS-WDTRKHLSCINSGTSGISQLCERFEKLLR 438
               +P E     P  +   I  + +   + WD  KH++            C++   ++ 
Sbjct: 318 ----LPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVN------------CDKLTTIIE 360

Query: 439 DSRGVLSSQQQRD------ILHRSEK-----LNLVWVGAYKLGPVDPEHIE-------LI 480
            S  VL   + R       +   S       L+L+W   + +   D   +        L+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLV 417

Query: 481 LGYPSNHT-----------------QAAGNSLTARLESLRHCFQTDT------------- 510
              P   T                  A   S+       +  F +D              
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSH 476

Query: 511 LGYHLSVLK-----SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 565
           +G+HL  ++     ++F        VF       +    L  K+            R   
Sbjct: 477 IGHHLKNIEHPERMTLFR------MVF-------LDFRFLEQKI------------RHDS 511

Query: 566 KRWWESSGQTGELVQIEDIQALTTK---KFESLIHKLGSIDFVICQNSVPQIPNSK---- 618
             W  S      L Q++  +        K+E L++ +  +DF+        +  SK    
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFL--PKIEENLICSKYTDL 567

Query: 619 -QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 652
            +I+      + AE +       +++ E  + VQR
Sbjct: 568 LRIA------LMAEDE-------AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 50/339 (14%), Positives = 105/339 (30%), Gaps = 98/339 (28%)

Query: 3   VGENIASSSGSNLRSSFIGMGFSP----SLVDKVIEEKGQD------NVDLLLETLI--- 49
           V + +++++ +++      M  +P    SL+ K ++ + QD        +    ++I   
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 50  --------------EYNALQESNSQSSDSLDT-----LFGD-----KDANSPPEISTMV- 84
                           + L      S + L+      +F         A+ P  + +++ 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 85  --QPKEEPNVMDEGLHIEKRASLL-----MMNFSVNEVDFALDKLGKDAPVYEL-VDFIT 136
               K +  V+   LH   + SL+         S+      L+   K    Y L    + 
Sbjct: 397 FDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRSIVD 451

Query: 137 AAQISENFEKETDDAPHDNDG----------TNEDKSDETLYGTMEITLQLLEMGFSENQ 186
              I + F+ + D  P   D            N +  +          +  L+  F E +
Sbjct: 452 HYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMT----LFRMVFLDFRFLEQK 506

Query: 187 V---SLAIEKFGSKTPISELAD-KIFSGQIFLDTPR-----------SRSYDTVKVKTEY 231
           +   S A    GS      L   K +   I  + P+               +   + ++Y
Sbjct: 507 IRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 232 CSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQ 270
              D++ +   M            E  F++   +  Q Q
Sbjct: 565 T--DLL-RIALMA---------EDEAIFEE---AHKQVQ 588

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query: 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 585
           + +LS+F GI    + L  LGI++   I+ E  E +  +           G+++ + D++
Sbjct: 17  IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-----HQGKIMYVGDVR 71

Query: 586 ALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFS 641
           ++T K  +    + G  D VI    C +          +S     +       L +    
Sbjct: 72  SVTQKHIQ----EWGPFDLVIGGSPCND----------LSIVNPARK-----GLYEGTGR 112

Query: 642 LYYEFVRVVQRVR 654
           L++EF R++   R
Sbjct: 113 LFFEFYRLLHDAR 125

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 32/193 (16%)

Query: 330 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIP 389
           +P ++ + NVV + +     +S FL S  P  ++++  SA  R   +  NLP  NR    
Sbjct: 132 RPFFWLFENVVAMGVSDKRDISRFLES-NPVMIDAKEVSAAHRARYFWGNLPGMNRPL-- 188

Query: 390 PEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQ 449
                T+ D +   +        +                  +   +   S  +   + Q
Sbjct: 189 ---ASTVNDKLELQECLEHGRIAKF----------------SKVRTITTRSNSIKQGKDQ 229

Query: 450 RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTD 509
              +  +EK +++W             +E + G+P ++T  +  S  AR   L   +   
Sbjct: 230 HFPVFMNEKEDILW----------CTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVP 279

Query: 510 TLGYHLSVLKSMF 522
            + +  + LK  F
Sbjct: 280 VIRHLFAPLKEYF 292

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 330 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH-- 387
            P ++ + + + ++ +     S FL   EP  +   +  +L        N+P     H  
Sbjct: 278 GPFFWMFVDNLVLNKEDLDVASRFLEM-EPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWA 336

Query: 388 IPPEPPMTIQDAIPHTKKWWPSWD 411
           +  E  +++      + K    W 
Sbjct: 337 LVSEEELSLLAQNKQSSKLAAKWP 360

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVI-----SIETSETNRRILKRWWESSGQTGELVQ 580
           L ++ +FSG+GG  +   R G  +K  +     +I T   N                L  
Sbjct: 3   LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------------RSLHV 50

Query: 581 IEDIQALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQ-ISNSKDPKMAAESDNL 635
            ED+  L  +  +        ID +I    CQ        S     N  D +      N 
Sbjct: 51  QEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ------GFSSIGKGNPDDSR------N- 97

Query: 636 PDFDFSLYYEFVRVVQRVR 654
                 LY  F R+V  ++
Sbjct: 98  -----QLYMHFYRLVSELQ 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	658
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	99.92
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.91
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.88
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.88
3me5_A	482	Cytosine-specific methyltransferase; structural ge	99.88
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	99.87
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	99.87
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	99.86
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	99.86
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	99.84
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	99.77
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	99.76
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	99.76
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	99.71
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.5
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.4
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.36
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	99.29
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	98.82
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	98.81
3me5_A	482	Cytosine-specific methyltransferase; structural ge	98.73
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.72
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	98.67
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.56
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	98.55
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	98.53
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	98.21
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	98.05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.02
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.74
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	97.74
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.65
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.47
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.44
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.43
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.41
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	97.37
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.18
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.17
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.14
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.11
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.1
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	97.08
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.06
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.04
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	97.04
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.04
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.0
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	97.0
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.99
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.96
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.87
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	96.87
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.86
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.77
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.73
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.73
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.73
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.67
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	96.66
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.65
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.63
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.62
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.59
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.57
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.55
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	96.54
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.52
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.5
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.49
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.49
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.43
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.43
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.42
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.42
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	96.41
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.4
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.39
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	96.37
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.31
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.28
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	96.26
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	96.26
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.26
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.25
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.19
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	96.17
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.14
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.13
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	96.12
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.09
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.03
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.01
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	96.01
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.0
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.98
3ll7_A	410	Putative methyltransferase; methytransferase, stru	95.98
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.97
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	95.93
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.92
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	95.91
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	95.91
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.85
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.8
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.74
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.73
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	95.72
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	95.71
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.7
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.7
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.68
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.68
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.66
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	95.59
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	95.59
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	95.59
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.58
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.57
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.54
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.54
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	95.52
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.51
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.44
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	95.44
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.43
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	95.42
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	95.39
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	95.37
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	95.33
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.33
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	95.29
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.25
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.2
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.19
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.17
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.16
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.14
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	95.09
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	95.07
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.05
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.03
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	94.96
2qm3_A	373	Predicted methyltransferase; putative methyltransf	94.95
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	94.93
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	94.92
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	94.9
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	94.89
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.79
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	94.79
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	94.78
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	94.77
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	94.7
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	94.7
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.68
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	94.61
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	94.61
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	94.55
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	94.55
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.54
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	94.51
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	94.48
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	94.48
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	94.45
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	94.44
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.38
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	94.38
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	94.37
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.32
3f4k_A	257	Putative methyltransferase; structural genomics, P	94.25
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.16
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	94.15
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	94.15
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	94.1
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	94.1
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	94.1
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.05
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	94.05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	94.0
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	93.97
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	93.96
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.93
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	93.89
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	93.89
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	93.86
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	93.83
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	93.82
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.8
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	93.77
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	93.73
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	93.72
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	93.71
3lcc_A	235	Putative methyl chloride transferase; halide methy	93.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	93.61
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	93.6
1xxl_A	239	YCGJ protein; structural genomics, protein structu	93.56
2p7i_A	250	Hypothetical protein; putative methyltransferase,	93.56
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	93.56
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	93.55
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	93.51
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	93.47
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	93.41
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	93.39
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	93.31
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	93.31
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	93.27
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	93.24
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	93.24
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	93.19
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	93.17
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	93.13
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	93.12
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	93.08
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	93.03
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	93.0
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	92.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	92.94
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	92.92
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	92.88
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	92.83
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	92.82
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	92.81
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	92.79
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	92.78
3ocj_A	305	Putative exported protein; structural genomics, PS	92.77
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	92.76
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	92.71
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	92.7
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	92.65
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	92.65
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	92.64
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	92.61
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	92.6
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	92.55
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	92.52
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	92.51
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	92.49
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	92.47
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	92.42
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.3
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	92.28
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	92.27
3lkd_A	542	Type I restriction-modification system methyltrans	92.19
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	92.03
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	92.0
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	91.98
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	91.98
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	91.92
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	91.89
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	91.86
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	91.84
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	91.82
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	91.79
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	91.72
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	91.62
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	91.62
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	91.58
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	91.58
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	91.5
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	91.48
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	91.43
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	91.4
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	91.39
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	91.28
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.27
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	91.19
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	91.16
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	91.15
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	91.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	91.0
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	90.97
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	90.94
3khk_A	544	Type I restriction-modification system methylation	90.94
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	90.86
3cc8_A	230	Putative methyltransferase; structural genomics, j	90.85
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	90.84
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	90.8
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	90.8
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	90.78
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	90.66
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	90.64
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	90.64
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	90.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	90.56
2dna_A	67	Unnamed protein product; ubiquitin associated doma	90.41
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	90.38
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	90.23
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	90.21
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	89.99
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	89.85
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	89.5
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	89.44
2o07_A	304	Spermidine synthase; structural genomics, structur	89.28
2b25_A	336	Hypothetical protein; structural genomics, methyl	89.14
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	89.01
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	88.93
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	88.91
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	88.66
2i7c_A	283	Spermidine synthase; transferase, structural genom	88.49
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	88.44
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	88.44
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	88.35
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	88.01
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	87.93
1ixs_A	62	Holliday junction DNA helicase RUVA; heterodimeric	87.84
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	87.78
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	87.72
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	87.71
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	87.66
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	87.6
2oo3_A	283	Protein involved in catabolism of external DNA; st	87.55
2pt6_A	321	Spermidine synthase; transferase, structural genom	87.39
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	87.34
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	87.29
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	87.27
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	87.15
3i9f_A	170	Putative type 11 methyltransferase; structural gen	86.84
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	86.81
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	86.46
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	86.4
2dna_A	67	Unnamed protein product; ubiquitin associated doma	86.3
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	86.27
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	86.04
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	85.91
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	85.86
3ege_A	261	Putative methyltransferase from antibiotic biosyn	85.78
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	85.42
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	85.26
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	85.22
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	85.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	84.84
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	84.55
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	84.52
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	84.31
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	84.2
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	83.86
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	83.63
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	83.2
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	83.01
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	82.25
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	82.15
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	82.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	81.78

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=99.92  E-value=5.5e-26  Score=234.17  Aligned_cols=105  Identities=17%  Similarity=0.342  Sum_probs=93.3

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  605 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  605 (658)
                      |+||||||||||+++||+++||  ++++++|+|+.|++||+.+|.      ..++.+||++|+.+++       +++|||
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l   65 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI   65 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence            6899999999999999999998  579999999999999998653      2367899999998765       579999


Q ss_pred             EecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          606 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       606 IGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      +||||||+||.+|+            ++|++|+|+.||++|+|+|+++||+.
T Consensus        66 ~ggpPCQ~fS~ag~------------~~g~~d~R~~L~~~~~r~i~~~~Pk~  105 (331)
T 3ubt_Y           66 IGGPPSQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF  105 (331)
T ss_dssp             ECCCCGGGTEETTE------------ECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred             EecCCCCCcCCCCC------------ccCCCCchhHHHHHHHHHHhccCCeE
Confidence            99999999998753            46789999999999999999999974

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=225.65  Aligned_cols=117  Identities=22%  Similarity=0.371  Sum_probs=101.9

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      ...+.+++||||||||||+++||+++||++++++++|+|+.|+++|+.+|.     ++.++.+||++++.+++..    .
T Consensus        11 ~~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~----~   81 (295)
T 2qrv_A           11 AEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQE----W   81 (295)
T ss_dssp             CCCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHH----T
T ss_pred             cccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcc----c
Confidence            345678999999999999999999999988779999999999999988653     3446789999999987754    3


Q ss_pred             CCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172          600 GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  656 (658)
Q Consensus       600 g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~  656 (658)
                      +++|||+||||||+||.+|+           ++.|++|+|+.||++|+|+|+++||+
T Consensus        82 ~~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           82 GPFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             CCCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred             CCcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence            68999999999999998863           23678999999999999999999987

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.88  E-value=2.1e-23  Score=219.47  Aligned_cols=111  Identities=14%  Similarity=0.225  Sum_probs=97.5

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      ++++|||||||||+++||+++|+.+++++++|+|+.|+++|+.+|..     ..++.+||++++.+++..     ..+||
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~~~-----~~~D~   72 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVIKK-----WNVDT   72 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHhcc-----CCCCE
Confidence            57899999999999999999999888999999999999999987643     335689999999988754     26999


Q ss_pred             EEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-ccc
Q 006172          605 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SMK  657 (658)
Q Consensus       605 VIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK-~~~  657 (658)
                      |+||||||+||.+|+            +.|++|+|+.||++|+|+|+++| |++
T Consensus        73 l~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~~P~~  114 (333)
T 4h0n_A           73 ILMSPPCQPFTRNGK------------YLDDNDPRTNSFLYLIGILDQLDNVDY  114 (333)
T ss_dssp             EEECCCCCCSEETTE------------ECCTTCTTSCCHHHHHHHGGGCTTCCE
T ss_pred             EEecCCCcchhhhhh------------ccCCcCcccccHHHHHHHHHHhcCCCE
Confidence            999999999998753            35688999999999999999997 863

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.88  E-value=2.1e-23  Score=219.13  Aligned_cols=118  Identities=18%  Similarity=0.317  Sum_probs=98.5

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeE-EEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006172          517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  595 (658)
Q Consensus       517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~v-vavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l  595 (658)
                      +|.++...++++|||||||||+++||+++||+++++ +++|+|+.|++||+.+|..+      ++.+||++++.++|.. 
T Consensus         2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~-   74 (327)
T 3qv2_A            2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIES-   74 (327)
T ss_dssp             ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHH-
T ss_pred             CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhcc-
Confidence            456666778999999999999999999999877889 99999999999999877432      5689999999988754 


Q ss_pred             hhccCCccEEEecCCCCCc--ccCCCCCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hccc
Q 006172          596 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSMK  657 (658)
Q Consensus       596 ~~~~g~~DLVIGGpPCQ~F--S~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~R-IV~~v--K~~~  657 (658)
                          .++|||+||||||+|  |.+|+            ++|++|+|+.||++|+| +|+++  ||++
T Consensus        75 ----~~~Dil~ggpPCQ~fs~S~ag~------------~~~~~d~r~~L~~~~~r~~i~~~~~~P~~  125 (327)
T 3qv2_A           75 ----LNCNTWFMSPPCQPYNNSIMSK------------HKDINDPRAKSVLHLYRDILPYLINKPKH  125 (327)
T ss_dssp             ----TCCCEEEECCCCTTCSHHHHTT------------TCTTTCGGGHHHHHHHHTTGGGCSSCCSE
T ss_pred             ----CCCCEEEecCCccCcccccCCC------------CCCCccccchhHHHHHHHHHHHhccCCCE
Confidence                279999999999999  87653            46788999999999999 99999  7763

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=99.88  E-value=2.9e-23  Score=228.35  Aligned_cols=125  Identities=17%  Similarity=0.261  Sum_probs=88.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh--------H-HHh
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL  595 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~--------I-e~l  595 (658)
                      ++++|||||||||+++||+++|+  ++++++|+|+.|++||+.+|...  ++..++.+||++++...        + ..+
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhh
Confidence            58999999999999999999997  57999999999999999987422  34456679999887432        1 111


Q ss_pred             hhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006172          596 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       596 ~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~-D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      ....+++|||+||||||+||.+|+.++.    ..+.+.|+. |+|+.||++|+|+|+.+||++
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~  222 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM  222 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred             hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence            2345789999999999999998863220    012335665 899999999999999999974

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=99.87  E-value=9.6e-23  Score=217.58  Aligned_cols=113  Identities=20%  Similarity=0.302  Sum_probs=92.7

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +++||||||||||+++||+++|+  +++++||+|+.|+++|+.+|.     ...++.+||++++.+++.......+.+||
T Consensus         2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            48999999999999999999997  579999999999999998653     33467899999998877543223478999


Q ss_pred             EEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          605 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       605 VIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      |+||||||+||.+|+             ++.+|+|+.||++|+|+|+++||++
T Consensus        75 i~ggpPCQ~fS~ag~-------------~~~~d~r~~L~~~~~~~v~~~~P~~  114 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGK-------------GNPDDSRNQLYMHFYRLVSELQPLF  114 (376)
T ss_dssp             EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred             EEecCCCCCcccccC-------------CCCCCchHHHHHHHHHHHHHhCCCE
Confidence            999999999998754             2578999999999999999999974

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=99.87  E-value=2.8e-22  Score=210.23  Aligned_cols=106  Identities=19%  Similarity=0.319  Sum_probs=92.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .++++||||||+||+++||+++|+  +++++||+|+.|+++|+.+|...      . .+||+++..+.+       +++|
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D   73 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence            568999999999999999999998  57999999999999999987532      1 689999987654       4699


Q ss_pred             EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      ||+||||||+||.+|+            +.|++|+|+.||++|+|+|+++||++
T Consensus        74 ~l~~gpPCQ~fS~ag~------------~~g~~d~r~~L~~~~~r~i~~~~P~~  115 (327)
T 2c7p_A           74 ILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             EEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             EEEECCCCCCcchhcc------------cCCCcchhhHHHHHHHHHHHhccCcE
Confidence            9999999999998764            35688999999999999999999964

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=99.86  E-value=1.3e-22  Score=232.84  Aligned_cols=122  Identities=17%  Similarity=0.170  Sum_probs=96.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----  594 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~----  594 (658)
                      .++++|||||||||||++||+++|.    .+++++|||+|+.|++||+.|+     +.+.+...||.++....++.    
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~~~~~~~di~~i~~~~~~~~~~~  284 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQTEVRNEKADEFLALLKEWAVLC  284 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TTSEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CCCceecCcHHHhhhhhhhccccc
Confidence            4569999999999999999999982    2478999999999999998854     44456678887664332211    


Q ss_pred             --------------------------------------------------------------------------------
Q 006172          595 --------------------------------------------------------------------------------  594 (658)
Q Consensus       595 --------------------------------------------------------------------------------  594 (658)
                                                                                                      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~  364 (784)
T 4ft4_B          285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF  364 (784)
T ss_dssp             HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence                                                                                            


Q ss_pred             --------hhhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          595 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       595 --------l~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                              +....|++|||+||||||+||.+|+++        +...+++|+|+.||++|+|+|+++||+.
T Consensus       365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~  427 (784)
T 4ft4_B          365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY  427 (784)
T ss_dssp             HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred             ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence                    111236899999999999999998642        2335688999999999999999999974

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=99.86  E-value=3e-22  Score=210.73  Aligned_cols=111  Identities=17%  Similarity=0.347  Sum_probs=81.4

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +++|||||||+||+++||+++|+++++++++|+|+.|+++|+.+|..     ..++.+||++++.+.+...     .+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~~~~-----~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEFDRL-----SFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHHHHH-----CCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHcCcC-----CcCE
Confidence            47899999999999999999998778999999999999999987643     2356899999988766432     6999


Q ss_pred             EEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--ccc
Q 006172          605 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SMK  657 (658)
Q Consensus       605 VIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK--~~~  657 (658)
                      |+||||||+||.+|+            +.|++|+|+.||++|+|+|+++|  |++
T Consensus        72 l~~gpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~~~P~~  114 (343)
T 1g55_A           72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPKY  114 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCSE
T ss_pred             EEEcCCCcchhhcCC------------cCCccCccchHHHHHHHHHHHhcCCCCE
Confidence            999999999998754            35788999999999999999998  753

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=99.84  E-value=1e-21  Score=211.85  Aligned_cols=111  Identities=13%  Similarity=0.133  Sum_probs=90.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceee----EEEeeCCHHHHHHHHHHhhhcCCC---------------CC-c-----
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------GE-L-----  578 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~----vvavEid~~a~~t~k~~~~~~n~~---------------g~-l-----  578 (658)
                      .+++||||||||||+++||+++|+++++    +++||+|+.|+++|+++|......               +. .     
T Consensus         9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~   88 (403)
T 4dkj_A            9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG   88 (403)
T ss_dssp             EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred             ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence            4689999999999999999999976666    999999999999999988643100               00 0     


Q ss_pred             --------------------cccccccccChhhHHHhhhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCC-
Q 006172          579 --------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD-  637 (658)
Q Consensus       579 --------------------~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D-  637 (658)
                                          ...+||++++..+++      +.+|||+||||||+||.+|+            +.|++| 
T Consensus        89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag~------------~~g~~d~  150 (403)
T 4dkj_A           89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQGL------------QKGIDKE  150 (403)
T ss_dssp             HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTSC------------CCCCCGG
T ss_pred             cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhCC------------CCCCCcc
Confidence                                024888888876553      35899999999999998764            356776 


Q ss_pred             --CCcchHHHHHHHHHH
Q 006172          638 --FDFSLYYEFVRVVQR  652 (658)
Q Consensus       638 --~Rs~Lf~Ey~RIV~~  652 (658)
                        +|+.||++|+|+|++
T Consensus       151 ~~~r~~L~~~~~rii~~  167 (403)
T 4dkj_A          151 LNTRSGLLWEIERILEE  167 (403)
T ss_dssp             GCCSGGGHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHH
Confidence              999999999999998

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=99.77  E-value=1.3e-19  Score=213.53  Aligned_cols=120  Identities=21%  Similarity=0.261  Sum_probs=93.2

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----Hh--
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----SL--  595 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie----~l--  595 (658)
                      ...++++|||||||||+++||++|||. ++++++|||+.|+.||+.||.     ++.++.+||++|....+.    ..  
T Consensus       537 ~~~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~  610 (1002)
T 3swr_A          537 KLPKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRG  610 (1002)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred             cCCCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhh
Confidence            346799999999999999999999982 679999999999999988653     445667888776432111    10  


Q ss_pred             --hhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          596 --IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       596 --~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                        +...+.+|||+||||||+||.+|+..          ..+..|+|+.||++|+|+|+++||.+
T Consensus       611 ~~lp~~~~vDll~GGpPCQ~FS~ag~~~----------~~~~~d~R~~L~~~~~riv~~~rPk~  664 (1002)
T 3swr_A          611 QRLPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF  664 (1002)
T ss_dssp             CBCCCTTTCSEEEECCCCTTCCSSSCCC----------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred             hhcccCCCeeEEEEcCCCcchhhhCCCC----------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence              11235799999999999999887521          12356889999999999999999864

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.76  E-value=2.4e-19  Score=180.49  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=70.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+++||||||||||   ||+++||++                +     .|+++..++.+||++|+.++|+.    ++++|
T Consensus        32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D   83 (230)
T 2qrv_B           32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD   83 (230)
T ss_dssp             CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred             CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence            56899999999998   899999963                1     13445556789999999988764    47899


Q ss_pred             EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172          604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  656 (658)
Q Consensus       604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~  656 (658)
                      ||+||||||+||.+                   ++|++||++|+|||+++||+
T Consensus        84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk  117 (230)
T 2qrv_B           84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  117 (230)
T ss_dssp             EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence            99999999999964                   25889999999999999997

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=99.76  E-value=1.3e-19  Score=218.17  Aligned_cols=118  Identities=21%  Similarity=0.278  Sum_probs=91.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----H----h
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L  595 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie----~----l  595 (658)
                      .++++|||||||||+++||++||| .++++++|+|+.|++||+.+|.     ++.++.+||.++....+.    .    .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            568999999999999999999998 3679999999999999998653     334567787766432210    0    0


Q ss_pred             hhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          596 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       596 ~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      +...+.+|||+||||||+||.+|+.+          ..+..|+|+.||++|+|+|+.+||++
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS~agr~~----------~~~~~d~R~~L~~~~lriv~~~rPk~  975 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF  975 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTCSSSCCC----------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred             ccccCccceEEecCCCcccccccccc----------cccccchhhHHHHHHHHHHHHhcCcE
Confidence            11235799999999999999887521          12356889999999999999999864

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=99.71  E-value=4.9e-18  Score=181.54  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=74.0

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      -..+++||||||||||   ||++|||++                     ..|+++..++.+||++|+.++|+.    +++
T Consensus       186 ~~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~  237 (386)
T 2pv0_B          186 RRQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGP  237 (386)
T ss_dssp             GCCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCC
T ss_pred             hhcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCC
Confidence            3456999999999997   999999963                     135555566789999999987754    478


Q ss_pred             ccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172          602 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  656 (658)
Q Consensus       602 ~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~  656 (658)
                      +|||+||||||+||.+                   |+|++||++|+|||+++||+
T Consensus       238 ~DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk  273 (386)
T 2pv0_B          238 FDLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  273 (386)
T ss_dssp             CSEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence            9999999999999964                   36889999999999999996

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.50  E-value=4e-14  Score=146.89  Aligned_cols=158  Identities=20%  Similarity=0.303  Sum_probs=116.7

Q ss_pred             ccccccccccchhhHHHHhhhhccCCceeecccccccccccccccccCCCCCCcCCCC-CCCCcccccccCCCccCCCcC
Q 006172          333 YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWPSWD  411 (658)
Q Consensus       333 fF~feNV~~~~~~~w~~is~fL~~~~Pe~vds~~fsaa~R~r~y~hNLP~~~R~~~~p-~~p~ti~e~lp~~~~~wp~wd  411 (658)
                      ||++|||..+-...+.+|.++|. ..+.++||+.|.||+|+|.||.++|...+....+ .+.+|++|+|...+.+     
T Consensus       135 ~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~~-----  208 (295)
T 2qrv_A          135 FWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIA-----  208 (295)
T ss_dssp             EEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCEE-----
T ss_pred             EEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCccc-----
Confidence            78999999998888888999996 6999999999999999999999999876532211 1368999999765432     


Q ss_pred             CCcccceecccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccC
Q 006172          412 TRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAA  491 (658)
Q Consensus       412 ~r~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~il~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~  491 (658)
                      ...++++|++.+..+.           ..++              +.+-.  ..+++.+.|++.|+.||+|||++|+-.+
T Consensus       209 ~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~~~~  261 (295)
T 2qrv_A          209 KFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYTDVS  261 (295)
T ss_dssp             SSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTTCCT
T ss_pred             ccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHeeCC
Confidence            2345556654321110           0000              00111  2346789999999999999999999988


Q ss_pred             CCChHHHHHhhhhhhcccchhhhcccccccCC
Q 006172          492 GNSLTARLESLRHCFQTDTLGYHLSVLKSMFP  523 (658)
Q Consensus       492 ~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~  523 (658)
                      +++.++++|.+||++.++.+.++...|+.++.
T Consensus       262 ~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~  293 (295)
T 2qrv_A          262 NMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA  293 (295)
T ss_dssp             TCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred             CcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988887653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.40  E-value=5.4e-14  Score=148.07  Aligned_cols=177  Identities=13%  Similarity=0.124  Sum_probs=114.2

Q ss_pred             CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-cccccccccc----ccCCCC--------CCcCCCCC
Q 006172          330 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE  391 (658)
Q Consensus       330 ~ppfF~feNV~~~~~-~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~----hNLP~~--------~R~~~~p~  391 (658)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||.+| .||+|+|.|+    ..++..        ..+|..+.
T Consensus       111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~  190 (333)
T 4h0n_A          111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG  190 (333)
T ss_dssp             TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred             CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence            399999999998864 3577777777    7889999999999 9999999997    222211        01121112


Q ss_pred             CCCcccccccC-----------CCccCCCcCCCcc--cce--ecccCC------ch-h-----HHHHHHHHHHhhccCCC
Q 006172          392 PPMTIQDAIPH-----------TKKWWPSWDTRKH--LSC--INSGTS------GI-S-----QLCERFEKLLRDSRGVL  444 (658)
Q Consensus       392 ~p~ti~e~lp~-----------~~~~wp~wd~r~k--~~c--i~t~~~------~~-~-----~l~~~i~~~~~~~~~~~  444 (658)
                      .+.+|.|+|..           +.+||..+|-.+.  .+|  .+..+.      ++ .     ...+++-+.+....+ .
T Consensus       191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-G  269 (333)
T 4h0n_A          191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-G  269 (333)
T ss_dssp             SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT-T
T ss_pred             ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC-C
Confidence            26789999852           1246666663222  222  111110      00 0     011122221111100 0


Q ss_pred             chhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhccccc
Q 006172          445 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  519 (658)
Q Consensus       445 ~~~~q~~il~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK  519 (658)
                       .+.+           +.+..+.++++|+|.|++||+|||++||-...++.++|||.+||+..|++++++.+.|.
T Consensus       270 -~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~  332 (333)
T 4h0n_A          270 -GEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF  332 (333)
T ss_dssp             -CHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             -cccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence             1111           12234678999999999999999999998778999999999999999999999987763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.36  E-value=2.2e-13  Score=143.22  Aligned_cols=178  Identities=15%  Similarity=0.156  Sum_probs=119.1

Q ss_pred             CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-cccccccccc-ccCCCCCCcCCC--CCCCCcccccc
Q 006172          330 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI  400 (658)
Q Consensus       330 ~ppfF~feNV~~~~~-~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~-hNLP~~~R~~~~--p~~p~ti~e~l  400 (658)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||.+| .||+|+|.|+ +.... -.+|..  +.+..+|+|+|
T Consensus       122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L  200 (327)
T 3qv2_A          122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL  200 (327)
T ss_dssp             CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred             CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence            799999999998865 4677777777    7789999999999 9999999994 44433 122221  11358899998


Q ss_pred             cC--------CCccCCCcCCC--------cccceecccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeee
Q 006172          401 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV  464 (658)
Q Consensus       401 p~--------~~~~wp~wd~r--------~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~il~~c~~~nlvW~  464 (658)
                      +.        ..+||..|...        ++-.|.|..+   ++.       ....++.+....    -......++++.
T Consensus       201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~----~~~~~~~~~~~~  266 (327)
T 3qv2_A          201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIE----PHFIPVKKAEDL  266 (327)
T ss_dssp             CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred             cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeeccc----ccccccCCceee
Confidence            62        23344443321        1112322211   000       001111110000    000112356677


Q ss_pred             cccccCCCChhhHHHHhcCCCCCccc-CCCChHHHHHhhhhhhcccchhhhcccccccC
Q 006172          465 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  522 (658)
Q Consensus       465 g~~~~~ple~~E~E~i~GfP~~~Tr~-~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f  522 (658)
                      .+++++.|+|.|+.||+|||.+|+-. .+++.+++||.+||++.+++++++...|+++.
T Consensus       267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l  325 (327)
T 3qv2_A          267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL  325 (327)
T ss_dssp             TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred             cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence            88999999999999999999999977 68999999999999999999999988887653

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=99.29  E-value=5.2e-13  Score=122.16  Aligned_cols=111  Identities=16%  Similarity=0.175  Sum_probs=82.1

Q ss_pred             CCCchhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCC
Q 006172            9 SSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKE   88 (658)
Q Consensus         9 ssS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~   88 (658)
                      |.|...++.+|++||||+++|.||++.+|. |+++++|+|++|+.|++.+-.+.+.         +... .....+    
T Consensus         5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~~---------e~~l-~~~~~~----   69 (118)
T 4ae4_A            5 SPSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLLV---------EEAL-EMHQCS----   69 (118)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHHH---------HHHH-HHCSSC----
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhhh---------HHHH-HhccCC----
Confidence            344567999999999999999999999999 9999999999999987654321100         0000 000000    


Q ss_pred             CCCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           89 EPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        89 e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                         .....++.++++.|+.|||+++.|.+|+.+++.+  ++.=+|.|++.-
T Consensus        70 ---~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~~  115 (118)
T 4ae4_A           70 ---EEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMARA  115 (118)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHC
T ss_pred             ---ccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHhc
Confidence               0002235568999999999999999999999887  588999998863

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=98.82  E-value=1e-09  Score=118.58  Aligned_cols=186  Identities=13%  Similarity=0.135  Sum_probs=111.2

Q ss_pred             cCCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-ccccccccccc------cCCCCCCc---CCC
Q 006172          328 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIP  389 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~~----~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~h------NLP~~~R~---~~~  389 (658)
                      ..+|.||++|||..+-..    .|..|.+.|    |.+.+.++||.+| .||+|.|.|+=      ..|.....   .++
T Consensus       175 ~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~  254 (403)
T 4dkj_A          175 EEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKV  254 (403)
T ss_dssp             GGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGC
T ss_pred             ccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCcccccccccc
Confidence            378999999999998653    566776666    6689999999999 99999999962      12221111   111


Q ss_pred             CCCCCcccccccCC--Ccc-------CCC-cCCCcccceecc-cCCchhHHHHHHHHHHhhccC-CCchhhhHHHHHhhc
Q 006172          390 PEPPMTIQDAIPHT--KKW-------WPS-WDTRKHLSCINS-GTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSE  457 (658)
Q Consensus       390 p~~p~ti~e~lp~~--~~~-------wp~-wd~r~k~~ci~t-~~~~~~~l~~~i~~~~~~~~~-~~~~~~q~~il~~c~  457 (658)
                      ..++.+|.|+|...  .++       .|. ..++.++.+..+ ......+  +  +++.. ..+ .++...      .+.
T Consensus       255 ~~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~-~~~~~~Tlt~------~~~  323 (403)
T 4dkj_A          255 KNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYN-INGIGPTLTA------SGA  323 (403)
T ss_dssp             CCCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEE-TTSBBCCCCS------SSG
T ss_pred             ccccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceec-CCCcccceec------CCC
Confidence            22357999999733  111       111 011111111100 0000000  0  00000 000 000000      011


Q ss_pred             ccceeeecccccCCCChhhHHHHhcCCC-CCcccC--C-CChHHHHHhhhhhhcccchhhhcccccccCCC
Q 006172          458 KLNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG  524 (658)
Q Consensus       458 ~~nlvW~g~~~~~ple~~E~E~i~GfP~-~~Tr~~--~-ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~  524 (658)
                      ..-++-....+++.|+|.|+.||+|||+ +|....  + ++.+++||.+||+..|+++..++..|+..+..
T Consensus       324 ~~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~  394 (403)
T 4dkj_A          324 NSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE  394 (403)
T ss_dssp             GGSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred             CceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence            1122223457899999999999999999 677653  3 79999999999999999999999888876644

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=98.81  E-value=4.6e-10  Score=115.45  Aligned_cols=192  Identities=18%  Similarity=0.173  Sum_probs=101.5

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-cccccccccc----ccCCCCCCcCCCCCCCC
Q 006172          328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM  394 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~----hNLP~~~R~~~~p~~p~  394 (658)
                      ..+|.||++|||..+-.    ..+..|-+.|    |.+.+.++||++| .||+|+|.|+    ..++..--+|.--....
T Consensus       100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~  179 (331)
T 3ubt_Y          100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (331)
T ss_dssp             HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred             ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence            45899999999987743    4566666666    6799999999999 9999999997    33333222122111256


Q ss_pred             cccccccCCC-ccCCCcCCCcc--cceecccC----C---chhHHHHHHHHH------HhhccCCCc-hhhhHHHHHhhc
Q 006172          395 TIQDAIPHTK-KWWPSWDTRKH--LSCINSGT----S---GISQLCERFEKL------LRDSRGVLS-SQQQRDILHRSE  457 (658)
Q Consensus       395 ti~e~lp~~~-~~wp~wd~r~k--~~ci~t~~----~---~~~~l~~~i~~~------~~~~~~~~~-~~~q~~il~~c~  457 (658)
                      |+.|++.... .-+|.+++...  ..++....    .   .......+++..      +...+.... ....+.+...++
T Consensus       180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 3ubt_Y          180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK  259 (331)
T ss_dssp             CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred             cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence            7777762110 11111111000  00000000    0   000000000000      000000000 000000001111


Q ss_pred             ccceee-ecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172          458 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  520 (658)
Q Consensus       458 ~~nlvW-~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~  520 (658)
                      ..+-.+ ..+++.+.|++.|+.||+|||++|+= ...+.++++|.+||+..+....++...++.
T Consensus       260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f-~~~s~~~~ykqiGNAVpp~la~~I~~~I~~  322 (331)
T 3ubt_Y          260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (331)
T ss_dssp             TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEe-CCCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence            111111 13456799999999999999999972 145899999999999998887777665543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=98.73  E-value=1.1e-08  Score=113.02  Aligned_cols=177  Identities=13%  Similarity=0.242  Sum_probs=105.4

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCC---------ceeeccccccccccccccc----ccCCCCCCc
Q 006172          328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF  386 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~---------Pe~vds~~fsaa~R~r~y~----hNLP~~~R~  386 (658)
                      ..+|.||++|||..+-.    ..|..|-+-|    |.+.         +.++||++|.||+|+|.|+    .+++....|
T Consensus       217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F  296 (482)
T 3me5_A          217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF  296 (482)
T ss_dssp             HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred             HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence            46899999999999854    3566676666    4454         7899999999999999997    244433333


Q ss_pred             C------CCCCCCCcccccccCCCccCCCcCCCcccceecccCCchhHHHHHHHHHH----hhccCC----CchhhhHHH
Q 006172          387 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV----LSSQQQRDI  452 (658)
Q Consensus       387 ~------~~p~~p~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~~i~~~~----~~~~~~----~~~~~q~~i  452 (658)
                      .      ..|.++.||.|+|....      +  .|.  ..+     .++-+.+.+.-    .+-+++    .......  
T Consensus       297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~--  359 (482)
T 3me5_A          297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ--  359 (482)
T ss_dssp             CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred             CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence            2      24555678999985211      0  000  000     11111111100    000010    0000000  


Q ss_pred             HHhhcc---------cce-e---e-------------ecccccCCCChhhHHHHhcCCCCCcc--cCCCChHHHHHhhhh
Q 006172          453 LHRSEK---------LNL-V---W-------------VGAYKLGPVDPEHIELILGYPSNHTQ--AAGNSLTARLESLRH  504 (658)
Q Consensus       453 l~~c~~---------~nl-v---W-------------~g~~~~~ple~~E~E~i~GfP~~~Tr--~~~ls~teR~k~Lgn  504 (658)
                       ..|+.         .++ +   |             ....+++.|+|.|+.||+|||...++  .+.++.+.+||.+||
T Consensus       360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN  438 (482)
T 3me5_A          360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN  438 (482)
T ss_dssp             -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred             -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence             00100         011 1   1             01357899999999999999953322  357899999999999


Q ss_pred             hhcccchhhhcccccccC
Q 006172          505 CFQTDTLGYHLSVLKSMF  522 (658)
Q Consensus       505 sfqvdti~~~lsvLK~~f  522 (658)
                      +..++++..+...|+.++
T Consensus       439 sV~v~v~~~i~~~l~~~l  456 (482)
T 3me5_A          439 SVVVPVFAAVAKLLEPKI  456 (482)
T ss_dssp             SCCHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHH
Confidence            999999999888776643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.72  E-value=1e-08  Score=107.61  Aligned_cols=182  Identities=13%  Similarity=0.119  Sum_probs=104.7

Q ss_pred             CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-ccccccccccccCC-CCCC-cCCCCCC---CC
Q 006172          329 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPEP---PM  394 (658)
Q Consensus       329 ~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~hNLP-~~~R-~~~~p~~---p~  394 (658)
                      .+|.||++|||..+-.    ..|..|.+.|    |.+...++||..| .||+|+|.|+=-.- ..+. ....|.|   ..
T Consensus       111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~  190 (327)
T 2c7p_A          111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT  190 (327)
T ss_dssp             HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred             ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence            5899999999998864    3566776666    7788999999999 99999999984321 1110 1123332   57


Q ss_pred             cccccccCC--CccCC-C-----cCCCcccceecccCCchhHHHH-HHHHHHhhcc-CCCchhhhHHHHHh----hcc-c
Q 006172          395 TIQDAIPHT--KKWWP-S-----WDTRKHLSCINSGTSGISQLCE-RFEKLLRDSR-GVLSSQQQRDILHR----SEK-L  459 (658)
Q Consensus       395 ti~e~lp~~--~~~wp-~-----wd~r~k~~ci~t~~~~~~~l~~-~i~~~~~~~~-~~~~~~~q~~il~~----c~~-~  459 (658)
                      |+.|+|...  ..+|. +     |.-..+.......  ....+.. .... ..+.. +.+...    |...    +.+ .
T Consensus       191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~T----i~~~~~~~~~~~~  263 (327)
T 2c7p_A          191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKT--VRLGIVGKGGQG-ERIYSTRGIAIT----LSAYGGGIFAKTG  263 (327)
T ss_dssp             CGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSC--CEEEESTTCCTT-CEEEETTSCBCC----CCSSCCSTTTTTC
T ss_pred             cHHHHhcccCCcccccccCCcceeEeeccccCccch--hhhhhccCCccc-cccccCCCCcCc----eecCCCCccCCCC
Confidence            899998421  11111 1     0000000000000  0000000 0000 00000 001000    0000    111 1


Q ss_pred             ceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhccccccc
Q 006172          460 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM  521 (658)
Q Consensus       460 nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~  521 (658)
                      +.+.  +.+.+.|++.|+.||+|||++|+-  ..+.++++|.+||+..+....++...|+..
T Consensus       264 ~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~  321 (327)
T 2c7p_A          264 GYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGSS  321 (327)
T ss_dssp             EEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHHH
Confidence            2232  677899999999999999999984  589999999999999998888777666543

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.67  E-value=3.8e-09  Score=106.51  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=45.1

Q ss_pred             CCccccccccccchhhHHHHhhhhccCCceeecccccccccccccccccCCCCCC
Q 006172          331 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR  385 (658)
Q Consensus       331 ppfF~feNV~~~~~~~w~~is~fL~~~~Pe~vds~~fsaa~R~r~y~hNLP~~~R  385 (658)
                      |.||++|||..|-......|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus       123 P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~  176 (230)
T 2qrv_B          123 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS  176 (230)
T ss_dssp             CCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred             CcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence            3467899999998888899999994 89999999999999999999999998865

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.56  E-value=6.7e-08  Score=101.67  Aligned_cols=54  Identities=19%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             cccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172          465 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  518 (658)
Q Consensus       465 g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL  518 (658)
                      .+.+++.|++.|+.||+|||++|+=.+.++.+++||.+||+..++.+..++..|
T Consensus       288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l  341 (343)
T 1g55_A          288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL  341 (343)
T ss_dssp             HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence            466789999999999999999999655689999999999999999988776544

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=98.55  E-value=2e-07  Score=85.29  Aligned_cols=104  Identities=11%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCC--CCCCCCCCcccccchhhhHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDN--DGTNEDKSDETLYGTMEITL  175 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~--d~~~ed~~~e~~~~~m~k~~  175 (658)
                      ..+.+.+|+.||||++.|.+|+.++|. + ++..+++|++++.+...+-+.++  .+.  +.. ..... .-....+++.
T Consensus         8 e~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~d~~~--~e~~l~~~-~~~~~-~~~~~~~~v~   81 (118)
T 4ae4_A            8 ERQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGFDPLL--VEEALEMH-QCSEE-KMMEFLQLMS   81 (118)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHC-SSCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCCChhh--hHHHHHhc-cCCcc-ccccCHHHHH
Confidence            567889999999999999999999998 4 59999999999866442210000  000  000 00000 0011225677


Q ss_pred             HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006172          176 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  209 (658)
Q Consensus       176 ~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~A  209 (658)
                      .|..|||++++|..|+-+++-|  ++-=+|.+++
T Consensus        82 ~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~  113 (118)
T 4ae4_A           82 KFKEMGFELKDIKEVLLLHNND--QDNALEDLMA  113 (118)
T ss_dssp             HHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence            9999999999999999999876  3334444443

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=98.53  E-value=5.6e-07  Score=82.46  Aligned_cols=108  Identities=17%  Similarity=0.150  Sum_probs=72.4

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC--c
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN--V   92 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~--~   92 (658)
                      .+.+++.||||++.+.||+...|..+.+.-++.|+..+.-..-.    +..          ..+...+..+...+.-  .
T Consensus         6 ~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~----epl----------~~~~~~s~~~~~~~~l~~~   71 (126)
T 2lbc_A            6 SVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFA----EPL----------TMPGYGGAASAGASVFGAS   71 (126)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSS----CTT----------CCSSCCSSSSSCCCCSTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccc----ccc----------cccccccccccchhhhccc
Confidence            56899999999999999999999999999999999976521100    000          0000000000000000  0


Q ss_pred             -cccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           93 -MDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        93 -~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                       .+.....+.+..|+.|||+++.+.+|+..+|.+  ++.=+++|+.+
T Consensus        72 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~  116 (126)
T 2lbc_A           72 GLDNQPPEEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH  116 (126)
T ss_dssp             SCCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred             ccccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence             000124578999999999999999999999764  57888888865

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=98.21  E-value=1.3e-06  Score=100.46  Aligned_cols=56  Identities=9%  Similarity=0.045  Sum_probs=44.9

Q ss_pred             cccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhh
Q 006172          457 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH  514 (658)
Q Consensus       457 ~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~  514 (658)
                      ...+..|+-+.+.+.|+|.|+.||+|||++|+=  .-+.++++|.+||+.-++....+
T Consensus       678 ~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f--~Gs~~~~ykQIGNAVpp~lA~aI  733 (784)
T 4ft4_B          678 EPHNQVIIHPTQARVLTIRENARLQGFPDYYRL--FGPIKEKYIQVGNAVAVPVARAL  733 (784)
T ss_dssp             CSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCC--CSCHHHHHHHHHHSCCHHHHHHH
T ss_pred             cCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEe--CCCHHHHHhhccCCCCHHHHHHH
Confidence            334455666778899999999999999999974  55899999999999866655444

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=98.05  E-value=2e-05  Score=72.21  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcc-------cccchhh
Q 006172          100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDE-------TLYGTME  172 (658)
Q Consensus       100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e-------~~~~~m~  172 (658)
                      +.+..|+.||||+..+.+|+..||..+ ++.-+++|+.++--...+.-. + ......... ...+       .+-...+
T Consensus         5 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di~epl-~-~~~~~s~~~-~~~~~l~~~~~~~~~~e~   80 (126)
T 2lbc_A            5 SSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDFAEPL-T-MPGYGGAAS-AGASVFGASGLDNQPPEE   80 (126)
T ss_dssp             HHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSSSCTT-C-CSSCCSSSS-SCCCCSTTSSCCCCCCHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccccccc-c-ccccccccc-cchhhhcccccccCcCHH
Confidence            478999999999999999999998854 689999999986532211000 0 000000000 0000       1112335


Q ss_pred             hHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006172          173 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG  210 (658)
Q Consensus       173 k~~~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~Aa  210 (658)
                      ++..|+.|||++++|..|+..||-+  ++.=++.++..
T Consensus        81 ~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~  116 (126)
T 2lbc_A           81 IVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH  116 (126)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            6779999999999999999999864  66667777643

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.02  E-value=2.4e-06  Score=91.23  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=41.6

Q ss_pred             ccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172          466 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  520 (658)
Q Consensus       466 ~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~  520 (658)
                      +.+-++|++-|.-||+|||++|.=  ..+.++.+|.+||+.-+.....+-..++.
T Consensus       313 P~~~R~lTvRE~ARlQsFPD~f~f--~g~~~~~~~qIGNAVPp~la~aia~~I~~  365 (376)
T 3g7u_A          313 PYHPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLYN  365 (376)
T ss_dssp             SSSSSBCCHHHHHHHHTCCTTCCC--CSSHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CccCcCCCHHHHHHhCCCCcceEE--CCChHHhheeeecCCCHHHHHHHHHHHHH
Confidence            457799999999999999999974  56788999999999866555444444443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.74  E-value=6.4e-05  Score=78.67  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=61.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||||||.|++++.+.+.|.   .|++||+++.+.+..+.+....+...  ..++.+|+.++...    +....+.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~  225 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST  225 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence            456899999999999999999986   37899999999998888765433221  23556676554221    1112357


Q ss_pred             ccEEEecCCCCCcc
Q 006172          602 IDFVICQNSVPQIP  615 (658)
Q Consensus       602 ~DLVIGGpPCQ~FS  615 (658)
                      ||+|+..|||.+.+
T Consensus       226 fD~Ii~dPP~~~~~  239 (332)
T 2igt_A          226 YDIILTDPPKFGRG  239 (332)
T ss_dssp             BSEEEECCCSEEEC
T ss_pred             ceEEEECCccccCC
Confidence            99999999997655

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=97.74  E-value=1.6e-05  Score=85.42  Aligned_cols=56  Identities=18%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             CCccccccccccchhhHHHHhhhhccCCceeecccccccccccccccccCCCCCCcC
Q 006172          331 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH  387 (658)
Q Consensus       331 ppfF~feNV~~~~~~~w~~is~fL~~~~Pe~vds~~fsaa~R~r~y~hNLP~~~R~~  387 (658)
                      |.||++|||..|......+|.+||. +.+.+|||++|.+++|+|-||+|+|+++|..
T Consensus       279 P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~~  334 (386)
T 2pv0_B          279 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSRH  334 (386)
T ss_dssp             CCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTTC
T ss_pred             CcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCcC
Confidence            4478999999998888889999995 8999999999977666666999999998743

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.65  E-value=0.00012  Score=77.74  Aligned_cols=86  Identities=19%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||||||+|++++.+.+.|.  ..|++||+++.+.+..+.+....+. . ...++.+|+.++..    .+......
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~  293 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK  293 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence            557899999999999999999885  4589999999999998887654322 1 22345667654421    12112357


Q ss_pred             ccEEEecCCCCCcc
Q 006172          602 IDFVICQNSVPQIP  615 (658)
Q Consensus       602 ~DLVIGGpPCQ~FS  615 (658)
                      ||+|+..||+...+
T Consensus       294 fD~Ii~dpP~~~~~  307 (396)
T 3c0k_A          294 FDVIVMDPPKFVEN  307 (396)
T ss_dssp             EEEEEECCSSTTTC
T ss_pred             CCEEEECCCCCCCC
Confidence            99999999987665

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.47  E-value=0.00013  Score=75.26  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172          521 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       521 ~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+..+-+|||+|||+|++++.+-+.|-.  -|+++|+|+.+.+.++.+-...+-.+ ..++.+|.+++..         .
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~--~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~  190 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E  190 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence            3456789999999999999988777742  47899999999999988755433222 2245677776543         2


Q ss_pred             CCccEEEecCCCCC
Q 006172          600 GSIDFVICQNSVPQ  613 (658)
Q Consensus       600 g~~DLVIGGpPCQ~  613 (658)
                      +.+|.|+-++|+-.
T Consensus       191 ~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          191 NIADRILMGYVVRT  204 (278)
T ss_dssp             SCEEEEEECCCSSG
T ss_pred             cCCCEEEECCCCcH
Confidence            56999999999754

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.44  E-value=0.00022  Score=69.12  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=61.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|++.+.|.+.|.   .++++|+++.+.+..+.+....+. ....++.+|+.++.         ..+.|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~  145 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------SFLKA  145 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------GGCCC
T ss_pred             CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------ccCCC
Confidence            457899999999999999999985   468999999998888876544321 12234566665543         12579


Q ss_pred             cEEEecCCCCCccc
Q 006172          603 DFVICQNSVPQIPN  616 (658)
Q Consensus       603 DLVIGGpPCQ~FS~  616 (658)
                      |+|+..+||..+..
T Consensus       146 D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          146 DVVFLSPPWGGPDY  159 (241)
T ss_dssp             SEEEECCCCSSGGG
T ss_pred             CEEEECCCcCCcch
Confidence            99999999998774

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.43  E-value=0.00033  Score=66.10  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||++||.|++...+.+.|..  .++++|+++.+.+..+.+....+. ...++.+|+.++.           +.||
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D  114 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD  114 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence            4568999999999999999998863  588999999998888876543321 2335567776653           3699


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+..||+...+
T Consensus       115 ~v~~~~p~~~~~  126 (207)
T 1wy7_A          115 IVIMNPPFGSQR  126 (207)
T ss_dssp             EEEECCCCSSSS
T ss_pred             EEEEcCCCcccc
Confidence            999999976554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.41  E-value=0.00021  Score=72.22  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+-+|||+|||.|++++.+.+.|..  .|+++|+++.+....+.+....+... ..++.+|+.++..         .+.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~  192 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI  192 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence            44678999999999999999999864  57899999999988887765433222 2256778776653         257


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+..+|+..
T Consensus       193 fD~Vi~~~p~~~  204 (278)
T 2frn_A          193 ADRILMGYVVRT  204 (278)
T ss_dssp             EEEEEECCCSSG
T ss_pred             ccEEEECCchhH
Confidence            999999999653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=97.37  E-value=0.00024  Score=84.62  Aligned_cols=50  Identities=6%  Similarity=-0.041  Sum_probs=39.4

Q ss_pred             cccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172          467 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  518 (658)
Q Consensus       467 ~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL  518 (658)
                      .+.++|++-|..||+|||++|.=  .-+.+++++.+||+.-+.....+...+
T Consensus       945 ~~~R~lt~rE~arlQ~fPd~~~f--~g~~~~~~~qiGNaVp~~~~~~i~~~i  994 (1002)
T 3swr_A          945 EQHRVVSVRECARSQGFPDTYRL--FGNILDKHRQVGNAVPPPLAKAIGLEI  994 (1002)
T ss_dssp             SSSSBCCHHHHHHHTTCCTTCCC--CSSHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHhCCCCcceEE--cCChHHHheeeeccCCHHHHHHHHHHH
Confidence            35688999999999999999974  558899999999998766555443333

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.18  E-value=0.00092  Score=71.03  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||||||.|++++.+.+.|.  .-|++||+++.+.+..+.+....+..  ...++.+|+.++    +..+......
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~  285 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT  285 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence            457899999999999999998885  35889999999999888876543322  223556676543    2222212347


Q ss_pred             ccEEEecCCCCCcc
Q 006172          602 IDFVICQNSVPQIP  615 (658)
Q Consensus       602 ~DLVIGGpPCQ~FS  615 (658)
                      ||+|+.-||+-..+
T Consensus       286 fD~Ii~DPP~~~~~  299 (385)
T 2b78_A          286 YDIIIIDPPSFARN  299 (385)
T ss_dssp             EEEEEECCCCC---
T ss_pred             ccEEEECCCCCCCC
Confidence            99999999986433

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.17  E-value=0.0006  Score=61.64  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ++.+-+|||+.||.|.+...+.+.|..   ++++|+++.+.+..+.+....+. ...++.+|+.+..    ..+....+.
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~  110 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER  110 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence            445678999999999999999999864   88999999998888876554322 2234556665421    111111246


Q ss_pred             ccEEEecCCCC
Q 006172          602 IDFVICQNSVP  612 (658)
Q Consensus       602 ~DLVIGGpPCQ  612 (658)
                      +|+|+..+|..
T Consensus       111 ~D~i~~~~~~~  121 (171)
T 1ws6_A          111 FTVAFMAPPYA  121 (171)
T ss_dssp             EEEEEECCCTT
T ss_pred             eEEEEECCCCc
Confidence            99999988854

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.14  E-value=0.00072  Score=70.43  Aligned_cols=76  Identities=13%  Similarity=0.163  Sum_probs=56.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ..+-+|||||||+|++++. .+ |-  ..++++|+++.+.+..+.+....+. ....++.+|+.++.           +.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~  258 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK  258 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence            4567899999999999988 55 42  4588999999999988887654332 12335567776553           47


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+..||...
T Consensus       259 fD~Vi~dpP~~~  270 (336)
T 2yx1_A          259 GNRVIMNLPKFA  270 (336)
T ss_dssp             EEEEEECCTTTG
T ss_pred             CcEEEECCcHhH
Confidence            999999988654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.11  E-value=0.00047  Score=64.53  Aligned_cols=82  Identities=18%  Similarity=0.344  Sum_probs=58.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+||||+||.|++.+.+...|.  ..++++|+++.+.+..+.+....+.....++.+|+.++...    +  ..+.||
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD  115 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD  115 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence            457899999999999997777775  35889999999998888876544322233456666544211    0  136799


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +|+..+|...
T Consensus       116 ~i~~~~p~~~  125 (189)
T 3p9n_A          116 LVLADPPYNV  125 (189)
T ss_dssp             EEEECCCTTS
T ss_pred             EEEECCCCCc
Confidence            9999888543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.00081  Score=67.81  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=59.7

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +..+-+|||+|||+|++++.+.+.+-. ..++++|+++.+.+..+.+....+.....++.+|+.++ ..        .+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~  186 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV  186 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence            345678999999999999998877422 24789999999999888876543323334667888776 32        247


Q ss_pred             ccEEEecCCC
Q 006172          602 IDFVICQNSV  611 (658)
Q Consensus       602 ~DLVIGGpPC  611 (658)
                      +|+|+-.+|.
T Consensus       187 ~D~Vi~d~p~  196 (272)
T 3a27_A          187 ADRVIMGYVH  196 (272)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEECCcc
Confidence            9999999986

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.08  E-value=0.0005  Score=54.71  Aligned_cols=41  Identities=10%  Similarity=0.360  Sum_probs=37.6

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   53 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a   53 (658)
                      ++-++.++.|||++++|.+|++..|....+.-+|.|+..+-
T Consensus        10 ~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~   50 (54)
T 2cos_A           10 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG   50 (54)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence            56789999999999999999999999999999999998653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.06  E-value=0.00063  Score=72.98  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+|||.|++++.+.+.|.  + |++||+++.+.+..+.+....+... .+..+|+.++-    .   ...+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence            467899999999999999999886  3 8899999999988887765433221 23345554321    1   1124599


Q ss_pred             EEEecCCC
Q 006172          604 FVICQNSV  611 (658)
Q Consensus       604 LVIGGpPC  611 (658)
                      +|+.-|||
T Consensus       283 ~Ii~dpP~  290 (393)
T 4dmg_A          283 HVLLDPPT  290 (393)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999999

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.04  E-value=0.00078  Score=64.45  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=55.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.+||||+||.|.+++.+...|..  .|+++|+++.+.+..+.+....+.....++.+|+.++..       ...+.||+
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~  125 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI  125 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence            468999999999999987777753  578999999999988887654432222344566543211       11257999


Q ss_pred             EEecCC
Q 006172          605 VICQNS  610 (658)
Q Consensus       605 VIGGpP  610 (658)
                      |+..+|
T Consensus       126 V~~~~p  131 (202)
T 2fpo_A          126 VFVDPP  131 (202)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999888

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.04  E-value=0.00091  Score=54.81  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=36.1

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      ..+.+|+.|||+++.+.||+...|..|.+.-+|+|+...
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~   49 (64)
T 1whc_A           11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE   49 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence            378999999999999999999999889999999999864

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.04  E-value=0.0007  Score=68.15  Aligned_cols=88  Identities=16%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||++||.||.+..+...  |-  ..++++|+++...+.++.+....+.....++.+|+.++...    +....+.
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~  156 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF  156 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence            4678999999999999888763  31  24789999999988888766544322333455666544211    0011357


Q ss_pred             ccEEEecCCCCCcccC
Q 006172          602 IDFVICQNSVPQIPNS  617 (658)
Q Consensus       602 ~DLVIGGpPCQ~FS~a  617 (658)
                      ||+|+..+||.++...
T Consensus       157 fD~Vl~d~Pcs~~g~~  172 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIK  172 (274)
T ss_dssp             EEEEEEEECCC-----
T ss_pred             CCEEEEcCCCCCCccc
Confidence            9999999999987643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.00  E-value=0.00082  Score=64.26  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC--CCCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~--~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+||||+||.|++++.+...|.  ..|+++|+++.+.+..+.+....+.  ....++.+|+.++...    +  ..+.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~  124 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQP  124 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCC
Confidence            346899999999999998777775  3588999999999888876654322  1223445665443210    0  1256


Q ss_pred             -ccEEEecCCC
Q 006172          602 -IDFVICQNSV  611 (658)
Q Consensus       602 -~DLVIGGpPC  611 (658)
                       ||+|+..+|.
T Consensus       125 ~fD~I~~~~~~  135 (201)
T 2ift_A          125 HFDVVFLDPPF  135 (201)
T ss_dssp             CEEEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence             9999998883

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.00  E-value=0.00082  Score=55.17  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=36.6

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      -..+.+++.||||++.+.||+...|..+.+.=+|+|+..+
T Consensus        10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~   49 (64)
T 2crn_A           10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC   49 (64)
T ss_dssp             CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            3478999999999999999999999999999999999854

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.99  E-value=0.00074  Score=54.97  Aligned_cols=48  Identities=13%  Similarity=0.204  Sum_probs=38.9

Q ss_pred             CCCCCCCchhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172            5 ENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   53 (658)
Q Consensus         5 ~~~assS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a   53 (658)
                      +|.++......+.+++.|||+++.+.+|++..+. |.+.-+|+|+....
T Consensus         2 ~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~   49 (63)
T 2dak_A            2 SSGSSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHID   49 (63)
T ss_dssp             CCCSCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence            3444433445789999999999999999999986 79999999998643

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.96  E-value=0.0014  Score=69.35  Aligned_cols=86  Identities=20%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||||||+|++++.+.+.|.  .-++++|+++.+.+..+.+....+.. ...++.+|+.++..    .+....+.|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f  290 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF  290 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence            567899999999999999998875  35889999999999888876543221 12244566654321    121123579


Q ss_pred             cEEEecCCCCCcc
Q 006172          603 DFVICQNSVPQIP  615 (658)
Q Consensus       603 DLVIGGpPCQ~FS  615 (658)
                      |+|+.-||+-..+
T Consensus       291 D~Vi~dpP~~~~~  303 (396)
T 2as0_A          291 DIVVLDPPAFVQH  303 (396)
T ss_dssp             EEEEECCCCSCSS
T ss_pred             CEEEECCCCCCCC
Confidence            9999999975543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.87  E-value=0.0019  Score=60.87  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||++||.|++...+.+.|.  ..++++|+++.+....+.+..     ...++.+|+.++.           +.||
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D  112 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  112 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence            457899999999999999998875  358899999999888776432     2335677877653           4799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+..+|-..+.
T Consensus       113 ~v~~~~p~~~~~  124 (200)
T 1ne2_A          113 TWIMNPPFGSVV  124 (200)
T ss_dssp             EEEECCCC----
T ss_pred             EEEECCCchhcc
Confidence            999998866544

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.87  E-value=0.00076  Score=51.74  Aligned_cols=36  Identities=14%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      ...+.++++|||+++.+.+|++..|  |.+.-+|+|+.
T Consensus        10 ~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~   45 (47)
T 2ekk_A           10 QQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLT   45 (47)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHc
Confidence            3477999999999999999999997  89999999985

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.86  E-value=0.0011  Score=54.11  Aligned_cols=42  Identities=19%  Similarity=0.278  Sum_probs=37.3

Q ss_pred             chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      .+..+.+..|+.|||+++.+.+|++++|.+  |+..+|.|+++.
T Consensus        17 ~se~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~   58 (63)
T 1wgn_A           17 PSERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            345677999999999999999999999986  799999999874

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.77  E-value=0.0017  Score=50.47  Aligned_cols=40  Identities=13%  Similarity=0.108  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           97 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        97 ~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      ...++++.|+.|||++++|.+|+..+|.+  ++.-+++|+..
T Consensus         7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g   46 (49)
T 1ify_A            7 EYETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            36778999999999999999999999874  47889999863

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.73  E-value=0.0032  Score=62.21  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|++.+.+.+.+-.  .++++|+++.+....+.+....+... ..++.+|+.++... +     ..+.|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f  120 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA  120 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence            4678999999999999999888752  57899999999888887765443222 33566787765421 1     13579


Q ss_pred             cEEEecCCCCCc
Q 006172          603 DFVICQNSVPQI  614 (658)
Q Consensus       603 DLVIGGpPCQ~F  614 (658)
                      |+|+.-||+-..
T Consensus       121 D~Ii~npPy~~~  132 (259)
T 3lpm_A          121 DIVTCNPPYFAT  132 (259)
T ss_dssp             EEEEECCCC---
T ss_pred             cEEEECCCCCCC
Confidence            999999998766

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.73  E-value=0.0036  Score=59.92  Aligned_cols=83  Identities=14%  Similarity=0.153  Sum_probs=58.6

Q ss_pred             CCCCCcccccCCC-CChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          522 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       522 f~~~l~vLdLFSG-iGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+.+|||+.|| .|.+.+.+.+. +.   .++++|+++.+.+..+.+....+. ...++.+|+..+..  +     ..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~  121 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V-----VE  121 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T-----CC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c-----cc
Confidence            3467899999999 99999999887 54   478999999998888876554332 23355677653332  1     12


Q ss_pred             CCccEEEecCCCCCcc
Q 006172          600 GSIDFVICQNSVPQIP  615 (658)
Q Consensus       600 g~~DLVIGGpPCQ~FS  615 (658)
                      +.||+|+.-||+-...
T Consensus       122 ~~fD~I~~npp~~~~~  137 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKP  137 (230)
T ss_dssp             SCEEEEEECCCCC---
T ss_pred             CceeEEEECCCCcCCc
Confidence            5799999999986654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.73  E-value=0.0026  Score=67.20  Aligned_cols=85  Identities=20%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+|||.|++++.+.+.+   .-++++|+++.+....+.+....+.....++.+|+.++..    .+....+.||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence            45789999999999999988763   4588999999999888876654332223345666654321    1211235799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+.-||+-..+
T Consensus       282 ~Ii~dpP~~~~~  293 (382)
T 1wxx_A          282 LVVLDPPAFAKG  293 (382)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEECCCCCCCC
Confidence            999999985544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.67  E-value=0.0017  Score=68.27  Aligned_cols=83  Identities=10%  Similarity=0.063  Sum_probs=57.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc------
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------  598 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~------  598 (658)
                      +-+|||||||+|++++.|.+.+   .-|+++|+++.+.+..+.+....+.....++.+|+.++..    .+...      
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l  286 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL  286 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence            4579999999999999888744   3588999999999988887654332233355667654321    11110      


Q ss_pred             ------cCCccEEEecCCCCCc
Q 006172          599 ------LGSIDFVICQNSVPQI  614 (658)
Q Consensus       599 ------~g~~DLVIGGpPCQ~F  614 (658)
                            .+.||+|+--||+.+.
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~g~  308 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRSGL  308 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTTCC
T ss_pred             cccccccCCCCEEEECcCcccc
Confidence                  0369999999998754

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=96.66  E-value=0.0037  Score=67.00  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      .|..+++|||+++.|.|||...+- |.+.=+|+|++-
T Consensus       171 ~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~g  206 (368)
T 1oqy_A          171 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG  206 (368)
T ss_dssp             HHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence            689999999999999999999997 999999999753

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.65  E-value=0.0014  Score=55.36  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=35.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+++..|+.|||++++|..|+.+|+.+  ++.-+|+|+..+
T Consensus        29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~   68 (73)
T 1vg5_A           29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS   68 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence            5678999999999999999999999875  688899999764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.63  E-value=0.0039  Score=57.22  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|++.+.+.+.|.  .-++++|+++.+.+..+.+....+.. ...++.+|+.+...    .+....+.|
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f  117 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF  117 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence            456899999999999998777764  35789999999988887765443211 12245566654321    111113679


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+..+|
T Consensus       118 D~i~~~~~  125 (187)
T 2fhp_A          118 DLVLLDPP  125 (187)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998877

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.62  E-value=0.0033  Score=72.26  Aligned_cols=81  Identities=20%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||||||.|++++.+-+.|..  -|++||+++.+....+.+....+..  ...++.+|+.++-    .   ...+.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~  609 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ  609 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence            4678999999999999999888863  4889999999999888876543322  1224456655421    1   12357


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+.-|||-.
T Consensus       610 fD~Ii~DPP~f~  621 (703)
T 3v97_A          610 FDLIFIDPPTFS  621 (703)
T ss_dssp             EEEEEECCCSBC
T ss_pred             ccEEEECCcccc
Confidence            999999999843

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.60  E-value=0.0075  Score=62.64  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=57.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++..        ..+.+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~  273 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV  273 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence            45789999999999988777654 11 2368999999999988887655432223356677776542        12458


Q ss_pred             cEEEecCCCC
Q 006172          603 DFVICQNSVP  612 (658)
Q Consensus       603 DLVIGGpPCQ  612 (658)
                      |+|+.-|||-
T Consensus       274 D~Ii~npPyg  283 (354)
T 3tma_A          274 DRILANPPHG  283 (354)
T ss_dssp             SEEEECCCSC
T ss_pred             CEEEECCCCc
Confidence            9999999983

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.59  E-value=0.0034  Score=59.20  Aligned_cols=85  Identities=19%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006172          517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  596 (658)
Q Consensus       517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~  596 (658)
                      .|..+.+.+.+|||+.||.|.+...+.+.|.  ..++++|+++.+.+..+.+....+.....+..+|+.+..        
T Consensus        53 ~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------  122 (205)
T 3grz_A           53 GIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--------  122 (205)
T ss_dssp             HHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--------
T ss_pred             HHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--------
Confidence            3444445668999999999999999999875  357899999998888777654433222335566665432        


Q ss_pred             hccCCccEEEecCCCCC
Q 006172          597 HKLGSIDFVICQNSVPQ  613 (658)
Q Consensus       597 ~~~g~~DLVIGGpPCQ~  613 (658)
                        .+.+|+|+..+|.+.
T Consensus       123 --~~~fD~i~~~~~~~~  137 (205)
T 3grz_A          123 --DGKFDLIVANILAEI  137 (205)
T ss_dssp             --CSCEEEEEEESCHHH
T ss_pred             --CCCceEEEECCcHHH
Confidence              257999999887654

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.57  E-value=0.0035  Score=47.00  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  137 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a  137 (658)
                      .+.+..|+.|||+++.+.+|+..|+-+  ++.=+++|+.
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~~   41 (43)
T 2g3q_A            5 SLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHHc
Confidence            467899999999999999999999763  5777888874

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.55  E-value=0.005  Score=63.50  Aligned_cols=86  Identities=10%  Similarity=0.021  Sum_probs=61.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.||.+..+....-.-..++++|+++...+..+.+....+.....++.+|+.++..        ..+.||
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  189 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD  189 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence            457899999999999988876521112478999999998888876654333233455677765532        125799


Q ss_pred             EEEecCCCCCcccC
Q 006172          604 FVICQNSVPQIPNS  617 (658)
Q Consensus       604 LVIGGpPCQ~FS~a  617 (658)
                      +|+.-+||.+....
T Consensus       190 ~Il~d~Pcsg~g~~  203 (315)
T 1ixk_A          190 KILLDAPCTGSGTI  203 (315)
T ss_dssp             EEEEECCTTSTTTC
T ss_pred             EEEEeCCCCCcccc
Confidence            99999999887643

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=96.54  E-value=0.0038  Score=76.41  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=40.8

Q ss_pred             cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-ccccccccccc
Q 006172          328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH  378 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~h  378 (658)
                      ..+|.||++|||..+-.    ..+..|.+.|    |.+...++||..| .||+|.|.|+=
T Consensus       970 ~~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A          970 YYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp             HHCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred             HhcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence            35799999999999853    2455565554    6788999999999 99999999963

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.52  E-value=0.0041  Score=67.30  Aligned_cols=77  Identities=19%  Similarity=0.300  Sum_probs=58.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      ..+-+|||||||.|.+++.|.+.|.   -++++|+++.+.+..+.+....+.. ..++.+|+.++...          .|
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f  354 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF  354 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence            4567899999999999999988875   4789999999988888766543322 34567777765321          69


Q ss_pred             cEEEecCCCCC
Q 006172          603 DFVICQNSVPQ  613 (658)
Q Consensus       603 DLVIGGpPCQ~  613 (658)
                      |+|+.-||..+
T Consensus       355 D~Vv~dPPr~g  365 (425)
T 2jjq_A          355 DTVIVDPPRAG  365 (425)
T ss_dssp             SEEEECCCTTC
T ss_pred             CEEEEcCCccc
Confidence            99999888643

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.50  E-value=0.0032  Score=51.22  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  140 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~  140 (658)
                      ..+++..|+.|||+++.+.+|+..++.+  ++.-+++|+.++-
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~~   49 (63)
T 2dak_A            9 PEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID   49 (63)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence            3468899999999999999999999874  6899999998753

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.49  E-value=0.0021  Score=59.04  Aligned_cols=79  Identities=15%  Similarity=0.246  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||+.||.|.+...+.+.|.  ..++++|+++.+.+..+.+....+.. ...++.+|+.+.    +.   ...+.|
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~---~~~~~f  101 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----ID---CLTGRF  101 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----HH---HBCSCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh----HH---hhcCCC
Confidence            456899999999999998888874  35789999999988888765433211 122344555432    11   122569


Q ss_pred             cEEEecCCC
Q 006172          603 DFVICQNSV  611 (658)
Q Consensus       603 DLVIGGpPC  611 (658)
                      |+|+..+|.
T Consensus       102 D~i~~~~~~  110 (177)
T 2esr_A          102 DLVFLDPPY  110 (177)
T ss_dssp             EEEEECCSS
T ss_pred             CEEEECCCC
Confidence            999988774

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.49  E-value=0.0018  Score=60.38  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...++.+|+.+    .+.......+.|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f  102 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW  102 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence            45689999999999999999988532 2478999999988777654432211 12234555554    111111123789


Q ss_pred             cEEEecCCCCCcc
Q 006172          603 DFVICQNSVPQIP  615 (658)
Q Consensus       603 DLVIGGpPCQ~FS  615 (658)
                      |+|+..||+-...
T Consensus       103 D~i~~npp~~~~~  115 (215)
T 4dzr_A          103 HAIVSNPPYIPTG  115 (215)
T ss_dssp             SEEEECCCCCC--
T ss_pred             cEEEECCCCCCCc
Confidence            9999999986544

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.43  E-value=0.0057  Score=63.49  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=60.5

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||++||.||.++.+-.+ +=. ..|+++|+++...+.++.+....+.....++.+|..++....     ..++.|
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f  175 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  175 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence            4578999999999999887653 211 247899999999998888765443223345667877665321     113579


Q ss_pred             cEEEecCCCCCcccC
Q 006172          603 DFVICQNSVPQIPNS  617 (658)
Q Consensus       603 DLVIGGpPCQ~FS~a  617 (658)
                      |+|+--+||.++...
T Consensus       176 D~Vl~D~PcSg~G~~  190 (309)
T 2b9e_A          176 HYILLDPSCSGSGMP  190 (309)
T ss_dssp             EEEEECCCCCC----
T ss_pred             CEEEEcCCcCCCCCC
Confidence            999999999987753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.43  E-value=0.0051  Score=61.35  Aligned_cols=82  Identities=9%  Similarity=0.029  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|++.+.+...- +-..++++|+++.+.+..+.+....+.....+..+|+.+.-         ..+.||
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~fD  178 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQFA  178 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCCEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCCcc
Confidence            45789999999999999887541 11247899999999988887655433222334556664321         125799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+.-|||.+..
T Consensus       179 ~Iv~npPy~~~~  190 (276)
T 2b3t_A          179 MIVSNPPYIDEQ  190 (276)
T ss_dssp             EEEECCCCBCTT
T ss_pred             EEEECCCCCCcc
Confidence            999999998764

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.42  E-value=0.0042  Score=50.80  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  140 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~  140 (658)
                      .+++..|+.|||+++.|.+|+..|+.+  ++.-+++|+..+.
T Consensus        10 ~~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~   49 (63)
T 1wji_A           10 EKALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK   49 (63)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence            467899999999999999999999874  6889999998754

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.42  E-value=0.0059  Score=59.69  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~-~  599 (658)
                      .+.+|||+.||.|++...+...  +.   .++++|+++.+.+..+.+....+... ..++.+|+.+.-.+.+.   .. .
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~  138 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE  138 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence            4678999999999988777654  43   47899999999888877655433222 23556776552111111   00 1


Q ss_pred             CCccEEEecCCCCCcc
Q 006172          600 GSIDFVICQNSVPQIP  615 (658)
Q Consensus       600 g~~DLVIGGpPCQ~FS  615 (658)
                      +.||+|+..||+-...
T Consensus       139 ~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          139 IIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CCBSEEEECCCCC---
T ss_pred             CcccEEEECCCCccCc
Confidence            4799999999987554

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.41  E-value=0.0019  Score=49.45  Aligned_cols=38  Identities=13%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      ..+++..|+.|||+++.+.+|+..+|  + ++.-+++|+.+
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~h   46 (47)
T 2ekk_A            9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLTH   46 (47)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHcC
Confidence            35688999999999999999999997  2 68889998753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.40  E-value=0.0037  Score=67.30  Aligned_cols=80  Identities=9%  Similarity=0.015  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhh-c
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K  598 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~-~  598 (658)
                      .+.+|||||||+|++++-+-..  |.  .-|++||+++.+.+.++.+-...+-..  ..++.+|+.++        +. .
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~  121 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE  121 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence            4578999999999998866553  43  458899999999999998765432211  22344554332        22 1


Q ss_pred             -cCCccEEEecCCCCC
Q 006172          599 -LGSIDFVICQNSVPQ  613 (658)
Q Consensus       599 -~g~~DLVIGGpPCQ~  613 (658)
                       .+.||+|+--|||..
T Consensus       122 ~~~~fD~V~lDP~g~~  137 (392)
T 3axs_A          122 WGFGFDYVDLDPFGTP  137 (392)
T ss_dssp             CSSCEEEEEECCSSCC
T ss_pred             hCCCCcEEEECCCcCH
Confidence             247999999987753

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.39  E-value=0.0053  Score=56.73  Aligned_cols=84  Identities=13%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      ++...+.+.+|||+.||.|.++..|.+.|.   -|+++|+++.+.+..+.+....+.....++.+|+..+..     +  
T Consensus        16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~--   85 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----Y--   85 (185)
T ss_dssp             HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----T--
T ss_pred             HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----h--
Confidence            445556778999999999999999998865   378999999998887776554322222233344443321     1  


Q ss_pred             ccCCccEEEecCCC
Q 006172          598 KLGSIDFVICQNSV  611 (658)
Q Consensus       598 ~~g~~DLVIGGpPC  611 (658)
                      ..+.||+|+..+|.
T Consensus        86 ~~~~fD~v~~~~~~   99 (185)
T 3mti_A           86 VREPIRAAIFNLGY   99 (185)
T ss_dssp             CCSCEEEEEEEEC-
T ss_pred             ccCCcCEEEEeCCC
Confidence            12579999876543

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.37  E-value=0.004  Score=50.99  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=33.9

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172          101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus       101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      .+..|+.|||+++.+.+|+..+|..+ ++.-+++|+.++
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~~   49 (64)
T 1whc_A           12 ALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHE   49 (64)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhCC
Confidence            68999999999999999999998654 599999999874

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.31  E-value=0.0064  Score=59.61  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=55.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCccccccccccChhhHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL  595 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~--------n~~g~l~~~~DI~~Lt~~~Ie~l  595 (658)
                      .+.+|||++||.|++.+.+.+.+-. ..+++||+++.+....+.+....        +.....++.+|+.+.-...+   
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~---  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF---  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence            4678999999999999999888732 24789999999887776654321        11223355677765211111   


Q ss_pred             hhccCCccEEEecCCCCCc
Q 006172          596 IHKLGSIDFVICQNSVPQI  614 (658)
Q Consensus       596 ~~~~g~~DLVIGGpPCQ~F  614 (658)
                        ..+.+|.|+-..|...+
T Consensus       125 --~~~~~d~v~~~~p~p~~  141 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHF  141 (246)
T ss_dssp             --CTTCEEEEEEESCCCC-
T ss_pred             --cccccCEEEEECCCccc
Confidence              12578888877776443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.28  E-value=0.0095  Score=62.82  Aligned_cols=80  Identities=19%  Similarity=0.130  Sum_probs=58.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+.+|||++||.|++.+.+.+.|.. ..++++|+|+.+.+..+.+....+. ....+..+|+.++..        ..+.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~  286 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--------YVDS  286 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG--------TCSC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc--------ccCC
Confidence            45678999999999999999888852 1478999999998888877654322 112345677766542        1257


Q ss_pred             ccEEEecCCC
Q 006172          602 IDFVICQNSV  611 (658)
Q Consensus       602 ~DLVIGGpPC  611 (658)
                      +|+|+.-||.
T Consensus       287 fD~Ii~npPy  296 (373)
T 3tm4_A          287 VDFAISNLPY  296 (373)
T ss_dssp             EEEEEEECCC
T ss_pred             cCEEEECCCC
Confidence            9999998885

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=96.26  E-value=0.0049  Score=45.04  Aligned_cols=36  Identities=31%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI  135 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I  135 (658)
                      ..+++..|+.|||+++.+.+|+..|+-+  ++.=+++|
T Consensus         4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L   39 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence            5668999999999999999999999764  45555555

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.26  E-value=0.0051  Score=53.10  Aligned_cols=41  Identities=20%  Similarity=0.166  Sum_probs=36.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  140 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~  140 (658)
                      ..+++..|+.|||+++.|.+|+.+++-+  ++.-+++|+.++-
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~~   69 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHGG   69 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence            4568999999999999999999999976  6889999998754

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.26  E-value=0.0089  Score=60.80  Aligned_cols=82  Identities=16%  Similarity=0.204  Sum_probs=59.1

Q ss_pred             CCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+|||+.||.|.+.+.+.+. +.   .++++|+++.+.+..+.+....+... ..++.+|+.+.-    .   ..++.+
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----~---~~f~~~  193 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----K---EKFASI  193 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----G---GGTTTC
T ss_pred             CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc----c---cccCCC
Confidence            468999999999999999887 43   47899999999998887765433222 335567776421    1   123344


Q ss_pred             cEEEecCCCCCccc
Q 006172          603 DFVICQNSVPQIPN  616 (658)
Q Consensus       603 DLVIGGpPCQ~FS~  616 (658)
                      |+|+.-|||-+...
T Consensus       194 D~IvsnPPyi~~~~  207 (284)
T 1nv8_A          194 EMILSNPPYVKSSA  207 (284)
T ss_dssp             CEEEECCCCBCGGG
T ss_pred             CEEEEcCCCCCccc
Confidence            99999999988763

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.25  E-value=0.0019  Score=52.79  Aligned_cols=37  Identities=24%  Similarity=0.483  Sum_probs=34.7

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      .++.+++|||+++.+.||+|..|. |++..+|.|++..
T Consensus        22 ~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~   58 (63)
T 1wgn_A           22 CVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence            789999999999999999999998 9999999999864

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.19  E-value=0.0057  Score=50.01  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=34.2

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      .+..+++|||+++.|.+|++..+. |.+.-+|+|++.+
T Consensus        12 ~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~   48 (63)
T 1wji_A           12 ALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSN   48 (63)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence            679999999999999999999986 8999999999864

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=96.17  E-value=0.0058  Score=48.18  Aligned_cols=42  Identities=19%  Similarity=0.129  Sum_probs=36.5

Q ss_pred             chhHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           96 GLHIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        96 s~~~~~~~~lv~MGF-~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+.+++..|+.||| +++.+.+|+..+|-+  ++.-+++|+..+
T Consensus         9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~   51 (53)
T 2knz_A            9 VRFQQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence            347789999999999 999999999999974  688899998764

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.14  E-value=0.005  Score=46.14  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      .+..+++|||+++.+.+|++..+. |.+.=+|+|+.
T Consensus         7 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~   41 (43)
T 2g3q_A            7 AVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHc
Confidence            579999999999999999999965 89999999985

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.13  E-value=0.0058  Score=67.03  Aligned_cols=86  Identities=17%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.||.++.+-.+ +=. -.|+++|+++...+.++.+....+.....+..+|..++.     ..  ..+.|
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F  176 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF  176 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence            4679999999999999887654 211 147899999999998888765443222223445554332     11  12579


Q ss_pred             cEEEecCCCCCcccC
Q 006172          603 DFVICQNSVPQIPNS  617 (658)
Q Consensus       603 DLVIGGpPCQ~FS~a  617 (658)
                      |+|+--+||.+....
T Consensus       177 D~Il~DaPCSg~G~~  191 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMF  191 (456)
T ss_dssp             EEEEEECCCCCGGGT
T ss_pred             CEEEECCCCCCcccc
Confidence            999999999987753

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.12  E-value=0.011  Score=51.01  Aligned_cols=41  Identities=22%  Similarity=0.181  Sum_probs=35.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+.+..|+.|||+++.+.+|+...|..+ ++.=+++|+.++
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h~   69 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHM   69 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhCC
Confidence            45689999999999999999999988654 588899999874

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.09  E-value=0.0066  Score=51.10  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+++..|+.|||+++.+.+|+..+|..+ ++.=+++|+.++
T Consensus         9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~~   49 (74)
T 2dag_A            9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHM   49 (74)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence            34688999999999999999999999643 588899999874

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.03  E-value=0.005  Score=51.82  Aligned_cols=39  Identities=13%  Similarity=0.240  Sum_probs=36.0

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      ..+.+|+.|||+++.+.||+...|..|.+.=+|+|+...
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~   49 (74)
T 2dag_A           11 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM   49 (74)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            377999999999999999999999889999999999864

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.01  E-value=0.0072  Score=61.93  Aligned_cols=79  Identities=18%  Similarity=0.106  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+.||.|.++..|.+.|.   -++++|+|+......+.+....+.....++.+|+.++.          ++.+|
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~----------~~~~D  108 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV----------FPKFD  108 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC----------CCCCS
T ss_pred             CcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC----------cccCC
Confidence            457899999999999999988874   47899999999888877654322222335667776654          24689


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|++-+|++..+
T Consensus       109 ~Vv~n~py~~~~  120 (299)
T 2h1r_A          109 VCTANIPYKISS  120 (299)
T ss_dssp             EEEEECCGGGHH
T ss_pred             EEEEcCCccccc
Confidence            999999977543

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.01  E-value=0.007  Score=49.65  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172          101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus       101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      .+..|+.||||++.+.+|+..+|..+ ++.=+++|++++
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h~   49 (64)
T 2crn_A           12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHC   49 (64)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence            46899999999999999999998854 589999999874

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.00  E-value=0.0044  Score=48.13  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=32.6

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      .+..+++|||+++.|.+|++..|- |.+.-+|+|++
T Consensus        11 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~   45 (49)
T 1ify_A           11 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence            579999999999999999999986 89999999987

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.98  E-value=0.0096  Score=65.47  Aligned_cols=86  Identities=16%  Similarity=-0.016  Sum_probs=60.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+||||.||.||.++.+-.+--.--.|+++|+++...+.++.+....+.. ..+..+|..++.     ..  ..+.||
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD  172 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH  172 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence            4678999999999999888754111114789999999999988876554333 334556655432     11  135799


Q ss_pred             EEEecCCCCCcccC
Q 006172          604 FVICQNSVPQIPNS  617 (658)
Q Consensus       604 LVIGGpPCQ~FS~a  617 (658)
                      +|+--+||.+....
T Consensus       173 ~Il~D~PcSg~G~~  186 (464)
T 3m6w_A          173 RVLLDAPCSGEGMF  186 (464)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEECCCcCCcccc
Confidence            99999999987754

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=95.98  E-value=0.0092  Score=64.72  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +-+||||+||+|+.++.|-+.|.   -|++||+|+.+....+.+....  +.....++.+|+.+.-.. +.     .+.|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence            67899999999999999999885   4789999999999988877543  221233567787654211 11     1379


Q ss_pred             cEEEecCCCC
Q 006172          603 DFVICQNSVP  612 (658)
Q Consensus       603 DLVIGGpPCQ  612 (658)
                      |+|+--||=.
T Consensus       165 DvV~lDPPrr  174 (410)
T 3ll7_A          165 DYIYVDPARR  174 (410)
T ss_dssp             SEEEECCEEC
T ss_pred             eEEEECCCCc
Confidence            9999888744

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.97  E-value=0.012  Score=58.75  Aligned_cols=89  Identities=16%  Similarity=0.068  Sum_probs=58.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~---~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+||||.||.|.+.+.+.+.+-. ..+++||+++.+....+.+...   .+... ..++.+|+.++....+... ...
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~-~~~  113 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG-LPD  113 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT-CCT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc-cCC
Confidence            4568999999999999988876522 3578999999998888876543   22111 2356778876632211100 012


Q ss_pred             CCccEEEecCCCCCc
Q 006172          600 GSIDFVICQNSVPQI  614 (658)
Q Consensus       600 g~~DLVIGGpPCQ~F  614 (658)
                      +.||+|+..||....
T Consensus       114 ~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCEEEEEECCCC---
T ss_pred             CCcCEEEECCCCcCC
Confidence            579999999998765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.93  E-value=0.015  Score=55.01  Aligned_cols=76  Identities=22%  Similarity=0.323  Sum_probs=56.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+-||.|.+...+.+.|.   .++++|+++......+.+....+ ....++.+|+.++..        ..+.+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~~  104 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKTF  104 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTCE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCcE
Confidence            3467999999999999999999986   47899999998887776654332 333456778776541        12479


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+..++
T Consensus       105 D~v~~~~~  112 (227)
T 1ve3_A          105 DYVIFIDS  112 (227)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEcCc
Confidence            99987766

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.92  E-value=0.0076  Score=61.25  Aligned_cols=78  Identities=17%  Similarity=0.085  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||+-||.|.++..|.+.|.   -++++|+|+......+......+. ....++.+|+.++.          ++.+
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~----------~~~f   94 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----------LPFF   94 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----------CCCC
T ss_pred             CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc----------chhh
Confidence            457899999999999999998885   378999999998888775532211 12235567776653          2368


Q ss_pred             cEEEecCCCCCc
Q 006172          603 DFVICQNSVPQI  614 (658)
Q Consensus       603 DLVIGGpPCQ~F  614 (658)
                      |+|++..|++-.
T Consensus        95 D~vv~nlpy~~~  106 (285)
T 1zq9_A           95 DTCVANLPYQIS  106 (285)
T ss_dssp             SEEEEECCGGGH
T ss_pred             cEEEEecCcccc
Confidence            999999998754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=95.91  E-value=0.014  Score=62.91  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+||||+||.|.+++.|.+.+.   -++++|+++.+.+..+.+....+.....++.+|+.+.-..    +....+.||
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~----~~~~~~~fD  358 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK----QPWAKNGFD  358 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS----SGGGTTCCS
T ss_pred             CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh----hhhhcCCCC
Confidence            456899999999999999988864   4789999999988888776543322334567787663211    001124799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+.-||..+..
T Consensus       359 ~Vv~dPPr~g~~  370 (433)
T 1uwv_A          359 KVLLDPARAGAA  370 (433)
T ss_dssp             EEEECCCTTCCH
T ss_pred             EEEECCCCccHH
Confidence            999999987653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=95.91  E-value=0.0073  Score=64.42  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc---------------CCCCCcccccccccc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL  587 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~---------------n~~g~l~~~~DI~~L  587 (658)
                      .+.+|||||||+|++++.+-.. |-  .-|+++|+++.+.+..+.+....               +.....++.+|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence            4678999999999999887765 52  23789999999999998876543               111112233444322


Q ss_pred             ChhhHHHhhhc-cCCccEEEecCCCC
Q 006172          588 TTKKFESLIHK-LGSIDFVICQNSVP  612 (658)
Q Consensus       588 t~~~Ie~l~~~-~g~~DLVIGGpPCQ  612 (658)
                              ... .+.||+|+--|||.
T Consensus       125 --------~~~~~~~fD~I~lDP~~~  142 (378)
T 2dul_A          125 --------MAERHRYFHFIDLDPFGS  142 (378)
T ss_dssp             --------HHHSTTCEEEEEECCSSC
T ss_pred             --------HHhccCCCCEEEeCCCCC
Confidence                    222 24799999888886

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.85  E-value=0.011  Score=65.06  Aligned_cols=86  Identities=9%  Similarity=0.059  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||++||.||.+..+... +-. -.|+++|+++...+.++.+....+.....+..+|..++..     .  ..+.|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f  188 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF  188 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence            4678999999999999887764 211 2478999999999888877654332223345566655421     0  12579


Q ss_pred             cEEEecCCCCCcccC
Q 006172          603 DFVICQNSVPQIPNS  617 (658)
Q Consensus       603 DLVIGGpPCQ~FS~a  617 (658)
                      |+|+.-+||.+....
T Consensus       189 D~Il~D~PcSg~G~~  203 (479)
T 2frx_A          189 DAILLDAPCSGEGVV  203 (479)
T ss_dssp             EEEEEECCCCCGGGG
T ss_pred             CEEEECCCcCCcccc
Confidence            999999999987643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.80  E-value=0.025  Score=53.28  Aligned_cols=81  Identities=17%  Similarity=0.085  Sum_probs=58.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      ..+.+|||+.||.|.+...|.+.|.   .++++|+++......+.+....+.....+..+|+.+...        ..+.|
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~  144 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ--------ARAPF  144 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc--------cCCCc
Confidence            3567899999999999999988875   478999999998888876654332233355677765432        12579


Q ss_pred             cEEEecCCCCCc
Q 006172          603 DFVICQNSVPQI  614 (658)
Q Consensus       603 DLVIGGpPCQ~F  614 (658)
                      |+|+...++..+
T Consensus       145 D~i~~~~~~~~~  156 (210)
T 3lbf_A          145 DAIIVTAAPPEI  156 (210)
T ss_dssp             EEEEESSBCSSC
T ss_pred             cEEEEccchhhh
Confidence            999987666544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.74  E-value=0.022  Score=51.97  Aligned_cols=77  Identities=10%  Similarity=0.023  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+.||.|.+...+.+.|.   .++++|+++.+....+.+....+...  ..+..+|+.+...         .+.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~  119 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence            457899999999999999888865   47899999999888877654432222  2345566654221         257


Q ss_pred             ccEEEecCCCC
Q 006172          602 IDFVICQNSVP  612 (658)
Q Consensus       602 ~DLVIGGpPCQ  612 (658)
                      +|+|+..+|..
T Consensus       120 ~D~v~~~~~~~  130 (194)
T 1dus_A          120 YNKIITNPPIR  130 (194)
T ss_dssp             EEEEEECCCST
T ss_pred             ceEEEECCCcc
Confidence            99999876643

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.73  E-value=0.0099  Score=49.90  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=34.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+++..|+.|||+++.|.+|+..||.  .++.=+++|+..+
T Consensus        29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~   68 (73)
T 1wiv_A           29 DQSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS   68 (73)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence            456899999999999999999999986  3688899998763

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.72  E-value=0.0081  Score=51.76  Aligned_cols=39  Identities=18%  Similarity=0.277  Sum_probs=36.1

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      ..+..++.|||+++.+.||+...|..|.+.=+|+|+...
T Consensus        31 ~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~   69 (84)
T 1vek_A           31 EIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHM   69 (84)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            378999999999999999999999889999999999864

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=95.71  E-value=0.018  Score=61.30  Aligned_cols=77  Identities=18%  Similarity=0.288  Sum_probs=59.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+||||.||.|.+.+.+.+.|.+   +++||+++.+....+.+....+. ...++.+|+.+....        .+.||
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~---V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~--------~~~fD  300 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAE---VVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTE--------EARFD  300 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCE---EEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCT--------TCCEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhcccc--------CCCeE
Confidence            4578999999999999999999864   68899999999888877654322 234566777665421        25799


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+..+|..
T Consensus       301 ~Ii~npp~~  309 (381)
T 3dmg_A          301 IIVTNPPFH  309 (381)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCchh
Confidence            999988865

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.70  E-value=0.01  Score=61.39  Aligned_cols=80  Identities=13%  Similarity=-0.022  Sum_probs=54.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCce----eeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKL----KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~----k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|||+.||.|++.+.+.+..-..    ..++++|+++.+.++.+.+....+. ...+..+|.....         ..
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~  199 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV  199 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence            45799999999999998886553211    3578999999998888776543322 2234456643211         12


Q ss_pred             CCccEEEecCCCCC
Q 006172          600 GSIDFVICQNSVPQ  613 (658)
Q Consensus       600 g~~DLVIGGpPCQ~  613 (658)
                      +.||+|++-||..-
T Consensus       200 ~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          200 DPVDVVISDLPVGY  213 (344)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             CCccEEEECCCCCC
Confidence            57999999999743

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.70  E-value=0.007  Score=49.58  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      .+.+++.||||++.+.+|+...|..|.+.=+|+|+..
T Consensus        22 ~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~   58 (64)
T 2cpw_A           22 ALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   58 (64)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            6799999999999999999999987999999999963

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.68  E-value=0.016  Score=54.01  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=59.3

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      |..+.+.+.+|||+-||.|.+...+.+.|..  .++++|+++.+....+.....  .....+...|+.++..        
T Consensus        36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~--------  103 (215)
T 2pxx_A           36 LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF--------  103 (215)
T ss_dssp             HGGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------
T ss_pred             HHHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------
Confidence            3334456789999999999999999999873  578999999998887765432  1233355677776531        


Q ss_pred             ccCCccEEEecCCCC
Q 006172          598 KLGSIDFVICQNSVP  612 (658)
Q Consensus       598 ~~g~~DLVIGGpPCQ  612 (658)
                      ..+.||+|+...+..
T Consensus       104 ~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A          104 PSASFDVVLEKGTLD  118 (215)
T ss_dssp             CSSCEEEEEEESHHH
T ss_pred             CCCcccEEEECcchh
Confidence            125799999766543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.68  E-value=0.019  Score=61.41  Aligned_cols=79  Identities=11%  Similarity=0.096  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  566 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k  566 (658)
                      .+.++||+|||.|++.+.+...+.++                                     ..++++|+|+.+.+..+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            45789999999999876555443321                                     13789999999999888


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 006172          567 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       567 ~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  611 (658)
                      .+....+... ..++.+|+.++..         .+.+|+||.-||-
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCCC
Confidence            8765543222 3356678876653         1479999999883

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.66  E-value=0.007  Score=49.56  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172          101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus       101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      .+..|+.|||+++.+.+|+..+|..+ ++.=+++|+.+
T Consensus        22 ~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~   58 (64)
T 2cpw_A           22 ALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSH   58 (64)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhC
Confidence            68999999999999999999998733 58889999865

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=95.59  E-value=0.034  Score=59.54  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=34.2

Q ss_pred             chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      +...+.+..|+.|||+++.|.+||..++.+ . +.=+|+|++.
T Consensus       166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn-~-~~A~e~L~~g  206 (368)
T 1oqy_A          166 SEYETMLTEIMSMGYERERVVAALRASYNN-P-HRAVEYLLTG  206 (368)
T ss_dssp             TTHHHHHHHHHTTTCCSHHHHHHHHHSCSS-T-THHHHTTTTS
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHcCCC-H-HHHHHHHHhC
Confidence            347889999999999999999999999874 3 6778888643

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.59  E-value=0.01  Score=50.03  Aligned_cols=37  Identities=16%  Similarity=0.384  Sum_probs=34.1

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      .+..+++|||+++.|.+|++..+- |.+.-+|+||+.+
T Consensus        32 ~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~   68 (73)
T 1vg5_A           32 QIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS   68 (73)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence            789999999999999999999986 8999999999743

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=95.59  E-value=0.012  Score=60.92  Aligned_cols=96  Identities=15%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             hhhhhcc--cchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc
Q 006172          502 LRHCFQT--DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV  579 (658)
Q Consensus       502 Lgnsfqv--dti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~  579 (658)
                      +|-.|-+  .++..++..+..  ..+-+|||+-||.|.++..|.+.|-   -|++||+|+.....++..+..  .....+
T Consensus        28 ~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~v  100 (295)
T 3gru_A           28 LGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIEI  100 (295)
T ss_dssp             --CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEEE
T ss_pred             cCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeEE
Confidence            3554522  234444444432  2456899999999999999998874   478999999998888876542  123346


Q ss_pred             ccccccccChhhHHHhhhccCCccEEEecCCCC
Q 006172          580 QIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       580 ~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  612 (658)
                      +.+|+.++....        ..+|+|++..|-+
T Consensus       101 i~gD~l~~~~~~--------~~fD~Iv~NlPy~  125 (295)
T 3gru_A          101 IWGDALKVDLNK--------LDFNKVVANLPYQ  125 (295)
T ss_dssp             EESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred             EECchhhCCccc--------CCccEEEEeCccc
Confidence            788988775322        2589999888743

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.58  E-value=0.031  Score=53.37  Aligned_cols=96  Identities=18%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             cccccccCCCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcccccccc
Q 006172          515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQ  585 (658)
Q Consensus       515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~  585 (658)
                      +..|......+.+|||+-||.|.+...+.+.+-    +-..++++|+++...+..+.+....+     .....+..+|+.
T Consensus        71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  150 (227)
T 2pbf_A           71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY  150 (227)
T ss_dssp             HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred             HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence            344443344568999999999999998887653    11247899999998887776654332     122334567776


Q ss_pred             ccChhhHHHhhhccCCccEEEecCCCCCc
Q 006172          586 ALTTKKFESLIHKLGSIDFVICQNSVPQI  614 (658)
Q Consensus       586 ~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  614 (658)
                      +......    ...+.||+|+...++..+
T Consensus       151 ~~~~~~~----~~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          151 QVNEEEK----KELGLFDAIHVGASASEL  175 (227)
T ss_dssp             GCCHHHH----HHHCCEEEEEECSBBSSC
T ss_pred             hcccccC----ccCCCcCEEEECCchHHH
Confidence            5431111    112579999988877644

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.57  E-value=0.025  Score=61.22  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.||.+..+...--.-..++++|+++...+.++.+....+.....+..+|+.++... +     ..+.||
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD  332 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD  332 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence            4578999999999999888764211124789999999988888765543332333556777665421 1     114699


Q ss_pred             EEEecCCCCCcccC
Q 006172          604 FVICQNSVPQIPNS  617 (658)
Q Consensus       604 LVIGGpPCQ~FS~a  617 (658)
                      +|+.-+||.++...
T Consensus       333 ~Vl~D~Pcsg~g~~  346 (450)
T 2yxl_A          333 KVLLDAPCTSSGTI  346 (450)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEcCCCCCCeee
Confidence            99999999988754

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.54  E-value=0.015  Score=62.05  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=54.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL  565 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~  565 (658)
                      ..+.+|||+|||.|++.+.+-..|.++                                     ..++++|+|+.+.+..
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            345789999999999877665544221                                     2478999999999888


Q ss_pred             HHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccEEEecCC
Q 006172          566 KRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  610 (658)
Q Consensus       566 k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  610 (658)
                      +.+....+.. ...+..+|+.++..         .+.+|+||.-||
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP  310 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP  310 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred             HHHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence            8766544321 12245677766543         246999999988

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.54  E-value=0.022  Score=56.43  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+...|.+.|.+   ++++|+++.+....+.+....+. ...+..+|+.++..         .+.||
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD  186 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD  186 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence            4578999999999999999999974   68999999998887776544322 23355677766542         25789


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+...+..
T Consensus       187 ~i~~~~~~~  195 (286)
T 3m70_A          187 FIVSTVVFM  195 (286)
T ss_dssp             EEEECSSGG
T ss_pred             EEEEccchh
Confidence            998876544

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=95.52  E-value=0.012  Score=46.13  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=32.9

Q ss_pred             hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172           98 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITA  137 (658)
Q Consensus        98 ~~~~~~~lv~MGF-~eeev~~Ai~~~G~d~~i~~L~d~I~a  137 (658)
                      +.+++..|+.||| +++.+.+|+..+|-+  ++.-+++|+.
T Consensus        12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~   50 (52)
T 2jy5_A           12 FQQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG   50 (52)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence            5678999999999 999999999999874  5788888864

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.51  E-value=0.014  Score=61.16  Aligned_cols=96  Identities=11%  Similarity=0.081  Sum_probs=58.7

Q ss_pred             Hhhhhhhcccchhhhc-ccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 006172          500 ESLRHCFQTDTLGYHL-SVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE  577 (658)
Q Consensus       500 k~Lgnsfqvdti~~~l-svLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~  577 (658)
                      +.+|..|..+.+...+ ..+..  +.+.+|||+.||.|++.+.+.+. +-. ..++++|+++.+.+..         ...
T Consensus        16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~   83 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA   83 (421)
T ss_dssp             -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred             ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence            4456666555444432 22322  24559999999999999988763 111 3578999999874321         122


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 006172          578 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  616 (658)
Q Consensus       578 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  616 (658)
                      .++.+|+.+...         .+.||+|++-||......
T Consensus        84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~  113 (421)
T 2ih2_A           84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE  113 (421)
T ss_dssp             EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred             cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence            355677765432         257999999999977653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.44  E-value=0.026  Score=51.06  Aligned_cols=75  Identities=11%  Similarity=0.032  Sum_probs=53.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++.+....+.+....+.....++.+|+.+    .++     .+.+|
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D  102 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN  102 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence            456899999999999999988443   578999999998888776544322222344556543    111     15799


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+..+|
T Consensus       103 ~i~~~~~  109 (183)
T 2yxd_A          103 KAFIGGT  109 (183)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9998887

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=95.44  E-value=0.014  Score=54.42  Aligned_cols=82  Identities=12%  Similarity=0.076  Sum_probs=55.8

Q ss_pred             CCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+.+|||+.||.|.+...+.+. |-. ..++++|+++.+.+..+.+....+. ....++.+|+.++..     .  ..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~   91 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID   91 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence            345679999999999999888765 211 1478999999998888776554321 122345677655432     1  12


Q ss_pred             CCccEEEecCCC
Q 006172          600 GSIDFVICQNSV  611 (658)
Q Consensus       600 g~~DLVIGGpPC  611 (658)
                      +.||+|+..+|-
T Consensus        92 ~~fD~v~~~~~~  103 (197)
T 3eey_A           92 CPVKAVMFNLGY  103 (197)
T ss_dssp             SCEEEEEEEESB
T ss_pred             CCceEEEEcCCc
Confidence            579999988766

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.43  E-value=0.016  Score=57.47  Aligned_cols=75  Identities=13%  Similarity=0.177  Sum_probs=53.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+-||.|.+.+.+.+.|.   -++++|+++.+....+.+....+.. ..+..+|+.+.    +     ..+.|
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f  185 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF  185 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence            4567999999999999999999996   4789999999988888765443221 22334454331    1     12579


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+...+
T Consensus       186 D~Vv~n~~  193 (254)
T 2nxc_A          186 DLLVANLY  193 (254)
T ss_dssp             EEEEEECC
T ss_pred             CEEEECCc
Confidence            99997554

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.42  E-value=0.01  Score=55.18  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=50.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +-+|||+.||.|.+...+.+.|    .++++|+++.+.+.       .  ....++.+|+.+.-.         .+.||+
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~---------~~~fD~   81 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSIN---------QESVDV   81 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBC---------GGGCSE
T ss_pred             CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhcc---------cCCCCE
Confidence            4589999999999999999988    47899999997654       1  123356778765221         146999


Q ss_pred             EEecCCCCCcc
Q 006172          605 VICQNSVPQIP  615 (658)
Q Consensus       605 VIGGpPCQ~FS  615 (658)
                      |+..+|-...+
T Consensus        82 i~~n~~~~~~~   92 (170)
T 3q87_B           82 VVFNPPYVPDT   92 (170)
T ss_dssp             EEECCCCBTTC
T ss_pred             EEECCCCccCC
Confidence            99988765443

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.39  E-value=0.017  Score=49.81  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=35.4

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   53 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a   53 (658)
                      ..+..++.|||+++.|.+|++..+. |.+.=+|+|+..+.
T Consensus        31 e~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~   69 (83)
T 1veg_A           31 ESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGG   69 (83)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence            3679999999999999999999996 69999999999765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=95.37  E-value=0.036  Score=52.11  Aligned_cols=80  Identities=11%  Similarity=0.009  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+...+.+.|-. ..++++|+++.+.+..+.+....+.....++.+|+.+.-.        ..+.+|
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D  110 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD  110 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence            4678999999999999999988722 2478999999998888776544332222344566543221        225799


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+.+.+..
T Consensus       111 ~i~~~~~~~  119 (204)
T 3e05_A          111 RVFIGGSGG  119 (204)
T ss_dssp             EEEESCCTT
T ss_pred             EEEECCCCc
Confidence            999877654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.33  E-value=0.013  Score=59.28  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=63.3

Q ss_pred             Hhhhhhhccc--chhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 006172          500 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  577 (658)
Q Consensus       500 k~Lgnsfqvd--ti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~  577 (658)
                      |.+|-.|-+|  .+..++..+..  ..+-+|||+-||.|.++..|.+.|-   -++++|+|+.....++..+..  ....
T Consensus         5 k~~GQnFL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v   77 (255)
T 3tqs_A            5 KRFGQHFLHDSFVLQKIVSAIHP--QKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI   77 (255)
T ss_dssp             ----CCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred             CcCCcccccCHHHHHHHHHhcCC--CCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence            3445555332  33333433321  2457899999999999999998884   478999999999888876543  1223


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEecCC
Q 006172          578 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  610 (658)
Q Consensus       578 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  610 (658)
                      .++.+|+.++.-..+.    ..+.+| |||-+|
T Consensus        78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred             EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence            4678899888643321    113567 777776

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.33  E-value=0.027  Score=60.22  Aligned_cols=79  Identities=10%  Similarity=0.088  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  566 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k  566 (658)
                      .+.++||.|||.|++.+.+...+.++                                     ..++++|+|+.+.+..+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            45789999999999876555443321                                     13789999999999888


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 006172          567 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       567 ~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  611 (658)
                      .+....+... ..++.+|+.++..         ...+|+|+.-||-
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~~l~~---------~~~fD~Iv~NPPY  310 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQDFKT---------NKINGVLISNPPY  310 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHHCCc---------cCCcCEEEECCch
Confidence            8765543222 2345678777653         1479999998884

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.29  E-value=0.056  Score=46.46  Aligned_cols=40  Identities=18%  Similarity=0.138  Sum_probs=34.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+.+..|+.|||+++.+.+|+..|+.  .++.=+++|+.++
T Consensus        29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~   68 (83)
T 2dai_A           29 DEAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA   68 (83)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            456899999999999999999999954  3688999999874

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.25  E-value=0.034  Score=53.05  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             cccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccC
Q 006172          515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALT  588 (658)
Q Consensus       515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~~Lt  588 (658)
                      +..|......+.+|||+-||.|++...+.+. |-. ..++++|+++...+..+.+....+     .....+..+|+....
T Consensus        68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (226)
T 1i1n_A           68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  146 (226)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence            4444434456789999999999999888765 422 247899999998887776554321     111224456665332


Q ss_pred             hhhHHHhhhccCCccEEEecCCCCCc
Q 006172          589 TKKFESLIHKLGSIDFVICQNSVPQI  614 (658)
Q Consensus       589 ~~~Ie~l~~~~g~~DLVIGGpPCQ~F  614 (658)
                      .        ..+.||+|+...||..+
T Consensus       147 ~--------~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A          147 A--------EEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             G--------GGCCEEEEEECSBBSSC
T ss_pred             c--------cCCCcCEEEECCchHHH
Confidence            1        13579999999998765

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.20  E-value=0.03  Score=52.91  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=58.4

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChhh
Q 006172          517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKK  591 (658)
Q Consensus       517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-----g~l~~~~DI~~Lt~~~  591 (658)
                      .++.+.+.+.+|||+-||.|.+...+...|.+   ++++|+++.+.+..+.+....+..     ...+...|+.++..  
T Consensus        23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--   97 (235)
T 3sm3_A           23 IIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF--   97 (235)
T ss_dssp             THHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--
T ss_pred             HHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--
Confidence            34455667889999999999999999999874   688999999988877654332110     01234566655431  


Q ss_pred             HHHhhhccCCccEEEecCCCC
Q 006172          592 FESLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       592 Ie~l~~~~g~~DLVIGGpPCQ  612 (658)
                            ..+.||+|+......
T Consensus        98 ------~~~~~D~v~~~~~l~  112 (235)
T 3sm3_A           98 ------HDSSFDFAVMQAFLT  112 (235)
T ss_dssp             ------CTTCEEEEEEESCGG
T ss_pred             ------CCCceeEEEEcchhh
Confidence                  125799999765443

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.19  E-value=0.044  Score=50.51  Aligned_cols=74  Identities=16%  Similarity=0.121  Sum_probs=54.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.+|||+-||.|.+...+.+.|.+   ++++|+++.+....+......+.....+...|+.++..         .+.+|+
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~  100 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF  100 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence            459999999999999999998874   68899999988887776544322233345677766532         257899


Q ss_pred             EEecCC
Q 006172          605 VICQNS  610 (658)
Q Consensus       605 VIGGpP  610 (658)
                      |+...+
T Consensus       101 v~~~~~  106 (199)
T 2xvm_A          101 ILSTVV  106 (199)
T ss_dssp             EEEESC
T ss_pred             EEEcch
Confidence            886654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.17  E-value=0.033  Score=50.77  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=55.7

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+.+|||+-||.|.+...+.+.|.+   ++++|+++.+....+....     ...++..|+.++..        ..+.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~  107 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD  107 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence            456789999999999999999999864   6889999998877765432     23355677766531        1257


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      +|+|+..+++-.
T Consensus       108 ~D~i~~~~~~~~  119 (195)
T 3cgg_A          108 FDLIVSAGNVMG  119 (195)
T ss_dssp             EEEEEECCCCGG
T ss_pred             eeEEEECCcHHh
Confidence            999998655543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.16  E-value=0.037  Score=59.30  Aligned_cols=86  Identities=12%  Similarity=0.109  Sum_probs=62.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.||.+..+...+-. -.++++|+++...+..+.+....+. ...+..+|..++... +     ..+.||
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD  317 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD  317 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence            4578999999999999998887633 3578999999988888876654322 223456777655311 1     125799


Q ss_pred             EEEecCCCCCcccC
Q 006172          604 FVICQNSVPQIPNS  617 (658)
Q Consensus       604 LVIGGpPCQ~FS~a  617 (658)
                      +|+.-+||.++...
T Consensus       318 ~Vl~D~Pcsg~g~~  331 (429)
T 1sqg_A          318 RILLDAPCSATGVI  331 (429)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEeCCCCccccc
Confidence            99999999988754

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.14  E-value=0.023  Score=54.32  Aligned_cols=82  Identities=17%  Similarity=0.147  Sum_probs=57.5

Q ss_pred             hcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH
Q 006172          514 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE  593 (658)
Q Consensus       514 ~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie  593 (658)
                      .+..+..+.+.+.+|||+-||.|.+...|.+.|.+   ++++|+++.+....+...   ...+..++.+|+.++..    
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~----  112 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF----  112 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS----
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC----
Confidence            34445555667789999999999999999999874   678999999887766532   12233355677776542    


Q ss_pred             HhhhccCCccEEEecC
Q 006172          594 SLIHKLGSIDFVICQN  609 (658)
Q Consensus       594 ~l~~~~g~~DLVIGGp  609 (658)
                          ..+.||+|+...
T Consensus       113 ----~~~~fD~v~~~~  124 (242)
T 3l8d_A          113 ----ENEQFEAIMAIN  124 (242)
T ss_dssp             ----CTTCEEEEEEES
T ss_pred             ----CCCCccEEEEcC
Confidence                124688888643

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=95.09  E-value=0.015  Score=42.33  Aligned_cols=34  Identities=18%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI   49 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL   49 (658)
                      .+..++.|||+++.+.+|++..+. |.+.=+++|+
T Consensus         7 ~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~   40 (40)
T 1z96_A            7 KIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence            578999999999999999999965 8888788774

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=95.07  E-value=0.024  Score=44.66  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             hhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           15 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        15 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      -+..+++||| +++.+.+|++..|. |.+.-+|+|+..
T Consensus        14 ~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~   50 (53)
T 2knz_A           14 QLEQLNSMGFINREANLQALIATGG-DINAAIERLLGS   50 (53)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHc
Confidence            4799999999 99999999999997 899999999974

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.05  E-value=0.049  Score=52.15  Aligned_cols=75  Identities=16%  Similarity=0.103  Sum_probs=52.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|.+.+.+.+.|.   .++++|+++.+.+..+.+....+.. ...++.+|+.+.-        ...+.|
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~  123 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP  123 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence            457899999999999999988865   3789999999988887765443322 2234566765421        122579


Q ss_pred             cEEEecC
Q 006172          603 DFVICQN  609 (658)
Q Consensus       603 DLVIGGp  609 (658)
                      |+|+-+.
T Consensus       124 D~v~~~~  130 (204)
T 3njr_A          124 EAVFIGG  130 (204)
T ss_dssp             SEEEECS
T ss_pred             CEEEECC
Confidence            9998554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.05  E-value=0.048  Score=51.34  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+...      +..+..+|+.++..         .+.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence            345679999999999999999999874   678999999887776643      12245677766651         257


Q ss_pred             ccEEEecC
Q 006172          602 IDFVICQN  609 (658)
Q Consensus       602 ~DLVIGGp  609 (658)
                      ||+|+...
T Consensus       103 fD~v~~~~  110 (211)
T 3e23_A          103 YDAVWAHA  110 (211)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            88888654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.03  E-value=0.045  Score=52.11  Aligned_cols=82  Identities=20%  Similarity=0.083  Sum_probs=56.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+||||.||.|.+.+.+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+     ..+.+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence            3578999999999999988876322 2478999999998887776544332233356778766431 01     125699


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+..+|..
T Consensus       114 ~i~~~~~~~  122 (214)
T 1yzh_A          114 RLYLNFSDP  122 (214)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            999887753

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=94.96  E-value=0.035  Score=56.67  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+ +|||+-||.|.++..|.+.|.   -|+++|+|+.....++.....   ....++.+|+.+++-..+       ..+|
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~-------~~~~  112 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV-------PQGS  112 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS-------CTTE
T ss_pred             CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc-------cCcc
Confidence            35 899999999999999999985   478999999999888876532   223467899988865432       2578


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+|-.|=+
T Consensus       113 ~iv~NlPy~  121 (271)
T 3fut_A          113 LLVANLPYH  121 (271)
T ss_dssp             EEEEEECSS
T ss_pred             EEEecCccc
Confidence            999988743

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=94.95  E-value=0.038  Score=58.06  Aligned_cols=81  Identities=12%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~-Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+. |.|.+.+.+.+.|.. ..++++|+++.+.+..+.+....+.....++.+|+.+ +...       ..+.|
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~f  242 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKF  242 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCB
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCc
Confidence            357899999 999999999888752 3578999999998888876654332223356788876 4311       12479


Q ss_pred             cEEEecCCCCC
Q 006172          603 DFVICQNSVPQ  613 (658)
Q Consensus       603 DLVIGGpPCQ~  613 (658)
                      |+|+..+||..
T Consensus       243 D~Vi~~~p~~~  253 (373)
T 2qm3_A          243 DTFITDPPETL  253 (373)
T ss_dssp             SEEEECCCSSH
T ss_pred             cEEEECCCCch
Confidence            99999999853

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=94.93  E-value=0.079  Score=62.25  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=72.2

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCcc
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVM   93 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~   93 (658)
                      .+++.++.||||+....||+...|..+.+.-.+.|+..-.            |.++++.-...  ..+ ....... .  
T Consensus       654 ~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmd------------d~di~~p~~~~--~~~-~~~s~~~-~--  715 (854)
T 3ihp_A          654 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD------------DPDFANPLILP--GSS-GPGSTSA-A--  715 (854)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTT------------SCGGGSCCCCC-----------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccC------------ccccccccccc--ccc-ccccccc-c--
Confidence            3789999999999999999999999999999999986432            11111111110  000 0000000 0  


Q ss_pred             ccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172           94 DEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  140 (658)
Q Consensus        94 ~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~  140 (658)
                      ..+...+.+..|..|||+.+.+.+|+++.+.+  ++.-+|.|++...
T Consensus       716 ~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~--~eraidwlfs~~d  760 (854)
T 3ihp_A          716 ADPPPEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID  760 (854)
T ss_dssp             ---CCHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCc--HHHHHHhhhcCcc
Confidence            01124567889999999999999999998764  6888999988643

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=94.92  E-value=0.018  Score=45.27  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             hhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      .+..+++||| +++.+.+|++..|. |.+.-+|+|+.
T Consensus        15 ~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~   50 (52)
T 2jy5_A           15 QLEQLSAMGFLNREANLQALIATGG-DINAAIERLLG   50 (52)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence            6799999999 99999999999987 89999999975

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=94.90  E-value=0.02  Score=48.09  Aligned_cols=36  Identities=11%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      .+..++.|||+++.+.+|++..|. |.+.=+|+|+..
T Consensus        32 ~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~   67 (73)
T 1wiv_A           32 SVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNN   67 (73)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence            679999999999999999999986 999999999974

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=94.89  E-value=0.024  Score=55.40  Aligned_cols=77  Identities=18%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006172          516 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  595 (658)
Q Consensus       516 svLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l  595 (658)
                      ..|....+.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+....     ...++.+|+.++..      
T Consensus        42 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------  107 (263)
T 3pfg_A           42 ALVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL------  107 (263)
T ss_dssp             HHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC------
T ss_pred             HHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc------
Confidence            334445567789999999999999999999864   6889999998877765422     23356778776542      


Q ss_pred             hhccCCccEEEecC
Q 006172          596 IHKLGSIDFVICQN  609 (658)
Q Consensus       596 ~~~~g~~DLVIGGp  609 (658)
                         .+.||+|+...
T Consensus       108 ---~~~fD~v~~~~  118 (263)
T 3pfg_A          108 ---GRRFSAVTCMF  118 (263)
T ss_dssp             ---SCCEEEEEECT
T ss_pred             ---cCCcCEEEEcC
Confidence               24788888654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.79  E-value=0.055  Score=52.59  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+.||.|++...+.+. |-. ..++++|+++...+..+.+....+... ..+..+|+.+.-         ..+.
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  162 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---------EEEN  162 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---------CCCS
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---------CCCC
Confidence            4578999999999999999887 411 247899999998887777654433222 234566765331         1246


Q ss_pred             ccEEEecCCCC
Q 006172          602 IDFVICQNSVP  612 (658)
Q Consensus       602 ~DLVIGGpPCQ  612 (658)
                      +|+|+..+|+.
T Consensus       163 ~D~v~~~~~~~  173 (255)
T 3mb5_A          163 VDHVILDLPQP  173 (255)
T ss_dssp             EEEEEECSSCG
T ss_pred             cCEEEECCCCH
Confidence            99999877765

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=94.79  E-value=0.042  Score=54.48  Aligned_cols=76  Identities=16%  Similarity=0.007  Sum_probs=53.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+.||.|.++..|.+.|.   -++++|+|+......+.....  .....++.+|+.++....       ...+ 
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-------~~~~-   96 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-------NQSY-   96 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-------SCCC-
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-------CCCe-
Confidence            457899999999999999998884   478999999998888775532  122345678887765311       1234 


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      .|++.+|=+
T Consensus        97 ~vv~nlPy~  105 (244)
T 1qam_A           97 KIFGNIPYN  105 (244)
T ss_dssp             EEEEECCGG
T ss_pred             EEEEeCCcc
Confidence            577777643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=94.78  E-value=0.039  Score=51.48  Aligned_cols=73  Identities=16%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+ +|||+-||.|.+...|.+.|.+   ++++|+++.+....+......+. ...+...|+.++..        ..+.|
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f   95 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW   95 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence            445 9999999999999999999874   68899999988877765543221 22345667765531        12468


Q ss_pred             cEEEec
Q 006172          603 DFVICQ  608 (658)
Q Consensus       603 DLVIGG  608 (658)
                      |+|+..
T Consensus        96 D~v~~~  101 (202)
T 2kw5_A           96 EGIVSI  101 (202)
T ss_dssp             SEEEEE
T ss_pred             cEEEEE
Confidence            999864

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=94.77  E-value=0.047  Score=51.89  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+......+. ...+..+|+.++..         .+.|
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~f  102 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---------NRKF  102 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---------SCCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc---------cCCc
Confidence            45679999999999999999999864   78899999988877765543321 23345677766542         1579


Q ss_pred             cEEEecC
Q 006172          603 DFVICQN  609 (658)
Q Consensus       603 DLVIGGp  609 (658)
                      |+|+...
T Consensus       103 D~v~~~~  109 (246)
T 1y8c_A          103 DLITCCL  109 (246)
T ss_dssp             EEEEECT
T ss_pred             eEEEEcC
Confidence            9998643

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=94.70  E-value=0.058  Score=55.88  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||++||.||.+..+-+.+=. ..++++|+|+.+....+.+....+ ....++.+|..++.. .+..+  ..+.||
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D  100 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD  100 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence            3468999999999999988775211 247899999999988877654322 222355677665531 11110  124799


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      .|+--+||..
T Consensus       101 ~Vl~D~gvSs  110 (301)
T 1m6y_A          101 GILMDLGVST  110 (301)
T ss_dssp             EEEEECSCCH
T ss_pred             EEEEcCccch
Confidence            9999888853

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=94.70  E-value=0.012  Score=65.42  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      ..+++|||+=||.|-++..|.++|..   |.+||.++.+..+-+.+-...   |.+  .-+.+..+.+++... ...+.|
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~---~~~--~~~~~~~~~~~~~~~-~~~~~f  135 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEEN---PDF--AAEFRVGRIEEVIAA-LEEGEF  135 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTS---TTS--EEEEEECCHHHHHHH-CCTTSC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhc---CCC--ceEEEECCHHHHhhh-ccCCCc
Confidence            35689999999999999999999985   789999999988877654332   211  112222333333110 123579


Q ss_pred             cEEEec
Q 006172          603 DFVICQ  608 (658)
Q Consensus       603 DLVIGG  608 (658)
                      |+|++-
T Consensus       136 D~v~~~  141 (569)
T 4azs_A          136 DLAIGL  141 (569)
T ss_dssp             SEEEEE
T ss_pred             cEEEEC
Confidence            999864

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.68  E-value=0.029  Score=48.45  Aligned_cols=40  Identities=13%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+++..|+.|||+++.|.+|+..++-+  ++.=+++|+.+.
T Consensus        21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~   60 (85)
T 2dkl_A           21 MSRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK   60 (85)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence            4788999999999999999999666654  588899998764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=94.61  E-value=0.054  Score=49.22  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|.+...+.+.+   ..++++|+++.+.+..+.+....+. ....+..+|+.+        .....+.+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~  101 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI  101 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence            45789999999999999999888   3578999999988887776543321 111233444432        11122579


Q ss_pred             cEEEecCCCCC
Q 006172          603 DFVICQNSVPQ  613 (658)
Q Consensus       603 DLVIGGpPCQ~  613 (658)
                      |+|+...+...
T Consensus       102 D~v~~~~~~~~  112 (192)
T 1l3i_A          102 DIAVVGGSGGE  112 (192)
T ss_dssp             EEEEESCCTTC
T ss_pred             CEEEECCchHH
Confidence            99998776543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=94.61  E-value=0.074  Score=50.75  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...+...|.   .++++|+++......+......+  ...+..+|+.+.-.        ..+.||
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD  136 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD  136 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence            457899999999999999999883   47899999999888777653321  22345667654211        125799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+...++..+.
T Consensus       137 ~v~~~~~~~~~~  148 (231)
T 1vbf_A          137 RVVVWATAPTLL  148 (231)
T ss_dssp             EEEESSBBSSCC
T ss_pred             EEEECCcHHHHH
Confidence            999887776553

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=94.55  E-value=0.045  Score=53.01  Aligned_cols=73  Identities=19%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.|..  .++++|+++......+....   .....++.+|+.++..        ..+.||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence            5689999999999999999999873  57899999998877765432   1223356677766542        125788


Q ss_pred             EEEecC
Q 006172          604 FVICQN  609 (658)
Q Consensus       604 LVIGGp  609 (658)
                      +|+...
T Consensus       111 ~v~~~~  116 (253)
T 3g5l_A          111 VVLSSL  116 (253)
T ss_dssp             EEEEES
T ss_pred             EEEEch
Confidence            888754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=94.55  E-value=0.046  Score=52.18  Aligned_cols=77  Identities=21%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-hHHHhhh--c
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-KFESLIH--K  598 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~-~Ie~l~~--~  598 (658)
                      ++.+.+||||-||.||++..+.+.+-   .|++||+++..           ...+..++.+||++.... .+.....  .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            34578999999999999999887754   47899999852           123445678999876532 2222221  0


Q ss_pred             cCCccEEEecCCCC
Q 006172          599 LGSIDFVICQNSVP  612 (658)
Q Consensus       599 ~g~~DLVIGGpPCQ  612 (658)
                      .+.||+|+.-.|++
T Consensus        89 ~~~~D~Vlsd~~~~  102 (191)
T 3dou_A           89 IEKVDDVVSDAMAK  102 (191)
T ss_dssp             CSSEEEEEECCCCC
T ss_pred             CCcceEEecCCCcC
Confidence            14899999877654

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.54  E-value=0.023  Score=49.12  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=32.4

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      .+.+|+.|||+++.|.+|+ ..+..|.+.=+|+|+..
T Consensus        24 ~I~qL~~MGF~~~~a~~AL-~~~n~n~e~A~ewL~~h   59 (85)
T 2dkl_A           24 LIKQLTDMGFPREPAEEAL-KSNNMNLDQAMSALLEK   59 (85)
T ss_dssp             HHHHHHHHTCCHHHHHHHH-HHTTSCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHH-HHcCCCHHHHHHHHHHC
Confidence            7899999999999999999 56667999999999974

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.51  E-value=0.052  Score=43.14  Aligned_cols=40  Identities=18%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   53 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a   53 (658)
                      +--|.++|+|||+++-|.+|++.-.. |.+.--.+|+.+..
T Consensus        10 e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~   49 (53)
T 2d9s_A           10 SSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG   49 (53)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence            34589999999999999999998766 88888888887643

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=94.48  E-value=0.043  Score=64.36  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=59.4

Q ss_pred             hhhhcccchhhhccc-----ccccCCCCCcccccCCCCChHHHHHHHcC--CceeeEEEeeCCHHHHHHH--HHHhhh--
Q 006172          503 RHCFQTDTLGYHLSV-----LKSMFPGGLTMLSVFSGIGGAEVTLHRLG--IKLKGVISIETSETNRRIL--KRWWES--  571 (658)
Q Consensus       503 gnsfqvdti~~~lsv-----LK~~f~~~l~vLdLFSGiGGlslGL~~aG--i~~k~vvavEid~~a~~t~--k~~~~~--  571 (658)
                      |..+....++..+.-     +.+..+.+.+|+|.+||.|++-+++.+..  ..-..++++||++.+.+..  +.+...  
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            444444444444322     23334567899999999999998876532  2123578999999987776  332211  


Q ss_pred             --cCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 006172          572 --SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       572 --~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  612 (658)
                        ++.....+...|......       ...+.||+|||=||=-
T Consensus       375 LlhGi~~~~I~~dD~L~~~~-------~~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNP-------EDFANVSVVVMNPPYV  410 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCG-------GGGTTEEEEEECCBCC
T ss_pred             hhcCCCcceEEecchhcccc-------cccCCCCEEEECCCcc
Confidence              000011122334333221       1236799999999863

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.48  E-value=0.029  Score=48.25  Aligned_cols=37  Identities=24%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      .+.+++.|||+++.+.+|+...+ .|.+.=+|+|+...
T Consensus        32 ~i~~L~~MGF~~~~a~~AL~~t~-~nve~A~ewL~~~~   68 (83)
T 2dai_A           32 ALRQLTEMGFPENRATKALQLNH-MSVPQAMEWLIEHA   68 (83)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHHGG
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhC-CCHHHHHHHHHHCC
Confidence            67999999999999999999984 59999999999854

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=94.45  E-value=0.075  Score=52.07  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      .+.+.+|||+-||.|.+...+.+.+.  ..++++|+++......+......+... ..++.+|+.++..        ..+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~  113 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--------RNE  113 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--------CCC
Confidence            34568999999999999999988853  247899999998887776654332211 3356778776642        125


Q ss_pred             CccEEEecCCCCCc
Q 006172          601 SIDFVICQNSVPQI  614 (658)
Q Consensus       601 ~~DLVIGGpPCQ~F  614 (658)
                      .||+|+...+...+
T Consensus       114 ~fD~i~~~~~~~~~  127 (267)
T 3kkz_A          114 ELDLIWSEGAIYNI  127 (267)
T ss_dssp             CEEEEEESSCGGGT
T ss_pred             CEEEEEEcCCceec
Confidence            79999977665443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=94.44  E-value=0.079  Score=51.11  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=51.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++......+......+ ....++.+|+.++..         .+.+|
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~~~fD  107 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERN-LKIEFLQGDVLEIAF---------KNEFD  107 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-CCCEEEESCGGGCCC---------CSCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcC-CceEEEECChhhccc---------CCCcc
Confidence            4578999999999999999999874   6889999998888776654332 123345677766532         13577


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus       108 ~v~~  111 (252)
T 1wzn_A          108 AVTM  111 (252)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.38  E-value=0.05  Score=57.69  Aligned_cols=77  Identities=13%  Similarity=0.044  Sum_probs=52.9

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC---CCccccccccccChhhHHHhhhccCCc
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT---GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~---g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+||||+||.|.+.+.+.+.+-. ..++++|+++.+.+..+.+....+..   ...+..+|+.+.-         ..+.|
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~f  293 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFRF  293 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTCE
T ss_pred             CeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCCe
Confidence            68999999999999999988411 24789999999988888766543211   0112445554311         12579


Q ss_pred             cEEEecCCCC
Q 006172          603 DFVICQNSVP  612 (658)
Q Consensus       603 DLVIGGpPCQ  612 (658)
                      |+|+..||..
T Consensus       294 D~Ii~nppfh  303 (375)
T 4dcm_A          294 NAVLCNPPFH  303 (375)
T ss_dssp             EEEEECCCC-
T ss_pred             eEEEECCCcc
Confidence            9999999864

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=94.38  E-value=0.058  Score=50.44  Aligned_cols=80  Identities=20%  Similarity=0.075  Sum_probs=53.4

Q ss_pred             hhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh
Q 006172          512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK  591 (658)
Q Consensus       512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~  591 (658)
                      ...+..+.. .+.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+.    .+.....++.+|+.++.   
T Consensus        35 ~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~---  103 (218)
T 3ou2_A           35 PAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT---  103 (218)
T ss_dssp             HHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC---
T ss_pred             HHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC---
Confidence            334444443 334569999999999999999998864   6789999998776654    11122335567776551   


Q ss_pred             HHHhhhccCCccEEEec
Q 006172          592 FESLIHKLGSIDFVICQ  608 (658)
Q Consensus       592 Ie~l~~~~g~~DLVIGG  608 (658)
                            ..+.||+|+..
T Consensus       104 ------~~~~~D~v~~~  114 (218)
T 3ou2_A          104 ------PDRQWDAVFFA  114 (218)
T ss_dssp             ------CSSCEEEEEEE
T ss_pred             ------CCCceeEEEEe
Confidence                  12467887754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=94.37  E-value=0.081  Score=50.94  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=58.6

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      ...+.+.+|||+-||.|.+...|.+.|.   .++++|+++.+....+....   .....++.+|+.++....-  + ...
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~--~-~~~  122 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ--I-HSE  122 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH--H-HHH
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc--c-ccc
Confidence            3345678899999999999999999886   36899999998887776432   2233456778876643211  0 011


Q ss_pred             CCccEEEecCCCCCc
Q 006172          600 GSIDFVICQNSVPQI  614 (658)
Q Consensus       600 g~~DLVIGGpPCQ~F  614 (658)
                      ..+|+|+......-+
T Consensus       123 ~~~d~v~~~~~~~~~  137 (245)
T 3ggd_A          123 IGDANIYMRTGFHHI  137 (245)
T ss_dssp             HCSCEEEEESSSTTS
T ss_pred             cCccEEEEcchhhcC
Confidence            248999877655443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.32  E-value=0.022  Score=55.72  Aligned_cols=45  Identities=20%  Similarity=0.216  Sum_probs=35.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      .+.+|||++||.|.+.+.+.+.  + .-..++++|+++.+.+..+.+.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~   97 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNL   97 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHH
Confidence            4578999999999999988765  2 1235789999999988777543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=94.25  E-value=0.13  Score=49.69  Aligned_cols=81  Identities=10%  Similarity=0.078  Sum_probs=57.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+.+|||+-||.|.+...+.+.+-.  .++++|+++......+......+... ..++.+|+.++..        ..+.
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  114 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--------QNEE  114 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--------CTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--------CCCC
Confidence            34579999999999999999888742  57899999998888777654433222 3356678766642        1257


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+.......
T Consensus       115 fD~v~~~~~l~~  126 (257)
T 3f4k_A          115 LDLIWSEGAIYN  126 (257)
T ss_dssp             EEEEEEESCSCC
T ss_pred             EEEEEecChHhh
Confidence            999987754443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.16  E-value=0.056  Score=54.57  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=57.6

Q ss_pred             hhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc-------CCCCCcccccc
Q 006172          511 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIED  583 (658)
Q Consensus       511 i~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~-------n~~g~l~~~~D  583 (658)
                      +...+..++...+.+.+|||+-||.|++...+.+.+.  .-++++|+++...+..+......       +.....++.+|
T Consensus        21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D   98 (313)
T 3bgv_A           21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD   98 (313)
T ss_dssp             HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred             HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence            3334444554445678999999999999998887653  35789999999887776654322       11122345677


Q ss_pred             ccccChhhHHHhhhccCCccEEEecC
Q 006172          584 IQALTTKKFESLIHKLGSIDFVICQN  609 (658)
Q Consensus       584 I~~Lt~~~Ie~l~~~~g~~DLVIGGp  609 (658)
                      +.++....  .+....+.||+|+...
T Consensus        99 ~~~~~~~~--~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A           99 SSKELLID--KFRDPQMCFDICSCQF  122 (313)
T ss_dssp             TTTSCSTT--TCSSTTCCEEEEEEET
T ss_pred             ccccchhh--hcccCCCCEEEEEEec
Confidence            77653100  0000124688888654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=94.15  E-value=0.082  Score=52.49  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+.||.|.+.+.+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.+.-         ..+.
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  181 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD  181 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence            4578999999999999998877 421 2478999999998888776543321 11223455665431         1146


Q ss_pred             ccEEEecCCCC
Q 006172          602 IDFVICQNSVP  612 (658)
Q Consensus       602 ~DLVIGGpPCQ  612 (658)
                      ||+|+..+|+.
T Consensus       182 ~D~V~~~~~~~  192 (277)
T 1o54_A          182 VDALFLDVPDP  192 (277)
T ss_dssp             EEEEEECCSCG
T ss_pred             cCEEEECCcCH
Confidence            99999888765

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=94.15  E-value=0.083  Score=41.83  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172          100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus       100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      +.+..|++|||+.++|.+|+...+.+  ++.-..+|+
T Consensus        13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nn--ve~AaniLl   47 (52)
T 2ooa_A           13 AKIAKLMGEGYAFEEVKRALEIAQNN--VEVARSILR   47 (52)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            57999999999999999999998776  344444444

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=94.10  E-value=0.082  Score=50.26  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|||+-||.|+....|.++   |.   .++++|+++......+.++...+... ..++.+|+.+.    +..+....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~  130 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK  130 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence            3578999999999999999887   54   47899999998888887776543322 23455666432    22222122


Q ss_pred             -CCccEEEecCCCCCc
Q 006172          600 -GSIDFVICQNSVPQI  614 (658)
Q Consensus       600 -g~~DLVIGGpPCQ~F  614 (658)
                       +.||+|+-..+|..+
T Consensus       131 ~~~fD~v~~d~~~~~~  146 (223)
T 3duw_A          131 YEPFDFIFIDADKQNN  146 (223)
T ss_dssp             CCCCSEEEECSCGGGH
T ss_pred             CCCcCEEEEcCCcHHH
Confidence             569999987776643

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=94.10  E-value=0.055  Score=55.00  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=33.8

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      .+|||+|||.|..++-|-..|.+   |++||+++.....++.+.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l  130 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGL  130 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHH
Confidence            78999999999999988888864   789999998665555443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=94.10  E-value=0.038  Score=55.72  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCH-------HHHHHHHHHhhhcCCCC-CccccccccccChhhHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL  595 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~-------~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l  595 (658)
                      .+.+|||++||.|.+++.|-+.|.+   |+++|+++       .+.+..+.+....+... ..++.+|+.++.    ..+
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~  155 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL  155 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence            4578999999999999999988864   68999999       66655544322111001 223445554321    111


Q ss_pred             hhccCCccEEEecCCC
Q 006172          596 IHKLGSIDFVICQNSV  611 (658)
Q Consensus       596 ~~~~g~~DLVIGGpPC  611 (658)
                      ....+.||+|+--||=
T Consensus       156 ~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             hccCCCccEEEECCCC
Confidence            1101479999987653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.05  E-value=0.094  Score=53.58  Aligned_cols=84  Identities=21%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|++...+.+.+-+-..++++|+++...+..+.+....+.....+..+|+.+...        ..+.||
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  146 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD  146 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence            457999999999999988887764212378999999988877776544322223345667665322        125799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+...++..+.
T Consensus       147 ~Iv~~~~~~~~~  158 (317)
T 1dl5_A          147 VIFVTVGVDEVP  158 (317)
T ss_dssp             EEEECSBBSCCC
T ss_pred             EEEEcCCHHHHH
Confidence            999888876553

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.05  E-value=0.049  Score=43.40  Aligned_cols=39  Identities=13%  Similarity=0.181  Sum_probs=33.7

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      .+-++.|+.|||+++.|.+|+++-|... |+.-+|+|..-
T Consensus        10 ~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k~   48 (54)
T 2cos_A           10 RQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISKM   48 (54)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHHh
Confidence            4458999999999999999999999865 68889988754

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=94.00  E-value=0.082  Score=49.77  Aligned_cols=79  Identities=18%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+.++..        ..+.|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f  107 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV  107 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence            3567999999999999999988762212478999999988887776544332233356677766541        12468


Q ss_pred             cEEEecC
Q 006172          603 DFVICQN  609 (658)
Q Consensus       603 DLVIGGp  609 (658)
                      |+|+...
T Consensus       108 D~v~~~~  114 (219)
T 3dh0_A          108 DFIFMAF  114 (219)
T ss_dssp             EEEEEES
T ss_pred             eEEEeeh
Confidence            9998654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=93.97  E-value=0.077  Score=52.51  Aligned_cols=79  Identities=18%  Similarity=0.145  Sum_probs=55.2

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      -+.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+......+. ....++.+|+.++..     +  ..+
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~  135 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-----H--LET  135 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-----G--CSS
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-----h--cCC
Confidence            345689999999999999999999874   68899999988877765443221 122245677765542     0  125


Q ss_pred             CccEEEecCC
Q 006172          601 SIDFVICQNS  610 (658)
Q Consensus       601 ~~DLVIGGpP  610 (658)
                      .||+|+....
T Consensus       136 ~fD~v~~~~~  145 (285)
T 4htf_A          136 PVDLILFHAV  145 (285)
T ss_dssp             CEEEEEEESC
T ss_pred             CceEEEECch
Confidence            7999997543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=93.96  E-value=0.1  Score=56.09  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcC------------CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  589 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aG------------i~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~  589 (658)
                      .+.+|+|..||.||+.+.+.+.-            +....++++|+++.+.++.+.+...++..  ...+..+|......
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            35789999999999988776420            01124789999999888777654333221  22345566543321


Q ss_pred             hhHHHhhhccCCccEEEecCCCCCcc
Q 006172          590 KKFESLIHKLGSIDFVICQNSVPQIP  615 (658)
Q Consensus       590 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS  615 (658)
                               .+.||+|++-||.....
T Consensus       251 ---------~~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          251 ---------STLVDVILANPPFGTRP  267 (445)
T ss_dssp             ---------SSCEEEEEECCCSSCCC
T ss_pred             ---------cCCcCEEEECCCCCCcc
Confidence                     24799999999987654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.93  E-value=0.12  Score=49.54  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=52.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++...+..+.+....+. ....+..+|+.+...        ..+.+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~  159 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF  159 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence            457899999999999998888754   478999999988887776543321 122234566654320        11479


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+..+|
T Consensus       160 D~v~~~~~  167 (248)
T 2yvl_A          160 HAAFVDVR  167 (248)
T ss_dssp             SEEEECSS
T ss_pred             cEEEECCc
Confidence            99998665

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=93.89  E-value=0.09  Score=49.16  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             CCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+|||+-||.|.+...+...  +.   .++++|+++.+....+.+....+.....+..+|+.++..         .+.|
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~  133 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF  133 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence            468999999999999888876  43   478999999998888776544332223345667765431         2479


Q ss_pred             cEEEe
Q 006172          603 DFVIC  607 (658)
Q Consensus       603 DLVIG  607 (658)
                      |+|+.
T Consensus       134 D~i~~  138 (207)
T 1jsx_A          134 DGVIS  138 (207)
T ss_dssp             EEEEC
T ss_pred             CEEEE
Confidence            99984

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=93.89  E-value=0.077  Score=42.74  Aligned_cols=41  Identities=20%  Similarity=0.095  Sum_probs=34.0

Q ss_pred             chhHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           96 GLHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        96 s~~~~~~~~lv~MGF~-eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      +.+.+++..|+.|||+ ++.+.+|+.+++-+  ++.-+|+|+..
T Consensus        15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~   56 (58)
T 1wr1_B           15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG   56 (58)
T ss_dssp             HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            4467899999999996 66789999998865  57889999864

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=93.86  E-value=0.16  Score=48.71  Aligned_cols=82  Identities=17%  Similarity=0.073  Sum_probs=54.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+.+.+.+..-. ..++++|+++.+....+.+....+.....++.+|+.++.     ..+ ..+.+|
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~~d  110 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGEVK  110 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTSCC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCCcC
Confidence            4578999999999999998876211 247899999998887776544333223335667776532     111 125689


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      .|+-.+|+.
T Consensus       111 ~v~~~~~~p  119 (213)
T 2fca_A          111 RVYLNFSDP  119 (213)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            888777654

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.83  E-value=0.074  Score=42.16  Aligned_cols=39  Identities=26%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             hHHHHHHHHhcCCChHH-HHHHHHHhCCCCchHHHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNE-VDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eee-v~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      +.+++..|+.|||+.+. +.+|+.+++-+  ++.-+|+|+..
T Consensus         9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~   48 (54)
T 2dah_A            9 FQVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQS   48 (54)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            56789999999997765 69999998865  68889999976

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=93.82  E-value=0.12  Score=51.55  Aligned_cols=76  Identities=17%  Similarity=0.075  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~-n~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      ..+.+|||+.||.|++...+.+.   +.   .++++|+++...+..+.+.... +.....+..+|+.+.-         .
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---------~  176 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------S  176 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------C
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---------c
Confidence            34578999999999999998876   44   4789999999888877765432 2122234556665421         1


Q ss_pred             cCCccEEEecCC
Q 006172          599 LGSIDFVICQNS  610 (658)
Q Consensus       599 ~g~~DLVIGGpP  610 (658)
                      .+.||+|+...|
T Consensus       177 ~~~fD~Vi~~~~  188 (275)
T 1yb2_A          177 DQMYDAVIADIP  188 (275)
T ss_dssp             SCCEEEEEECCS
T ss_pred             CCCccEEEEcCc
Confidence            146999998555

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.80  E-value=0.076  Score=54.09  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=38.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  571 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  571 (658)
                      .+-+|||+|||.|...+++.++|.+   +++||+++.+..+.+..+..
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence            4567999999999999999999964   68999999988877765543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=93.77  E-value=0.14  Score=50.24  Aligned_cols=83  Identities=20%  Similarity=0.228  Sum_probs=57.3

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++..        ..+.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence            356789999999999999999888421 2478999999988777766544322233345677766542        1257


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+.......
T Consensus       106 fD~v~~~~~l~~  117 (276)
T 3mgg_A          106 FDHIFVCFVLEH  117 (276)
T ss_dssp             EEEEEEESCGGG
T ss_pred             eeEEEEechhhh
Confidence            999997654443

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=93.73  E-value=0.11  Score=39.86  Aligned_cols=39  Identities=21%  Similarity=0.102  Sum_probs=31.7

Q ss_pred             hhHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172           97 LHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA  137 (658)
Q Consensus        97 ~~~~~~~~lv~MGF~-eeev~~Ai~~~G~d~~i~~L~d~I~a  137 (658)
                      .+.+++..|+.|||+ ++.+..|+..++-+  ++.-+|+|+.
T Consensus         6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~   45 (46)
T 2bwb_A            6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN   45 (46)
T ss_dssp             HTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence            467789999999996 56689999998865  5777888874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=93.72  E-value=0.14  Score=49.49  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~-n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+.||.|.+...+.+. |-. ..++++|+++...+..+.+.... +.....+..+|+.+..   +     ..+.
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~-----~~~~  166 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---L-----EEAA  166 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---C-----CTTC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---C-----CCCC
Confidence            4578999999999999999887 411 24789999999888887765433 2122234566776552   1     1146


Q ss_pred             ccEEEecCCCC
Q 006172          602 IDFVICQNSVP  612 (658)
Q Consensus       602 ~DLVIGGpPCQ  612 (658)
                      +|+|+..+|+.
T Consensus       167 ~D~v~~~~~~~  177 (258)
T 2pwy_A          167 YDGVALDLMEP  177 (258)
T ss_dssp             EEEEEEESSCG
T ss_pred             cCEEEECCcCH
Confidence            99999876654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=93.71  E-value=0.095  Score=49.98  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             CCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+.+|||+-||.|.+...+.+.  |.   -++++|+++......+.......  ...++.+|+.++...         
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------  107 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------  107 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------
Confidence            345689999999999999999888  54   46889999998887776543221  233556777766431         


Q ss_pred             CCccEEEecCCCCCc
Q 006172          600 GSIDFVICQNSVPQI  614 (658)
Q Consensus       600 g~~DLVIGGpPCQ~F  614 (658)
                      +.||+|+......-+
T Consensus       108 ~~fD~v~~~~~l~~~  122 (234)
T 3dtn_A          108 EKYDMVVSALSIHHL  122 (234)
T ss_dssp             SCEEEEEEESCGGGS
T ss_pred             CCceEEEEeCccccC
Confidence            579999987654443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=93.71  E-value=0.068  Score=51.25  Aligned_cols=76  Identities=16%  Similarity=0.010  Sum_probs=52.5

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCccE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      .+|||+-||.|.+...|.+.|.+   ++++|+++.+....+......+. ....+..+|+.++...         +.||+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~  135 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL  135 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence            49999999999999999887753   78999999988877765432111 1122456777665421         36899


Q ss_pred             EEecCCCCC
Q 006172          605 VICQNSVPQ  613 (658)
Q Consensus       605 VIGGpPCQ~  613 (658)
                      |+.......
T Consensus       136 v~~~~~l~~  144 (235)
T 3lcc_A          136 IFDYVFFCA  144 (235)
T ss_dssp             EEEESSTTT
T ss_pred             EEEChhhhc
Confidence            887554433

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=93.61  E-value=0.12  Score=52.15  Aligned_cols=84  Identities=15%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             hhcccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChh
Q 006172          513 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTK  590 (658)
Q Consensus       513 ~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~  590 (658)
                      ..+..|.. .+.+.+|||+.||.|.+...|.+. |.+   ++++|+++......+.+....+.. ...++.+|+.++.- 
T Consensus       107 ~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  181 (312)
T 3vc1_A          107 FLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF-  181 (312)
T ss_dssp             HHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-
T ss_pred             HHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC-
Confidence            34444432 245678999999999999998877 754   689999999888777665443222 23356778776541 


Q ss_pred             hHHHhhhccCCccEEEec
Q 006172          591 KFESLIHKLGSIDFVICQ  608 (658)
Q Consensus       591 ~Ie~l~~~~g~~DLVIGG  608 (658)
                             ..+.||+|+..
T Consensus       182 -------~~~~fD~V~~~  192 (312)
T 3vc1_A          182 -------DKGAVTASWNN  192 (312)
T ss_dssp             -------CTTCEEEEEEE
T ss_pred             -------CCCCEeEEEEC
Confidence                   12578988853

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=93.60  E-value=0.02  Score=44.11  Aligned_cols=38  Identities=18%  Similarity=0.082  Sum_probs=30.5

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  137 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a  137 (658)
                      ..+.+..|+.|||++..|.+|+..||-+  .+.=+++|++
T Consensus         4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~   41 (47)
T 1dv0_A            4 EKEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLS   41 (47)
T ss_dssp             CHHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTS
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence            3457899999999999999999999954  3555666653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=93.56  E-value=0.11  Score=50.17  Aligned_cols=79  Identities=13%  Similarity=0.204  Sum_probs=55.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+-||.|.+...+...|.   .++++|+++......+......+.....++.+|+.++..        ..+.|
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f   88 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSF   88 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcE
Confidence            3567899999999999999988875   478999999988777765543322233355677765541        12579


Q ss_pred             cEEEecCCCC
Q 006172          603 DFVICQNSVP  612 (658)
Q Consensus       603 DLVIGGpPCQ  612 (658)
                      |+|+......
T Consensus        89 D~v~~~~~l~   98 (239)
T 1xxl_A           89 DIITCRYAAH   98 (239)
T ss_dssp             EEEEEESCGG
T ss_pred             EEEEECCchh
Confidence            9999765443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=93.56  E-value=0.08  Score=50.16  Aligned_cols=81  Identities=12%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             hhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh
Q 006172          512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK  591 (658)
Q Consensus       512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~  591 (658)
                      .+.+..+.... .+.+|||+=||.|.+...|.+.|.+   ++++|+++......+..+..    ...++.+|+.++..  
T Consensus        31 ~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~--  100 (250)
T 2p7i_A           31 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL--  100 (250)
T ss_dssp             HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC--
T ss_pred             HHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc--
Confidence            33444454443 4568999999999999999988864   68899999988777765421    22345667665521  


Q ss_pred             HHHhhhccCCccEEEecC
Q 006172          592 FESLIHKLGSIDFVICQN  609 (658)
Q Consensus       592 Ie~l~~~~g~~DLVIGGp  609 (658)
                             .+.||+|+...
T Consensus       101 -------~~~fD~v~~~~  111 (250)
T 2p7i_A          101 -------PRRYDNIVLTH  111 (250)
T ss_dssp             -------SSCEEEEEEES
T ss_pred             -------CCcccEEEEhh
Confidence                   14577777543

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=93.56  E-value=0.03  Score=43.17  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      .|..++.|||++..|.+|+...| .|.+.=++.|++
T Consensus         7 aI~rL~~mGF~~~~a~~Al~a~~-~n~e~A~~~Lf~   41 (47)
T 1dv0_A            7 AIERLKALGFPESLVIQAYFACE-KNENLAANFLLS   41 (47)
T ss_dssp             HHTTTTTTTCCHHHHHHHHTTTT-SCHHHHHHHTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence            57999999999999999999999 699988999874

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=93.55  E-value=0.13  Score=49.63  Aligned_cols=77  Identities=16%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+... ........+..+|+.++..        ..+.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYR---YIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCE---EEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence            345689999999999999999988853   788999999888777654 1112233355677765531        1246


Q ss_pred             ccEEEecCC
Q 006172          602 IDFVICQNS  610 (658)
Q Consensus       602 ~DLVIGGpP  610 (658)
                      ||+|+....
T Consensus       105 fD~v~~~~~  113 (263)
T 2yqz_A          105 VHGVIVVHL  113 (263)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEEECCc
Confidence            999987654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=93.51  E-value=0.13  Score=49.04  Aligned_cols=75  Identities=20%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc------------CCCCCccccccccccChh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK  590 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~------------n~~g~l~~~~DI~~Lt~~  590 (658)
                      +.+.+|||+=||.|....-|.+.|++   |++||+++.+.+..+......            ......++.+|+.++...
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            45679999999999999999999974   789999999988776532110            012334567888887643


Q ss_pred             hHHHhhhccCCccEEEe
Q 006172          591 KFESLIHKLGSIDFVIC  607 (658)
Q Consensus       591 ~Ie~l~~~~g~~DLVIG  607 (658)
                      ..       +.||+|+.
T Consensus        98 ~~-------~~fD~v~~  107 (203)
T 1pjz_A           98 DI-------GHCAAFYD  107 (203)
T ss_dssp             HH-------HSEEEEEE
T ss_pred             cC-------CCEEEEEE
Confidence            21       36899885

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=93.47  E-value=0.11  Score=48.29  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=51.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +.+|||+-||.|.+...|.+.|.+   ++++|+++......+...     ....++.+|+.++..        ..+.||+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~  105 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG  105 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence            578999999999999999999874   688999999877766532     233456777766531        1257999


Q ss_pred             EEecC
Q 006172          605 VICQN  609 (658)
Q Consensus       605 VIGGp  609 (658)
                      |+...
T Consensus       106 v~~~~  110 (203)
T 3h2b_A          106 LLAWY  110 (203)
T ss_dssp             EEEES
T ss_pred             EEehh
Confidence            98754

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.41  E-value=0.12  Score=41.09  Aligned_cols=35  Identities=11%  Similarity=0.164  Sum_probs=28.0

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172          100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus       100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      ..+..|++|||+.++|.+|+...+.+  ++.-.+.|+
T Consensus        11 ~~I~~L~~lGF~r~~ai~AL~~a~nn--ve~Aa~iL~   45 (53)
T 2d9s_A           11 SEIERLMSQGYSYQDIQKALVIAHNN--IEMAKNILR   45 (53)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCC--HHHHHHHHH
Confidence            45999999999999999999998776  445444444

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=93.39  E-value=0.23  Score=49.92  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeC-CHHHHHHHHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW  569 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEi-d~~a~~t~k~~~  569 (658)
                      .+.+||||.||.|.+++.+.+.|.  ..|+++|+ ++.+....+.+.
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence            456899999999999999999985  35789999 899988887765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=93.31  E-value=0.11  Score=51.78  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=52.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh-----------------cCCCCCccccccccc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA  586 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~-----------------~n~~g~l~~~~DI~~  586 (658)
                      .+.+|||+=||.|....-|.+.|++   |++||+++.+.+..+.....                 .......++.+|+.+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4578999999999999999999985   78999999998876543210                 001122355678876


Q ss_pred             cChhhHHHhhhccCCccEEEe
Q 006172          587 LTTKKFESLIHKLGSIDFVIC  607 (658)
Q Consensus       587 Lt~~~Ie~l~~~~g~~DLVIG  607 (658)
                      +....       .+.||+|+.
T Consensus       145 l~~~~-------~~~FD~V~~  158 (252)
T 2gb4_A          145 LPRAN-------IGKFDRIWD  158 (252)
T ss_dssp             GGGGC-------CCCEEEEEE
T ss_pred             CCccc-------CCCEEEEEE
Confidence            65321       257999984

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=93.31  E-value=0.072  Score=50.19  Aligned_cols=72  Identities=11%  Similarity=-0.016  Sum_probs=53.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.|.   .++++|+++.+....+......  ....++.+|+.++..         .+.||
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD  116 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD  116 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence            457899999999999999998874   4789999999888877654321  123356778776652         25799


Q ss_pred             EEEecC
Q 006172          604 FVICQN  609 (658)
Q Consensus       604 LVIGGp  609 (658)
                      +|+...
T Consensus       117 ~v~~~~  122 (216)
T 3ofk_A          117 LIVVAE  122 (216)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            999753

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=93.27  E-value=0.093  Score=41.57  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      -|.++|+|||+++-|.+|++.-.. |.+.--.+||.+
T Consensus        14 ~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef   49 (52)
T 2ooa_A           14 KIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF   49 (52)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence            679999999999999999998766 777766677665

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=93.24  E-value=0.14  Score=46.25  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+...+.+.. +-..++++|+++......+.+....+....+.+.+|..+    .++   ...+.||
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D   96 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD   96 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence            45789999999999999887762 113478999999988887766543322212233444421    111   1116799


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +|+.+.+...
T Consensus        97 ~i~~~~~~~~  106 (178)
T 3hm2_A           97 VIFIGGGLTA  106 (178)
T ss_dssp             EEEECC-TTC
T ss_pred             EEEECCcccH
Confidence            9997665543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=93.24  E-value=0.08  Score=51.45  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=52.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+-||.|.+.+.|..+.-. .-++++|+++.+....+.+....+.....++.+|+.++...     ....+.|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCc
Confidence            35678999999999888877743211 23789999998888877765544322233456666554310     0012579


Q ss_pred             cEEEecC
Q 006172          603 DFVICQN  609 (658)
Q Consensus       603 DLVIGGp  609 (658)
                      |+|+...
T Consensus       143 D~V~~~~  149 (240)
T 1xdz_A          143 DIVTARA  149 (240)
T ss_dssp             EEEEEEC
T ss_pred             cEEEEec
Confidence            9999644

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=93.19  E-value=0.07  Score=53.93  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=54.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----------CCCCccccccccccChhh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK  591 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-----------~~g~l~~~~DI~~Lt~~~  591 (658)
                      +.+.+||+|.||.|++...+.+.|.  .-+.+||+|+...+..+.++ ..+           .+...++.+|..+.    
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~----  146 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF----  146 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence            4557899999999999998887753  46889999999998888876 321           11122344554321    


Q ss_pred             HHHhhhccCCccEEEecCCC
Q 006172          592 FESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       592 Ie~l~~~~g~~DLVIGGpPC  611 (658)
                      +.   . .+.||+|+.-+|+
T Consensus       147 l~---~-~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          147 IK---N-NRGFDVIIADSTD  162 (281)
T ss_dssp             HH---H-CCCEEEEEEECCC
T ss_pred             hc---c-cCCeeEEEECCCC
Confidence            11   1 3579999988876

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=93.17  E-value=0.23  Score=47.31  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=51.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ..+.+|||+.||.|.+...|.+. |-. ..++++|+++.+.+..+.+...  .....++.+|+.+...  +   ....+.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~--~~~v~~~~~d~~~~~~--~---~~~~~~  143 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEE--Y---RALVPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGG--G---TTTCCC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhc--cCCCEEEEccCCCcch--h---hcccCC
Confidence            34578999999999999988765 421 2478999999776655543321  1233355677765321  0   011247


Q ss_pred             ccEEEecCC
Q 006172          602 IDFVICQNS  610 (658)
Q Consensus       602 ~DLVIGGpP  610 (658)
                      ||+|+...|
T Consensus       144 ~D~v~~~~~  152 (227)
T 1g8a_A          144 VDVIFEDVA  152 (227)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            999997666

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=93.13  E-value=0.14  Score=53.89  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+||||.||.|.+.+.+.++|.  .-|++||++ ......+.+....+... ..++.+|+.++...         +.|
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~  130 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV  130 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence            457899999999999999999996  357899999 55455555443322222 23567888776521         579


Q ss_pred             cEEEecC
Q 006172          603 DFVICQN  609 (658)
Q Consensus       603 DLVIGGp  609 (658)
                      |+|+..+
T Consensus       131 D~Iv~~~  137 (376)
T 3r0q_C          131 DVIISEW  137 (376)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999744

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=93.12  E-value=0.14  Score=49.74  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=61.2

Q ss_pred             cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006172          507 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  586 (658)
Q Consensus       507 qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~  586 (658)
                      +...+..++..+..  ..+.+|||+-||.|.+...|.+.+.   .++++|+++......+......+.....+..+|+.+
T Consensus        22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~   96 (260)
T 1vl5_A           22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ   96 (260)
T ss_dssp             -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred             CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence            44445555554432  2457899999999999999988874   478999999888777665543322233456778776


Q ss_pred             cChhhHHHhhhccCCccEEEecCCCC
Q 006172          587 LTTKKFESLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       587 Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  612 (658)
                      +.-        ..+.||+|+.....+
T Consensus        97 l~~--------~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           97 MPF--------TDERFHIVTCRIAAH  114 (260)
T ss_dssp             CCS--------CTTCEEEEEEESCGG
T ss_pred             CCC--------CCCCEEEEEEhhhhH
Confidence            541        124799998765443

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.08  E-value=0.27  Score=41.54  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=33.6

Q ss_pred             hhHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           97 LHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        97 ~~~~~~~~lv~MGF~-eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      .+.+++..|+.|||. ++.+.+|+..++-+  ++.-+|+|+..
T Consensus        28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~   68 (74)
T 1vej_A           28 RYQQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGA   68 (74)
T ss_dssp             TSHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            367799999999995 78889999998865  68889999865

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=93.03  E-value=0.26  Score=46.62  Aligned_cols=78  Identities=8%  Similarity=0.026  Sum_probs=52.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChhhHHHhhhc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-----g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      .+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+..     ...+..+|+..+..        .
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~   99 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R   99 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence            3468999999999999999988732 35789999999988887765432211     12244566643331        1


Q ss_pred             cCCccEEEecCC
Q 006172          599 LGSIDFVICQNS  610 (658)
Q Consensus       599 ~g~~DLVIGGpP  610 (658)
                      .+.||+|+....
T Consensus       100 ~~~fD~v~~~~~  111 (217)
T 3jwh_A          100 FHGYDAATVIEV  111 (217)
T ss_dssp             GCSCSEEEEESC
T ss_pred             CCCcCEEeeHHH
Confidence            256888886543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=93.00  E-value=0.11  Score=50.58  Aligned_cols=84  Identities=14%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+.+.+.+.+-. ..+++||+++......+.+....+.....++.+|+.++-.    .. ...+.+|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~----~~-~~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLH----KM-IPDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHH----HH-SCTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----HH-cCCCChh
Confidence            3568999999999999998876533 2478999999987777665443332233345666654311    11 1236799


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +|+--+|+.-
T Consensus       108 ~v~~~~~~p~  117 (218)
T 3dxy_A          108 MVQLFFPDPW  117 (218)
T ss_dssp             EEEEESCCCC
T ss_pred             eEEEeCCCCc
Confidence            9988776553

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=92.97  E-value=0.084  Score=40.49  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      -+..+++|||+ +..+.+|++..+. |++.-+|+|+.
T Consensus        10 ~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~   45 (46)
T 2bwb_A           10 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN   45 (46)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHc
Confidence            46899999995 7789999999985 89999999984

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=92.94  E-value=0.23  Score=52.43  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=22.0

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCC
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQD   39 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~   39 (658)
                      +++..|.+|||+++-|.++|..+-.-
T Consensus        48 ~~l~~L~d~Gfs~~~i~~il~~~P~i   73 (335)
T 4fp9_B           48 RVMSSLLDMGFSNAHINELLSVRRGA   73 (335)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHhCccc
Confidence            47788999999999999999887643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=92.92  E-value=0.16  Score=48.84  Aligned_cols=72  Identities=8%  Similarity=0.005  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~-~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+..     .....++.+|+. .+...       ..+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~-------~~~~  111 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAAR---WAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG-------LGAP  111 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT-------CCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc-------CCCC
Confidence            45689999999999999999998863   78999999988777654     223345677874 23210       0257


Q ss_pred             ccEEEecC
Q 006172          602 IDFVICQN  609 (658)
Q Consensus       602 ~DLVIGGp  609 (658)
                      ||+|+..+
T Consensus       112 fD~v~~~~  119 (226)
T 3m33_A          112 FGLIVSRR  119 (226)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99998764

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=92.88  E-value=0.13  Score=52.38  Aligned_cols=81  Identities=15%  Similarity=0.073  Sum_probs=55.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+||||-||.|.+++.|.+.|.+   |+++|+++......+......      .+..|+.+++.....   ...+.|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~---~~~~~f  111 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPK---ELAGHF  111 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCG---GGTTCC
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhc------cceeeeeeccccccc---ccCCCc
Confidence            35679999999999999999999974   788999999988877643211      234555555431000   012579


Q ss_pred             cEEEecCCCCCcc
Q 006172          603 DFVICQNSVPQIP  615 (658)
Q Consensus       603 DLVIGGpPCQ~FS  615 (658)
                      |+|+.....+.|.
T Consensus       112 D~Vv~~~~l~~~~  124 (261)
T 3iv6_A          112 DFVLNDRLINRFT  124 (261)
T ss_dssp             SEEEEESCGGGSC
T ss_pred             cEEEEhhhhHhCC
Confidence            9999876555443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=92.83  E-value=0.22  Score=46.89  Aligned_cols=73  Identities=22%  Similarity=0.145  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++......+....    ....+..+|+.++...         +.||
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD  108 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID  108 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence            4578999999999999999999864   6889999998877765432    1233567788776421         5799


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+......
T Consensus       109 ~v~~~~~l~  117 (220)
T 3hnr_A          109 TIVSTYAFH  117 (220)
T ss_dssp             EEEEESCGG
T ss_pred             EEEECcchh
Confidence            999775443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=92.82  E-value=0.12  Score=51.50  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+-||.|...+.+..+.=. .-|+++|+++.+....+.+....+.....++.+|+.++....     ...+.|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence            45689999999999888887765211 247899999999888887665443222334556665543210     012579


Q ss_pred             cEEEe
Q 006172          603 DFVIC  607 (658)
Q Consensus       603 DLVIG  607 (658)
                      |+|+.
T Consensus       153 D~I~s  157 (249)
T 3g89_A          153 ARAVA  157 (249)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99985

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=92.81  E-value=0.084  Score=50.92  Aligned_cols=76  Identities=20%  Similarity=0.111  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.+.  ..++++|+++......+......+.....++..|+.++..        ..+.||
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD  148 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD  148 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence            467999999999999998887763  3578999999998887765443211111234566655432        124699


Q ss_pred             EEEecC
Q 006172          604 FVICQN  609 (658)
Q Consensus       604 LVIGGp  609 (658)
                      +|+...
T Consensus       149 ~v~~~~  154 (241)
T 2ex4_A          149 VIWIQW  154 (241)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            998653

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=92.79  E-value=0.14  Score=51.27  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC---CCCccccccccccChhhHHHhhhccCCc
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~---~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      -+||||-||.|.+...|.+.|.+   ++++|+++......+......+.   ....++.+|+.++..         .+.|
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~f  151 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKRF  151 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCCE
T ss_pred             CcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCCc
Confidence            48999999999999999999874   68899999988887765543210   123356788877642         2578


Q ss_pred             cEEEe
Q 006172          603 DFVIC  607 (658)
Q Consensus       603 DLVIG  607 (658)
                      |+|+.
T Consensus       152 D~v~~  156 (299)
T 3g2m_A          152 GTVVI  156 (299)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            97774

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=92.78  E-value=0.099  Score=58.22  Aligned_cols=85  Identities=12%  Similarity=0.064  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc----CC-------------ceeeEEEeeCCHHHHHHHHHHhhhcCCCC-----Ccccc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNRRILKRWWESSGQTG-----ELVQI  581 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a----Gi-------------~~k~vvavEid~~a~~t~k~~~~~~n~~g-----~l~~~  581 (658)
                      .+.+|+|..||.|||-+.+.+.    +-             ....++++|+++.+.++.+.+..-++...     ..+..
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            4689999999999998776532    10             11258999999999887776543332221     22344


Q ss_pred             ccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 006172          582 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  615 (658)
Q Consensus       582 ~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  615 (658)
                      +|.-..  .     ....+.||+|++-||.....
T Consensus       249 gDtL~~--~-----~~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          249 GNTLGS--D-----GENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             SCTTSH--H-----HHTSCCEEEEEECCCCTTCS
T ss_pred             CCCccc--c-----cccccCCeEEEECCCccccc
Confidence            543211  1     11236799999999987654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=92.77  E-value=0.15  Score=51.37  Aligned_cols=80  Identities=15%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172          521 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       521 ~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      ..+.+.+|||+-||.|.+...+..+..+-..++++|+++......+.+....+... ..++.+|+.++..        . 
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~-  185 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R-  185 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence            34567899999999999988873222222357899999999888877654322111 2245677766542        1 


Q ss_pred             CCccEEEecC
Q 006172          600 GSIDFVICQN  609 (658)
Q Consensus       600 g~~DLVIGGp  609 (658)
                      +.||+|+...
T Consensus       186 ~~fD~v~~~~  195 (305)
T 3ocj_A          186 EGYDLLTSNG  195 (305)
T ss_dssp             SCEEEEECCS
T ss_pred             CCeEEEEECC
Confidence            5688888533

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=92.76  E-value=0.22  Score=47.17  Aligned_cols=80  Identities=14%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             CCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 006172          525 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL-  599 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~-  599 (658)
                      +.+|||+-||.|..++.|.+.   +.   .++++|+++......+.++...+... ..++.+|+.+.    +..+.... 
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~  137 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ  137 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence            468999999999999998876   44   47899999999888888776543222 22445665432    11111111 


Q ss_pred             -CCccEEEecCCC
Q 006172          600 -GSIDFVICQNSV  611 (658)
Q Consensus       600 -g~~DLVIGGpPC  611 (658)
                       +.||+|+--+|.
T Consensus       138 ~~~fD~v~~~~~~  150 (225)
T 3tr6_A          138 AWQYDLIYIDADK  150 (225)
T ss_dssp             TTCEEEEEECSCG
T ss_pred             CCCccEEEECCCH
Confidence             679999965553

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=92.70  E-value=0.14  Score=48.67  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=51.4

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ++.+.+|||+-||.|.+...+.+. .   .++++|+++......+......+ ....+...|+.++..         .+.
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~~   96 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PEP   96 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SSC
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CCC
Confidence            444579999999999999888777 3   47899999998887776654322 223345677765532         146


Q ss_pred             ccEEEec
Q 006172          602 IDFVICQ  608 (658)
Q Consensus       602 ~DLVIGG  608 (658)
                      +|+|+..
T Consensus        97 fD~v~~~  103 (243)
T 3d2l_A           97 VDAITIL  103 (243)
T ss_dssp             EEEEEEC
T ss_pred             cCEEEEe
Confidence            8888854

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=92.65  E-value=0.26  Score=46.56  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=37.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      .+.+|||+-||.|.+...|.+.|-. ..++++|+++.+....+..+.
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            3568999999999999999988732 357899999999888877654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=92.65  E-value=0.23  Score=46.74  Aligned_cols=83  Identities=19%  Similarity=0.135  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+...-.        ..+.||
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD  148 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence            457999999999999988887652112478999999988877766543322222244556532111        125799


Q ss_pred             EEEecCCCCCc
Q 006172          604 FVICQNSVPQI  614 (658)
Q Consensus       604 LVIGGpPCQ~F  614 (658)
                      +|+...++..+
T Consensus       149 ~v~~~~~~~~~  159 (215)
T 2yxe_A          149 RIYTTAAGPKI  159 (215)
T ss_dssp             EEEESSBBSSC
T ss_pred             EEEECCchHHH
Confidence            99988776654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=92.64  E-value=0.12  Score=49.55  Aligned_cols=93  Identities=17%  Similarity=0.162  Sum_probs=58.6

Q ss_pred             hhcccccccCCCCCcccccCCCCChHHHHHHH-cCC-----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcccc
Q 006172          513 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQI  581 (658)
Q Consensus       513 ~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~-aGi-----~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~  581 (658)
                      ..+..|......+.+|||+-||.|.+...|.+ .|.     . ..++++|+++...+..+.+....+     .....+..
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            33444443345567999999999999988776 342     0 147899999998877766543211     11122455


Q ss_pred             ccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 006172          582 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  614 (658)
Q Consensus       582 ~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  614 (658)
                      +|+.+.-.        ..+.||+|+...++..+
T Consensus       152 ~d~~~~~~--------~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          152 GDGRKGYP--------PNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             SCGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred             CCcccCCC--------cCCCccEEEECCchHHH
Confidence            66654111        12579999988887655

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=92.61  E-value=0.23  Score=47.93  Aligned_cols=81  Identities=23%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||.|.+...+.+.+-  ..++++|+++......+.+....+.....+..+|+. ..   +    ...+.||
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~----~~~~~fD  160 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---F----PPKAPYD  160 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---C----GGGCCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---C----CCCCCcc
Confidence            456899999999999988887652  247899999998887776654332222223455551 11   1    1124599


Q ss_pred             EEEecCCCCCc
Q 006172          604 FVICQNSVPQI  614 (658)
Q Consensus       604 LVIGGpPCQ~F  614 (658)
                      +|+...++..+
T Consensus       161 ~Ii~~~~~~~~  171 (235)
T 1jg1_A          161 VIIVTAGAPKI  171 (235)
T ss_dssp             EEEECSBBSSC
T ss_pred             EEEECCcHHHH
Confidence            99987776654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=92.60  E-value=0.12  Score=52.78  Aligned_cols=81  Identities=14%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      +.+.+||+|.||.|++...+.+. +.  .-+++||+|+...+..+.++...    +.+...++.+|+.+.-.       .
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~  159 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K  159 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence            35578999999999999888876 33  45789999999988888776321    11222345566543211       1


Q ss_pred             ccCCccEEEecCCCC
Q 006172          598 KLGSIDFVICQNSVP  612 (658)
Q Consensus       598 ~~g~~DLVIGGpPCQ  612 (658)
                      ..+.||+|+..+||.
T Consensus       160 ~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          160 FKNEFDVIIIDSTDP  174 (296)
T ss_dssp             CSSCEEEEEEEC---
T ss_pred             CCCCceEEEEcCCCc
Confidence            125799999888774

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=92.55  E-value=0.09  Score=49.97  Aligned_cols=73  Identities=15%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      |+.+.+.+.+|||+-||.|.+...|.+.|.   .++++|+++......+...     ....++.+|+.++..        
T Consensus        34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------   97 (239)
T 3bxo_A           34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL--------   97 (239)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC--------
T ss_pred             HHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc--------
Confidence            444345678999999999999999998875   4678999999887776542     122345667765531        


Q ss_pred             ccCCccEEEe
Q 006172          598 KLGSIDFVIC  607 (658)
Q Consensus       598 ~~g~~DLVIG  607 (658)
                       .+.+|+|+.
T Consensus        98 -~~~~D~v~~  106 (239)
T 3bxo_A           98 -GRKFSAVVS  106 (239)
T ss_dssp             -SSCEEEEEE
T ss_pred             -CCCCcEEEE
Confidence             146788773

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=92.52  E-value=0.16  Score=52.84  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|.+...+.++|.  .-|+++|+++ .....+......+... ..++.+|+.++..        ..+.|
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  134 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL--------PVEKV  134 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------SSSCE
T ss_pred             CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC--------CCCce
Confidence            457899999999999999999986  3578999996 4444444333222222 2356778877632        12579


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+.-++
T Consensus       135 D~Iis~~~  142 (349)
T 3q7e_A          135 DIIISEWM  142 (349)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEccc
Confidence            99997543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=92.51  E-value=0.15  Score=50.11  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      .+.+.+|||+-||.|++...+.+.|.  ..++++|+++......+......+. ....++.+|+.++...       ..+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~  132 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGK  132 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSS
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCC
Confidence            34668999999999999999988885  2478999999998887776543221 1123456677655310       124


Q ss_pred             CccEEEecC
Q 006172          601 SIDFVICQN  609 (658)
Q Consensus       601 ~~DLVIGGp  609 (658)
                      .||+|+...
T Consensus       133 ~fD~v~~~~  141 (298)
T 1ri5_A          133 EFDVISSQF  141 (298)
T ss_dssp             CEEEEEEES
T ss_pred             CcCEEEECc
Confidence            688887654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=92.49  E-value=0.26  Score=49.32  Aligned_cols=73  Identities=18%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+.+|||+-||.|++...+.+. |.+   ++++|+++......+......+.. ...+..+|+.++           .+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~  136 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVN---VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE  136 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence            35679999999999999988877 853   789999999888777765543322 223556777665           15


Q ss_pred             CccEEEecC
Q 006172          601 SIDFVICQN  609 (658)
Q Consensus       601 ~~DLVIGGp  609 (658)
                      .||+|+...
T Consensus       137 ~fD~v~~~~  145 (302)
T 3hem_A          137 PVDRIVSLG  145 (302)
T ss_dssp             CCSEEEEES
T ss_pred             CccEEEEcc
Confidence            799998654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=92.47  E-value=0.24  Score=48.05  Aligned_cols=84  Identities=13%  Similarity=0.015  Sum_probs=58.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|...+.|.+++- -..++++|+++...+..+.++...+.. ...++.+|+.+.-..   .+   .+.|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f  143 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY  143 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence            346899999999999999988432 235789999999988888877654332 233556777654220   11   2579


Q ss_pred             cEEEecCCCCCc
Q 006172          603 DFVICQNSVPQI  614 (658)
Q Consensus       603 DLVIGGpPCQ~F  614 (658)
                      |+|+-..++...
T Consensus       144 D~V~~~~~~~~~  155 (232)
T 3ntv_A          144 DMIFIDAAKAQS  155 (232)
T ss_dssp             EEEEEETTSSSH
T ss_pred             cEEEEcCcHHHH
Confidence            999977766654

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.42  E-value=0.081  Score=42.25  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             hhhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           14 NLRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        14 ~l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      +...+|..||| ..++-.+|++.+|. |.+..++.||+..
T Consensus        11 ~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~   49 (54)
T 2cp8_A           11 ALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLS   49 (54)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhcc
Confidence            36689999999 99999999999988 8999999999864

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=92.28  E-value=0.27  Score=49.03  Aligned_cols=53  Identities=23%  Similarity=0.118  Sum_probs=42.8

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172          519 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  572 (658)
Q Consensus       519 K~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~  572 (658)
                      .++.+.+.+|+|+=||.|-+.+.+.+.|.. ..|+++|+++.+....+.+-...
T Consensus        10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~   62 (225)
T 3kr9_A           10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH   62 (225)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence            344556789999999999999999998843 46889999999988888765443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=92.27  E-value=0.24  Score=48.64  Aligned_cols=79  Identities=22%  Similarity=0.225  Sum_probs=53.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~-n--~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|||+.||.|.+...+.+. |-. ..++++|+++......+.+.... +  .....+..+|+.++..        ..
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~  169 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD  169 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence            4568999999999999998874 311 24789999999888777765432 1  1122345677765521        12


Q ss_pred             CCccEEEecCCC
Q 006172          600 GSIDFVICQNSV  611 (658)
Q Consensus       600 g~~DLVIGGpPC  611 (658)
                      +.||+|+...|.
T Consensus       170 ~~~D~v~~~~~~  181 (280)
T 1i9g_A          170 GSVDRAVLDMLA  181 (280)
T ss_dssp             TCEEEEEEESSC
T ss_pred             CceeEEEECCcC
Confidence            479999986653

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=92.19  E-value=0.11  Score=58.07  Aligned_cols=84  Identities=12%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-C-CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-G-i~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++..  ...+..+|.-..+   ..  ....
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d---~p--~~~~  295 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED---WP--TQEP  295 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC---SC--CSSC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc---cc--cccc
Confidence            4679999999999998776543 1 01135889999999888777654333211  1123445533221   00  0123


Q ss_pred             CCccEEEecCCCC
Q 006172          600 GSIDFVICQNSVP  612 (658)
Q Consensus       600 g~~DLVIGGpPCQ  612 (658)
                      ..||+|+|-||-.
T Consensus       296 ~~fD~IvaNPPf~  308 (542)
T 3lkd_A          296 TNFDGVLMNPPYS  308 (542)
T ss_dssp             CCBSEEEECCCTT
T ss_pred             ccccEEEecCCcC
Confidence            5799999999865

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=92.03  E-value=0.32  Score=46.88  Aligned_cols=77  Identities=13%  Similarity=0.081  Sum_probs=49.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ..+.+||||-||.|.+...|.+. | . ..++++|+++.+.+..+.+...  .....++.+|+.+...     .....+.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~-----~~~~~~~  143 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQE-----YANIVEK  143 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGG-----GTTTSCC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhc--CCCeEEEECCCCCccc-----ccccCcc
Confidence            35678999999999999888765 5 2 3578999999988777654322  1223345677765211     0001157


Q ss_pred             ccEEEec
Q 006172          602 IDFVICQ  608 (658)
Q Consensus       602 ~DLVIGG  608 (658)
                      ||+|+..
T Consensus       144 ~D~v~~~  150 (230)
T 1fbn_A          144 VDVIYED  150 (230)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999843

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=92.00  E-value=0.21  Score=48.04  Aligned_cols=75  Identities=13%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+.+|||+-||.|.+...+.+. |.   .++++|+++......+......  ....++.+|+.++..        ..+.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~  120 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF--------PENN  120 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC--------CTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC--------CCCc
Confidence            35679999999999999998886 65   3788999999887776543211  223345677766531        1257


Q ss_pred             ccEEEecCC
Q 006172          602 IDFVICQNS  610 (658)
Q Consensus       602 ~DLVIGGpP  610 (658)
                      ||+|+....
T Consensus       121 fD~v~~~~~  129 (266)
T 3ujc_A          121 FDLIYSRDA  129 (266)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEeHHHH
Confidence            899886543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=91.98  E-value=0.2  Score=48.18  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|++...+.+..- -..++++|+++...+..+.++...+.. ...+..+|+.+.-    .... ..+.|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f  127 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF  127 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence            346899999999999998887621 124789999999988888776544321 1224456665431    1110 12579


Q ss_pred             cEEEecCCCCCc
Q 006172          603 DFVICQNSVPQI  614 (658)
Q Consensus       603 DLVIGGpPCQ~F  614 (658)
                      |+|+...||...
T Consensus       128 D~I~~~~~~~~~  139 (233)
T 2gpy_A          128 DVLFIDAAKGQY  139 (233)
T ss_dssp             EEEEEEGGGSCH
T ss_pred             cEEEECCCHHHH
Confidence            999998888543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=91.98  E-value=0.25  Score=46.96  Aligned_cols=74  Identities=22%  Similarity=0.205  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...+.+.|..  .++++|+++......+.....   .+..+..+|+.++..        ..+.||
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD  109 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD  109 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence            4578999999999999999999862  478899999988777654321   122345566665431        124688


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+....
T Consensus       110 ~v~~~~~  116 (243)
T 3bkw_A          110 LAYSSLA  116 (243)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            8886543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=91.92  E-value=0.17  Score=48.81  Aligned_cols=75  Identities=17%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.+.  ..++++|+++...+..+.+.... .....++.+|+.++..    .+  .-+.||
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~----~~--~~~~fD  130 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAP----TL--PDGHFD  130 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGG----GS--CTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHhhc----cc--CCCceE
Confidence            467899999999999999977765  35789999999988877754332 1222244566554311    00  125799


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus       131 ~V~~  134 (236)
T 1zx0_A          131 GILY  134 (236)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=91.89  E-value=0.18  Score=50.96  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      +++.+||+|.||.|++...+.+. |.  .-+.+||+|+...+..+.++...    +.+...++.+|..+.    +.   .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~  144 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K  144 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence            45689999999999999888776 43  45789999999999888876431    112233455665431    11   1


Q ss_pred             ccCCccEEEecCCC
Q 006172          598 KLGSIDFVICQNSV  611 (658)
Q Consensus       598 ~~g~~DLVIGGpPC  611 (658)
                      ..+.+|+|+..+|.
T Consensus       145 ~~~~fD~Ii~d~~~  158 (275)
T 1iy9_A          145 SENQYDVIMVDSTE  158 (275)
T ss_dssp             CCSCEEEEEESCSS
T ss_pred             CCCCeeEEEECCCC
Confidence            12579999987765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=91.86  E-value=0.37  Score=45.77  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G  600 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~--g  600 (658)
                      .+.+|||+.||.|...+.+.++.-+-..++++|+++......+.++...+.. ...++.+|+.+.    +..+....  +
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~  144 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG  144 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence            3468999999999999998875110124789999999988888877654321 222345565432    12221111  5


Q ss_pred             CccEEEecCCCC
Q 006172          601 SIDFVICQNSVP  612 (658)
Q Consensus       601 ~~DLVIGGpPCQ  612 (658)
                      .||+|+.-+|..
T Consensus       145 ~~D~v~~d~~~~  156 (229)
T 2avd_A          145 TFDVAVVDADKE  156 (229)
T ss_dssp             CEEEEEECSCST
T ss_pred             CccEEEECCCHH
Confidence            799999877644

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=91.84  E-value=0.31  Score=48.82  Aligned_cols=52  Identities=17%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172          520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  572 (658)
Q Consensus       520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~  572 (658)
                      ++.+.+-+|+|+=||.|-+.+.+.+.|.. ..|+++|+++.+....+.+-...
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~   68 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEH   68 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence            34456688999999999999999999843 46889999999998888765543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=91.82  E-value=0.19  Score=57.80  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcC------Cc-----------------------------------eeeEEEeeCCHHHH
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR  562 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aG------i~-----------------------------------~k~vvavEid~~a~  562 (658)
                      .+.++||.|||.|++.+.+-..+      +.                                   -..++++|+|+.+.
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            45789999999999976554432      10                                   02478999999999


Q ss_pred             HHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 006172          563 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       563 ~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  611 (658)
                      +.-+.+....+... ..+..+|+.++....      ..+.+|+||.-||=
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY  313 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence            88888765543221 224567776654210      11379999999984

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=91.79  E-value=0.18  Score=48.20  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             CCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--
Q 006172          525 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--  598 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~--  598 (658)
                      +.+||||.||.|..++.+.++   |.   .++++|+++......+.++...+... ..++.+|+.++-    +.+...  
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~~  131 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKYD  131 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhcC
Confidence            468999999999999988874   43   47899999999888888765443211 224456654321    111111  


Q ss_pred             cCCccEEEecCCCCCc
Q 006172          599 LGSIDFVICQNSVPQI  614 (658)
Q Consensus       599 ~g~~DLVIGGpPCQ~F  614 (658)
                      .+.||+|+-..++..+
T Consensus       132 ~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             CCCCSEEEECSCGGGH
T ss_pred             CCceEEEEEcCCcccc
Confidence            1579999877666554

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=91.72  E-value=0.14  Score=41.20  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      -+..+++|||+ ++.+.+|++..+. |++.-+|+|+..
T Consensus        20 qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~   56 (58)
T 1wr1_B           20 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG   56 (58)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence            56899999995 7799999999985 999999999973

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=91.62  E-value=0.36  Score=49.91  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +-+||||-||.|.+...+.+.|-.. .++++|+++.+....+.+....+.. ..+..+|+.+..          .+.||+
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~  264 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM  264 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence            3589999999999999998887432 4678999999888777765443222 223455654321          257999


Q ss_pred             EEecCCCC
Q 006172          605 VICQNSVP  612 (658)
Q Consensus       605 VIGGpPCQ  612 (658)
                      |+..+|..
T Consensus       265 Iv~~~~~~  272 (343)
T 2pjd_A          265 IISNPPFH  272 (343)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988865

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=91.62  E-value=0.2  Score=48.95  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+.+|||+-||.|.+...|.+.|.+   ++++|+++...+..+....     + .+...|+.++..        ..+.
T Consensus        52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~-~~~~~d~~~~~~--------~~~~  114 (260)
T 2avn_A           52 LKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----K-NVVEAKAEDLPF--------PSGA  114 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----S-CEEECCTTSCCS--------CTTC
T ss_pred             cCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----C-CEEECcHHHCCC--------CCCC
Confidence            345679999999999999999998864   6889999998877665321     1 256677776541        1257


Q ss_pred             ccEEEecCC
Q 006172          602 IDFVICQNS  610 (658)
Q Consensus       602 ~DLVIGGpP  610 (658)
                      ||+|+...+
T Consensus       115 fD~v~~~~~  123 (260)
T 2avn_A          115 FEAVLALGD  123 (260)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEcch
Confidence            999986543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=91.58  E-value=0.24  Score=46.32  Aligned_cols=76  Identities=24%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      |+.+.+.+.+|||+-||.|.+...+   |+  ..++++|+++...+..+...     ....+..+|+.++..        
T Consensus        30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------   91 (211)
T 2gs9_A           30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF--------   91 (211)
T ss_dssp             HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred             HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence            3344446689999999999988777   65  24789999999877766543     223355677766531        


Q ss_pred             ccCCccEEEecCCC
Q 006172          598 KLGSIDFVICQNSV  611 (658)
Q Consensus       598 ~~g~~DLVIGGpPC  611 (658)
                      ..+.||+|+....-
T Consensus        92 ~~~~fD~v~~~~~l  105 (211)
T 2gs9_A           92 PGESFDVVLLFTTL  105 (211)
T ss_dssp             CSSCEEEEEEESCT
T ss_pred             CCCcEEEEEEcChh
Confidence            12479999866443

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=91.58  E-value=0.23  Score=44.52  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHhc-CCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           97 LHIEKRASLLMM-NFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        97 ~~~~~~~~lv~M-GF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      ...+++..|+.| ||++++|..|+.+|+-|  ++.-+++|+..
T Consensus        38 d~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg   78 (104)
T 1wj7_A           38 DFEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEG   78 (104)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred             cHHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            367889999999 99999999999999887  46677777754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=91.50  E-value=0.13  Score=51.57  Aligned_cols=76  Identities=21%  Similarity=0.087  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+.||.|.++..|.+.|-  .-++++|+|+.....++..    ......++.+|+.+++-..+      .+ ..
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~------~~-~~   97 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSL------GK-EL   97 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGS------CS-SE
T ss_pred             CcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHc------cC-Cc
Confidence            356899999999999999998862  2478999999988877643    12223467789988865432      12 33


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+|-+|=+
T Consensus        98 ~vv~NlPy~  106 (249)
T 3ftd_A           98 KVVGNLPYN  106 (249)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEECchh
Confidence            777877754

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=91.48  E-value=0.13  Score=43.45  Aligned_cols=35  Identities=11%  Similarity=0.212  Sum_probs=31.8

Q ss_pred             hhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      -+..++.||| .++.|.+||+..+. |++.-+|+|+.
T Consensus        32 qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~   67 (74)
T 1vej_A           32 ELEELKALGFANRDANLQALVATDG-DIHAAIEMLLG   67 (74)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence            5699999999 58999999999885 99999999997

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=91.43  E-value=0.33  Score=50.42  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|.+.+.+.++|.  .-|+++|+++.+ ...+......+. ....++.+|+.++..         .+.+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~  117 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  117 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence            456899999999999999999886  357899999744 344443322221 122355677776531         1479


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+...+
T Consensus       118 D~Ivs~~~  125 (348)
T 2y1w_A          118 DIIISEPM  125 (348)
T ss_dssp             EEEEECCC
T ss_pred             eEEEEeCc
Confidence            99998765

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=91.40  E-value=0.25  Score=46.13  Aligned_cols=76  Identities=14%  Similarity=0.101  Sum_probs=50.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.|.+   ++++|+++......+..      ....+...|+.++.....    ...+.||
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD  118 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYD  118 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCcc
Confidence            3478999999999999999999874   68899999987776643      112244555554421100    0113488


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+......
T Consensus       119 ~v~~~~~l~  127 (227)
T 3e8s_A          119 LICANFALL  127 (227)
T ss_dssp             EEEEESCCC
T ss_pred             EEEECchhh
Confidence            888765444

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=91.39  E-value=0.3  Score=39.05  Aligned_cols=38  Identities=11%  Similarity=0.098  Sum_probs=30.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  137 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a  137 (658)
                      .++.+..|+.|||+.+.|.+|+.....|-  +.-.+.|+.
T Consensus         7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv--~~AtNiLlE   44 (56)
T 2juj_A            7 LSSEIENLMSQGYSYQDIQKALVIAQNNI--EMAKNILRE   44 (56)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTTCS--HHHHHHHHH
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHhcccH--HHHHHHHHH
Confidence            45689999999999999999999988774  444444443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=91.28  E-value=0.16  Score=45.08  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=50.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g  600 (658)
                      ..+.+|||+-||.|++...+.+. |-. ..++++|+++ ....          ....+...|+.++.. +.+.... ..+
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence            34578999999999999988876 422 2467899998 4211          122245667765431 0111111 125


Q ss_pred             CccEEEecCCCCCcc
Q 006172          601 SIDFVICQNSVPQIP  615 (658)
Q Consensus       601 ~~DLVIGGpPCQ~FS  615 (658)
                      .||+|+..+|+..+.
T Consensus        88 ~~D~i~~~~~~~~~~  102 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSG  102 (180)
T ss_dssp             CEEEEEECCCCCCCS
T ss_pred             ceeEEEECCCccccC
Confidence            799999999887654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.27  E-value=0.23  Score=49.58  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=36.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      .+-.|||+|||.|...++..++|-+   ++++|+++.+..+.+..+
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~  254 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVL  254 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHH
Confidence            4567999999999999999999964   678999999888776654

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=91.19  E-value=0.29  Score=38.70  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             hhhhhhccCCCCHH-HHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           14 NLRSSFIGMGFSPS-LVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        14 ~l~~~fi~MGF~~e-~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      .-+..+..|||+.+ .+.+|++..+- |++.-+|+|+..
T Consensus        11 ~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~   48 (54)
T 2dah_A           11 VQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQS   48 (54)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence            35699999999664 67999999985 999999999975

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=91.16  E-value=0.4  Score=48.48  Aligned_cols=52  Identities=12%  Similarity=-0.104  Sum_probs=42.2

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172          520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  572 (658)
Q Consensus       520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~  572 (658)
                      ++.+.+-+|+|+=||.|-+.+.+.+.|. ...++++|+++.+....+.+-...
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~   68 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSS   68 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            3445668999999999999999999984 346889999999988888765443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=91.15  E-value=0.42  Score=45.98  Aligned_cols=73  Identities=25%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+.+|||+=||.|.+...|.+. |.+   ++++|+++......+......+.. ...++.+|+.++..         .+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~  102 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE  102 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence            35678999999999999888765 653   589999999887777655432211 12345677765542         14


Q ss_pred             CccEEEe
Q 006172          601 SIDFVIC  607 (658)
Q Consensus       601 ~~DLVIG  607 (658)
                      .||+|+.
T Consensus       103 ~fD~V~~  109 (256)
T 1nkv_A          103 KCDVAAC  109 (256)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            6787775

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=91.00  E-value=0.21  Score=48.02  Aligned_cols=74  Identities=16%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+-||.|.+...|.+.|.  ..+.++|+++......+......  ....++.+|+.++..        ..+.||
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD  160 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence            467899999999999999888874  35789999999888877654321  122345667665531        124689


Q ss_pred             EEEecC
Q 006172          604 FVICQN  609 (658)
Q Consensus       604 LVIGGp  609 (658)
                      +|+...
T Consensus       161 ~v~~~~  166 (254)
T 1xtp_A          161 LIVIQW  166 (254)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            888644

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=91.00  E-value=0.46  Score=46.66  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|||+-||.|+..+.+.++   +.   .++++|+++......+.++...+... ..++.+|+.+.    +..+ ...
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~  134 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC  134 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence            3578999999999999998876   43   47899999999888888776543221 22345565432    1111 112


Q ss_pred             CCccEEEecCCCCC
Q 006172          600 GSIDFVICQNSVPQ  613 (658)
Q Consensus       600 g~~DLVIGGpPCQ~  613 (658)
                      +.||+|+-..++..
T Consensus       135 ~~fD~V~~d~~~~~  148 (248)
T 3tfw_A          135 PAFDLIFIDADKPN  148 (248)
T ss_dssp             CCCSEEEECSCGGG
T ss_pred             CCeEEEEECCchHH
Confidence            47999997776654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=90.97  E-value=0.38  Score=46.25  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.|++...|.+. |-. ..++++|+++.+...+...-.. + ....++.+|+.+...  +.   ...+.|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~  148 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAMV  148 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCcE
Confidence            4578999999999999888765 311 2478999998754433332211 1 233356677765321  11   112579


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+..+|
T Consensus       149 D~V~~~~~  156 (233)
T 2ipx_A          149 DVIFADVA  156 (233)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99998555

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=90.94  E-value=0.49  Score=43.86  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             cccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 006172          527 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       527 ~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +|||+-||.|.+...+.+. |.   .++++|+++......+......+.. ...++.+|+.++..        ..+.||+
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~  114 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDF---SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL  114 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEE---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHcCCC---eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence            8999999999999999887 43   4789999999888877765443322 22356677776541        1257999


Q ss_pred             EEecCCCC
Q 006172          605 VICQNSVP  612 (658)
Q Consensus       605 VIGGpPCQ  612 (658)
                      |+......
T Consensus       115 v~~~~~l~  122 (219)
T 3dlc_A          115 IVSRGSVF  122 (219)
T ss_dssp             EEEESCGG
T ss_pred             EEECchHh
Confidence            99765443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=90.94  E-value=0.2  Score=55.96  Aligned_cols=80  Identities=18%  Similarity=0.079  Sum_probs=49.1

Q ss_pred             CcccccCCCCChHHHHHHHc--------CC------ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChh
Q 006172          526 LTMLSVFSGIGGAEVTLHRL--------GI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK  590 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~a--------Gi------~~k~vvavEid~~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~  590 (658)
                      .+|+|.+||.|||-+.+.+.        +.      .-..++++|+++.+.++.+.+..-++....+ +..+|.-.... 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-  324 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-  324 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence            48999999999998776321        10      0135789999999988877654433322111 13444321110 


Q ss_pred             hHHHhhhccCCccEEEecCCCC
Q 006172          591 KFESLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       591 ~Ie~l~~~~g~~DLVIGGpPCQ  612 (658)
                            .....||+|++-||=.
T Consensus       325 ------~~~~~fD~Iv~NPPf~  340 (544)
T 3khk_A          325 ------HPDLRADFVMTNPPFN  340 (544)
T ss_dssp             ------CTTCCEEEEEECCCSS
T ss_pred             ------cccccccEEEECCCcC
Confidence                  0125799999999854

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=90.86  E-value=0.57  Score=43.51  Aligned_cols=75  Identities=20%  Similarity=0.106  Sum_probs=50.4

Q ss_pred             CCCCcccccCCCCChH-HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGA-EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGl-slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+.+|||+-||.|.+ ...+...|.+   ++++|+++.+.+..+......+ ....+...|+.++..        ..+.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~   89 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDES   89 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCc
Confidence            3457899999999887 3455677764   6889999998887776554322 223355677766541        1246


Q ss_pred             ccEEEecC
Q 006172          602 IDFVICQN  609 (658)
Q Consensus       602 ~DLVIGGp  609 (658)
                      ||+|+...
T Consensus        90 fD~v~~~~   97 (209)
T 2p8j_A           90 MSFVYSYG   97 (209)
T ss_dssp             EEEEEECS
T ss_pred             eeEEEEcC
Confidence            89988654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=90.85  E-value=0.35  Score=45.22  Aligned_cols=73  Identities=18%  Similarity=0.198  Sum_probs=48.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      ..+.+|||+-||.|.+...+.+.|.   .++++|+++......+...       ..+...|+.++... +     ..+.|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence            4568999999999999999998874   4788999999876655321       12445666543210 0     11467


Q ss_pred             cEEEecCCC
Q 006172          603 DFVICQNSV  611 (658)
Q Consensus       603 DLVIGGpPC  611 (658)
                      |+|+.....
T Consensus        95 D~v~~~~~l  103 (230)
T 3cc8_A           95 DCVIFGDVL  103 (230)
T ss_dssp             EEEEEESCG
T ss_pred             CEEEECChh
Confidence            887765433

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=90.84  E-value=0.47  Score=47.70  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+.+|||+-||.|++...+.+. |.+   ++++|+++......+......+.. ...+..+|+.++.           +
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~  154 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVN---VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E  154 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence            35678999999999999888876 863   688999999888777655432211 1224456665542           4


Q ss_pred             CccEEEecC
Q 006172          601 SIDFVICQN  609 (658)
Q Consensus       601 ~~DLVIGGp  609 (658)
                      .||+|+...
T Consensus       155 ~fD~v~~~~  163 (318)
T 2fk8_A          155 PVDRIVSIE  163 (318)
T ss_dssp             CCSEEEEES
T ss_pred             CcCEEEEeC
Confidence            688887654

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=90.80  E-value=0.5  Score=36.52  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      -+..+..|+.|||+.+.|.+|+.....+  |+.-.+.|+
T Consensus         4 ~e~~I~~L~s~Gf~~~~~~rAL~ia~Nn--ie~A~nIL~   40 (46)
T 2oo9_A            4 LSSEIENLMSQGYSYQDIQKALVIAQNN--IEMAKNILR   40 (46)
T ss_dssp             HHHHHHHHHHTTBCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHhhcc--HHHHHHHHH
Confidence            4567899999999999999999998776  455444444

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=90.80  E-value=0.39  Score=49.82  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=51.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|.+++.+.++|.  .-++++|+++ .....+......+. ....++.+|+.++..        ..+.+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~  132 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL--------PVEKV  132 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SCSCE
T ss_pred             CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--------CCCcE
Confidence            456899999999999999999985  3578999997 55555554433222 223355677776531        12479


Q ss_pred             cEEEecC
Q 006172          603 DFVICQN  609 (658)
Q Consensus       603 DLVIGGp  609 (658)
                      |+|+...
T Consensus       133 D~Ivs~~  139 (340)
T 2fyt_A          133 DVIISEW  139 (340)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=90.78  E-value=0.44  Score=45.81  Aligned_cols=74  Identities=9%  Similarity=0.030  Sum_probs=53.0

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+-||.|.+...+.+.  |.+   ++++|+++......+..     .....+..+|+.++..         .+.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~---v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~~   95 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNV---ITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQK   95 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTS---EEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SSC
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cCC
Confidence            4578999999999999998877  653   78899999987776653     1223356777776541         246


Q ss_pred             ccEEEecCCCCCc
Q 006172          602 IDFVICQNSVPQI  614 (658)
Q Consensus       602 ~DLVIGGpPCQ~F  614 (658)
                      ||+|+.....+-+
T Consensus        96 fD~v~~~~~l~~~  108 (259)
T 2p35_A           96 ADLLYANAVFQWV  108 (259)
T ss_dssp             EEEEEEESCGGGS
T ss_pred             cCEEEEeCchhhC
Confidence            8999886654433

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=90.66  E-value=0.53  Score=46.39  Aligned_cols=73  Identities=15%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             CCCCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+.+|||+-||.|++...+. +.|.   .++++|+++......+......+. ....+..+|+.++.           +
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  128 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E  128 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence            356799999999999998887 6676   478899999988777765543221 12224456665442           4


Q ss_pred             CccEEEecC
Q 006172          601 SIDFVICQN  609 (658)
Q Consensus       601 ~~DLVIGGp  609 (658)
                      .||+|+...
T Consensus       129 ~fD~v~~~~  137 (287)
T 1kpg_A          129 PVDRIVSIG  137 (287)
T ss_dssp             CCSEEEEES
T ss_pred             CeeEEEEeC
Confidence            688887553

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=90.64  E-value=0.29  Score=47.09  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=36.5

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 006172          520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK  566 (658)
Q Consensus       520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k  566 (658)
                      +.++.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~   80 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE   80 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence            34456789999999999999999999875   588999998776654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=90.64  E-value=0.46  Score=47.40  Aligned_cols=83  Identities=16%  Similarity=0.109  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|||+-||.|.+...|.+.  +.  ..++++|+++......+......  ......++.+|+.++....-..  ...
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~  111 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADS--VDK  111 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTT--TTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccc--ccC
Confidence            5689999999999999998852  22  35789999999887777654332  1223345678887765221000  012


Q ss_pred             CCccEEEecCC
Q 006172          600 GSIDFVICQNS  610 (658)
Q Consensus       600 g~~DLVIGGpP  610 (658)
                      +.||+|+....
T Consensus       112 ~~fD~V~~~~~  122 (299)
T 3g5t_A          112 QKIDMITAVEC  122 (299)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEeHhhH
Confidence            57999987653

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=90.58  E-value=0.28  Score=47.98  Aligned_cols=39  Identities=26%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172           97 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  137 (658)
Q Consensus        97 ~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a  137 (658)
                      ..+++++.|+.|||+++.|..|+.+++-|  ++.-++.|+.
T Consensus       162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~  200 (201)
T 3k9o_A          162 EYTKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS  200 (201)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence            36889999999999999999999999775  5677787775

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=90.56  E-value=0.47  Score=47.70  Aligned_cols=51  Identities=14%  Similarity=0.173  Sum_probs=38.8

Q ss_pred             cccccccCCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHH
Q 006172          515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW  568 (658)
Q Consensus       515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~  568 (658)
                      ++.|......+.+|||+-||.|.+.+.+.+.  +.   .++++|+++......+.+
T Consensus        37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred             HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence            4445444345689999999999999998876  43   478999999987776654

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=90.41  E-value=0.28  Score=40.69  Aligned_cols=43  Identities=16%  Similarity=-0.006  Sum_probs=35.1

Q ss_pred             chhHHHHHHHHhcCCChHHH-HHHHHHhCCCCchHHHHHHHHHHhh
Q 006172           96 GLHIEKRASLLMMNFSVNEV-DFALDKLGKDAPVYELVDFITAAQI  140 (658)
Q Consensus        96 s~~~~~~~~lv~MGF~eeev-~~Ai~~~G~d~~i~~L~d~I~a~q~  140 (658)
                      ..+...+.+|+.|||...+. .+|+..++-+  |+.-||.|+..+.
T Consensus        17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~~   60 (67)
T 2dna_A           17 VRFSKEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQG   60 (67)
T ss_dssp             HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence            44677999999999976655 9999998855  6899999998743

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=90.38  E-value=0.43  Score=47.83  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+.+||||=||.|.+.+.|.+.. .+---+++||+++......+......+.. ...++.+|+.++..          
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence            3567899999999999999887642 11113689999998877766654433221 22245678876642          


Q ss_pred             CCccEEEecC
Q 006172          600 GSIDFVICQN  609 (658)
Q Consensus       600 g~~DLVIGGp  609 (658)
                      +++|+|+...
T Consensus       138 ~~~d~v~~~~  147 (261)
T 4gek_A          138 ENASMVVLNF  147 (261)
T ss_dssp             CSEEEEEEES
T ss_pred             cccccceeee
Confidence            4688888654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=90.23  E-value=0.03  Score=55.08  Aligned_cols=77  Identities=14%  Similarity=0.040  Sum_probs=51.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+.||.|++...+.+.|.   -++++|+++......+....  ......++.+|+.++...       ..+.| 
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f-   95 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY-   95 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence            457899999999999999988884   47899999987554433221  111223556777765421       01356 


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +|++-+|...
T Consensus        96 ~vv~n~Py~~  105 (245)
T 1yub_A           96 KIVGNIPYHL  105 (245)
T ss_dssp             EEEEECCSSS
T ss_pred             EEEEeCCccc
Confidence            7888887654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=90.21  E-value=0.25  Score=48.12  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             CCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172          525 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.+|||+-||.|..++.|-++ +-. ..++++|+++...+..+.++...+..  ...++.+|..++-.    .+  ..+.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~  129 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS  129 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence            358999999999999988764 211 24789999999998888888654322  12234455443211    11  1267


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+-..+...
T Consensus       130 fD~V~~d~~~~~  141 (221)
T 3dr5_A          130 YQLVFGQVSPMD  141 (221)
T ss_dssp             EEEEEECCCTTT
T ss_pred             cCeEEEcCcHHH
Confidence            999987655443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=89.99  E-value=0.33  Score=48.29  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=53.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      ..+.+|||+-||.|.+...|.+.   |.   .++++|+++......+......+ ....+..+|+.++..         .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~   87 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N   87 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence            35689999999999999988776   44   36889999998887776543321 123356678776542         1


Q ss_pred             CCccEEEecCC
Q 006172          600 GSIDFVICQNS  610 (658)
Q Consensus       600 g~~DLVIGGpP  610 (658)
                      +.||+|+....
T Consensus        88 ~~fD~v~~~~~   98 (284)
T 3gu3_A           88 DKYDIAICHAF   98 (284)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEEECCh
Confidence            47999987653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=89.85  E-value=0.55  Score=48.31  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|.+++.+.++|.  .-++++|+++ .....+......+... ..++.+|+.++..        ..+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~  106 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--------PFPKV  106 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SSSCE
T ss_pred             CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccC--------CCCcc
Confidence            346899999999999999999986  3578999995 4444454433322211 2345677776531        12479


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+...+
T Consensus       107 D~Ivs~~~  114 (328)
T 1g6q_1          107 DIIISEWM  114 (328)
T ss_dssp             EEEEECCC
T ss_pred             cEEEEeCc
Confidence            99997654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=89.50  E-value=0.45  Score=52.20  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=50.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+-||.|.+.+.+.+.|.  .-|+++|+++ .....+......+. ....++.+|+.++..         .+.|
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f  225 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  225 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence            457899999999999999988875  3578999998 44444444333221 123355677766531         1479


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+..+|
T Consensus       226 D~Ivs~~~  233 (480)
T 3b3j_A          226 DIIISEPM  233 (480)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCc
Confidence            99997554

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=89.44  E-value=0.43  Score=48.69  Aligned_cols=81  Identities=10%  Similarity=-0.023  Sum_probs=55.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~-~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||+=||.|.++..|.+.|-+ -..++++|+|+.....++..+ .   ....++.+|+.++.-..+..  ......
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~v~~i~~D~~~~~~~~~~~--~~~~~~  115 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---ELLELHAGDALTFDFGSIAR--PGDEPS  115 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GGEEEEESCGGGCCGGGGSC--SSSSCC
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CCcEEEECChhcCChhHhcc--cccCCc
Confidence            4578999999999999999887642 011689999999988887753 1   12336789998887544310  000134


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      ..|||-.|
T Consensus       116 ~~vv~NlP  123 (279)
T 3uzu_A          116 LRIIGNLP  123 (279)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEccC
Confidence            56777776

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=89.28  E-value=0.29  Score=50.28  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=54.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      +.+.+||+|.||.|++...+.+.+ +...+.+||+|+...+..+.++...    +.....++.+|..+.    +.   ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence            455789999999999999887764 2345789999999998888876431    112223445565431    11   12


Q ss_pred             cCCccEEEecCCC
Q 006172          599 LGSIDFVICQNSV  611 (658)
Q Consensus       599 ~g~~DLVIGGpPC  611 (658)
                      .+.||+|+..+|.
T Consensus       166 ~~~fD~Ii~d~~~  178 (304)
T 2o07_A          166 QDAFDVIITDSSD  178 (304)
T ss_dssp             SSCEEEEEEECC-
T ss_pred             CCCceEEEECCCC
Confidence            3579999987664

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=89.14  E-value=0.6  Score=47.75  Aligned_cols=82  Identities=24%  Similarity=0.260  Sum_probs=53.2

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc------CC-----CCCccccccccccChhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK  591 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~------n~-----~g~l~~~~DI~~Lt~~~  591 (658)
                      .+.+|||+.||.|.+...+.++ |-. ..++++|+++.+....+.+....      |+     ....+..+|+.++.. .
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~  182 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D  182 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence            4578999999999999998886 532 24789999999888777765431      11     122345677765531 1


Q ss_pred             HHHhhhccCCccEEEecCCCC
Q 006172          592 FESLIHKLGSIDFVICQNSVP  612 (658)
Q Consensus       592 Ie~l~~~~g~~DLVIGGpPCQ  612 (658)
                      +.     .+.||+|+...|+.
T Consensus       183 ~~-----~~~fD~V~~~~~~~  198 (336)
T 2b25_A          183 IK-----SLTFDAVALDMLNP  198 (336)
T ss_dssp             ----------EEEEEECSSST
T ss_pred             cC-----CCCeeEEEECCCCH
Confidence            11     14699999776654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=89.01  E-value=0.5  Score=43.53  Aligned_cols=77  Identities=12%  Similarity=0.087  Sum_probs=46.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCc-------eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccc-cccccccChh-hH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF  592 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~-------~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~-~~DI~~Lt~~-~I  592 (658)
                      +.+.+||||-||.|++...+.+. |-.       -..++++|+++.+           ......++ .+|+.+.... .+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence            34679999999999999988776 421       0147899999842           01122345 6677654321 11


Q ss_pred             HHhhhccCCccEEEecCCC
Q 006172          593 ESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       593 e~l~~~~g~~DLVIGGpPC  611 (658)
                      .... ..+.||+|+...++
T Consensus        90 ~~~~-~~~~fD~V~~~~~~  107 (196)
T 2nyu_A           90 LEVL-PGRRADVILSDMAP  107 (196)
T ss_dssp             HHHS-GGGCEEEEEECCCC
T ss_pred             HHhc-CCCCCcEEEeCCCC
Confidence            1111 11479999976543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=88.93  E-value=0.17  Score=50.76  Aligned_cols=74  Identities=18%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      |..+.+.+-+||||=||.|-+...|...|.+   |++||+++...+..+      .+++..++.+|+.++.-        
T Consensus        33 l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~--------   95 (257)
T 4hg2_A           33 LGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL--------   95 (257)
T ss_dssp             HHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC--------
T ss_pred             HHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc--------
Confidence            4444566678999999999999999999864   689999998654322      12333455667665542        


Q ss_pred             ccCCccEEEec
Q 006172          598 KLGSIDFVICQ  608 (658)
Q Consensus       598 ~~g~~DLVIGG  608 (658)
                      .-+.||+|+.+
T Consensus        96 ~~~sfD~v~~~  106 (257)
T 4hg2_A           96 PPASVDVAIAA  106 (257)
T ss_dssp             CSSCEEEEEEC
T ss_pred             cCCcccEEEEe
Confidence            12579999874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=88.91  E-value=0.57  Score=50.10  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +-+|||+=||.|-+++-..++|-.  -|++||.++.+..+ +..-..++... ..++.+|+.++..         ...+|
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D  151 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVD  151 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence            347999999999999999999974  58899999754322 22222222211 2245677776642         24799


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +||.
T Consensus       152 vivs  155 (376)
T 4hc4_A          152 AIVS  155 (376)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9984

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=88.66  E-value=1.4  Score=46.93  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~-l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+.+|||+.||.||=+..+-.++-. ..++|+|+++.-.+.++.+-........ ....-.|...+...+...  ..+.|
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~~f  224 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGDTY  224 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STTCE
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccccC
Confidence            4678999999999999988887753 4688999999988877765543211100 000112333333333221  23579


Q ss_pred             cEEEecCCCCCc
Q 006172          603 DFVICQNSVPQI  614 (658)
Q Consensus       603 DLVIGGpPCQ~F  614 (658)
                      |.|+-=+||.+-
T Consensus       225 D~VLlDaPCSg~  236 (359)
T 4fzv_A          225 DRVLVDVPCTTD  236 (359)
T ss_dssp             EEEEEECCCCCH
T ss_pred             CEEEECCccCCC
Confidence            999999999873

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=88.49  E-value=0.45  Score=48.13  Aligned_cols=81  Identities=22%  Similarity=0.232  Sum_probs=53.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n----~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      +.+.+||+|-||.|++...+.+.. +..-+.+||+|+...+..+.++...+    .+...++.+|+.+.    +.   ..
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  148 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  148 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence            456789999999999998887663 23457899999999988887764321    11222445555432    11   11


Q ss_pred             cCCccEEEecCCC
Q 006172          599 LGSIDFVICQNSV  611 (658)
Q Consensus       599 ~g~~DLVIGGpPC  611 (658)
                      .+.+|+|+..++.
T Consensus       149 ~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          149 TNTYDVIIVDSSD  161 (283)
T ss_dssp             CSCEEEEEEECCC
T ss_pred             CCCceEEEEcCCC
Confidence            3579999986543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=88.44  E-value=0.85  Score=44.90  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+=||.|.+...+...|.   .++++|+++......+..+     +...+..+|+.++..         .+.||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD  119 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD  119 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence            457899999999999999988775   4789999999877766543     223356777776542         14689


Q ss_pred             EEEecCCC
Q 006172          604 FVICQNSV  611 (658)
Q Consensus       604 LVIGGpPC  611 (658)
                      +|+....-
T Consensus       120 ~v~~~~~l  127 (279)
T 3ccf_A          120 AVFSNAML  127 (279)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcchh
Confidence            88876543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=88.44  E-value=0.74  Score=44.44  Aligned_cols=49  Identities=10%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  572 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~  572 (658)
                      .+.+|||+-||.|.....+.+..-+-..++++|+++......+.++...
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN  108 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999988876210124789999999988888776543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=88.35  E-value=0.82  Score=45.24  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=50.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+.+|||+-||.|.+...|.+. |.+   ++++|+++......+......+.. ...++.+|+.++..        ..+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~  149 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN  149 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCE---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence            45679999999999999988876 763   688999999877766554332211 12345667766531        114


Q ss_pred             CccEEEecC
Q 006172          601 SIDFVICQN  609 (658)
Q Consensus       601 ~~DLVIGGp  609 (658)
                      .||+|+...
T Consensus       150 ~fD~v~~~~  158 (297)
T 2o57_A          150 SYDFIWSQD  158 (297)
T ss_dssp             CEEEEEEES
T ss_pred             CEeEEEecc
Confidence            678777543

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=88.01  E-value=0.69  Score=41.69  Aligned_cols=39  Identities=21%  Similarity=0.130  Sum_probs=33.0

Q ss_pred             hHHHHHHHHhcCCCh-HHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        98 ~~~~~~~lv~MGF~e-eev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      ..+++..|+.|||+. +.+.+|+.+++-+  ++.-||+|+..
T Consensus        66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~  105 (108)
T 2cwb_A           66 WQPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG  105 (108)
T ss_dssp             THHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence            567899999999965 7999999998855  68889999864

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=87.93  E-value=0.48  Score=37.93  Aligned_cols=39  Identities=15%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   53 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a   53 (658)
                      --|..|++|||+.+-|.+|+.--. +|.+.--++||.+-.
T Consensus         9 ~~Ia~L~smGfsr~da~~AL~ia~-Ndv~~AtNiLlEf~~   47 (56)
T 2juj_A            9 SEIENLMSQGYSYQDIQKALVIAQ-NNIEMAKNILREFVS   47 (56)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHTT-TCSHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhc-ccHHHHHHHHHHHHc
Confidence            367999999999999999998755 488888888887654

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1

Probab=87.84  E-value=0.88  Score=36.89  Aligned_cols=39  Identities=15%  Similarity=0.125  Sum_probs=31.2

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT  136 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~---G~d~~i~~L~d~I~  136 (658)
                      ..+.+..|+.+||++.|+.+|+.++   .++.++++++-.-|
T Consensus        17 ~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL   58 (62)
T 1ixs_A           17 AEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL   58 (62)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            5678999999999999999999997   44556677665443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=87.78  E-value=1.4  Score=42.87  Aligned_cols=79  Identities=23%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+-||.|.+...+.+. |.   .++++|+++......+......+.. ...+..+|+.++..        ..+.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  129 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS  129 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence            4679999999999999888764 54   4788999999887777655433221 12345677766531        1247


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+....-.-
T Consensus       130 fD~v~~~~~l~~  141 (273)
T 3bus_A          130 FDAVWALESLHH  141 (273)
T ss_dssp             EEEEEEESCTTT
T ss_pred             ccEEEEechhhh
Confidence            999987654443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=87.72  E-value=0.73  Score=44.93  Aligned_cols=71  Identities=13%  Similarity=0.103  Sum_probs=49.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+.+|||+-||.|.+...+.+.  |.   .++++|+++...+..+...     ....+...|+.++..        ..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~  147 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT  147 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence            35678999999999999888886  54   3788999999877766532     122345667665531        114


Q ss_pred             CccEEEecC
Q 006172          601 SIDFVICQN  609 (658)
Q Consensus       601 ~~DLVIGGp  609 (658)
                      .||+|+...
T Consensus       148 ~fD~v~~~~  156 (269)
T 1p91_A          148 SMDAIIRIY  156 (269)
T ss_dssp             CEEEEEEES
T ss_pred             ceeEEEEeC
Confidence            688887543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=87.71  E-value=1.1  Score=44.03  Aligned_cols=76  Identities=20%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC----CCCccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~----~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|||+-||.|.+...|...|.+   ++++|+++......+........    ....+..+|+.++..+    + ...
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence            4578999999999999999999973   68999999988776653211111    0111234555443211    0 122


Q ss_pred             CCccEEEe
Q 006172          600 GSIDFVIC  607 (658)
Q Consensus       600 g~~DLVIG  607 (658)
                      +.||+|+.
T Consensus       129 ~~fD~V~~  136 (293)
T 3thr_A          129 DGFDAVIC  136 (293)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            67999986

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=87.66  E-value=0.48  Score=48.68  Aligned_cols=81  Identities=17%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      +.+.+||+|-||.|++...+.+.. +..-+.+||+|+...+..+.++...+     .+...++.+|+.+.    +.   .
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~  147 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LE---R  147 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HH---H
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HH---h
Confidence            455789999999999998887752 22457899999999888887764311     12223455666532    11   1


Q ss_pred             ccCCccEEEecCCC
Q 006172          598 KLGSIDFVICQNSV  611 (658)
Q Consensus       598 ~~g~~DLVIGGpPC  611 (658)
                      ..+.+|+|+..+|.
T Consensus       148 ~~~~fD~Ii~d~~~  161 (314)
T 1uir_A          148 TEERYDVVIIDLTD  161 (314)
T ss_dssp             CCCCEEEEEEECCC
T ss_pred             cCCCccEEEECCCC
Confidence            23579999987664

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=87.60  E-value=0.5  Score=48.29  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      +.+.+||++-||.|++...+.+.. ....+++||+|+...+..+.++...    ......++.+|+.++...      ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~------~~  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ------TP  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS------SC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh------cc
Confidence            456799999999999999888763 2345789999999988888765311    111222445565432110      01


Q ss_pred             cCCccEEEecCCC
Q 006172          599 LGSIDFVICQNSV  611 (658)
Q Consensus       599 ~g~~DLVIGGpPC  611 (658)
                      .+.||+|+...|.
T Consensus       167 ~~~fDvIi~d~~~  179 (304)
T 3bwc_A          167 DNTYDVVIIDTTD  179 (304)
T ss_dssp             TTCEEEEEEECC-
T ss_pred             CCceeEEEECCCC
Confidence            3579999986543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=87.55  E-value=0.22  Score=51.65  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=57.7

Q ss_pred             hhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006172          511 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  590 (658)
Q Consensus       511 i~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~  590 (658)
                      +...|++++.+  ++-.+||||+|.|.+.+-+-+ |.  .-++.||.++.+.++++.+....  ....++..|...    
T Consensus        80 l~~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~----  148 (283)
T 2oo3_A           80 FLEYISVIKQI--NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS----  148 (283)
T ss_dssp             GHHHHHHHHHH--SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred             HHHHHHHHHHh--cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence            45566777763  456799999999998766666 33  45788999999999998765321  112233444321    


Q ss_pred             hHHHhhhccCCccEEEecCCC
Q 006172          591 KFESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       591 ~Ie~l~~~~g~~DLVIGGpPC  611 (658)
                      -+..+......+|||.-=||=
T Consensus       149 ~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A          149 KLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             HHHHHCSCTTSCEEEEECCCC
T ss_pred             HHHHhcCCCCCccEEEECCCC
Confidence            122222222369999998884

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=87.39  E-value=0.5  Score=48.91  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      +.+.+|||+-||.|++...+.+.. +...+.+||+|+.+.+..+.++...    +.+...++.+|+.+.    +.   ..
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence            355789999999999998887762 1245789999999998888765431    011222345555431    11   11


Q ss_pred             cCCccEEEecCC
Q 006172          599 LGSIDFVICQNS  610 (658)
Q Consensus       599 ~g~~DLVIGGpP  610 (658)
                      .+.||+|+..++
T Consensus       187 ~~~fDvIi~d~~  198 (321)
T 2pt6_A          187 TNTYDVIIVDSS  198 (321)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCCceEEEECCc
Confidence            357999998664

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=87.34  E-value=0.9  Score=42.06  Aligned_cols=55  Identities=9%  Similarity=-0.060  Sum_probs=36.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  588 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt  588 (658)
                      +.+.+||||=||.|+++..+.+. +-.-..++++|+++.+           ...+..++.+|+.++.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchh
Confidence            45678999999999999988764 2001247899999842           1123335567777654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=87.29  E-value=0.67  Score=45.53  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh------cCCCCCccccccccccChhhHHHhhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~------~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      .+.+|||+=||.|.+.+.|.+..=. ..+++||+++......+.....      .+.....++.+|+.+.    +.... 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~-  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF-  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence            4578999999999999988776311 2578999999876655433211      1112223456777542    11111 


Q ss_pred             ccCCccEEEecCCCCCc
Q 006172          598 KLGSIDFVICQNSVPQI  614 (658)
Q Consensus       598 ~~g~~DLVIGGpPCQ~F  614 (658)
                      ..+.+|+|+-.+|..-+
T Consensus       120 ~~~~~D~v~~~~~dp~~  136 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHF  136 (235)
T ss_dssp             CTTCEEEEEEESCC---
T ss_pred             CCcCeeEEEEeCCCchh
Confidence            23579999877765443

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=87.27  E-value=1.6  Score=51.43  Aligned_cols=104  Identities=17%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCccc--ccchhhhHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITL  175 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~--~~~~m~k~~  175 (658)
                      ..+.+..|+.||||+.-..+|+..-|..+. +.-++.|+++..-...+.  +  ... ...........  .-..-+.+.
T Consensus       652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~-e~a~~wl~~hmdd~di~~--p--~~~-~~~~~~~s~~~~~~~~~~e~i~  725 (854)
T 3ihp_A          652 DESVIIQLVEMGFPMDACRKAVYYTGNSGA-EAAMNWVMSHMDDPDFAN--P--LIL-PGSSGPGSTSAAADPPPEDCVT  725 (854)
T ss_dssp             -CHHHHHHHHHTCCHHHHHHHHHHTTSCCH-HHHHHHHHHHTTSCGGGS--C--CCC-C--------------CCHHHHH
T ss_pred             CHHHHHHHHhcCCCHHHHHHHHhhcCCCch-HHHhHHHhhccCcccccc--c--ccc-cccccccccccccCCCCHHHHH
Confidence            346789999999999999999999988765 788888887632211110  0  000 00000000000  001235677


Q ss_pred             HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006172          176 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  209 (658)
Q Consensus       176 ~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~A  209 (658)
                      .|..|||+.+.|..|+..++-  .++.-+|.|+.
T Consensus       726 ~l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs  757 (854)
T 3ihp_A          726 TIVSMGFSRDQALKALRATNN--SLERAVDWIFS  757 (854)
T ss_dssp             HHHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhc
Confidence            899999999999999999975  57777787776

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=87.15  E-value=1  Score=43.96  Aligned_cols=83  Identities=14%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  598 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~-  598 (658)
                      .+-+|||+-||.|+..+.+.++   +.   .++++|+++......+.+|...+... ..++.+|..++    ++.+... 
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  142 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ  142 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence            3468999999999999888775   43   47899999999998888886543211 12344555432    1222111 


Q ss_pred             --cCCccEEEecCCCCC
Q 006172          599 --LGSIDFVICQNSVPQ  613 (658)
Q Consensus       599 --~g~~DLVIGGpPCQ~  613 (658)
                        .+.||+|+-..+|..
T Consensus       143 ~~~~~fD~I~~d~~~~~  159 (237)
T 3c3y_A          143 ESEGSYDFGFVDADKPN  159 (237)
T ss_dssp             TCTTCEEEEEECSCGGG
T ss_pred             CCCCCcCEEEECCchHH
Confidence              357999997766653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=86.84  E-value=1.4  Score=39.61  Aligned_cols=69  Identities=14%  Similarity=0.101  Sum_probs=48.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      ..+.+|||+-||.|.+...+.+.+.   .++++|+++......+..     .....+..+| ..+          ..+.+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~----------~~~~~   76 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI----------PDNSV   76 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS----------CTTCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC----------CCCce
Confidence            3567899999999999999999883   578999999988777654     1122234444 111          12579


Q ss_pred             cEEEecCC
Q 006172          603 DFVICQNS  610 (658)
Q Consensus       603 DLVIGGpP  610 (658)
                      |+|+....
T Consensus        77 D~v~~~~~   84 (170)
T 3i9f_A           77 DFILFANS   84 (170)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEccc
Confidence            99986543

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=86.81  E-value=0.72  Score=35.65  Aligned_cols=37  Identities=16%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      -|..+++|||+.+-|.||+.--.- |.+.--+.|+.+-
T Consensus         7 ~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~   43 (46)
T 2oo9_A            7 EIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA   43 (46)
T ss_dssp             HHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence            468899999999999999987654 8888778887754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=86.46  E-value=1.1  Score=42.17  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             CCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006172          525 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+|||+-||.|.....+.++   |.   .++++|+++...+..+.++...+... ..++.+|..++    +.   ...+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~  126 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD  126 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence            468999999999999998876   43   47899999999888887765432111 11334444321    11   1124


Q ss_pred             CccEEEecCCCCC
Q 006172          601 SIDFVICQNSVPQ  613 (658)
Q Consensus       601 ~~DLVIGGpPCQ~  613 (658)
                       ||+|+...++..
T Consensus       127 -fD~v~~~~~~~~  138 (210)
T 3c3p_A          127 -IDILFMDCDVFN  138 (210)
T ss_dssp             -EEEEEEETTTSC
T ss_pred             -CCEEEEcCChhh
Confidence             999987766543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=86.40  E-value=0.67  Score=47.98  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n----~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      +.+.+||+|-||.|++...+.+.. +...+.+||+|+...+..+.++...+    .....++.+|+.+.    +.   ..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH  178 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence            355789999999999998887762 23457899999999988888764321    11222345555431    11   12


Q ss_pred             cCCccEEEecCC
Q 006172          599 LGSIDFVICQNS  610 (658)
Q Consensus       599 ~g~~DLVIGGpP  610 (658)
                      .+.||+|+..+|
T Consensus       179 ~~~fD~Ii~d~~  190 (314)
T 2b2c_A          179 KNEFDVIITDSS  190 (314)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCceEEEEcCC
Confidence            357999997664

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=86.30  E-value=0.59  Score=38.78  Aligned_cols=37  Identities=11%  Similarity=0.072  Sum_probs=31.7

Q ss_pred             hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      -+.++..|||. ...+.+||+..+. |++.-+|+|+...
T Consensus        22 ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~   59 (67)
T 2dna_A           22 EMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQ   59 (67)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence            56899999995 5577999999985 9999999999843

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=86.27  E-value=0.97  Score=45.33  Aligned_cols=82  Identities=12%  Similarity=0.008  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+=||.|.++. +.+.+ + .-++++|+|+.....++......  ....++.+|+.++.-..+.   ...+..+
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~---~~~~~~~   92 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELA---EKMGQPL   92 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHH---HHHTSCE
T ss_pred             CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhh---cccCCce
Confidence            45689999999999999 87632 2 12789999999988877643211  1234678999888754331   0013468


Q ss_pred             EEEecCCCCC
Q 006172          604 FVICQNSVPQ  613 (658)
Q Consensus       604 LVIGGpPCQ~  613 (658)
                      +|+|..|=+-
T Consensus        93 ~vvsNlPY~i  102 (252)
T 1qyr_A           93 RVFGNLPYNI  102 (252)
T ss_dssp             EEEEECCTTT
T ss_pred             EEEECCCCCc
Confidence            9999998543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=86.04  E-value=1.9  Score=44.10  Aligned_cols=47  Identities=9%  Similarity=0.013  Sum_probs=36.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  571 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~  571 (658)
                      |.+.+||||=||.|+....+...|.  .-|+++|+++.+.+.-+..+..
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~   93 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK   93 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence            5678999999999987666666664  2478999999998887776543

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=85.91  E-value=1.1  Score=35.87  Aligned_cols=39  Identities=18%  Similarity=0.099  Sum_probs=32.4

Q ss_pred             hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           98 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        98 ~~~~~~~lv~MGF-~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      +..++..|..||| .++.-..|+.++|-+  ++..|+.|+..
T Consensus         9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gn--v~~aI~~Ll~~   48 (54)
T 2cp8_A            9 TAALMAHLFEMGFCDRQLNLRLLKKHNYN--ILQVVTELLQL   48 (54)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHTTTTTC--HHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhc
Confidence            5568999999999 788888899988765  67888888875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=85.86  E-value=1.2  Score=43.16  Aligned_cols=84  Identities=13%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS  601 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~--g~  601 (658)
                      +.+|||+-||.|...+.+.++--+-..++++|+++...+..+.++...+... ..++.+|+.+.    +..+....  +.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~  148 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE  148 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence            4589999999999999888751100247899999999888888775443211 12334454321    22221111  67


Q ss_pred             ccEEEecCCCC
Q 006172          602 IDFVICQNSVP  612 (658)
Q Consensus       602 ~DLVIGGpPCQ  612 (658)
                      ||+|+-..++.
T Consensus       149 fD~V~~d~~~~  159 (232)
T 3cbg_A          149 FDLIFIDADKR  159 (232)
T ss_dssp             EEEEEECSCGG
T ss_pred             cCEEEECCCHH
Confidence            99998766543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=85.78  E-value=0.4  Score=46.95  Aligned_cols=73  Identities=23%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      +.+.+|||+=||.|.+...|.+.|.+   ++++|+++......+.      .....++.+|+.++..        ..+.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f   95 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV   95 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence            35689999999999999999988864   6899999976433211      1123355677766542        12579


Q ss_pred             cEEEecCCCC
Q 006172          603 DFVICQNSVP  612 (658)
Q Consensus       603 DLVIGGpPCQ  612 (658)
                      |+|+......
T Consensus        96 D~v~~~~~l~  105 (261)
T 3ege_A           96 DGVISILAIH  105 (261)
T ss_dssp             SEEEEESCGG
T ss_pred             eEEEEcchHh
Confidence            9999766543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=85.42  E-value=0.79  Score=45.23  Aligned_cols=83  Identities=10%  Similarity=0.099  Sum_probs=55.2

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  598 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~-  598 (658)
                      .+-+|||+-||.|...+.|.++   |.   .++++|+++......+.+|...+... ..++.+|..++    +..+... 
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  151 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE  151 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence            3468999999999999988775   43   47899999999888888876543211 12344554432    1212111 


Q ss_pred             --cCCccEEEecCCCCC
Q 006172          599 --LGSIDFVICQNSVPQ  613 (658)
Q Consensus       599 --~g~~DLVIGGpPCQ~  613 (658)
                        .+.||+|+-..++..
T Consensus       152 ~~~~~fD~V~~d~~~~~  168 (247)
T 1sui_A          152 KNHGSYDFIFVDADKDN  168 (247)
T ss_dssp             GGTTCBSEEEECSCSTT
T ss_pred             CCCCCEEEEEEcCchHH
Confidence              367999998776654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=85.26  E-value=0.63  Score=43.93  Aligned_cols=40  Identities=15%  Similarity=0.152  Sum_probs=31.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHH
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI  564 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t  564 (658)
                      .+.+|||+-||.|.+...|.+.+-. .-++++|+++.....
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEK   66 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHH
Confidence            5678999999999999999887311 347899999985543

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}

Probab=85.22  E-value=2.8  Score=41.35  Aligned_cols=128  Identities=9%  Similarity=0.096  Sum_probs=76.6

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhc-cCCCCCCCccCcccCCCCCCCCCCccCCCCCCCC
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQ-ESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE   89 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~-~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e   89 (658)
                      -|+..|...||+++.|+.||...   |==|-....+..+....-. .-|                               
T Consensus        80 EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G-------------------------------  128 (221)
T 3d5l_A           80 DIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKG-------------------------------  128 (221)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCC-------------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccc-------------------------------
Confidence            37888888899999888888755   4446667777777655431 110                               


Q ss_pred             CCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172           90 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG  169 (658)
Q Consensus        90 ~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~  169 (658)
                              .-.....|..-|++.+.|..|++++-++.. .+++.-++.-... ...   .               .+...
T Consensus       129 --------~~~I~~eL~~KGI~~~~I~~al~~~~~~~e-~e~a~~l~~Kk~~-~~~---~---------------~~~~~  180 (221)
T 3d5l_A          129 --------PGIIRQHLRQKGIGESDIDDALTQFTPEVQ-AELAKKLALKLFR-RYR---N---------------QPERR  180 (221)
T ss_dssp             --------HHHHHHHHHHTTCCHHHHHHHGGGCCHHHH-HHHHHHHHHHHHH-HTT---T---------------SCHHH
T ss_pred             --------HHHHHHHHHHcCCCHHHHHHHHHhCCHHHH-HHHHHHHHHHHHh-hcc---C---------------CChHH
Confidence                    334567899999999999999998733221 1122222221111 100   0               00122


Q ss_pred             hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 006172          170 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI  200 (658)
Q Consensus       170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~da~i  200 (658)
                      ...|+. +|..=||+-+.+..|+..+..+...
T Consensus       181 ~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~~~  212 (221)
T 3d5l_A          181 REQKVQQGLTTKGFSSSVYEMIKDEVVPQPDL  212 (221)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhccchhhh
Confidence            345665 9999999999999998877555433

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=85.00  E-value=0.76  Score=44.17  Aligned_cols=45  Identities=16%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      .+.+|||+-||.|.+...+.+.|.  ..++++|+++.+....+.+..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence            457899999999999988888886  357899999999888877654

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=84.84  E-value=2  Score=43.00  Aligned_cols=145  Identities=20%  Similarity=0.188  Sum_probs=78.7

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHH----hCCC---CHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCC
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEE----KGQD---NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQ   85 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe----~Ge~---d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~   85 (658)
                      |.+++.|.+||++...|.|...-    .+-+   +....+++|.   .+|=+...    .+...    ..+ |.      
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~---~lG~~~~~----i~~il----~~~-P~------   67 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLK---DVGIEDNQ----LGAFL----TKN-HA------   67 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHH---HHTCCGGG----HHHHH----HHC-TT------
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHH---HcCCCHHH----HHHHH----HhC-Ch------
Confidence            56889999999999999888777    5654   3445566663   34422211    00000    000 01      


Q ss_pred             CCCCCCccccchhHHHHHHHHhcCCChHHHHHHHHHhCC--CCc---hHHHHHHHH-HHhhhcc--------cccCCCCC
Q 006172           86 PKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK--DAP---VYELVDFIT-AAQISEN--------FEKETDDA  151 (658)
Q Consensus        86 ~~~e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~--d~~---i~~L~d~I~-a~q~a~~--------~~~e~~D~  151 (658)
                          ....+......++..|...|++.++|.+++.+|-.  ..+   +..-++++- .....++        .+.--.  
T Consensus        68 ----lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~--  141 (270)
T 3m66_A           68 ----IFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT--  141 (270)
T ss_dssp             ----GGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT--
T ss_pred             ----hhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee--
Confidence                10101111445778899999999999999988643  112   333344442 1111110        010000  


Q ss_pred             CCCCCCCCCCCCcccccchhhhHHHH-HhcCCCHHHHHHHHHhh
Q 006172          152 PHDNDGTNEDKSDETLYGTMEITLQL-LEMGFSENQVSLAIEKF  194 (658)
Q Consensus       152 ~~~~d~~~ed~~~e~~~~~m~k~~~L-~~MGf~e~Eas~AI~rc  194 (658)
                                .+.+   ....|+..| .+|||+++|+..++.+|
T Consensus       142 ----------~s~e---~~~~~v~~l~~~~G~s~~ei~~~v~~~  172 (270)
T 3m66_A          142 ----------GSLE---PVKENMKVYRLELGFKHNEIQHMITRI  172 (270)
T ss_dssp             ----------SCSH---HHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred             ----------echH---HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence                      0000   012444544 59999999999999887

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=84.55  E-value=12  Score=35.04  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=73.9

Q ss_pred             hhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN   91 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~   91 (658)
                      |+..|...||+++.|..||...   |==|-....+..+....- + +                                 
T Consensus        37 L~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~-~---------------------------------   81 (162)
T 3dfg_A           37 LNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-S-G---------------------------------   81 (162)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-T-T---------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-c-c---------------------------------
Confidence            7777888888888888887766   444555555655554332 0 0                                 


Q ss_pred             ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchh
Q 006172           92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM  171 (658)
Q Consensus        92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m  171 (658)
                         -+ .-.....|..-|++.+.|..|++++.++ - .+++--++.-+.....   ..           +      ....
T Consensus        82 ---~G-~~~I~~eL~~KGI~~~~I~~al~~~~~d-e-~e~a~~l~~Kk~~~~~---~~-----------~------~~~k  135 (162)
T 3dfg_A           82 ---YG-PLHIRAELGTHGLDSDAVSAAMATFEGD-W-TENALDLIRRRFGEDG---PV-----------D------LAQR  135 (162)
T ss_dssp             ---CC-HHHHHHHHHHTTCCHHHHHHHHTTCCSC-H-HHHHHHHHHHHHCTTC---CC-----------S------HHHH
T ss_pred             ---cc-HHHHHHHHHHcCCCHHHHHHHHHhCcHh-H-HHHHHHHHHHhcCCCC---CC-----------C------HHHH
Confidence               00 3346688999999999999999998532 2 2333333322221100   00           0      1234


Q ss_pred             hhHH-HHHhcCCCHHHHHHHHHh
Q 006172          172 EITL-QLLEMGFSENQVSLAIEK  193 (658)
Q Consensus       172 ~k~~-~L~~MGf~e~Eas~AI~r  193 (658)
                      .|+. +|+.=||+.+.+..||..
T Consensus       136 ~K~~~~L~rrGF~~~~I~~~l~~  158 (162)
T 3dfg_A          136 RKAADLLARRGFDGNSIRLATRF  158 (162)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHhc
Confidence            5665 999999999999988764

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=84.52  E-value=0.67  Score=48.44  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=53.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      +.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++...    +.....++.+|+.+.    +..+  .
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~  191 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A  191 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence            455789999999999999888762 2245789999999998888776431    111223455665432    1110  1


Q ss_pred             cCCccEEEecCC
Q 006172          599 LGSIDFVICQNS  610 (658)
Q Consensus       599 ~g~~DLVIGGpP  610 (658)
                      .+.||+|+.-++
T Consensus       192 ~~~fDlIi~d~~  203 (334)
T 1xj5_A          192 EGSYDAVIVDSS  203 (334)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCccEEEECCC
Confidence            257999997543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=84.31  E-value=1.7  Score=47.63  Aligned_cols=81  Identities=10%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             CCCCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHh-------hhcC--CCCCccccccccccChhhH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKF  592 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~-------~~~n--~~g~l~~~~DI~~Lt~~~I  592 (658)
                      ..+-+||||=||.|.+.+.+. ..|.  .-+++||+++.+..+-+.+.       ...+  .....++.+|+.++.... 
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d-  248 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE-  248 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc-
Confidence            356789999999999998775 4565  34789999987665544321       1111  122335678988764321 


Q ss_pred             HHhhhccCCccEEEecCCC
Q 006172          593 ESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       593 e~l~~~~g~~DLVIGGpPC  611 (658)
                           .++.+|+|+..++|
T Consensus       249 -----~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          249 -----RIANTSVIFVNNFA  262 (438)
T ss_dssp             -----HHHTCSEEEECCTT
T ss_pred             -----ccCCccEEEEcccc
Confidence                 12468999987776

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=84.20  E-value=0.68  Score=48.49  Aligned_cols=78  Identities=14%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      +.++||+|=||.|++...+.+.  +.+   +..||||+...+..+.|+.........++.+|..++-    ..+  ..+.
T Consensus        89 ~~~rVLdIG~G~G~la~~la~~~p~~~---v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~  159 (317)
T 3gjy_A           89 SKLRITHLGGGACTMARYFADVYPQSR---NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPAS  159 (317)
T ss_dssp             GGCEEEEESCGGGHHHHHHHHHSTTCE---EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTC
T ss_pred             CCCEEEEEECCcCHHHHHHHHHCCCcE---EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCC
Confidence            3569999999999999888873  543   5789999999988888764321222334566665331    110  1257


Q ss_pred             ccEEEecCC
Q 006172          602 IDFVICQNS  610 (658)
Q Consensus       602 ~DLVIGGpP  610 (658)
                      ||+||...+
T Consensus       160 fDvIi~D~~  168 (317)
T 3gjy_A          160 RDVIIRDVF  168 (317)
T ss_dssp             EEEEEECCS
T ss_pred             CCEEEECCC
Confidence            999997543

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=83.86  E-value=1.1  Score=40.48  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      -+..+.+|||. ++.+.+||+..+. |++.-||+|+.
T Consensus        69 qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~  104 (108)
T 2cwb_A           69 QLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFA  104 (108)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence            56999999995 5799999999995 99999999996

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=83.63  E-value=0.44  Score=46.90  Aligned_cols=85  Identities=13%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhc--cCC
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHK--LGS  601 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~--~g~  601 (658)
                      +-+|||+-||.|..++.|.++-=+-..++++|+++......+.++...+.. ...++.+|..++-    ..+...  .+.
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~~~~  136 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGGEHQ  136 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHCSSC
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccCCCC
Confidence            468999999999999998874100124789999998766666666544322 1224456654332    111111  368


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+|+-..++..
T Consensus       137 fD~V~~d~~~~~  148 (242)
T 3r3h_A          137 FDFIFIDADKTN  148 (242)
T ss_dssp             EEEEEEESCGGG
T ss_pred             EeEEEEcCChHH
Confidence            999987766443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=83.20  E-value=0.75  Score=43.59  Aligned_cols=70  Identities=26%  Similarity=0.310  Sum_probs=47.1

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006172          517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  596 (658)
Q Consensus       517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~  596 (658)
                      .+..+.| +.+|||+-||.|.+...+...       +++|+++...+..+..       +..+...|+.++..       
T Consensus        41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-------   98 (219)
T 1vlm_A           41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL-------   98 (219)
T ss_dssp             HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred             HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence            3444445 679999999999998877554       7899999987776542       22345667665531       


Q ss_pred             hccCCccEEEecC
Q 006172          597 HKLGSIDFVICQN  609 (658)
Q Consensus       597 ~~~g~~DLVIGGp  609 (658)
                       ..+.+|+|+...
T Consensus        99 -~~~~fD~v~~~~  110 (219)
T 1vlm_A           99 -KDESFDFALMVT  110 (219)
T ss_dssp             -CTTCEEEEEEES
T ss_pred             -CCCCeeEEEEcc
Confidence             124688887654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=83.01  E-value=0.73  Score=46.37  Aligned_cols=73  Identities=8%  Similarity=-0.030  Sum_probs=48.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  598 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  598 (658)
                      +++.+||++-||.|++...+.+.|   .-+.+||+|+...+..+.++...    ..+...++.+|..+.-          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            355789999999999988777765   35789999998877666554220    1112223445554321          


Q ss_pred             cCCccEEEecC
Q 006172          599 LGSIDFVICQN  609 (658)
Q Consensus       599 ~g~~DLVIGGp  609 (658)
                       +.+|+|+...
T Consensus       138 -~~fD~Ii~d~  147 (262)
T 2cmg_A          138 -KKYDLIFCLQ  147 (262)
T ss_dssp             -CCEEEEEESS
T ss_pred             -hhCCEEEECC
Confidence             4689998764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=82.25  E-value=1.1  Score=44.47  Aligned_cols=49  Identities=8%  Similarity=-0.048  Sum_probs=40.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  572 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~  572 (658)
                      +..-+||||=||.|-+++.+....=.. .++++|||+.+..+.+.+....
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~   96 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL   96 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence            456799999999999999998874333 6899999999999999876543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=82.15  E-value=1.2  Score=52.72  Aligned_cols=44  Identities=16%  Similarity=0.174  Sum_probs=36.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  567 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~  567 (658)
                      .+.+||||-||.|.+...|.+.|-+..-++++|+++.+.+..+.
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe  764 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK  764 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence            56789999999999999999988222347899999998877655

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=82.00  E-value=2.5  Score=43.93  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=48.7

Q ss_pred             CCCCcccccCCCCChHH-HHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGls-lGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +.+.+|||+=||.||++ +-+.+ .|.   .|+++|+++.....-+.+....+.....++.+|+.++.          .+
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~  187 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL  187 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence            45789999999999876 33333 465   37899999998887776654433222335567776542          25


Q ss_pred             CccEEEe
Q 006172          601 SIDFVIC  607 (658)
Q Consensus       601 ~~DLVIG  607 (658)
                      .||+|+-
T Consensus       188 ~FDvV~~  194 (298)
T 3fpf_A          188 EFDVLMV  194 (298)
T ss_dssp             CCSEEEE
T ss_pred             CcCEEEE
Confidence            7999973

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=81.78  E-value=1.7  Score=44.19  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172           97 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  137 (658)
Q Consensus        97 ~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a  137 (658)
                      ..+++++.|+.|||+++.|..|+.++|=+  ++.-++.|+.
T Consensus       214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd--~~~A~e~L~~  252 (253)
T 3e46_A          214 EYTKKIENLCAAGFDRNAVIVALSSKSWD--VETATELLLS  252 (253)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence            46889999999999999999999999875  4677777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	658
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	5e-05

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 585
           L +L ++SG+GG    L    I  + V +I+ +     + K  +  +      +  + I+
Sbjct: 3   LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIE 57

Query: 586 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 619
            +T ++F+       S D ++            +
Sbjct: 58  GITLEEFDR-----LSFDMILMSPPCQPFTRIGR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	658
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.91
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	99.91
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	98.99
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	98.81
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.93
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.84
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.82
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.74
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.72
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.65
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.64
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.62
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.55
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.54
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.42
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	97.38
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	97.19
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.16
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.91
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	96.89
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	96.88
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	96.87
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	96.83
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.79
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.76
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.62
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.58
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.57
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.44
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	96.29
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.29
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	96.26
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	96.17
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.16
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.11
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.05
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.84
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	95.73
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	95.73
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.64
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.51
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.5
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	95.39
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.27
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.23
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.95
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	94.85
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	94.84
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.73
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	94.29
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	94.23
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.04
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.85
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	93.81
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	93.5
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	93.31
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.12
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	92.28
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	92.16
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	91.47
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	91.45
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.83
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	90.8
d2h00a1	250	Methyltransferase 10 domain containing protein MET	90.52
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	90.46
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	90.45
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	89.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	89.52
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	88.52
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	88.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	88.37
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.94
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	86.57
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	86.45
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	85.59
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	84.93
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	84.75
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	84.63
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	84.62
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	84.53
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	84.48
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	84.32
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	83.03
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	81.87
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	81.53
d1cuka1	48	DNA helicase RuvA subunit, C-terminal domain {Esch	81.13
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	80.74
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	80.08

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.91  E-value=6.1e-25  Score=222.12  Aligned_cols=112  Identities=19%  Similarity=0.307  Sum_probs=97.1

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      +++...++|+||||||||||+++||+++||  ++++++|+|+.|++||+.+|..+       ..+||++++.+.+     
T Consensus         4 ~~~~~~~~lrv~~lFsG~Gg~~~gl~~aG~--~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~-----   69 (327)
T d2c7pa1           4 IKDKQLTGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI-----   69 (327)
T ss_dssp             CSSCTTTTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS-----
T ss_pred             cccccCCCCeEEEECccccHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhc-----
Confidence            355566889999999999999999999998  56899999999999999987532       2589999987654     


Q ss_pred             ccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          598 KLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       598 ~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                        .++|||+||||||+||.+|+            +.|.+|+|+.||++|+|+|+++||..
T Consensus        70 --~~~Dll~ggpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~kP~~  115 (327)
T d2c7pa1          70 --PDHDILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             --CCCSEEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             --ceeeeeecccccchhhhhhh------------hcCCcccchhHHHHHHHHHhccCCcE
Confidence              57999999999999998864            35688999999999999999999864

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=99.91  E-value=4.1e-25  Score=220.61  Aligned_cols=105  Identities=17%  Similarity=0.346  Sum_probs=92.6

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  605 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  605 (658)
                      |+||||||||||+++||+++||  ++++++|+|+.|+++|+++|.      ..++.+||++++.+++       +.+|||
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~--~~~~a~e~d~~a~~~~~~N~~------~~~~~~Di~~~~~~~~-------~~~dll   65 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI   65 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC--EEEEEEECCHHHHHHHHHHCC------SEEEESCTTTSCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCCccCChhhCCHhHc-------ccccEE
Confidence            6899999999999999999998  578999999999999998653      2356899999988765       579999


Q ss_pred             EecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172          606 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  657 (658)
Q Consensus       606 IGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~  657 (658)
                      +||||||+||.+|+            +.|++|+|+.||++|+|+|+.+||+.
T Consensus        66 ~~g~PCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~Pk~  105 (324)
T d1dcta_          66 IGGPPCQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF  105 (324)
T ss_dssp             EECCCCTTTSSSSC------------CCCSSSHHHHHHHHHHHHHHHHCCSE
T ss_pred             eecccccccccccc------------cccccccccchHHHHHHHHHhhCCce
Confidence            99999999998764            36789999999999999999999974

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.7e-25  Score=220.31  Aligned_cols=110  Identities=16%  Similarity=0.316  Sum_probs=81.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +|+||||||||||+++||+++||.+++++++|+++.|++||+.+|.     ++.++.+||++++.+.+..     +++||
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----~~~~~~~di~~~~~~~~~~-----~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----CCCcccCchhhCCHhHcCC-----CCccE
Confidence            4899999999999999999999998999999999999999998653     3446679999999887753     47999


Q ss_pred             EEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHh--hcc
Q 006172          605 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRV--RSM  656 (658)
Q Consensus       605 VIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~v--K~~  656 (658)
                      |+||||||+||.+|+            +.|+.|+|+.||++|+|+|+.+  ||+
T Consensus        72 l~ggpPCq~fS~ag~------------~~~~~d~r~~l~~~~~~~i~~~~~kPk  113 (343)
T d1g55a_          72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEeeccccccccccc------------ccccccccccccchhhhhHhhhcCCCc
Confidence            999999999998764            3678999999999999999987  575

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=98.99  E-value=7.9e-11  Score=117.73  Aligned_cols=178  Identities=15%  Similarity=0.174  Sum_probs=106.7

Q ss_pred             cCCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-cccccccccc----ccCCCCCCcCCCCCC--
Q 006172          328 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEP--  392 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~~----~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~----hNLP~~~R~~~~p~~--  392 (658)
                      ..+|.||++|||..+-..    .+..|...|    |.++..++|+..| .||+|+|.|+    +++...+.  ..|.|  
T Consensus       110 ~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R~fivg~r~~~~~~~~--~~p~p~~  187 (327)
T d2c7pa1         110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNF--QFPKPFE  187 (327)
T ss_dssp             HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCC--CCCCCCC
T ss_pred             ccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhhhheeeeeccCcccccc--ccccccc
Confidence            468999999999998543    455555555    7899999999999 8999999987    34544442  22332  


Q ss_pred             -CCcccccccCCCc-----------------cCCCcCCCcccceecccCCchhHHHHHHHHHHhhccCCCchhhhHHHHH
Q 006172          393 -PMTIQDAIPHTKK-----------------WWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILH  454 (658)
Q Consensus       393 -p~ti~e~lp~~~~-----------------~wp~wd~r~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~il~  454 (658)
                       ..+|.|++.....                 ++.......+..++.....+..-..        ...--++.....   .
T Consensus       188 ~~~~i~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~t~~~~~---~  256 (327)
T d2c7pa1         188 LNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYS--------TRGIAITLSAYG---G  256 (327)
T ss_dssp             CCCCGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSCCEEEESTTCCTTCEEEE--------TTSCBCCCCSSC---C
T ss_pred             cccccccccccccchhhhcccccccccchhhhhcccchhhhhccccCCCCCccccc--------cccccccccccC---c
Confidence             4678887742211                 1111111112222211110000000        000000000000   0


Q ss_pred             hhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172          455 RSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  520 (658)
Q Consensus       455 ~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~  520 (658)
                      ......-.+..+++.+.|++.|+.||+|||++|+-  ..+.+++++.+||++.++++.++...++.
T Consensus       257 ~~~~~~~~~~~~~~~R~lT~rE~arLqgFPd~f~~--~~s~~~~~~~iGNAVp~~v~~~I~~~I~~  320 (327)
T d2c7pa1         257 GIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS  320 (327)
T ss_dssp             STTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             cccCCCCcccCCCcCcCCCHHHHHHhCCCCCCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence            00001112345678899999999999999999985  56899999999999999998888666543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=98.81  E-value=4.9e-10  Score=110.44  Aligned_cols=189  Identities=13%  Similarity=0.066  Sum_probs=100.0

Q ss_pred             cCCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-ccccccccccccC----CCCCCcCCCCCCCC
Q 006172          328 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNL----PTTNRFHIPPEPPM  394 (658)
Q Consensus       328 ~~~ppfF~feNV~~~~~~----~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~hNL----P~~~R~~~~p~~p~  394 (658)
                      ..+|.||++|||..+-..    .+..|-.-|    |.+...++||..| .||+|+|.||=..    +..--++.....+.
T Consensus       100 ~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~GvPQ~R~R~fiv~~r~~~~~~~~~p~~~~~~~  179 (324)
T d1dcta_         100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (324)
T ss_dssp             HHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGTCSBCCEEEEEEEEEGGGCCCCCCCCCCSSCC
T ss_pred             hhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeeeecccccCchhhceeeEeeecCCCCccccccccccccc
Confidence            468999999999877532    233333333    8899999999999 9999999997432    22211111111255


Q ss_pred             ccccccc--------CCCccCCCcCCCcccceecccCCchhHHHHHHHHHHhhccCCCc----hhhhH--------HHHH
Q 006172          395 TIQDAIP--------HTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLS----SQQQR--------DILH  454 (658)
Q Consensus       395 ti~e~lp--------~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~----~~~q~--------~il~  454 (658)
                      |+.|++.        ...+++........-+.-.... .......  .+...+....+.    ..-+.        .+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (324)
T d1dcta_         180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIG-SYSTIFM--SRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLK  256 (324)
T ss_dssp             CGGGTTGGGTTCCEECBTTTBCCGGGSSSTTCEECCC-CCCHHHH--TSCCCCCTTSCBCCCCSCGGGCCBCTTSCCCEE
T ss_pred             chhhhhhhcccCCccchhhcccccccccccchhhhcc-ccccccc--ccccccccccccccccccccccccccCCCceec
Confidence            6666652        2222222111110000000000 0000000  000000000000    00000        0000


Q ss_pred             hhcccceeee-cccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172          455 RSEKLNLVWV-GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  520 (658)
Q Consensus       455 ~c~~~nlvW~-g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~  520 (658)
                      .++..+-.+. .++.++.|+|.|+.||+|||.+|+- ...+.++++|.+||+..++++.+++..+++
T Consensus       257 ~~~~~~~~~~~~~~~~R~LT~rE~arLqgFPd~~~f-~~~s~~~~y~~iGNaV~p~v~~~I~~~I~~  322 (324)
T d1dcta_         257 VSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (324)
T ss_dssp             EETTEEECCTTTGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCcCcCCCHHHHHHHCCCCCCCEe-CCCCHHHHHeeEccCccHHHHHHHHHHHHH
Confidence            0011111111 2456789999999999999999983 135889999999999999998888877664

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.1e-10  Score=109.55  Aligned_cols=55  Identities=18%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             ecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172          464 VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  518 (658)
Q Consensus       464 ~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL  518 (658)
                      ..+.+++-|+|.|+.||+|||.+|+=..+++.++++|.+||+..+++++++++.|
T Consensus       287 ~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k~l  341 (343)
T d1g55a_         287 LLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL  341 (343)
T ss_dssp             HHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHHHh
Confidence            4566788999999999999999998777899999999999999999988877765

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.93  E-value=7.7e-06  Score=77.60  Aligned_cols=75  Identities=21%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||||||+|++.+++...|..  .|++||+|+.+.+..+.+....+. ...+...|+.++           .+.||
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~-----------~~~fD  111 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF-----------NSRVD  111 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC-----------CCCCS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh-----------CCcCc
Confidence            4578999999999999998888863  478999999999998887554322 222344555443           25799


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+.-|||.
T Consensus       112 ~Vi~nPP~~  120 (201)
T d1wy7a1         112 IVIMNPPFG  120 (201)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEcCccc
Confidence            999999984

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.84  E-value=1.2e-05  Score=74.32  Aligned_cols=86  Identities=17%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh-
Q 006172          517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL-  595 (658)
Q Consensus       517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l-  595 (658)
                      .|....+.+-+|||||||.|++.+.+...|.+   +++||+|+.+.+..+.++...+..      ..|.....+..... 
T Consensus        34 ~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~------~~v~~~~~d~~~~~~  104 (171)
T d1ws6a1          34 YLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLG------ARVVALPVEVFLPEA  104 (171)
T ss_dssp             HHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCC------CEEECSCHHHHHHHH
T ss_pred             HhhccccCCCeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhccc------cceeeeehhcccccc
Confidence            34455667789999999999999988888974   447999999999999988765321      12333444333222 


Q ss_pred             hhccCCccEEEecCCC
Q 006172          596 IHKLGSIDFVICQNSV  611 (658)
Q Consensus       596 ~~~~g~~DLVIGGpPC  611 (658)
                      ......||+|+--||.
T Consensus       105 ~~~~~~fD~If~DPPY  120 (171)
T d1ws6a1         105 KAQGERFTVAFMAPPY  120 (171)
T ss_dssp             HHTTCCEEEEEECCCT
T ss_pred             cccCCccceeEEcccc
Confidence            2234679999999983

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.82  E-value=2e-05  Score=71.18  Aligned_cols=87  Identities=15%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             hcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhH
Q 006172          514 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKF  592 (658)
Q Consensus       514 ~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~I  592 (658)
                      +|+.|.+++ .+-+|||||||+|++.+.+-..|..  -|.+||+|+.+.++++.+....+... ..++.+|+.+.    +
T Consensus         5 ~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~----l   77 (152)
T d2esra1           5 IFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----I   77 (152)
T ss_dssp             HHHHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----H
T ss_pred             HHHHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhccccccc----c
Confidence            456677765 4678999999999999877777864  57899999999999998876543222 12334454332    1


Q ss_pred             HHhhhccCCccEEEecCC
Q 006172          593 ESLIHKLGSIDFVICQNS  610 (658)
Q Consensus       593 e~l~~~~g~~DLVIGGpP  610 (658)
                      +   ...+.+|+|+--||
T Consensus        78 ~---~~~~~fDiIf~DPP   92 (152)
T d2esra1          78 D---CLTGRFDLVFLDPP   92 (152)
T ss_dssp             H---HBCSCEEEEEECCS
T ss_pred             c---ccccccceeEechh
Confidence            1   12468999999998

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.74  E-value=1.8e-05  Score=75.59  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .|-+||||+||.|.+++++...|..  .|++||+|+.+.++.+.+..     ...+..+|+.++.           +.||
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----------~~fD  109 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  109 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----------Ccce
Confidence            4678999999999999999999974  58899999999998877532     2336678887654           4799


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +|+.-||
T Consensus       110 ~Vi~NPP  116 (197)
T d1ne2a_         110 TWIMNPP  116 (197)
T ss_dssp             EEEECCC
T ss_pred             EEEeCcc
Confidence            9999888

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.72  E-value=2.7e-05  Score=72.78  Aligned_cols=89  Identities=19%  Similarity=0.282  Sum_probs=61.4

Q ss_pred             cccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHH
Q 006172          515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFE  593 (658)
Q Consensus       515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie  593 (658)
                      |+.|..++ .+-+|||||||.|++.+.+-.-|..  -|+.||+|+.+.++++.+....+.. ...++..|+.+.    ++
T Consensus        33 Fn~l~~~~-~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~----l~  105 (182)
T d2fhpa1          33 FNMIGPYF-DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA----LE  105 (182)
T ss_dssp             HHHHCSCC-SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HH
T ss_pred             HHHHHHhc-CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh----hh
Confidence            33454444 4678999999999999977777864  5788999999999999887654321 112344555432    23


Q ss_pred             HhhhccCCccEEEecCC
Q 006172          594 SLIHKLGSIDFVICQNS  610 (658)
Q Consensus       594 ~l~~~~g~~DLVIGGpP  610 (658)
                      .+......||+|+--||
T Consensus       106 ~~~~~~~~fDlIflDPP  122 (182)
T d2fhpa1         106 QFYEEKLQFDLVLLDPP  122 (182)
T ss_dssp             HHHHTTCCEEEEEECCC
T ss_pred             hhcccCCCcceEEechh
Confidence            33333457999999998

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.65  E-value=4.2e-05  Score=77.26  Aligned_cols=85  Identities=20%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||||||.||+++++.+.|   .-|+++|+++.+.+..+.++...+.....++..|+.++.    ..+......||
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~----~~~~~~~~~fD  217 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL----RRLEKEGERFD  217 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH----HHHHHTTCCEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh----hhhHhhhcCCC
Confidence            46799999999999999987644   357899999999999988876543222223445554332    22223346899


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      +|+-=|||...+
T Consensus       218 ~Vi~DpP~~~~~  229 (318)
T d1wxxa2         218 LVVLDPPAFAKG  229 (318)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEEcCCccccc
Confidence            999999997655

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=2.9e-05  Score=72.32  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=55.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||||||.|.+.+.+-.-|..  -|++||+|+.+.++++.+....+.....++..|+       +.-+......||
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~-------~~~l~~~~~~fD  113 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA-------MSFLAQKGTPHN  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH-------HHHHSSCCCCEE
T ss_pred             chhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecc-------cccccccccccC
Confidence            3468999999999999877777874  4788999999999999876543222222233333       222222346799


Q ss_pred             EEEecCCC
Q 006172          604 FVICQNSV  611 (658)
Q Consensus       604 LVIGGpPC  611 (658)
                      +|+--||.
T Consensus       114 lIf~DPPY  121 (183)
T d2fpoa1         114 IVFVDPPF  121 (183)
T ss_dssp             EEEECCSS
T ss_pred             EEEEcCcc
Confidence            99999994

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.62  E-value=6.6e-05  Score=75.84  Aligned_cols=89  Identities=20%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172          521 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       521 ~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      +...+-+|||+|||.||+++.+-+.|-.  -|+++|+++.+....+.++..++-.. ..++.+|+.+.    +..+....
T Consensus       142 ~~~~g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~----~~~~~~~~  215 (324)
T d2as0a2         142 WVQPGDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE----MEKLQKKG  215 (324)
T ss_dssp             GCCTTCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHTT
T ss_pred             hcCCCCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh----hHHHHhcc
Confidence            3445789999999999999999888863  58899999999999988876543211 12344555432    22233344


Q ss_pred             CCccEEEecCCCCCcc
Q 006172          600 GSIDFVICQNSVPQIP  615 (658)
Q Consensus       600 g~~DLVIGGpPCQ~FS  615 (658)
                      ..||+|+--|||-.-+
T Consensus       216 ~~fD~Vi~DpP~~~~~  231 (324)
T d2as0a2         216 EKFDIVVLDPPAFVQH  231 (324)
T ss_dssp             CCEEEEEECCCCSCSS
T ss_pred             CCCCchhcCCccccCC
Confidence            6899999999996544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.55  E-value=4.4e-05  Score=75.29  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +..+-+|||+|||+|++++-+-+.|-  .-|+++|+|+.+.+.++.+-...+..+ ..++.+|.+++..+         +
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~---------~  173 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---------N  173 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---------S
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC---------C
Confidence            34678999999999999998777774  247899999999999988765443333 23457888766532         4


Q ss_pred             CccEEEecCCCCC
Q 006172          601 SIDFVICQNSVPQ  613 (658)
Q Consensus       601 ~~DLVIGGpPCQ~  613 (658)
                      .+|.|+-++|+..
T Consensus       174 ~~D~Ii~~~p~~~  186 (260)
T d2frna1         174 IADRILMGYVVRT  186 (260)
T ss_dssp             CEEEEEECCCSSG
T ss_pred             CCCEEEECCCCch
Confidence            6999999999754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.54  E-value=9.4e-05  Score=74.88  Aligned_cols=84  Identities=17%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||||||.||+++.+...|-.  -|++||+++.+.+..+.++..++..  ...++.+|+.+.    +..+......
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~----l~~~~~~~~~  217 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT  217 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH----HHHHHhhcCC
Confidence            4678999999999999998888863  5889999999999999887643221  112345555422    2333334468


Q ss_pred             ccEEEecCCCCC
Q 006172          602 IDFVICQNSVPQ  613 (658)
Q Consensus       602 ~DLVIGGpPCQ~  613 (658)
                      ||+||-=|||=.
T Consensus       218 fD~Ii~DPP~f~  229 (317)
T d2b78a2         218 YDIIIIDPPSFA  229 (317)
T ss_dssp             EEEEEECCCCC-
T ss_pred             CCEEEEcChhhc
Confidence            999999999543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.42  E-value=0.0002  Score=72.59  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=61.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      ..+.+|||||||.||+++.+-..|-+   |++||+++.+....+.+...++...  ..++.+|+.+.-    .....+..
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l----~~~~~~~~  203 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI----QREERRGS  203 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH----HHHHHHTC
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH----HHHhhcCC
Confidence            35679999999999999999999963   6789999999999988765433221  224567775442    22333446


Q ss_pred             CccEEEecCCCC
Q 006172          601 SIDFVICQNSVP  612 (658)
Q Consensus       601 ~~DLVIGGpPCQ  612 (658)
                      .||+||-=||+=
T Consensus       204 ~fD~IilDPP~f  215 (309)
T d2igta1         204 TYDIILTDPPKF  215 (309)
T ss_dssp             CBSEEEECCCSE
T ss_pred             CCCEEEECCCcc
Confidence            899999999964

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.00011  Score=58.38  Aligned_cols=40  Identities=23%  Similarity=0.395  Sum_probs=37.2

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      -.++++++.|||+++.+.|||...|..+.+.-+|.||+..
T Consensus        10 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~   49 (64)
T d1whca_          10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE   49 (64)
T ss_dssp             CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHCC
Confidence            4588999999999999999999999999999999999854

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00024  Score=56.22  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             CCCCCCCchhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172            5 ENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus         5 ~~~assS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      +...++.....+.+++.|||+++.+.+||+.++. |.+.-+++||+..
T Consensus         2 s~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~~wL~~~~   48 (63)
T d1wjia_           2 SSGSSGVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSN   48 (63)
T ss_dssp             CSSCCSSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHS
T ss_pred             CCCCCccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence            3344444466899999999999999999999986 9999999999953

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=0.00022  Score=66.09  Aligned_cols=80  Identities=16%  Similarity=0.074  Sum_probs=54.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||||||.|.+.+-.-.-|..  -++.||.|..+.++++.+....+...  ..+...|+.+.-     ......+.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l-----~~~~~~~~  115 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-----KQPQNQPH  115 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-----TSCCSSCC
T ss_pred             ccceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccc-----cccccCCc
Confidence            4568999999999998877788874  57889999999999999876543211  112223321111     01112357


Q ss_pred             ccEEEecCC
Q 006172          602 IDFVICQNS  610 (658)
Q Consensus       602 ~DLVIGGpP  610 (658)
                      ||||.--||
T Consensus       116 fDlIFlDPP  124 (183)
T d2ifta1         116 FDVVFLDPP  124 (183)
T ss_dssp             EEEEEECCC
T ss_pred             ccEEEechh
Confidence            999999999

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00045  Score=54.74  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=36.2

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+.+..|+.|||+++.+.+|+..||.+  ++.-+|+|+++.
T Consensus        19 de~~v~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Lls~~   58 (63)
T d1wgna_          19 ERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            4678999999999999999999999974  799999999874

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00045  Score=52.57  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=35.7

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      +++.+++|||+++.+.||+...|..+.+.=+|.|+..+
T Consensus         5 ~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~   42 (51)
T d2crna1           5 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC   42 (51)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence            67999999999999999999999999999999999864

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.88  E-value=0.00079  Score=49.29  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=30.9

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      .+..++.|++|||+++++.+|+++|.=+  ++.-+++|+
T Consensus         4 k~~ai~eL~~MGF~e~~A~~AL~k~~wn--leaAtN~LL   40 (43)
T d2g3qa1           4 KSLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLL   40 (43)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHcCCC--HHHHHHHHH
Confidence            5667899999999999999999998765  466666665

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00045  Score=52.65  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=34.0

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      .++.+++|||+++.+.||+...|..+.+.-+|.||+
T Consensus        15 ~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          15 ALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            679999999999999999999998899999999985

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.83  E-value=0.00053  Score=50.22  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             CCchhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           10 SSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        10 sS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      |+.+..|+.+++|||+++-+.+|++.+.- |.+.-+++||.
T Consensus         2 tpk~~ai~eL~~MGF~e~~A~~AL~k~~w-nleaAtN~LLd   41 (43)
T d2g3qa1           2 TPKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD   41 (43)
T ss_dssp             CHHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence            56678899999999999999999999876 78888888874

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00046  Score=54.69  Aligned_cols=37  Identities=24%  Similarity=0.483  Sum_probs=34.7

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      .+.+++.|||+++.+.+|++..|. |.+.-+|+||+.+
T Consensus        22 ~v~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~Lls~~   58 (63)
T d1wgna_          22 CVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence            789999999999999999999996 8999999999864

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00032  Score=51.19  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      .++.+..|+.|||+++.|..|+.+++.+  ++.=+|+|+
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~N--~e~A~~~Ll   40 (41)
T d1oqya1           4 YETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLL   40 (41)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            6778999999999999999999999864  467777765

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0013  Score=65.98  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||||||+|.+++.|.+.+   +-|+++|+++.+.+..+.+....+-....++.+|+.+.-...    ......+|
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~----~~~~~~~d  284 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ----PWAKNGFD  284 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS----GGGTTCCS
T ss_pred             CCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh----hhhhccCc
Confidence            34679999999999999998866   457999999999998887765433333334556655432221    12235789


Q ss_pred             EEEecCC
Q 006172          604 FVICQNS  610 (658)
Q Consensus       604 LVIGGpP  610 (658)
                      +||==||
T Consensus       285 ~vilDPP  291 (358)
T d1uwva2         285 KVLLDPA  291 (358)
T ss_dssp             EEEECCC
T ss_pred             eEEeCCC
Confidence            9998888

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00035  Score=50.98  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE   50 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt   50 (658)
                      ..++++++|||+++.|.+|++..+- |.+.=+|+||+
T Consensus         6 ~~i~~L~~MGF~~~~a~~AL~~~~~-N~e~A~~~LlS   41 (41)
T d1oqya1           6 TMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence            4689999999999999999999985 89999999874

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.57  E-value=0.00083  Score=54.57  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=36.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  140 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~  140 (658)
                      ..+.+..|+.|||+++.+..|+..|+.+  ++.-+|+|+..+.
T Consensus        29 ~ee~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG   69 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHhCCC--HHHHHHHHHhCCC
Confidence            4678999999999999999999999986  7999999998753

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.0012  Score=64.49  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ...+-+|||+.||.|.+++++.+.|.+   |+++|+|+.+.+..+.+.... +-...+..+|+.+.         ...+.
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~~~~---------~~~~~  184 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLEAA---------LPFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHHHH---------GGGCC
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHc-CCceeEEecccccc---------ccccc
Confidence            345679999999999999999999964   579999999999888776543 22223344444321         12368


Q ss_pred             ccEEEe
Q 006172          602 IDFVIC  607 (658)
Q Consensus       602 ~DLVIG  607 (658)
                      ||+|+.
T Consensus       185 fD~V~a  190 (254)
T d2nxca1         185 FDLLVA  190 (254)
T ss_dssp             EEEEEE
T ss_pred             cchhhh
Confidence            999985

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0012  Score=50.15  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172          101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus       101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      .+..|++|||+++.+.+|+...|..+ ++.-+|.|+++
T Consensus        15 ~l~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~~WLl~H   51 (51)
T d2cpwa1          15 ALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSH   51 (51)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHcC
Confidence            58899999999999999999998644 68999999863

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.29  E-value=0.002  Score=52.27  Aligned_cols=38  Identities=11%  Similarity=0.352  Sum_probs=35.0

Q ss_pred             hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172           13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY   51 (658)
Q Consensus        13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty   51 (658)
                      ...+..+++|||+++.|.+|++..|. |.+.=+|+||+.
T Consensus        30 ~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~Av~~Lls~   67 (73)
T d1wiva_          30 QSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNN   67 (73)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence            45789999999999999999999987 899999999984

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0025  Score=50.18  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=35.6

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+.+..|+.|||+++.+.+|+..++.  .++.-+++|+...
T Consensus         9 d~~~v~~L~~MGF~~~~a~~AL~~~~~--~~e~A~~wL~~~~   48 (63)
T d1wjia_           9 DEKALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSN   48 (63)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            346789999999999999999999985  4799999999974

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0028  Score=50.15  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=34.5

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172          101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus       101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      .+++|+.|||+++.+.+|+..+|... ++.-++.|+++.
T Consensus        12 ~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h~   49 (64)
T d1whca_          12 ALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHE   49 (64)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHHCC
Confidence            68999999999999999999998854 699999999975

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.16  E-value=0.0045  Score=56.79  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=52.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+-+|||++||.|.+++.+.+.+-+   +.++|+|+.+....+.+....+-..  ..+..+|+.+--         ..+.
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~~---v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~---------~~~~  119 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---------KDRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---------TTSC
T ss_pred             CCCeEEEEeecCChhHHHHHhhccc---cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh---------ccCC
Confidence            4568999999999999999887753   6789999999988887655433221  122344543211         1257


Q ss_pred             ccEEEecCCC
Q 006172          602 IDFVICQNSV  611 (658)
Q Consensus       602 ~DLVIGGpPC  611 (658)
                      ||+|+.-+|.
T Consensus       120 fD~Ii~~~p~  129 (194)
T d1dusa_         120 YNKIITNPPI  129 (194)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEEcccE
Confidence            9999987774

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.11  E-value=0.0032  Score=51.02  Aligned_cols=39  Identities=21%  Similarity=0.285  Sum_probs=35.0

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  138 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~  138 (658)
                      ..+.+..|+.|||+++.+.+|+..||.+  ++.=+++|++.
T Consensus        29 d~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~Av~~Lls~   67 (73)
T d1wiva_          29 DQSSVDTLLSFGFAEDVARKALKASGGD--IEKATDWVFNN   67 (73)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHHS
T ss_pred             CHHHHHHHHhcCCCHHHHHHHHHHcCCC--HHHHHHHHHcC
Confidence            4568999999999999999999999874  69999999975

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0043  Score=61.38  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=59.0

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ..++.+||||-||.|.+.+++...--. ..++++|+++.|.++-+.+-...+.....++.+|+.+       .+  ....
T Consensus       106 ~~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-------~~--~~~~  175 (274)
T d2b3ta1         106 PEQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-------AL--AGQQ  175 (274)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-------GG--TTCC
T ss_pred             cccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-------cc--CCCc
Confidence            346688999999999999888765433 3578999999999998877554432222344555432       11  1247


Q ss_pred             ccEEEecCCCCCcc
Q 006172          602 IDFVICQNSVPQIP  615 (658)
Q Consensus       602 ~DLVIGGpPCQ~FS  615 (658)
                      ||+|+.-||.-+.+
T Consensus       176 fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         176 FAMIVSNPPYIDEQ  189 (274)
T ss_dssp             EEEEEECCCCBCTT
T ss_pred             eeEEEecchhhhhh
Confidence            99999999987654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.0077  Score=58.36  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+-||.|.++..|.+.|++   |++||+++...+..+........ .......++.+++...+.......+.||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~---v~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRK-EPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTT-SHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCe---eeeccCchHHHHHHHHHHHhccc-ccccceeeeeeccccccccccCCCCCce
Confidence            3468999999999999999999985   67899999987776655433221 1122334555554433332222235799


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus       132 ~v~~  135 (292)
T d1xvaa_         132 AVIC  135 (292)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0055  Score=46.39  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172          101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus       101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      .+..|+.|||+++.+.+|+...|..+ ++.=++.|++++
T Consensus         5 ~v~~L~~MGF~~~~a~~Al~~t~n~~-ve~A~~Wl~~h~   42 (51)
T d2crna1           5 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHC   42 (51)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHHcC
Confidence            47889999999999999999988854 699999999984

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.73  E-value=0.0033  Score=50.92  Aligned_cols=37  Identities=16%  Similarity=0.384  Sum_probs=34.5

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   52 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~   52 (658)
                      -+.+++.|||+++.+.+|++..+. |++.-+|+||..+
T Consensus        32 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~Ll~~~   68 (73)
T d1vg5a_          32 QIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS   68 (73)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCS
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence            689999999999999999999998 8999999999854

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.64  E-value=0.0043  Score=51.53  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172           15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA   53 (658)
Q Consensus        15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a   53 (658)
                      ++.++++|||+++.+.|||...|..+++.-++.|+..+.
T Consensus        32 ~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~   70 (84)
T d1veka_          32 IVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMD   70 (84)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            789999999999999999999999999999999998653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.51  E-value=0.0096  Score=58.70  Aligned_cols=80  Identities=14%  Similarity=-0.003  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChHHHHHH----HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLH----RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~----~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+|+|.+||.||+-+++.    ..+..-..++++|+|+.+.+..+.+........ .+..+|....         ...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~---------~~~  186 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM-TLLHQDGLAN---------LLV  186 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCTTSC---------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh-hhhccccccc---------ccc
Confidence            45889999999999988774    233333357899999998877666544332211 1223332111         123


Q ss_pred             CCccEEEecCCCCC
Q 006172          600 GSIDFVICQNSVPQ  613 (658)
Q Consensus       600 g~~DLVIGGpPCQ~  613 (658)
                      ..||+|+|=||...
T Consensus       187 ~~fD~vi~NPPy~~  200 (328)
T d2f8la1         187 DPVDVVISDLPVGY  200 (328)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             ccccccccCCCCCC
Confidence            57999999999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.50  E-value=0.012  Score=53.48  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||++||.|++++.+-+.+-   -|++||+++.+.+..+.+....+.. ...++.+|..++        ......|
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--------~~~~~~~  101 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--------LCKIPDI  101 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--------HTTSCCE
T ss_pred             CCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--------ccccCCc
Confidence            457899999999999999877663   4689999999999988876654322 112344554322        2234689


Q ss_pred             cEEEecC
Q 006172          603 DFVICQN  609 (658)
Q Consensus       603 DLVIGGp  609 (658)
                      |+|+.+.
T Consensus       102 D~v~~~~  108 (186)
T d1l3ia_         102 DIAVVGG  108 (186)
T ss_dssp             EEEEESC
T ss_pred             CEEEEeC
Confidence            9887553

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0028  Score=48.68  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=31.0

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHhCCC--------CHHHHHHHHH
Q 006172           14 NLRSSFIGMGFSPSLVDKVIEEKGQD--------NVDLLLETLI   49 (658)
Q Consensus        14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~--------d~d~iLE~LL   49 (658)
                      .++.+|+.||||..-|.-|++..|=.        ..+.|||.||
T Consensus        11 ~~V~~f~~mGF~rdKvI~VLrrlgik~~~~~~~~~~n~ilEELL   54 (55)
T d1ttea1          11 DLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL   54 (55)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCchhHHHHHHHhCcCCCCcccchHHHHHHHHHh
Confidence            37899999999999999999999833        3568999987

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.27  E-value=0.017  Score=47.78  Aligned_cols=41  Identities=22%  Similarity=0.181  Sum_probs=35.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  139 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q  139 (658)
                      ..+.+.+|+.|||+++.+.+|+..-|..+ ++.-++.|++++
T Consensus        29 d~~~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h~   69 (84)
T d1veka_          29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHM   69 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHHcC
Confidence            34678999999999999999999977643 699999999885

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.23  E-value=0.018  Score=53.36  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      ..-+|||+=||.|..+..|.++|.+   +++||+++......+......+. ...+..+|+.++...         +.||
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~---v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~---------~~fD  107 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---------NEFD  107 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---------SCEE
T ss_pred             CCCEEEEeCCCCCccchhhcccceE---EEEEeeccccccccccccccccc-cchheehhhhhcccc---------cccc
Confidence            3457999999999999999999985   67899999988877775444332 234678888887632         4699


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus       108 ~I~~  111 (251)
T d1wzna1         108 AVTM  111 (251)
T ss_dssp             EEEE
T ss_pred             hHhh
Confidence            8875

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.95  E-value=0.017  Score=54.09  Aligned_cols=77  Identities=16%  Similarity=0.097  Sum_probs=56.3

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      ++.+-+.+-+|||+=||.|.++..|.++|.+   ++++|+++...+..+......+ ....++.+|+.++..        
T Consensus        31 ~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~---v~GvD~S~~ml~~A~~~~~~~~-~~v~~~~~d~~~~~~--------   98 (246)
T d1y8ca_          31 CVENNLVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQG-LKPRLACQDISNLNI--------   98 (246)
T ss_dssp             HHTTTCCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTT-CCCEEECCCGGGCCC--------
T ss_pred             HHHhCCCCCeEEEEeCcCCHHHHHHHHhCCc---cEeeccchhhhhhccccccccC-ccceeeccchhhhcc--------
Confidence            4444455568999999999999999999985   5789999998777665544332 223466788887752        


Q ss_pred             ccCCccEEEe
Q 006172          598 KLGSIDFVIC  607 (658)
Q Consensus       598 ~~g~~DLVIG  607 (658)
                       .+.||+|+.
T Consensus        99 -~~~fD~i~~  107 (246)
T d1y8ca_          99 -NRKFDLITC  107 (246)
T ss_dssp             -SCCEEEEEE
T ss_pred             -cccccccce
Confidence             247999884

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=94.85  E-value=0.015  Score=55.08  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhh
Q 006172          519 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       519 K~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      +.+.+.+-+||||=||.|+...-+.+.|+.  -++++|+++.+.+..+..+...+.. ...+..+|+......       
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-------   89 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------   89 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-------
Confidence            445566789999999999999999999874  4789999999987777655433211 222456676443211       


Q ss_pred             ccCCccEEEe
Q 006172          598 KLGSIDFVIC  607 (658)
Q Consensus       598 ~~g~~DLVIG  607 (658)
                      ..+.||+|+.
T Consensus        90 ~~~~fD~V~~   99 (252)
T d1ri5a_          90 LGKEFDVISS   99 (252)
T ss_dssp             CSSCEEEEEE
T ss_pred             ccccceEEEE
Confidence            1245787763

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.84  E-value=0.023  Score=51.29  Aligned_cols=79  Identities=22%  Similarity=0.318  Sum_probs=55.3

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  597 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~  597 (658)
                      ++.+.+.+-+|||+=||.|.+...|.+.|.+   ++++|+++......+....+.+ .....+..|+.++.-        
T Consensus        31 ~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~---v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~--------   98 (226)
T d1ve3a1          31 LMKYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------   98 (226)
T ss_dssp             HHHSCCSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------
T ss_pred             HHHhcCCCCEEEEECCCcchhhhhHhhhhcc---cccccccccchhhhhhhhcccc-ccccccccccccccc--------
Confidence            3344456679999999999999999999874   6889999998877766443332 222344567766542        


Q ss_pred             ccCCccEEEec
Q 006172          598 KLGSIDFVICQ  608 (658)
Q Consensus       598 ~~g~~DLVIGG  608 (658)
                      ..+.||+|+.-
T Consensus        99 ~~~~fD~I~~~  109 (226)
T d1ve3a1          99 EDKTFDYVIFI  109 (226)
T ss_dssp             CTTCEEEEEEE
T ss_pred             cCcCceEEEEe
Confidence            12578988853

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.019  Score=56.27  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=50.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      +-+||||-||.|.+++.+.++|-.  .|+++|.++.+..+.+....+.......++.+|+.++...        ...+|+
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~--------~~~~D~  105 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKVDV  105 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCEEE
T ss_pred             cCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc--------cccceE
Confidence            457999999999999999999973  5889999998876554432222122223455677766421        257999


Q ss_pred             EEe
Q 006172          605 VIC  607 (658)
Q Consensus       605 VIG  607 (658)
                      |+.
T Consensus       106 Ivs  108 (311)
T d2fyta1         106 IIS  108 (311)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=94.29  E-value=0.021  Score=53.11  Aligned_cols=68  Identities=13%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             hhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006172          513 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  588 (658)
Q Consensus       513 ~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt  588 (658)
                      |.++.+..+++. -+|||+=||.|.+...|.+.|.+   |+++|+++......+...    ..+..+..+|+.++.
T Consensus        10 ~~~~~~~~~~~~-~~VLDiGcG~G~~~~~l~~~g~~---v~giD~s~~~i~~a~~~~----~~~~~~~~~~~~~~~   77 (225)
T d2p7ia1          10 FMVRAFTPFFRP-GNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRL----KDGITYIHSRFEDAQ   77 (225)
T ss_dssp             HHHHHHGGGCCS-SCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHS----CSCEEEEESCGGGCC
T ss_pred             HHHHHhhhhCCC-CcEEEEeCCCcHHHHHHHHcCCe---EEEEeCcHHHhhhhhccc----ccccccccccccccc
Confidence            344555565654 48999999999999999999975   689999999887776532    122334556665543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=94.23  E-value=0.036  Score=50.64  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+=||.|.++..+.+.|-+   +.++|+++...+..+......+.+...++.+|+.++.-.        .+.||
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~--------~~~fD   83 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT--------DERFH   83 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC--------TTCEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhCCE---EEEEECCHHHHhhhhhccccccccccccccccccccccc--------ccccc
Confidence            4578999999999999999999854   679999998776655543333333334667787776421        24688


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus        84 ~v~~   87 (231)
T d1vl5a_          84 IVTC   87 (231)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.04  E-value=0.049  Score=49.31  Aligned_cols=75  Identities=20%  Similarity=0.246  Sum_probs=53.0

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  605 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  605 (658)
                      -+||||=||.|.....|.+.|++   +++||+++.+.+..+.+....+-....+...|+.++..+         +.||+|
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------~~fD~I   99 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD---------GEYDFI   99 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC---------CCEEEE
T ss_pred             CcEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheeccccccc---------ccccEE
Confidence            38999999999999999999986   578999999988877655433222222344555544421         468888


Q ss_pred             EecCCCC
Q 006172          606 ICQNSVP  612 (658)
Q Consensus       606 IGGpPCQ  612 (658)
                      +.....+
T Consensus       100 ~~~~~~~  106 (198)
T d2i6ga1         100 LSTVVMM  106 (198)
T ss_dssp             EEESCGG
T ss_pred             EEeeeee
Confidence            8765443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.038  Score=54.61  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +.+||||-||.|.+++-+.++|..  .|+++|.++.+..+ +..-...+... ..++.+|+.++...        ...+|
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a-~~~~~~~~~~~~i~~i~~~~~~l~~~--------~~~~D  107 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMA-KELVELNGFSDKITLLRGKLEDVHLP--------FPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHH-HHHHHHTTCTTTEEEEESCTTTSCCS--------SSCEE
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHH-HHHHHHhCccccceEEEeehhhccCc--------cccee
Confidence            468999999999999999999974  58899999865333 22222222222 22456777766421        24799


Q ss_pred             EEEec
Q 006172          604 FVICQ  608 (658)
Q Consensus       604 LVIGG  608 (658)
                      +|+.-
T Consensus       108 ~i~se  112 (328)
T d1g6q1_         108 IIISE  112 (328)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99863

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=93.81  E-value=0.028  Score=51.42  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=55.6

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006172          517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  596 (658)
Q Consensus       517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~  596 (658)
                      .++.+.+.+.+|||+=||.|.+..-|.+.|.+   |.++|+++...+..+..-      ...++.+|+.++.-       
T Consensus        35 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~giD~s~~~l~~a~~~~------~~~~~~~~~~~l~~-------   98 (246)
T d2avna1          35 FLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKG------VKNVVEAKAEDLPF-------   98 (246)
T ss_dssp             HHHHHCCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHT------CSCEEECCTTSCCS-------
T ss_pred             HHHHhcCCCCEEEEECCCCchhcccccccceE---EEEeeccccccccccccc------cccccccccccccc-------
Confidence            35566677889999999999999999999975   688999999888776531      11245677777642       


Q ss_pred             hccCCccEEEe
Q 006172          597 HKLGSIDFVIC  607 (658)
Q Consensus       597 ~~~g~~DLVIG  607 (658)
                       ..+.||+|+.
T Consensus        99 -~~~~fD~ii~  108 (246)
T d2avna1          99 -PSGAFEAVLA  108 (246)
T ss_dssp             -CTTCEEEEEE
T ss_pred             -ccccccceee
Confidence             1257999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.80  E-value=0.046  Score=53.79  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=48.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      +-+||||.||.|.+++-+.++|-.  .|+++|.++.+..+.+.. ...+... ..++.+|+.++..        ....+|
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~-~~n~~~~~v~~~~~~~~~~~~--------~~~~~D  102 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIV-KANKLDHVVTIIKGKVEEVEL--------PVEKVD  102 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHH-HHTTCTTTEEEEESCTTTCCC--------SSSCEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHH-HHhCCccccceEeccHHHccc--------ccceeE
Confidence            457999999999999999999964  478999998765443322 2222212 2244577776642        225799


Q ss_pred             EEEec
Q 006172          604 FVICQ  608 (658)
Q Consensus       604 LVIGG  608 (658)
                      +|+.-
T Consensus       103 ~ivs~  107 (316)
T d1oria_         103 IIISE  107 (316)
T ss_dssp             EEEEC
T ss_pred             EEeee
Confidence            99854

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=93.50  E-value=0.055  Score=50.11  Aligned_cols=78  Identities=13%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+=||.|.++..|.+.|.+   +.+||+++...+..+.+....+.....++.+|+.++.-        ..+.||
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~~~---v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD   84 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSFD   84 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhCCe---EEEEeCChhhhhhhhhhhcccccccccccccccccccc--------cccccc
Confidence            5678999999999999999998854   67999999876665554333222233456777776542        125799


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+...-.+
T Consensus        85 ~v~~~~~l~   93 (234)
T d1xxla_          85 IITCRYAAH   93 (234)
T ss_dssp             EEEEESCGG
T ss_pred             eeeeeceee
Confidence            998755433

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.03  Score=51.78  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+||||-||.|.+...|...+.  .-|.+||+++......+......+.....++.+|+.++...        .+.||
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~--------~~~fD  129 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE--------PDSYD  129 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC--------SSCEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccc--------ccccc
Confidence            446899999999999988765554  34788999999877766654332222223566777776531        25688


Q ss_pred             EEEe
Q 006172          604 FVIC  607 (658)
Q Consensus       604 LVIG  607 (658)
                      +|+.
T Consensus       130 ~I~~  133 (222)
T d2ex4a1         130 VIWI  133 (222)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.12  E-value=0.022  Score=51.88  Aligned_cols=74  Identities=8%  Similarity=-0.016  Sum_probs=48.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||.+||.|++-.++.+.-..-..+.++|+++.+....         ....++.+|-....         ....+|
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~---------~~~~fd   80 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE---------PGEAFD   80 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC---------CSSCEE
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc---------cccccc
Confidence            457899999999999888865433334578999999763221         11123344432221         235799


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      ++++-||.-...
T Consensus        81 ~ii~npP~~~~~   92 (223)
T d2ih2a1          81 LILGNPPYGIVG   92 (223)
T ss_dssp             EEEECCCCCCBS
T ss_pred             eecccCcccccc
Confidence            999999985543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.091  Score=51.58  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      .+-+|||+.||.||=+..+..+ +=. ..++|+|+++.-.+.++.+....+.....+...|-..+....     ...+.|
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~-~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~-----~~~~~f  167 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  167 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             ccceEEecccchhhHHHHHHHHhcCC-ceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc-----ccccee
Confidence            4678999999999977665533 211 247899999998888888766554333334455655554421     234789


Q ss_pred             cEEEecCCCCCcccC
Q 006172          603 DFVICQNSVPQIPNS  617 (658)
Q Consensus       603 DLVIGGpPCQ~FS~a  617 (658)
                      |.|+-=+||.+....
T Consensus       168 D~VL~DaPCSg~G~~  182 (293)
T d2b9ea1         168 HYILLDPSCSGSGMP  182 (293)
T ss_dssp             EEEEECCCCCC----
T ss_pred             eEEeecCcccchhhh
Confidence            999999999987754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=92.28  E-value=0.16  Score=49.68  Aligned_cols=82  Identities=16%  Similarity=0.227  Sum_probs=55.7

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCcc
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      ..+++|+-||.|...+++.... +. .++++|+++.|..+-+.|-...+-.... ++.+|..+.       +....+.||
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~-~~-~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~-------~~~~~~~fD  181 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFS-DA-IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-------FKEKFASIE  181 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS-SC-EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-------GGGGTTTCC
T ss_pred             ccEEEEeeeeeehhhhhhhhcc-cc-eeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc-------cccccCccc
Confidence            3578999999998888776543 32 4789999999999988875543321111 223443322       122457899


Q ss_pred             EEEecCCCCCcc
Q 006172          604 FVICQNSVPQIP  615 (658)
Q Consensus       604 LVIGGpPCQ~FS  615 (658)
                      ||+.-||.-+-+
T Consensus       182 lIVsNPPYI~~~  193 (271)
T d1nv8a_         182 MILSNPPYVKSS  193 (271)
T ss_dssp             EEEECCCCBCGG
T ss_pred             EEEEcccccCcc
Confidence            999999998754

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.16  E-value=0.045  Score=38.78  Aligned_cols=34  Identities=12%  Similarity=0.378  Sum_probs=30.6

Q ss_pred             hhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172           16 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI   49 (658)
Q Consensus        16 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL   49 (658)
                      ...++--||.++||.+|+++.|..+.++-+|++-
T Consensus         6 lqdl~~aG~D~~m~iral~qt~~rsieaaie~is   39 (41)
T d2cosa1           6 LQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   39 (41)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHh
Confidence            4567778999999999999999999999999985

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=91.47  E-value=0.15  Score=48.46  Aligned_cols=76  Identities=18%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             CCCCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .+.+.+|||+=||.|++..-|.+ .|.+   |++||+++......+.+....+-. ...++.+|+.++.-.        .
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~--------~  133 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--------D  133 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--------T
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcE---EEEEeccchhhhhhhccccccccccccccccccccccccc--------c
Confidence            45678999999999999988865 4753   679999999877777665544322 123556777766421        2


Q ss_pred             CCccEEEec
Q 006172          600 GSIDFVICQ  608 (658)
Q Consensus       600 g~~DLVIGG  608 (658)
                      +.||+|+..
T Consensus       134 ~sfD~V~~~  142 (282)
T d2o57a1         134 NSYDFIWSQ  142 (282)
T ss_dssp             TCEEEEEEE
T ss_pred             cccchhhcc
Confidence            568888753

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.45  E-value=0.1  Score=39.86  Aligned_cols=27  Identities=15%  Similarity=0.218  Sum_probs=24.4

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCC
Q 006172          100 EKRASLLMMNFSVNEVDFALDKLGKDA  126 (658)
Q Consensus       100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~  126 (658)
                      +.+.+|+.||||.+.|..++.|+|-..
T Consensus        11 ~~V~~f~~mGF~rdKvI~VLrrlgik~   37 (55)
T d1ttea1          11 DLIDEFESQGFEKDKIVEVLRRLGVKS   37 (55)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHcCCCchhHHHHHHHhCcCC
Confidence            578899999999999999999999763

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.12  Score=47.80  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  567 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~  567 (658)
                      +.+.+|||+=||.|-..+-|.+.|++   |++||+++.+.+..+.
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~---V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHS---VVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCc---EEEEeCCHHHHHHHHH
Confidence            35679999999999999999999996   6899999999876654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=90.80  E-value=0.26  Score=45.81  Aligned_cols=84  Identities=18%  Similarity=0.058  Sum_probs=59.0

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172          526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  605 (658)
Q Consensus       526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  605 (658)
                      ..|||+=||.|...+.+.+..=+ ..+++||+++.............+-....++.+|+..+.. .+     ..+.+|.|
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~-~~-----~~~~~d~v  103 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD-VF-----EPGEVKRV  103 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH-HC-----CTTSCCEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc-cc-----Cchhhhcc
Confidence            46899999999999988877533 3578999999987766655444444344456788776531 11     23678988


Q ss_pred             EecCCCCCccc
Q 006172          606 ICQNSVPQIPN  616 (658)
Q Consensus       606 IGGpPCQ~FS~  616 (658)
                      .--+|+.-+..
T Consensus       104 ~i~fp~P~~k~  114 (204)
T d2fcaa1         104 YLNFSDPWPKK  114 (204)
T ss_dssp             EEESCCCCCSG
T ss_pred             ccccccccchh
Confidence            88888876653

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.33  Score=46.31  Aligned_cols=87  Identities=11%  Similarity=0.022  Sum_probs=51.5

Q ss_pred             CCCCcccccCCCCChHHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc-ccccccccChhhHHHhhhcc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESSGQTGELV-QIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~--~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~-~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      ...+++|||=+|.|...+.|-  .-+.+   ++++||++.|.++-+.+-...+-..... ...+....-...+..  ...
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~---~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~  134 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWY---FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESE  134 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCS
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCcc---ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--ccc
Confidence            345789999999998776554  44553   6899999999998888755433222111 111211111111100  122


Q ss_pred             CCccEEEecCCCCCc
Q 006172          600 GSIDFVICQNSVPQI  614 (658)
Q Consensus       600 g~~DLVIGGpPCQ~F  614 (658)
                      +.||+|+.=||=-+-
T Consensus       135 ~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         135 IIYDFCMCNPPFFAN  149 (250)
T ss_dssp             CCBSEEEECCCCC--
T ss_pred             CceeEEEecCccccc
Confidence            579999999996543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.12  Score=47.48  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=52.5

Q ss_pred             CCCCCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      +..+.+||||=|+-||.+..+. +.+-. ..++++|+.+..           +..+..++.+||.+.............+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~-~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeecccc-ceEEEeeccccc-----------ccCCceEeecccccchhhhhhhhhccCc
Confidence            4567899999999999997544 55533 457899987742           2345556778887644332221112346


Q ss_pred             CccEEE--ecCCCCCc
Q 006172          601 SIDFVI--CQNSVPQI  614 (658)
Q Consensus       601 ~~DLVI--GGpPCQ~F  614 (658)
                      .+|||+  |+|.|++-
T Consensus        88 ~~DlVlSD~ap~~sg~  103 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGT  103 (180)
T ss_dssp             CEEEEEECCCCCCCSC
T ss_pred             ceeEEEecccchhccc
Confidence            799998  56666544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.45  E-value=0.23  Score=46.16  Aligned_cols=90  Identities=20%  Similarity=0.217  Sum_probs=58.5

Q ss_pred             chhhhcccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006172          510 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  588 (658)
Q Consensus       510 ti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt  588 (658)
                      .+++.+..|.  ...+.+|||+=||.|.++..+-+ .|-. -.|+++|+++......+.+....+.....+..+|..+.-
T Consensus        63 ~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence            3455555553  34678999999999999988854 4422 247899999998777776655443333334456655433


Q ss_pred             hhhHHHhhhccCCccEEEecCC
Q 006172          589 TKKFESLIHKLGSIDFVICQNS  610 (658)
Q Consensus       589 ~~~Ie~l~~~~g~~DLVIGGpP  610 (658)
                      .        ..+.||+|+-+..
T Consensus       140 ~--------~~~~fD~I~~~~~  153 (213)
T d1dl5a1         140 P--------EFSPYDVIFVTVG  153 (213)
T ss_dssp             G--------GGCCEEEEEECSB
T ss_pred             c--------cccchhhhhhhcc
Confidence            2        2357998886553

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=89.82  E-value=0.23  Score=46.13  Aligned_cols=73  Identities=25%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             CCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172          524 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+|||+=||.|++...+.+ .|.+   +++||+++......+......+-.. ..++.+|+.++..+         +.
T Consensus        33 pg~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~---------~~  100 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---------EK  100 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS---------SC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc---------Cc
Confidence            367899999999999988755 5754   6799999988776666544432211 23566777765321         45


Q ss_pred             ccEEEec
Q 006172          602 IDFVICQ  608 (658)
Q Consensus       602 ~DLVIGG  608 (658)
                      ||+|+..
T Consensus       101 fD~v~~~  107 (245)
T d1nkva_         101 CDVAACV  107 (245)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEE
Confidence            7777643

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=89.52  E-value=0.32  Score=42.14  Aligned_cols=50  Identities=22%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             hcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172          514 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  568 (658)
Q Consensus       514 ~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~  568 (658)
                      +|+.|.  .+.+-+|||+=||.|-..+-|-+.|++   |+++|+++...+..+..
T Consensus        12 ~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~~---V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          12 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHH
T ss_pred             HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcCCc---eEeecccHHHHHHHHHH
Confidence            344553  356789999999999999999999986   68899999998887763

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=88.52  E-value=0.18  Score=47.66  Aligned_cols=44  Identities=16%  Similarity=0.106  Sum_probs=37.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      +.+-.|||.|+|.|...+|.+++|-+   .++||+++...++.+..+
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~---~Ig~El~~~y~~~a~~Rl  292 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF  292 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCc---EEEEeCCHHHHHHHHHHH
Confidence            45678999999999999999999964   678999999888776544

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=88.52  E-value=0.27  Score=46.88  Aligned_cols=70  Identities=11%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  602 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  602 (658)
                      ..+.+|||+=||.|.+...|.+++-.. .++++|+++.+.+..+..     .+...+..+|+.++.-.        .+.|
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~--------~~sf  148 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS--------DTSM  148 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC--------TTCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCC-EEEEecchHhhhhhhhcc-----cccccceeeehhhccCC--------CCCE
Confidence            356789999999999999999987543 467999999987766542     22334567888877532        2468


Q ss_pred             cEEE
Q 006172          603 DFVI  606 (658)
Q Consensus       603 DLVI  606 (658)
                      |+|+
T Consensus       149 D~v~  152 (268)
T d1p91a_         149 DAII  152 (268)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8887

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.37  E-value=0.5  Score=44.60  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ..|.+||||-||.|++..-|.+. |-. -.|+++|+++...+.++.....  ......+..|......     +......
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~--~~~~~~i~~d~~~~~~-----~~~~~~~  143 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEE-----YRALVPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGG-----GTTTCCC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHh--cCCceEEEEECCCccc-----ccccccc
Confidence            45799999999999999888763 432 2478999999998887764322  1122234455543321     1112367


Q ss_pred             ccEEEecCCCCCc
Q 006172          602 IDFVICQNSVPQI  614 (658)
Q Consensus       602 ~DLVIGGpPCQ~F  614 (658)
                      +|+|.--.||.+.
T Consensus       144 vD~i~~d~~~~~~  156 (227)
T d1g8aa_         144 VDVIFEDVAQPTQ  156 (227)
T ss_dssp             EEEEEECCCSTTH
T ss_pred             eEEEEEEccccch
Confidence            8988888777643

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.94  E-value=0.48  Score=45.53  Aligned_cols=79  Identities=18%  Similarity=0.076  Sum_probs=54.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  600 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g  600 (658)
                      ..+.+|||+=||.|++++.|-++ |-. -.|+++|+++...+..+.++..... ....+..+|+.+.-.         -.
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~---------~~  153 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---------DQ  153 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---------SC
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc---------cc
Confidence            34689999999999999998875 422 2578999999988887777654321 122245567665422         14


Q ss_pred             CccEEEecCCC
Q 006172          601 SIDFVICQNSV  611 (658)
Q Consensus       601 ~~DLVIGGpPC  611 (658)
                      .||.|+-..|.
T Consensus       154 ~fD~V~ld~p~  164 (250)
T d1yb2a1         154 MYDAVIADIPD  164 (250)
T ss_dssp             CEEEEEECCSC
T ss_pred             eeeeeeecCCc
Confidence            68988866554

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=86.57  E-value=0.3  Score=46.36  Aligned_cols=77  Identities=16%  Similarity=0.059  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      ...+|||+=||+|.++..|-..++.  .|.+||+++...+..+......  +...++..|+++++..        .+.||
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~fD  160 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLP--------PNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCC--------SSCEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccC--------CCccc
Confidence            4578999999999999886655543  5788999999988877654322  1122456777766532        25689


Q ss_pred             EEEecCCCC
Q 006172          604 FVICQNSVP  612 (658)
Q Consensus       604 LVIGGpPCQ  612 (658)
                      +|+.....+
T Consensus       161 ~I~~~~vl~  169 (254)
T d1xtpa_         161 LIVIQWTAI  169 (254)
T ss_dssp             EEEEESCGG
T ss_pred             eEEeecccc
Confidence            888765444

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.45  E-value=0.63  Score=43.05  Aligned_cols=84  Identities=19%  Similarity=0.057  Sum_probs=56.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172          525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  604 (658)
Q Consensus       525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  604 (658)
                      ...|||+=||.|.+.+.+.+..=+ ..+++||+++.............+-....+..+|+.++.. .+     ..+.+|.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~-~~-----~~~~~~~  104 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEIDR  104 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCSE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh-hc-----cCCceeh
Confidence            346899999999999998887533 3578999998755544444444333334466788877642 22     2357899


Q ss_pred             EEecCCCCCcc
Q 006172          605 VICQNSVPQIP  615 (658)
Q Consensus       605 VIGGpPCQ~FS  615 (658)
                      |.--+|..=+-
T Consensus       105 i~i~fPdPw~K  115 (204)
T d1yzha1         105 LYLNFSDPWPK  115 (204)
T ss_dssp             EEEESCCCCCS
T ss_pred             hcccccccccc
Confidence            98888876544

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.59  E-value=0.55  Score=32.21  Aligned_cols=26  Identities=38%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172          100 EKRASLLMMNFSVNEVDFALDKLGKD  125 (658)
Q Consensus       100 ~~~~~lv~MGF~eeev~~Ai~~~G~d  125 (658)
                      .++.+|+.|||.+-|+..|++...-|
T Consensus         4 skiaqlvsmgfdpleaaqaldaangd   29 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANGD   29 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcCc
Confidence            47899999999999999999985443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.93  E-value=0.78  Score=44.43  Aligned_cols=86  Identities=10%  Similarity=0.095  Sum_probs=58.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+.+|||+.||-||=+..+..++-+ -.++|+|+++.-.+.++......+.....+...|-      .... ....+.||
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~------~~~~-~~~~~~fd  173 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR------YPSQ-WCGEQQFD  173 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT------CTHH-HHTTCCEE
T ss_pred             ccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeecccc------ccch-hccccccc
Confidence            4578999999999999999888765 35789999999888888765544322211111111      0001 11235799


Q ss_pred             EEEecCCCCCcccC
Q 006172          604 FVICQNSVPQIPNS  617 (658)
Q Consensus       604 LVIGGpPCQ~FS~a  617 (658)
                      .|+-=+||.+....
T Consensus       174 ~IL~DaPCSg~G~~  187 (284)
T d1sqga2         174 RILLDAPCSATGVI  187 (284)
T ss_dssp             EEEEECCCCCGGGT
T ss_pred             EEEEeccccccCcc
Confidence            99999999987654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.75  E-value=0.45  Score=48.39  Aligned_cols=45  Identities=18%  Similarity=0.078  Sum_probs=37.5

Q ss_pred             CCCcccccCCCCChHHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172          524 GGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  570 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlsl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~  570 (658)
                      ++.+|||.|||.|+.++ ....+|.  +-|+++|+|+.|....+.+-.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~   90 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVM   90 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHH
Confidence            45789999999999998 4566775  468899999999999998754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.63  E-value=0.37  Score=44.70  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=36.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  569 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~  569 (658)
                      .+-.|||.|+|.|...+|.+++|-+   .+++|+++....+.+...
T Consensus       207 ~gdiVLDpF~GSGTT~~Aa~~lgR~---~ig~El~~~y~~~a~~Ri  249 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQL  249 (279)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHH
T ss_pred             CCCEEEecCCCCcHHHHHHHHhCCe---EEEEeCCHHHHHHHHHHH
Confidence            4567999999999999999999964   678999999888776544

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.62  E-value=1.2  Score=43.82  Aligned_cols=86  Identities=10%  Similarity=0.023  Sum_probs=57.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  603 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  603 (658)
                      .+-+|||+.||.||=+..+..+--.--.++++|+++.-.+.++.+....+.....+...|-..+.        ...+.||
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~--------~~~~~fD  187 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG--------ELNVEFD  187 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG--------GGCCCEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc--------ccccccc
Confidence            45789999999999877775443222247899999988877776555443333223333433221        1236799


Q ss_pred             EEEecCCCCCcccC
Q 006172          604 FVICQNSVPQIPNS  617 (658)
Q Consensus       604 LVIGGpPCQ~FS~a  617 (658)
                      .|.-=+||.+-...
T Consensus       188 ~ILvDaPCSg~G~~  201 (313)
T d1ixka_         188 KILLDAPCTGSGTI  201 (313)
T ss_dssp             EEEEECCTTSTTTC
T ss_pred             EEEEccccccCCce
Confidence            99999999987654

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.53  E-value=0.55  Score=33.05  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172          100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  136 (658)
Q Consensus       100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~  136 (658)
                      +.++.|+.-||.+++|..|+++-|... |++-++||.
T Consensus         4 QMlqdl~~aG~D~~m~iral~qt~~rs-ieaaie~is   39 (41)
T d2cosa1           4 QMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYIS   39 (41)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHh
Confidence            456789999999999999999999864 799999985

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=84.48  E-value=0.49  Score=45.22  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=53.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  599 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~  599 (658)
                      .++.+|||+=||.|.+..-|...   |.   .+.++|+++...+..+......+. ...++.+|+.++..         .
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~---------~   92 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL---------N   92 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC---------S
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccc-cccccccccccccc---------c
Confidence            46689999999999988877653   33   367899999988777665443321 22345677776542         1


Q ss_pred             CCccEEEecCCCCC
Q 006172          600 GSIDFVICQNSVPQ  613 (658)
Q Consensus       600 g~~DLVIGGpPCQ~  613 (658)
                      +.||+|+...-++-
T Consensus        93 ~~fD~v~~~~~l~~  106 (281)
T d2gh1a1          93 DKYDIAICHAFLLH  106 (281)
T ss_dssp             SCEEEEEEESCGGG
T ss_pred             CCceEEEEehhhhc
Confidence            46999997765443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=84.32  E-value=0.45  Score=43.54  Aligned_cols=42  Identities=17%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  567 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~  567 (658)
                      +.+=.|||.|+|.|...+|.+++|-+   .+++|+++...++-+.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~---~ig~El~~~y~~~a~~  252 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANF  252 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCe---EEEEeCCHHHHHHHHH
Confidence            34567999999999999999999954   6789999987666544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=83.03  E-value=0.97  Score=41.04  Aligned_cols=48  Identities=13%  Similarity=0.196  Sum_probs=36.7

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHc----CCceeeEEEeeCCHHHHHHHHHH
Q 006172          518 LKSMFPGGLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRW  568 (658)
Q Consensus       518 LK~~f~~~l~vLdLFSGiGGlslGL~~a----Gi~~k~vvavEid~~a~~t~k~~  568 (658)
                      ++.+.+.+-+||||=||.|.++..|.+.    |.   -+.++|+++...+..+..
T Consensus        33 ~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~   84 (225)
T d1im8a_          33 AERFVTADSNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQH   84 (225)
T ss_dssp             HHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHH
T ss_pred             HHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHH
Confidence            3444566789999999999999888753    44   367899999977776654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=81.87  E-value=1.2  Score=41.96  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=48.2

Q ss_pred             hhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006172          511 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  586 (658)
Q Consensus       511 i~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~  586 (658)
                      .++.|..|.  ...+.+||++=||.|-++.-|.+++-   -|+++|+++......+..+...  ....+..+|...
T Consensus        59 ~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~  127 (224)
T d1vbfa_          59 GIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTL  127 (224)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGG
T ss_pred             HHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhcc--cccccccCchhh
Confidence            344455553  34678999999999999988888875   3789999999988877765432  122344556543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.53  E-value=1.6  Score=40.22  Aligned_cols=83  Identities=11%  Similarity=0.008  Sum_probs=53.0

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172          522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      .+.+.+||||=||.|+....+.+.-=+ ..|+++|+++...+.++..-...  .....+..|+......     ......
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~-----~~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY-----SGIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT-----TTTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCcccc-----ccccce
Confidence            456799999999999999888765212 25899999999888776643322  2223445665543221     112346


Q ss_pred             ccEEEecCCCC
Q 006172          602 IDFVICQNSVP  612 (658)
Q Consensus       602 ~DLVIGGpPCQ  612 (658)
                      +|+|..-.++.
T Consensus       126 vd~v~~~~~~~  136 (209)
T d1nt2a_         126 VDLIYQDIAQK  136 (209)
T ss_dssp             EEEEEECCCST
T ss_pred             EEEEEecccCh
Confidence            77776555544

>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: DNA helicase RuvA subunit, C-terminal domain
family: DNA helicase RuvA subunit, C-terminal domain
domain: DNA helicase RuvA subunit, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.13  E-value=0.99  Score=33.19  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHh-CCCCchHHHHH
Q 006172           98 HIEKRASLLMMNFSVNEVDFALDKL-GKDAPVYELVD  133 (658)
Q Consensus        98 ~~~~~~~lv~MGF~eeev~~Ai~~~-G~d~~i~~L~d  133 (658)
                      .++.+..|+..||++.++.+|+.++ +++.++++|+-
T Consensus         5 ~~eAi~AL~~LGY~~~ea~~av~~i~~~~~s~E~lIk   41 (48)
T d1cuka1           5 EQEAVARLVALGYKPQEASRMVSKIARPDASSETLIR   41 (48)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            5778999999999999999999996 34556666654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=80.74  E-value=1  Score=45.65  Aligned_cols=79  Identities=14%  Similarity=0.065  Sum_probs=47.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcC----Cc--------eeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 006172          524 GGLTMLSVFSGIGGAEVTLHRLG----IK--------LKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  589 (658)
Q Consensus       524 ~~l~vLdLFSGiGGlslGL~~aG----i~--------~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~  589 (658)
                      .+.+|+|-+||.|||-+++.+.-    ..        -..++++|+++.+.++.+.+..-+...  ...+..+|.-.-  
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~--  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK--  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence            35789999999999987765321    00        123789999999887766543322111  011222222110  


Q ss_pred             hhHHHhhhccCCccEEEecCCC
Q 006172          590 KKFESLIHKLGSIDFVICQNSV  611 (658)
Q Consensus       590 ~~Ie~l~~~~g~~DLVIGGpPC  611 (658)
                             .....||+|+|=||=
T Consensus       240 -------~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         240 -------EPSTLVDVILANPPF  254 (425)
T ss_dssp             -------CCSSCEEEEEECCCS
T ss_pred             -------hcccccceEEecCCC
Confidence                   123579999999985

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=80.08  E-value=1.4  Score=42.37  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=51.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172          523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  601 (658)
Q Consensus       523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  601 (658)
                      ..+.+|||+-||.|+++..|-++.-+--.++++|+++...+..+.+....+.. ...+..+|+..-.         ....
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~---------~~~~  172 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD  172 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc---------cccc
Confidence            35789999999999999999765222124789999999888877766544321 1112344442211         1245


Q ss_pred             ccEEEecCCC
Q 006172          602 IDFVICQNSV  611 (658)
Q Consensus       602 ~DLVIGGpPC  611 (658)
                      +|.|+-.-|.
T Consensus       173 ~D~V~~d~p~  182 (266)
T d1o54a_         173 VDALFLDVPD  182 (266)
T ss_dssp             EEEEEECCSC
T ss_pred             eeeeEecCCC
Confidence            7877766654