Citrus Sinensis ID: 006173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
Protein Sequence
MGQDENTKAQVQSNEGNNKTPKAKDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFHPMKFL
Secondary Structure (PSIPRED)
cccccccHHHHHcccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHccccHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHcccccHHHHHHHcccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHEccccccccHHHHHHHcccHHHHHHHHHHccHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHcccHcccccccccccHHEEEccccccHHHHHHHcccHHHHHHHHHHcccHHccccccHHHHHHHHHcHHHHHHHHHHHccHHHHccccccccHHHHHHccccHcccccccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHccHHccHHHcHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHHHccccccHHHHHHHHHcHHHHHHHHHHHccHHHHHccccccccHEHHHHHccHHHHHHHHHHccHHHHHHHHHHccccccEHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MGQDENTKAQVqsnegnnktpkakdekiIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFivgipdvpaTLVDKLLskvprnclqnfardegSEYMEYAVSTGKLNLITTLMGyneelpnikvekkddpnikdeekddllpVHMAAKAGKRDAVRHllpktrepldgrqgFVLLKFLIDSNLFDMALALLKChpmiaradigeTGKILESLSkrpkafasgsrlgSWKRLLYQWipiqeeynphphppsenvggdlekQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMnsyfpwslefknkdgyDIFKVAVEHRREKVFNIIfnfpniypffmaniDEKRINILHIAAmsvpstevpgAALQMQRELQWFKAvencvhptlqdqlndkdktprevFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAitvpggsdsrgmpnfleepsftifGISNALALFSSVISVLIFLGILtsrfseedflVSLPRKLIIGLITLFFSIACLMVAFAATVHitqfhpwkwviiptallgflpvFLFATLQFPLLIEVFAstygpgifhpmkfl
Flexible Loop (DISEMBL)
mgqdentkaqvqsnegnnktpkakdekiikdidsYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNfardegseYMEYAVSTGKLNLITTLMGYNEElpnikvekkddpnikdeekddllpvHMAAKAGKRDAVRHLlpktrepldgrqGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILEslskrpkafasgsrlgsWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHptlqdqlndkdktpreVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFHPMKFL
Low Complexity Region (SEG)
MGQDENTKAQVQSNEGNNKTPKAkdekiikdidSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVfniifnfpniypffMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFHPMKFL
Disordered region (IsUnstruct)
***************************IIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELP*********************************************LDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESL*****AFASGSRLGSWKRLLYQWIPIQE**********************VTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTL**************************EKWMKDTAGSCSVVATLIMTIVFAAAITVPGG*****MPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFH*****
Disordered Region (DISOPRED)
*****************************KDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTK*************KDTAGSCSVVATLIMTIVFAAAITV*******GMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFHPMKFL
Disordered Region (DISEMBL)
***********************KDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFHPMKFL
Disordered Region (DISPRO)
*******************TPKAKDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFHPM***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQDENTKAQVQSNEGNNKTPKAKDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFHPMKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	658	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.249	0.277	0.305	1e-11
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.372	0.460	0.241	6e-07

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 460 VENCVHPTLQDQLNDKDKTPREV--FTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVF 517
           ++N VH     QL    +T + V   +KE  KL  EG   + +   S +VVA L  T+ F
Sbjct: 382 IKNDVHI----QLEQTKRTNKNVHNISKELRKLHREG---INNATNSVTVVAVLFATVAF 434

Query: 518 AAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLV 577
           AA  TVPGG ++ G    +   SF IF I NALALF+S+  V++ + ++      E  +V
Sbjct: 435 AAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVV 494

Query: 578 SLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVI-IPTALLGFLPVFLFATLQF 636
            +  KL      ++ +  C  VAF A+ +I      +W   + T + G +   +  T+ +
Sbjct: 495 EVINKL------MWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTY 548

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 28/273 (10%)

Query: 369 EIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRI 428
           E+V  I+ + +   L  +++ G     +A    R ++ +++  F  I    + N  E  +
Sbjct: 210 EVVEEILQADYTI-LNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAM 268

Query: 429 NI----------LHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKT 478
           ++          L I    V +    G  +  + E +  K   + +   +Q QL   +KT
Sbjct: 269 DLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKT 328

Query: 479 PREV--FTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPG-----GSDSRG 531
            R V    KE  KL  E    +++T  S +VVA L  +I F A   +PG     GS   G
Sbjct: 329 NRRVSGIAKELRKLHREA---VQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHV-G 384

Query: 532 MPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLF 591
             N      F +F + NA +LF S+  V++ + ++      +  +VS+  KL      ++
Sbjct: 385 QANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKL------MW 438

Query: 592 FSIACLMVAFAATVHITQFHPWKWVIIPTALLG 624
            + AC   AF A           W+ I   LLG
Sbjct: 439 AACACTFGAFLAIAFAVVGKGNSWMAITITLLG 471

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
255544802	590	ankyrin repeat-containing protein, putat	0.835	0.932	0.367	1e-102
225464352	603	PREDICTED: uncharacterized protein LOC10	0.828	0.903	0.335	5e-90
296087932	655	unnamed protein product [Vitis vinifera]	0.872	0.876	0.355	1e-87
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.852	0.330	0.368	4e-87
255552378	580	ankyrin repeat-containing protein, putat	0.837	0.95	0.362	2e-86
225449665	810	PREDICTED: uncharacterized protein LOC10	0.848	0.688	0.353	6e-86
356532648	739	PREDICTED: uncharacterized protein LOC10	0.823	0.733	0.344	9e-85
9293890	653	unnamed protein product [Arabidopsis tha	0.890	0.897	0.327	2e-81
225449663	757	PREDICTED: uncharacterized protein LOC10	0.876	0.762	0.338	7e-81
296087936	750	unnamed protein product [Vitis vinifera]	0.889	0.78	0.334	2e-80

>gi|255544802|ref|XP_002513462.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223547370|gb|EEF48865.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/604 (36%), Positives = 329/604 (54%), Gaps = 54/604 (8%)

Query: 54  IMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY 113
           I  + P+ALT  I     I  ++          V  +++ +  + +    RD G+  +  
Sbjct: 27  IFDEDPSALTAKISGFEEIALYVAITAGHSIEFVQNIVNLMSEDLIGTVNRD-GNNALHA 85

Query: 114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLL 173
           A   G L     L+            KK+    +     +  P+H AA    ++ VR LL
Sbjct: 86  AAMVGNLEAAKILV------------KKNPTLTQGRNVLNATPLHYAASYAHQETVRFLL 133

Query: 174 PKTRE----PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKR 229
           P TR+    P   + G  LL  LI ++ + +AL LLK +P +AR         L+ L+++
Sbjct: 134 PVTRDEYPSPFTDKDGVRLLNSLITADFYGLALHLLKRYPALARGTDQYGFTSLDMLARK 193

Query: 230 PKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQ 289
           P+AF SGSRLG     LY +           H      GGD+E Q+  + K   K+F   
Sbjct: 194 PQAFPSGSRLGFRHSFLYHYCAANSVDTETFHQ-----GGDVENQVGGSEKYCQKRFSF- 247

Query: 290 KIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHE 349
                                      ++ I    ++H+Q +E+LR + + A+       
Sbjct: 248 ---------------------------LRDIDKTLLMHKQAVELLRNLISEALKA--NES 278

Query: 350 EAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNII 409
           +  ++       A + GI E V   + SY P+S+ F++ DG  IF +A++HR+EK+FN++
Sbjct: 279 QLHSLLGSSTQTATKFGIQEFVAEAIKSY-PYSVWFRDGDGCTIFHLAIKHRQEKIFNLL 337

Query: 410 FNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQ 469
           +   N      +  D     +LH+A    PS+++ GAALQMQRELQWFK VE  + P+ +
Sbjct: 338 YQIGNHKHIITSLADSLGNTMLHLAGTLQPSSKISGAALQMQRELQWFKEVEKVIQPSYK 397

Query: 470 DQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDS 529
           +  +   +TPR+VFT+ H+ LVE+GEKWMKDTA SC+ VA L++T+VFAAA TVPGG++S
Sbjct: 398 ELKDKNGRTPRQVFTEGHKSLVEQGEKWMKDTATSCATVAALVITVVFAAAFTVPGGNNS 457

Query: 530 -RGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLI 588
            +G+P +L E +F IF IS+AL LFSS  S+L+FLGILTSR+SE DFL +LP +L IGLI
Sbjct: 458 DQGIPIYLNETAFVIFAISDALGLFSSSTSLLMFLGILTSRYSEGDFLKALPMRLSIGLI 517

Query: 589 TLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYG 648
           TLFFSIA ++ AF+A  H+  FH  KW+ +P  L+   PV LFA LQFPLL E+ +ST+G
Sbjct: 518 TLFFSIASMLAAFSAAFHLVLFHRVKWIAVPIGLVACAPVTLFALLQFPLLSEMISSTFG 577

Query: 649 PGIF 652
             +F
Sbjct: 578 RSVF 581

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464352|ref|XP_002263244.1| PREDICTED: uncharacterized protein LOC100265216 [Vitis vinifera]

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 213/635 (33%), Positives = 329/635 (51%), Gaps = 90/635 (14%)

Query: 35  YKQVTRYILENDWKGLEDYIMSKTPNALTCII-VDQSSIFEFIVGIPDVPATLVDKLLSK 93
           Y ++ + +L  DW+     ++   P + +  I  D S +    V + +     V+KL+  
Sbjct: 33  YLELYKAVLNGDWESAPK-LLKDDPRSFSAPIGTDDSRMLHIAVELGEARMGFVEKLVEF 91

Query: 94  VPRNCLQNFARD-EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKD 152
           +P   L    RD +G+  +  A   G +  +  L+  N  LPNI             ++D
Sbjct: 92  MPSEALA--LRDSDGATALFNAARAGNIKAVKLLVNKNPSLPNIC------------QRD 137

Query: 153 DLLPVHMAAKAGKRDAVRHLLPKTRE-----PLDGRQGFVLLKFLIDSNLFDMALALLKC 207
           +  P+H A + G ++   +LL  TR+     P     GF LL+  +     D+AL L++ 
Sbjct: 138 NFAPLHSAVRYGHKELTLYLLSVTRDDEPPYPFSNSPGFELLRRALMVGFHDVALHLVER 197

Query: 208 HPMIARADIGETGKI------LESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPH 261
           +P +A  + G+          L  L+KRP AF SGSR   W+ ++Y              
Sbjct: 198 YPDLATCNFGDAKDSDDDKAPLTVLAKRPWAFRSGSRFNLWQLIIYHSC----------- 246

Query: 262 PPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIR 321
                                                 QK   + W  +  L P IK I+
Sbjct: 247 --------------------------------------QKANAIFWELIGWLVPPIKHIQ 268

Query: 322 DAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPW 381
           + K +H  TL++L  +C   + +      A+ +F++     A+ GI EI+  I+ SY P+
Sbjct: 269 ETKTMHTLTLQLLNHLCTEVLKV----SRAKKIFRQSFINGAKYGIPEILEEIIKSY-PY 323

Query: 382 SLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPST 441
           +LE+ ++D   +FK+AV +R EK+FN+I     ++   +   ++   NILH+A    P  
Sbjct: 324 ALEYLDED---VFKLAVLNRYEKIFNLICE-TGMHRQLIIRTEDDSNNILHLAGKLAPPH 379

Query: 442 E---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWM 498
               V GAALQMQREL WFK +E        +  N+ +  P+ VF KEHEKL++EGEKWM
Sbjct: 380 RLSLVSGAALQMQRELHWFKEIEKYAPRAFSESENNNEDKPKTVFIKEHEKLIKEGEKWM 439

Query: 499 KDTAGSCSVVATLIMTIVFAAAITVPGGS-DSRGMPNFLEEPSFTIFGISNALALFSSVI 557
           K TA   ++ A LI T+VFAAAIT+PGG+ D  G+PNF +E +F +F  S+AL+LF S+ 
Sbjct: 440 KGTAKCYALAAALIATVVFAAAITIPGGNHDDTGIPNFSKEKAFKVFAASDALSLFLSIA 499

Query: 558 SVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVI 617
           SVLI L ILT+R++E+DFL +LPR+LI GL+TLF S+  +M+A+++ +++       W++
Sbjct: 500 SVLICLSILTARYAEDDFLFALPRRLIFGLVTLFLSVTFMMIAYSSAIYLLFGEKKAWIL 559

Query: 618 IPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIF 652
              A L  LPV L+  LQFPLL+E+  STYGPGIF
Sbjct: 560 TTLAALACLPVTLYGILQFPLLVELIYSTYGPGIF 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087932|emb|CBI35215.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 335/639 (52%), Gaps = 65/639 (10%)

Query: 35  YKQVTRYILENDWKGLEDYIMSK--------TPNALTCIIVDQSSIFEFIVGIPDVPATL 86
           Y  + + +   +W  +ED + S         TP  LT + +        + G   V   L
Sbjct: 55  YAGLIKALDGGNWNAIEDSLRSNPDLVRAKITPTGLTPLHIAA------LAGHVRVVEKL 108

Query: 87  VDKLLSKVPRNCLQNFARDE---GSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDD 143
           VDKL         ++  + E   G   +  A S G   +   ++  N  L  I       
Sbjct: 109 VDKLKP-------EDLGQKEDLLGYTPLALAASDGITEIAQCMLTKNRTLAGI------- 154

Query: 144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE----PLDGRQGFVLLKFLIDSNLFD 199
                 + D++LPV +A   GK++  R L   T +    P  G+ G  LL   I S + D
Sbjct: 155 -----SDGDEMLPVVIACNRGKKEMTRFLYSHTPQEKLAPGQGKNGASLLSNCIASQILD 209

Query: 200 MALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPH 259
           +AL +LK HP +A +   E    +  L + P  F SGS+L  W+R +Y  IP++ ++   
Sbjct: 210 VALDILKKHPRLAISLDMERIIPIFVLGQMPSLFKSGSQLWFWQRWIYSCIPVKVDH--- 266

Query: 260 PHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKS 319
               S+ +      Q++V    Q  +            L   + ++L   L+     IK+
Sbjct: 267 ---ASDQI------QVNVADDTQHSRDVKNNTAKVLRHLYGPVSYLL--QLL----GIKN 311

Query: 320 IRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYF 379
           I   K+ H Q  E+L+ +C   +  +N            + +A + G  +     M  Y 
Sbjct: 312 IYAKKLRHAQATELLQCIC-NEIQKVNVEGTLGLRLHHTVIQAVKQGNVDFATE-MIKYT 369

Query: 380 PWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFM-ANIDEKRINILHIAAMSV 438
           P  ++  + +  +IF +A+ +R+EK+F+++    N+    M +N+D    N+LH+AAM  
Sbjct: 370 PQLVQKTDINDRNIFFIAILNRQEKIFSLLHGLNNVKKMKMTSNVDRFGNNMLHLAAMLA 429

Query: 439 PSTE---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGE 495
           P+ +   + GAALQMQRELQWFK VE+ V P  +D +N   K P E+FT++H  LV+EGE
Sbjct: 430 PANQLDGISGAALQMQRELQWFKEVESIVPPICKDLVNADGKRPSELFTEQHANLVKEGE 489

Query: 496 KWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSS 555
           KWMKD A S S VA LI+TI+FAAA T+PGG+D  G P FL    F +F IS++++LFS+
Sbjct: 490 KWMKDIAASSSFVAALIVTIMFAAAFTIPGGNDDTGAPIFLGNDLFMVFIISDSISLFSA 549

Query: 556 VISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHI-TQFHPWK 614
             SVL+FLGILTS+++E  FL  LP KLIIGL TLFFSIA +M+AF A + I  +    K
Sbjct: 550 TTSVLMFLGILTSQYAENKFLTRLPTKLIIGLSTLFFSIATMMIAFCAALAILLKGRSTK 609

Query: 615 WVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFH 653
            VIIP  LL  +PV LF  LQFPLL+E+F STYGPGIF+
Sbjct: 610 VVIIPIILLACVPVTLFVLLQFPLLVEIFISTYGPGIFN 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 232/629 (36%), Positives = 325/629 (51%), Gaps = 68/629 (10%)

Query: 43  LENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKL--LSKVPRNCLQ 100
           L  DWK  + ++ S  P A+   I  +S     I          V++L  L K     LQ
Sbjct: 183 LNGDWKSAKAFLES-NPQAVRARITRRSETALHIAAGAR-HTRFVEELVKLMKPDDLALQ 240

Query: 101 NFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMA 160
           N     G+  + +A ++G   +   ++  N ELP I+  K             + P++MA
Sbjct: 241 NKV---GNTALCFAAASGITRIAEVMVNKNRELPMIRGSKG------------VTPLYMA 285

Query: 161 AKAGKRDAVRHLLPKTREP-LDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGET 219
           A  G +D VR+L   T E  L       LL   I +NLFD+AL +L   P +A A  G  
Sbjct: 286 ALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNG 345

Query: 220 GKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTS 279
              L  L+++P AF SG        LLY                            +   
Sbjct: 346 DTALHVLARKPLAFYSGRARQRGVFLLYS---------------------------ATKG 378

Query: 280 KIQLKKFFLQKIPSA----FGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILR 335
           +++L    ++ + SA    F     +  F L   L    P  KS+ D K++H Q LE+++
Sbjct: 379 EVRLCLNVIRSLCSASTHVFYXFNSQTYFGL---LPHAVPGFKSVYDKKLMHIQALELVQ 435

Query: 336 IMCAGAVDILNTHEEAQNVFKKP---MFKAARLGIYEIVMGIMNSY--FPWSLEFKNKDG 390
            +    +  L+   +   + + P   +F AA LGI E +  ++ SY    W +   N   
Sbjct: 436 QLWDKILS-LDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKV---NDQS 491

Query: 391 YDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEV---PGAA 447
             IF VAV HR+EK+FN+I+       +  A  DEK  N+LH+A    PS  +    GAA
Sbjct: 492 QTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAA 551

Query: 448 LQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSV 507
            Q+QREL WFK VE  + P+  +  N++ +TP+ +FT+EH+ LV EGEKWMKDTA SC V
Sbjct: 552 FQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMV 611

Query: 508 VATLIMTIVFAAAITVPGGSDS-RGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGIL 566
           VATLI T++FAAA +VPGG+D   G P FL + SF +F IS+ALALFSS  S+LIFL IL
Sbjct: 612 VATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSIL 671

Query: 567 TSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFL 626
           TSR++EEDFL SLP +LIIGL TLF S+A +M+AF AT+ I       WV  P AL+  +
Sbjct: 672 TSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACV 731

Query: 627 PVFLFATLQFPLLIEVFASTYGPG-IFHP 654
           PV LF  L+FPL I++ +  Y    IF P
Sbjct: 732 PVTLFPLLKFPLFIDMISHRYRSSIIFRP 760

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552378|ref|XP_002517233.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543604|gb|EEF45133.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 223/616 (36%), Positives = 325/616 (52%), Gaps = 65/616 (10%)

Query: 45  NDWKGLEDYIMSKTPNALTCII-VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFA 103
            DW+  + + +   P+ALT  +  D  +     V    V   +V++LL+ +    L+   
Sbjct: 13  GDWEAAKKF-LEDHPDALTASLSADGDTALHVAVLAGHV--EIVEELLTLLDAEDLEMKN 69

Query: 104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKA 163
           ++  +  + YA   G   +   L+   + L +I       PN     ++ L+PV +A+  
Sbjct: 70  KNNATA-LNYAAIGGITRIAEGLVNSRKNLLSI-------PN-----QNGLIPVVVASLY 116

Query: 164 GKRDAVRHLL---PKTR-EPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGET 219
           G +D  R+L    PK    P  G+ G +LL   I  +L+D+AL LL+ +P +A     + 
Sbjct: 117 GHKDMARYLYKESPKGELSPEKGKNGIMLLTTCIVDDLYDIALDLLQNYPELAYHQDSDK 176

Query: 220 GKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTS 279
              LE L+++P AF SGS L  W+ +            P   P S    GD+E   S   
Sbjct: 177 DTALEMLAQKPSAFPSGSTLPLWQSIRV----------PESQPSS---NGDIESPRSGRL 223

Query: 280 KIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCA 339
             +     +                          P ++ + + K+ H Q  E+L  +C 
Sbjct: 224 IRRNIIRRV--------------------------PGLEYLYNLKLTHVQAHELLCCLCQ 257

Query: 340 GAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVE 399
               +  +  E   V+ + +FKA + G  E V   M  ++P  +  +++    IF  AV 
Sbjct: 258 EISTLHKSEFENIGVY-RAIFKAVKHGTVEFVEE-MTKHYPDIIWCEDECNRGIFMYAVL 315

Query: 400 HRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTE---VPGAALQMQRELQW 456
            R+EKVFN+I+           + D+   NILH AA   PS++   V GAALQMQRELQW
Sbjct: 316 QRQEKVFNLIYKMGAKKNSIATSWDKYFNNILHQAASPPPSSQLDRVSGAALQMQRELQW 375

Query: 457 FKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIV 516
           +K VE+ V P  ++ +N + KTPR +FT+ H+KLVEEGEKWMKDTA S +VVA LI TI+
Sbjct: 376 YKEVESIVQPKYKEMVNFQRKTPRALFTESHKKLVEEGEKWMKDTATSSTVVAALIATIM 435

Query: 517 FAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFL 576
           F+A  TVPGG D  G P +L E  F +F +++A++LF+S  S+L+FLGILT+R+ EEDFL
Sbjct: 436 FSAIFTVPGGYDQYGKPLYLYEGVFMVFMVADAMSLFASTSSILMFLGILTARYREEDFL 495

Query: 577 VSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFLFATLQF 636
            SLP KLI+GL TLFFSIA +M+ F   +         WV+ P  LL  LPV LFA LQF
Sbjct: 496 KSLPTKLIVGLSTLFFSIATMMITFGVALFTFLRERVSWVLFPIILLASLPVTLFALLQF 555

Query: 637 PLLIEVFASTYGPGIF 652
           PLL+E+F STYG GIF
Sbjct: 556 PLLVEIFFSTYGLGIF 571

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449665|ref|XP_002263931.1| PREDICTED: uncharacterized protein LOC100245348 [Vitis vinifera]

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 226/639 (35%), Positives = 328/639 (51%), Gaps = 81/639 (12%)

Query: 35  YKQVTRYILENDWKGLEDYIMSK--------TPNALTCIIVDQSSIFEFIVGIPDVPATL 86
           Y  + + +   +W  +ED + S         TP  LT + +        + G   V   L
Sbjct: 226 YAGLIKALDGGNWNAIEDSLRSNPDLVRAKITPTGLTPLHIAA------LAGHVRVVEKL 279

Query: 87  VDKLLSKVPRNCLQNFARDE---GSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDD 143
           VDKL         ++  + E   G   +  A S G   +   ++  N  L  I       
Sbjct: 280 VDKLKP-------EDLGQKEDLLGYTPLALAASDGITEIAQCMLTKNRTLAGI------- 325

Query: 144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE----PLDGRQGFVLLKFLIDSNLFD 199
                 + D++LPV +A   GK++  R L   T +    P  G+ G  LL   I S + D
Sbjct: 326 -----SDGDEMLPVVIACNRGKKEMTRFLYSHTPQEKLAPGQGKNGASLLSNCIASQILD 380

Query: 200 MALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPH 259
           +AL +LK HP +A +   E    +  L + P  F SGS+L  W+R +Y  IP++ ++   
Sbjct: 381 VALDILKKHPRLAISLDMERIIPIFVLGQMPSLFKSGSQLWFWQRWIYSCIPVKVDHASD 440

Query: 260 PHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKS 319
                 NV  D +    V                              NN    A  IK+
Sbjct: 441 QI--QVNVADDTQHSRDVK-----------------------------NNT---AKGIKN 466

Query: 320 IRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYF 379
           I   K+ H Q  E+L+ +C   +  +N            + +A + G  +    ++  Y 
Sbjct: 467 IYAKKLRHAQATELLQCIC-NEIQKVNVEGTLGLRLHHTVIQAVKQGNVDFATEMIK-YT 524

Query: 380 PWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFM-ANIDEKRINILHIAAMSV 438
           P  ++  + +  +IF +A+ +R+EK+F+++    N+    M +N+D    N+LH+AAM  
Sbjct: 525 PQLVQKTDINDRNIFFIAILNRQEKIFSLLHGLNNVKKMKMTSNVDRFGNNMLHLAAMLA 584

Query: 439 PSTE---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGE 495
           P+ +   + GAALQMQRELQWFK VE+ V P  +D +N   K P E+FT++H  LV+EGE
Sbjct: 585 PANQLDGISGAALQMQRELQWFKEVESIVPPICKDLVNADGKRPSELFTEQHANLVKEGE 644

Query: 496 KWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSS 555
           KWMKD A S S VA LI+TI+FAAA T+PGG+D  G P FL    F +F IS++++LFS+
Sbjct: 645 KWMKDIAASSSFVAALIVTIMFAAAFTIPGGNDDTGAPIFLGNDLFMVFIISDSISLFSA 704

Query: 556 VISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHI-TQFHPWK 614
             SVL+FLGILTS+++E  FL  LP KLIIGL TLFFSIA +M+AF A + I  +    K
Sbjct: 705 TTSVLMFLGILTSQYAENKFLTRLPTKLIIGLSTLFFSIATMMIAFCAALAILLKGRSTK 764

Query: 615 WVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFH 653
            VIIP  LL  +PV LF  LQFPLL+E+F STYGPGIF+
Sbjct: 765 VVIIPIILLACVPVTLFVLLQFPLLVEIFISTYGPGIFN 803

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max]

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 220/638 (34%), Positives = 340/638 (53%), Gaps = 96/638 (15%)

Query: 26  EKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVP-- 83
           +K+  ++  Y  + R  L+ DW+   ++ ++  P A   +I   S  +E  + I      
Sbjct: 185 DKVPMNLHMYLPLYRASLKGDWEKANEF-LNLHPGAENAMI---SRGWETALHISAGARR 240

Query: 84  ATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDD 143
              V++L+ ++    L+   +D  +  + +A ++G   +   ++  N  LP I+      
Sbjct: 241 TKFVEELVKRMRTTDLEIQNKDNNTA-LCFAAASGVTKIAKLMVDRNRNLPVIR------ 293

Query: 144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT-REPLDGRQGFVLLKFLIDSNLFDMAL 202
                   + + P+++A   G+RD V +L   T  E L     F LL   I ++L+D AL
Sbjct: 294 ------GSEGVTPLYIATLLGQRDMVWYLYSVTNHEILKTEDYFSLLIAAISTDLYDFAL 347

Query: 203 ALLKCHPMIA--RADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHP 260
            +L+C P +A      GET   L  L+K+P +F SG +LG W+R +Y            P
Sbjct: 348 HVLECQPQLATYHGLNGETA--LHVLAKKPSSFTSGIQLGIWERCIY------------P 393

Query: 261 HPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSI 320
            P  E V    +K+ ++ +                    Q LK V    L EL  S   I
Sbjct: 394 LPGFEAV----QKKKTLNA--------------------QALKLV--QRLWELIVSSDEI 427

Query: 321 RDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSY-- 378
           +   +I                         ++   +P+F AA  GI EIV+ ++ SY  
Sbjct: 428 QHGDLI-------------------------KSPLSRPLFIAAESGIPEIVIELLYSYPD 462

Query: 379 FPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSV 438
             W ++ +N+    +F +A+ HR+EK+FN+I++         +  D    NILH+A    
Sbjct: 463 LLWKVDGQNR---SLFHIAIMHRQEKIFNLIYDIGAHKDLITSYRDNNNHNILHLAGKLA 519

Query: 439 PSTE---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGE 495
           PS +   V GAALQMQREL WFK VE  + P  ++  + + +TP+ +FT+EH++L +EGE
Sbjct: 520 PSEQLHVVSGAALQMQRELLWFKEVEKIIQPLFKEIKDSQGRTPQMLFTEEHKELAKEGE 579

Query: 496 KWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGM-PNFLEEPSFTIFGISNALALFS 554
           KW+K+TA SC +VATLI T++FAA  TVPGG+++    P F+   SF +F +S+ALALFS
Sbjct: 580 KWLKNTASSCMLVATLITTVMFAAIFTVPGGNNNNNGYPIFMHTTSFKVFALSDALALFS 639

Query: 555 SVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWK 614
           SVISVL+FL ILTSR+++EDFLVSLPR+L +G+ TLFFSI  +++AF AT  I   H   
Sbjct: 640 SVISVLMFLSILTSRYAQEDFLVSLPRRLSVGIATLFFSIITMLIAFGATFFIVLGHQLA 699

Query: 615 WVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIF 652
           W++IPT L+  +P  LFA LQFPLL++  + TYG G+F
Sbjct: 700 WIVIPTTLVACIPAILFALLQFPLLVDTISCTYGAGVF 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9293890|dbj|BAB01793.1| unnamed protein product [Arabidopsis thaliana]

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 212/648 (32%), Positives = 333/648 (51%), Gaps = 62/648 (9%)

Query: 24  KDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVP 83
           KDE I ++  +Y  + + I   + +  +D+ + + P ALT I+            +    
Sbjct: 40  KDE-IRQENSTYLVLFKNIDSGELEATKDF-LDRNPEALTAILTSNGDT-PIHKAVLSGH 96

Query: 84  ATLVDKLLSKV--PRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKK 141
             +V++++ ++  P   L+    D G   + YA + G + +   L+     L +++  K+
Sbjct: 97  IKIVEEIIRRIHDPEQVLK-IKNDNGYTALTYAATGGIVRIAECLVNKCPGLVSVRNAKE 155

Query: 142 DDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT----REPLD------GRQGFVLLKF 191
                        +P+ +A+  G +  V++L   T     +P D      G+ G +L+  
Sbjct: 156 H------------IPIVVASLYGHKHLVQYLYSHTPLSDLDPCDDSDEHKGKNGAMLVTN 203

Query: 192 LIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIP 251
            I   L+ +AL L++ +P +A     +    + +L++ P AF SG+RL  W+R +Y  I 
Sbjct: 204 CIVDGLYCIALDLIQRYPKLAYTRDSDNDTAIMALAQTPYAFPSGTRLAFWQRWIYSCIH 263

Query: 252 IQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLM 311
           I                   EK  +             +      S+++KL      +L 
Sbjct: 264 I-------------------EKINNPHEVNNHHHHHQYRNSQDHNSIQEKL----MKHLK 300

Query: 312 ELAPSI-KSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEI 370
            L P I + +   K+ H Q  EIL  +C   +   +  ++      + +FKA   GI E 
Sbjct: 301 YLFPRIIRRVYKLKLGHAQAKEILDCICQ-EIPKFDAAQQKNAGLNQALFKAVENGIVEY 359

Query: 371 VMGIMNSY--FPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRI 428
           +  +M  Y    WS   KN  G +IF  AV  R+EK+F++I+N          N D    
Sbjct: 360 IEEMMRHYPDIVWS---KNSSGLNIFFYAVSQRQEKIFSLIYNIGAKKNILATNWDIFHN 416

Query: 429 NILHIAAMSVPSTE---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDK-TPREVFT 484
           N+LH AA   P++    +PGAALQMQRELQWFK VE  V P  +  +N K K TP+ +FT
Sbjct: 417 NMLHHAAYRAPASRLNLIPGAALQMQRELQWFKEVEKLVQPKHRKMVNLKQKKTPKALFT 476

Query: 485 KEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIF 544
            +H+ LVE+GEKWMK+TA SC+VVA LI T++F++A TVPGG  S GMP ++ +  F IF
Sbjct: 477 DQHKDLVEQGEKWMKETATSCTVVAALITTMMFSSAFTVPGGYRSDGMPLYIHQHRFKIF 536

Query: 545 GISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAAT 604
            IS+A++LF+S +S+L+FLGIL SR+ EEDFL SLP KLI+GL+ LF S+A ++V F  T
Sbjct: 537 LISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLLALFLSMATMIVTFVVT 596

Query: 605 VHITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIF 652
           +         WV      L  +P+ +F  LQFP+L+E+F +TY P +F
Sbjct: 597 LMTLVGEKISWVSAQFMFLAVIPLGMFVVLQFPVLLEIFRATYCPNVF 644

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449663|ref|XP_002263810.1| PREDICTED: uncharacterized protein LOC100260956 [Vitis vinifera]

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 219/647 (33%), Positives = 335/647 (51%), Gaps = 70/647 (10%)

Query: 17  NNKTPKAKDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFI 76
           + ++P A       D   Y++  + +    W  +E ++ S  P+A+   I   + +    
Sbjct: 162 DEQSPPAAASTGNADFSQYEKFEQALDRGSWSDIESFLNSN-PDAVRARI-SPTGLTPLH 219

Query: 77  VGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNI 136
           V        +V+KL+ K+    L+      G   +  A S G   +  +++  N  L NI
Sbjct: 220 VAALAGHVKVVEKLVDKLNPEDLEEKEDLLGCTPLALAASDGITEIAQSMIRKNRTLANI 279

Query: 137 KVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE----PLDGRQGFVLLKFL 192
                        + D +LPV +A   GKR+    L   T +    P +G+ G  LL + 
Sbjct: 280 ------------SDGDKILPVVLACNRGKREMTCFLYFHTGQEELAPANGKNGATLLSYY 327

Query: 193 IDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPI 252
           I       AL +L+ +P +A     ++   L  L + P  F SGS+L  W+  +Y     
Sbjct: 328 I-------ALDILEKYPSLAVTLDMDSLIPLYVLGQTPSLFKSGSQLWFWQHWIY----- 375

Query: 253 QEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLME 312
                                 L VT  I     +++       +  + ++    NN   
Sbjct: 376 ----------------------LCVTINIDRASDWVRVNVVDDNTHSRDVR----NNT-- 407

Query: 313 LAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVM 372
               IKSIR  K+ H Q +++L+ +C    +I         V +  + +A + G  E V 
Sbjct: 408 -ETGIKSIRAQKLRHAQAVKLLQGICTELRNIKPDRVLGYRVHQA-VIQAVKKGNVEFVT 465

Query: 373 GIMNSY--FPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEK-RIN 429
            ++ S     W+ +  +++   IF +A+ +R+EK+FN++    N+    + + D++   N
Sbjct: 466 RMIKSIPELVWNGDINDRN---IFSIAILNRQEKIFNLLHGLTNVKKMKVTSADDRFGNN 522

Query: 430 ILHIAAMSVPSTE---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKE 486
           +LH+AAM  PS +   + GAALQMQRELQWFK VE+ V P  +D LN   K P EVF+++
Sbjct: 523 MLHLAAMLAPSDQLDGISGAALQMQRELQWFKEVESIVPPICKDVLNSDGKKPSEVFSQQ 582

Query: 487 HEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFTIFGI 546
           H  LV+EGEKWMK+ A S S VA LI+TI+FAAA T+PGG++ +G P FL++P F +F I
Sbjct: 583 HANLVKEGEKWMKEIATSSSFVAALIVTIMFAAAFTIPGGNNDKGAPIFLDDPLFMVFII 642

Query: 547 SNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVH 606
           S++++LFS+  SVL+FLGILTS+++E  FL  LP KLIIGL TLF  IA +M+AF A + 
Sbjct: 643 SDSISLFSATTSVLMFLGILTSQYAENKFLTRLPTKLIIGLSTLFICIAAMMIAFCAALA 702

Query: 607 I-TQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIF 652
           I  +    K V+IP  LL  +PV LFA LQFPLL+ +F STYGPGIF
Sbjct: 703 ILLKKSSTKVVMIPIILLACVPVTLFALLQFPLLVNIFISTYGPGIF 749

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087936|emb|CBI35219.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 218/651 (33%), Positives = 337/651 (51%), Gaps = 66/651 (10%)

Query: 20  TPKAKDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGI 79
           +P A       D   Y+ + + +    W  +E +  +K P  ++  I  +       + +
Sbjct: 140 SPAASASTGNVDFSQYQGLIKALNRGRWNDIESF-FNKNPGTVSAKISPKGET-ALHIAV 197

Query: 80  PDVPATLVDKLLSKV-PRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKV 138
                 +V++L+ K+ P++  Q    +EG   +  A   G   +   ++  N EL +I  
Sbjct: 198 RAGHVKVVEELVKKLSPKDLKQE--NNEGRTPLALAALNGFKEIAQCMIKKNTELTSIL- 254

Query: 139 EKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLL----PKTREPL--DGRQGFVLLKFL 192
                      +K+ +LPV  A   GK++  R L     PK + P   +G+ G  LL + 
Sbjct: 255 -----------DKEGILPVVRACNRGKKEVTRLLYNYTPPKEQGPKKGEGKNGATLLVYC 303

Query: 193 IDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPI 252
           I +   D+AL +L+ HP +A     +    L  L ++P  F SGS+L  W+R +Y  I +
Sbjct: 304 IATKFLDIALHILEKHPSLAVTFNKDGVSPLYVLGQKPSLFKSGSQLWFWQRWIYSCISV 363

Query: 253 QEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLME 312
             +        S+ +      Q++V   I   +            L+     V++N    
Sbjct: 364 NVDC------ASDWI------QINVVDDIAQGRDDRNNTKKGMSLLQIDNFKVVFN---- 407

Query: 313 LAPSIKSIRDAKIIHEQTLEILRIMCAG----AVDILNTHEEAQNVFKKPMFKAARLGIY 368
                  I D K+ H Q ++IL  +C       VD+L           + +F+A + G  
Sbjct: 408 -------IHDQKLRHAQAIKILGSICIELQNMKVDVLGFQ------VHQAVFQAVKRGNV 454

Query: 369 EIVMGIMNSY--FPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPF-FMANIDE 425
           E V  ++ S     WS +    +G +IF +A+ +R+EK+FN++    +      ++ +D 
Sbjct: 455 EFVTEMIKSIPELAWSHDI---NGRNIFFIAILNRQEKIFNLLHGLTHAQKMKVISPLDR 511

Query: 426 KRINILHIAAMSVPSTE---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREV 482
            R N+LH+ AM  PS +   + GAALQMQRELQWFK VE+ V P  +D  N   K   EV
Sbjct: 512 FRNNMLHLVAMLAPSEQLDGISGAALQMQRELQWFKEVESIVPPLFKDLTNSDGKKASEV 571

Query: 483 FTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDSRGMPNFLEEPSFT 542
           F+++H  LV+EGEKWMK+ A S + VA LI+TI+FAAA T+P G++ +G P FL++  F 
Sbjct: 572 FSQQHADLVKEGEKWMKEIATSSTFVAALIVTIMFAAAFTIPAGNNDKGAPIFLDDTFFI 631

Query: 543 IFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFA 602
           +F IS++++LFS+  SVL+FLGILTS ++E  FL  LP KLIIGL  LF SIA +M+AF 
Sbjct: 632 VFIISDSISLFSATTSVLMFLGILTSVYAENKFLTRLPTKLIIGLSALFISIAAMMIAFC 691

Query: 603 ATVHI-TQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIF 652
           A + +  +    K V+IP  LL  +PV LFA LQFPLL+ +F STYGPGIF
Sbjct: 692 AALAVLLKESSTKVVMIPIILLACVPVTLFALLQFPLLVNIFISTYGPGIF 742

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	658
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.507	0.553	0.409	1.3e-63
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.741	0.729	0.350	1e-61
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.506	0.532	0.397	6.1e-55
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.451	0.517	0.368	7.8e-54
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.469	0.890	0.385	4.6e-50
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.252	0.281	0.303	3.5e-10
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.220	0.238	0.307	9.1e-10
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.215	0.221	0.325	4.6e-09
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.262	0.318	0.272	2.1e-08
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.215	0.230	0.283	1.9e-06

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 141/344 (40%), Positives = 199/344 (57%)

Query:   317 IKSIRDAKIIHEQTLEILRIMCAGAVDILNTHE-EAQNVFKKPMFKAARLGIYEIVMGIM 375
             IK   D K  H Q  ++L+ MC    DI+  +E   +    + + +AA+ G  +  + I+
Sbjct:   255 IKQTYDLKKRHSQAQKLLKQMCTSLRDIMAKNEIRWKETVYEALLEAAKSGNRDFFIEII 314

Query:   376 --NSYFPWSLEFKNKDGYDIFKVAVEHRREKVXXXXXXXXXXXXXXMANIDEKRINILHI 433
               NS   W L      G ++F++AVE ++EK+              + + D+   NILHI
Sbjct:   315 KCNSQLLWILN--PTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSYDKGNNNILHI 372

Query:   434 AA-MSVPS--TEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKL 490
             A  +S P   +++ GAAL+MQRE QWFK VE+ V      Q N  +KTPR++F   HE L
Sbjct:   373 AGRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHL 432

Query:   491 VEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSD-SRGMPNFLEEPSFTIFGISNA 549
              +EGE+WMK TA +CS VA LI T+ F A  TVPGG D + G P  L +  F  F  ++ 
Sbjct:   433 RKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDT 492

Query:   550 LALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQ 609
             LA F+S ISVLIFL ILTSR+S +DF+VSLPRK+I+G   LF SIA ++VAF  ++  + 
Sbjct:   493 LAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSASM 552

Query:   610 FHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIFH 653
              H    ++ P   L   P  LF  LQ+PLL E+ +STYG  +F+
Sbjct:   553 RHK-PALVYPLKPLASFPSLLFLMLQYPLLKEMISSTYGKRLFY 595

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 181/516 (35%), Positives = 268/516 (51%)

Query:   156 PVHMAAKAGKRDAVRHLLPKTREPLD--GRQGFVLLKFLIDSNLFDMALALLKCHPMIAR 213
             P+ + A +G  +    L+ K  + L+  G  G + +   +++   +MA  L    P+   
Sbjct:   155 PLTVVAVSGNMEIAEALVAKNPKLLEIPGINGQIPVVVAVENTQMEMARYLYTRTPVQVL 214

Query:   214 ADI-GETGKIL-------ESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSE 265
              D  G  G +L       + L      F    RL   K    + IPI    +     P  
Sbjct:   215 LDQDGYHGSLLFLNAIFYKMLDIALDLFNMSRRLAVTKHSQIESIPIIVLASKPDLFPGG 274

Query:   266 NVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAP--SIKSIRDA 323
                G L +   + S IQ+K   L  +P    S R +   ++   L  L+    I  +   
Sbjct:   275 CYLGPLTR--FIYSWIQVK---LPTLPQPSRSNRDQQNTLMRKLLKGLSKWTGIDEVYRL 329

Query:   324 KIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIM--NSYFPW 381
             K++H Q  ++L  +    +  L   E ++ V +  +F A R G  + ++ ++  NS   W
Sbjct:   330 KVMHLQAKKLLLGISEETL-ALGLKERSETVDEALLF-AVRYGNVDFLVEMIRNNSELLW 387

Query:   382 SLEFKNKDGYDIFKVAVEHRREKVXXXXXXXXXXXXXXMANIDEKRINILHIAAM-SVPS 440
             S   +      +F +AVE R+EKV              +A+ D     +LH+A   S PS
Sbjct:   388 ST--RTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLADKDCDGNGVLHLAGFPSPPS 445

Query:   441 --TEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWM 498
               + V GA LQ+QRELQWFK VE       ++++N +++TP E+FTKEH+ L +E EKWM
Sbjct:   446 KLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWM 505

Query:   499 KDTAGSCSVVATLIMTIVFAAAITVPGGSD--SRGMPNFLEEPSFTIFGISNALALFSSV 556
             KDTA SCS+VA LI+T+ FAA  TVPGG+D  S+G P  L +  F IF +S+ ++ F+S 
Sbjct:   506 KDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASC 565

Query:   557 ISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWV 616
              SVLIFLGILT+R+S +DFLV LP K+I GL  LF SIA +++AF++ +        KW+
Sbjct:   566 TSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWI 625

Query:   617 IIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIF 652
             + PT L   LP  LF  LQ+PLL E+  STYG GIF
Sbjct:   626 VAPTILFACLPALLFVLLQYPLLKEMIFSTYGKGIF 661

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 139/350 (39%), Positives = 201/350 (57%)

Query:   317 IKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIM- 375
             I  +   K++H Q  ++L+ +    +  L   E +++V +  +F A R G  + ++ ++ 
Sbjct:   284 IDEVYRLKVMHLQAKKLLKGISEETL-ALGLKERSESVDEALLF-AVRYGNVDFLVEMIK 341

Query:   376 -NSYFPWSLEFKNKDGYDIFKVAVEHRREKVXXXXXXXXXXXXXXMANIDEKRINILHIA 434
              NS   WS          +F  AV+ R+EKV              +A+ D    ++LH+A
Sbjct:   342 NNSELLWSTGTST-----LFNTAVQVRQEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLA 396

Query:   435 AMSVPSTE---VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLV 491
                 P+ +   V  A LQMQRELQWFK +E  V     +++N ++ TP E+F KEHE + 
Sbjct:   397 GYPPPNYKLATVVSATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMR 456

Query:   492 EEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSD--SRGMPNFLEEPSFTIFGISNA 549
              E EKWMKDTA SCS+VA LI+T+ FAA  TVPGG+D  S G P    E  F IF +S+ 
Sbjct:   457 LEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDL 516

Query:   550 LALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQ 609
             ++ F++  SVLIFLGILT+R++ +DFL SLP  +I GL TLF SIA ++VAF++ +  T 
Sbjct:   517 ISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSAL-FTI 575

Query:   610 FHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFASTYGPGIF-HPMKFL 658
             F+   W++ PT      P  LF  +Q+PLL E+  STYG  IF   MK L
Sbjct:   576 FND-PWIVAPTIFFACFPALLFVMIQYPLLKELIFSTYGKRIFDRNMKSL 624

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 118/320 (36%), Positives = 180/320 (56%)

Query:   347 THEEAQNVFKKP-----MFKAARLGIYEIVMGIMNSYFP--WSLEFKNKDGYDIFKVAVE 399
             +H+   N+F++      +F AA LG  EI++ ++ S+    W ++  N+    +F VA  
Sbjct:   242 SHKSQLNLFQQVASSWLLFDAAELGNVEILVILIRSHLDLLWIVDNNNRT---LFHVAAL 298

Query:   400 HRREKVXXXXXXXXXXXXXXMANIDEKRIN--ILHIAAMSVPST--EV-PGAALQMQREL 454
             +R E +              +A+  EK+    +LH+ A   P    +V  GAAL MQ+EL
Sbjct:   299 YRHENIFSLIYELGGIKDL-IASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKEL 357

Query:   455 QWFKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMT 514
              WFKAV+  V  +  +  N K +   ++FT++HE L +EGE+WMK+TA +C + ATLI T
Sbjct:   358 LWFKAVKEIVPRSYIETKNTKGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIAT 417

Query:   515 IVFAAAITVPGGSDSRG-------MPNFLEEPSFTIFGISNALALFSSVISVLIFLGILT 567
             +VFAAAIT+PGG+D  G        PNF +   F IF +S+++ALFSS++S++IFL I T
Sbjct:   418 VVFAAAITIPGGNDDSGDKANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFT 477

Query:   568 SRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLP 627
             SR++EEDF   LP KL+ GL  LF SI  +++AF  ++ + +       ++  + L  L 
Sbjct:   478 SRYAEEDFRYDLPTKLMFGLSALFISIISMILAFTFSMILIRVEKASLSLVLISCLASLT 537

Query:   628 VFLFATLQFPLLIEVFASTY 647
                FA L F L      S Y
Sbjct:   538 ALTFAYLYFHLWFNTLRSVY 557

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 126/327 (38%), Positives = 183/327 (55%)

Query:   345 LNTHEEAQNVFKKPM--FKAARLGIYEIVMGIMNSY--FPWSLEFKNKDGYDIFKVAVEH 400
             L   E +Q V   PM  F AA+ G  E+++ ++ SY    W+++ KN+    +F +A  +
Sbjct:    19 LPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWTVDHKNQS---LFHIAAIN 75

Query:   401 RREKVXXXXXXXXXXXXX-XMANIDEKRINILHIAAMSVPSTE---VPGAALQMQRELQW 456
             R EK+               M    E   N+LH+ A   P      V GAALQMQRE+ W
Sbjct:    76 RHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQVVSGAALQMQREILW 135

Query:   457 FKAVENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIV 516
             +KAV+  V        N K++   ++FTKEH+ L +EGEKWMK+TA +C +V+TLI T+V
Sbjct:   136 YKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVV 195

Query:   517 FAAAITVPGGSDSRG------MPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRF 570
             FAAA T+PGG+D+ G       P F +E  F +F IS+++AL SSV S++IFL ILTSR+
Sbjct:   196 FAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRY 255

Query:   571 SEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLGFLPVFL 630
             +E  F  +LP KL++GL+ LF SI  +++AF AT+ + +    KW +I    +       
Sbjct:   256 AEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALS 315

Query:   631 FATLQFPLLIEVFASTY-GPGIFHPMK 656
             F  L F L  +   S Y    +FH  K
Sbjct:   316 FVVLHFQLWFDTLRSAYLSKFLFHGRK 342

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
 Identities = 54/178 (30%), Positives = 88/178 (49%)

Query:   460 VENCVHPTLQDQLNDKDKTPREVFTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAA 519
             ++N VH  L+ Q    +K    + +KE  KL  EG   + +   S +VVA L  T+ FAA
Sbjct:   382 IKNDVHIQLE-QTKRTNKNVHNI-SKELRKLHREG---INNATNSVTVVAVLFATVAFAA 436

Query:   520 AITVPGGSDSRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSL 579
               TVPGG ++ G    +   SF IF I NALALF+S+  V++ + ++      E  +V +
Sbjct:   437 IFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEV 496

Query:   580 PRKLIIGLITLFFSIACLMVAFAATVHITQFHPWKWVI-IPTALLGFLPVFLFATLQF 636
               KL      ++ +  C  VAF A+ +I      +W   + T + G +   +  T+ +
Sbjct:   497 INKL------MWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTY 548

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
 Identities = 48/156 (30%), Positives = 76/156 (48%)

Query:   471 QLNDKDKTPREV--FTKEHEKLVEEGEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSD 528
             QL    KT + V    KE  KL   G   + +   S +VVA L  T+ FAA  TVPGG D
Sbjct:   403 QLEQTRKTNKNVDGIAKELRKLHRAG---INNATNSVTVVAVLFATVAFAAIFTVPGGDD 459

Query:   529 SRGMPNFLEEPSFTIFGISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLI 588
               G+   +   SF IF I NA+ALF+S+  V++ + ++      E  +V +  KL     
Sbjct:   460 DHGVAVMVHATSFKIFFIFNAIALFTSLAVVVVQITLVRGETKTERRVVEVINKL----- 514

Query:   589 TLFFSIACLMVAFAATVHITQFHPWKWVIIPTALLG 624
              ++ +  C  VAF ++ +I      ++  +   ++G
Sbjct:   515 -MWLASVCTTVAFISSSYIVVGRRNRYAAVVVTVIG 549

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
 Identities = 52/160 (32%), Positives = 83/160 (51%)

Query:   494 GEKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDS----RGMPNFLEEPSF-TIFGISN 548
             G K+ KD+     +VATL+ T+ FAA I +PGG  S    RG+   L++  F +IF + N
Sbjct:   453 GNKY-KDSINVLLLVATLVATVAFAAGIAIPGGFSSSTPKRGIA-ILDDDDFLSIFLVFN 510

Query:   549 ALALFSSVISV--LIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVH 606
              LA+ SSV+++  LI+  +       + F ++LP  L + L+++  +  C +VA      
Sbjct:   511 TLAMQSSVLAIVALIWAQLGDPVLVHKTFHLALPA-LFVSLVSMSSAFFCGVVA------ 563

Query:   607 ITQFHPWKWVIIPTALLGFLPVFLFATLQFPLLIEVFAST 646
              T+ +PW +  I    + FL  F+ A L  P  I  F  T
Sbjct:   564 TTKHNPWLFDSIIFISIIFL--FVVAYLLAPYAIPQFPGT 601

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
 Identities = 55/202 (27%), Positives = 91/202 (45%)

Query:   438 VPSTE-VPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREV--FTKEHEKLVEEG 494
             VPS + +  +     REL+  + V +  H  + +QL     T + V    K+  K+  EG
Sbjct:   295 VPSAKTIKPSGPNPARELK--QTVSDIKHE-VHNQLEHTRLTRKRVQGIAKQLNKMHTEG 351

Query:   495 EKWMKDTAGSCSVVATLIMTIVFAAAITVPGG--SDSRGMP--------NFLEEPSFTIF 544
                + +   S +VVA LI T+ FAA  TVPG    D+  +P        N      F IF
Sbjct:   352 ---LNNAINSTTVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIF 408

Query:   545 GISNALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLM--VAFA 602
              I +++ALF S+  V++   ++         + S  +K ++ +I     +AC++  VAF 
Sbjct:   409 FIFDSIALFISLAVVVVQTSVVV--------IESKAKKQMMAVINKLMWLACVLISVAFL 460

Query:   603 ATVHITQFHPWKWVIIPTALLG 624
             A   +      KW+ I    +G
Sbjct:   461 ALSFVVVGEEEKWLAIWVTAIG 482

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 46/162 (28%), Positives = 83/162 (51%)

Query:   499 KDTAGSCSVVATLIMTIVFAAAITVPGGSDSR----GMPNFLEEPSFTIFGISNALALFS 554
             KD+  +  V ATL+ T+ FAA +T+PGG  S     GM   + + +F +F + N +A+ +
Sbjct:   446 KDSVNTLMVTATLVATVTFAAGLTLPGGYMSSAPHLGMAALVNKLNFKVFLLLNNIAMCT 505

Query:   555 SVISV--LIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHITQFHP 612
             SV++V  LI+  +  +  +++ F ++LP      L+T   S+  +M + A    +    P
Sbjct:   506 SVVTVMALIWAQLGDALLTKKAFRLALPL-----LLTAVVSM--MMASVAGLTLVVSDLP 558

Query:   613 W--KWVI-IPTALLGFLPVFL----FATLQFPLLIEVFASTY 647
             W    V+ I +A L FL + +    F++ +   L  +F   Y
Sbjct:   559 WLSHLVLAIDSAFLVFLMLLIIPYAFSSTRHGFLRHIFYFPY 600

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034911001 SubName- Full=Chromosome chr13 scaffold_74, whole genome shotgun sequence; (514 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	658
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-28

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  109 bits (275), Expect = 2e-28
 Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 495 EKWMKDTAGSCSVVATLIMTIVFAAAITVPGG------SDSRGMPNFLEEPS-FTIFGIS 547
            +W++ T  S  VVATLI T+ FAA  T PGG          G P    +P  F  F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 548 NALALFSSVISVLIFLGILTSRFSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHI 607
           N +A  +S+++V++ L I+        F   LPR L+  L  L+ S+  LMVAFAA  + 
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLPR-LLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 608 T 608
            
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	658
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.98
PHA03100	480	ankyrin repeat protein; Provisional	99.98
PHA02791	284	ankyrin-like protein; Provisional	99.98
PHA02917	661	ankyrin-like protein; Provisional	99.98
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PF13962	113	PGG: Domain of unknown function	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.9
PHA02795	437	ankyrin-like protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
PHA02741	169	hypothetical protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
PHA02743	166	Viral ankyrin protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.75
PHA02743	166	Viral ankyrin protein; Provisional	99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.74
PHA02741	169	hypothetical protein; Provisional	99.74
PHA02884	300	ankyrin repeat protein; Provisional	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
PHA02884	300	ankyrin repeat protein; Provisional	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.67
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.57
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.52
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.4
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.37
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.36
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.34
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.3
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.26
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.25
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.25
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.21
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.16
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.16
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.08
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.94
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.66
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.55
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.53
PF13606	30	Ank_3: Ankyrin repeat	98.5
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.46
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.45
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.36
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.34
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.34
KOG0522	560	consensus Ankyrin repeat protein [General function	98.31
PF13606	30	Ank_3: Ankyrin repeat	98.3
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.27
KOG0522	560	consensus Ankyrin repeat protein [General function	98.26
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.25
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.21
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.1
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.93
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.86
KOG2384	223	consensus Major histocompatibility complex protein	97.73
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.7
KOG2384	223	consensus Major histocompatibility complex protein	97.62
KOG0511	516	consensus Ankyrin repeat protein [General function	97.51
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.49
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.37
KOG0511	516	consensus Ankyrin repeat protein [General function	97.22
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.18
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.69
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.22
KOG2505	591	consensus Ankyrin repeat protein [General function	92.88
KOG2505	591	consensus Ankyrin repeat protein [General function	90.97
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.86
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	85.59
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.57
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.96
KOG4591	280	consensus Uncharacterized conserved protein, conta	80.64

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=340.22  Aligned_cols=288  Identities=14%  Similarity=0.118  Sum_probs=239.1

Q ss_pred             hhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCC
Q 006173           28 IIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEG  107 (658)
Q Consensus        28 ~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G  107 (658)
                      ..+|..+.+|||.|+....++.++.++  +.+.+..-. +.++.+||| .|+..|..+..+.|++++ . +++.. |++|
T Consensus        82 ~a~D~~~n~~l~~a~~~~~~~~i~~Ll--s~gad~~~~-n~~~~aplh-~A~~~~~~s~L~~Ll~~~-~-dvnl~-de~~  154 (929)
T KOG0510|consen   82 YAKDSADNTPLHAAVEYNQGDKIQVLL--SYGADTPLR-NLNKNAPLH-LAADSGNYSCLKLLLDYG-A-DVNLE-DENG  154 (929)
T ss_pred             hhhhcccCchhHHHhhcchHHHHHHHH--hcCCCCChh-hhhccCchh-hccccchHHHHHHHHHhc-C-Ccccc-ccCC
Confidence            456667889999999999999999999  555545433 889999999 999999999999999995 4 48899 9999


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC------CCCC
Q 006173          108 SEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR------EPLD  181 (658)
Q Consensus       108 ~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~------~~~~  181 (658)
                      .||||+||..++.|..+.|++.+++. ...+.           + |.+|+|.|++.|..|+.+..+.+..      .+..
T Consensus       155 ~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~-----------~-~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~  221 (929)
T KOG0510|consen  155 FTPLHLAARKNKVEAKKELINKGADP-CKSDI-----------D-GNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD  221 (929)
T ss_pred             CchhhHHHhcChHHHHHHHHhcCCCC-CcccC-----------c-CCchHHHHHHhcchhhhhhhhccccchhhcccccc
Confidence            99999999999999989999999996 45555           5 9999999999999999999998322      3678


Q ss_pred             CCcchhHHHHHHhcCcHHHHHHHHHhCCCc--------------cccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhc
Q 006173          182 GRQGFVLLKFLIDSNLFDMALALLKCHPMI--------------ARADIGETGKILESLSKRPKAFASGSRLGSWKRLLY  247 (658)
Q Consensus       182 ~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~--------------~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~  247 (658)
                      ++.|.||||.|+..|+.+.++..|+.....              ++..|.+|.||||+||+.|+.       +.+     
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~-------~sv-----  289 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGP-------ESV-----  289 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCCh-------hHH-----
Confidence            899999999999999999999999876533              345688999999999999743       111     


Q ss_pred             ccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhh
Q 006173          248 QWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIH  327 (658)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  327 (658)
                                                                                                      
T Consensus       290 --------------------------------------------------------------------------------  289 (929)
T KOG0510|consen  290 --------------------------------------------------------------------------------  289 (929)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHh-hcCCCcccccccCCChHHHHHHHhCCHhHH
Q 006173          328 EQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMN-SYFPWSLEFKNKDGYDIFKVAVEHRREKVF  406 (658)
Q Consensus       328 ~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~-~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  406 (658)
                             +.++    ....+.+.++.++.||||.||++|+.+.|+.||+ .+ .-..+..|-.|+||||+|+++||..++
T Consensus       290 -------d~Ll----~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~-~rllne~D~~g~tpLHlaa~~gH~~v~  357 (929)
T KOG0510|consen  290 -------DNLL----GFGASINSKNKDEESPLHFAAIYGRINTVERLLQESD-TRLLNESDLHGMTPLHLAAKSGHDRVV  357 (929)
T ss_pred             -------HHHH----HcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcC-ccccccccccCCCchhhhhhcCHHHHH
Confidence                   1111    2223344467889999999999999999999999 55 556777788999999999999999999


Q ss_pred             HHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          407 NIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       407 ~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ++|++.|+.... ....|++|+||||+||+.|++
T Consensus       358 qlLl~~GA~~~~-~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  358 QLLLNKGALFLN-MSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             HHHHhcChhhhc-ccccccCCchhhhHHHHhccH
Confidence            999999984321 115699999999999999986

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-38  Score=360.67  Aligned_cols=344  Identities=11%  Similarity=0.067  Sum_probs=250.8

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhh-------------------------------
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGI-------------------------------   79 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa-------------------------------   79 (658)
                      +...+||||.|+..|+.+.|+.++ +.+|...... |..|.|||| .|+                               
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll-~~~~~~~~~~-~~~~~tpLh-~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  114 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEII-QQNPELIYIT-DHKCHSTLH-TICIIPNVMDIVISLTLDCDIILDIKYASIILNK  114 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHH-HhCcccchhh-chhhccccc-cccCCCCccccccccccchhhcccccHHHHHHHH
Confidence            445799999999999999999999 8888855444 888999999 887                               


Q ss_pred             ---------------------------------------cCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCH
Q 006173           80 ---------------------------------------PDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKL  120 (658)
Q Consensus        80 ---------------------------------------~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~  120 (658)
                                                             ..|+.+++++|++.| .+ ++.+ |..|+||||+||..|+.
T Consensus       115 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~G-ad-vn~~-d~~G~TpLh~Aa~~G~~  191 (682)
T PHA02876        115 HKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGG-AD-VNAK-DIYCITPIHYAAERGNA  191 (682)
T ss_pred             HHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCC-CC-CCCC-CCCCCCHHHHHHHCCCH
Confidence                                                   456788999999984 34 8888 99999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC----------------------
Q 006173          121 NLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE----------------------  178 (658)
Q Consensus       121 ~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~----------------------  178 (658)
                      ++|++|+++|+++ +..+.           . |.||||+|+..|+.+++++|++.+++                      
T Consensus       192 ~iv~~LL~~Gad~-n~~~~-----------~-g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~  258 (682)
T PHA02876        192 KMVNLLLSYGADV-NIIAL-----------D-DLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLL  258 (682)
T ss_pred             HHHHHHHHCCCCc-CccCC-----------C-CCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHH
Confidence            9999999999886 44444           5 99999999999999998888776542                      


Q ss_pred             --------CCCCCcchhHHHHHHhcCcH-HHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhccc
Q 006173          179 --------PLDGRQGFVLLKFLIDSNLF-DMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQW  249 (658)
Q Consensus       179 --------~~~~~~g~t~Lh~A~~~g~~-~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~  249 (658)
                              +..+..|.||||+|+..++. ++++.|++.+ ...+.+|.+|.||||+|+..+..      ...++.++...
T Consensus       259 Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g-adin~~d~~g~TpLh~Aa~~g~~------~~~v~~Ll~~g  331 (682)
T PHA02876        259 LYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLMAKNGYD------TENIRTLIMLG  331 (682)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCC------HHHHHHHHHcC
Confidence                    24566788888888888876 4677777764 44577788888888888887521      22333333222


Q ss_pred             ccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHH-HhhhhhH
Q 006173          250 IPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIR-DAKIIHE  328 (658)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~  328 (658)
                      ..++..+..                                                         +...+. .....+ 
T Consensus       332 adin~~d~~---------------------------------------------------------g~TpLh~A~~~~~-  353 (682)
T PHA02876        332 ADVNAADRL---------------------------------------------------------YITPLHQASTLDR-  353 (682)
T ss_pred             CCCCCcccC---------------------------------------------------------CCcHHHHHHHhCC-
Confidence            211100000                                                         000000 000000 


Q ss_pred             HHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCC-HhHHH
Q 006173          329 QTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRR-EKVFN  407 (658)
Q Consensus       329 ~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~-~~iv~  407 (658)
                       ...++..+.    ....+.+.+|..|+||||+|+..|+.++++.|++.+ ++ ++..+..|.||||+|+..++ ..+++
T Consensus       354 -~~~iv~lLl----~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g-ad-~~~~~~~g~T~Lh~A~~~~~~~~~vk  426 (682)
T PHA02876        354 -NKDIVITLL----ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG-AD-IEALSQKIGTALHFALCGTNPYMSVK  426 (682)
T ss_pred             -cHHHHHHHH----HcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC-ccccCCCCCchHHHHHHcCCHHHHHH
Confidence             012222222    333455668889999999999999999999999999 66 45678999999999998665 56799


Q ss_pred             HHhcCCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhc-CcchhhhccCCCCCchhhhHH
Q 006173          408 IIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCV-HPTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       408 ~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      +|++.|+    ++|.+|.+|+||||+|++.+...                +.++.++ .....+.+|..|.||+.++.+
T Consensus       427 ~Ll~~ga----din~~d~~G~TpLh~Aa~~~~~~----------------~iv~lLl~~Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        427 TLIDRGA----NVNSKNKDLSTPLHYACKKNCKL----------------DVIEMLLDNGADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             HHHhCCC----CCCcCCCCCChHHHHHHHhCCcH----------------HHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9999998    78999999999999999877421                0111111 122377899999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-37  Score=333.84  Aligned_cols=284  Identities=16%  Similarity=0.188  Sum_probs=235.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      ..|+.|+..||++.++.++ +..+..++.. +.+|.|||| .|+..|+.++|++|++.| .+ ++.. +..|.||||+|+
T Consensus         3 ~~l~~ai~~gd~~~v~~ll-~~~~~~~n~~-~~~~~tpL~-~A~~~g~~~iv~~Ll~~G-a~-~n~~-~~~~~t~L~~A~   76 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKII-KNKGNCINIS-VDETTTPLI-DAIRSGDAKIVELFIKHG-AD-INHI-NTKIPHPLLTAI   76 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHH-HcCCCCCCCc-CCCCCCHHH-HHHHcCCHHHHHHHHHCC-CC-CCCC-CCCCCCHHHHHH
Confidence            3589999999999999999 6666655544 678999999 999999999999999995 33 6777 899999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCccc------------ccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          116 STGKLNLITTLMGYNEELPNIK------------VEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~------------~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      ..|+.+++++|++.|++.....            -..+.|++.++. . |.||||+|+..|+.++|++|++++++ +.+|
T Consensus        77 ~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~-~-g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d  154 (434)
T PHA02874         77 KIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA-E-LKTFLHYAIKKGDLESIKMLFEYGADVNIED  154 (434)
T ss_pred             HcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCC-C-CccHHHHHHHCCCHHHHHHHHhCCCCCCCcC
Confidence            9999999999999987642211            123677888877 7 99999999999999999999999985 6789


Q ss_pred             CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCC
Q 006173          183 RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHP  262 (658)
Q Consensus       183 ~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~  262 (658)
                      ..|.||||+|+..|+.++++.|++.+.+ .+.+|..|.||||+|++.++.                              
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~------------------------------  203 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDY------------------------------  203 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCH------------------------------
Confidence            9999999999999999999999998654 467889999999999998532                              


Q ss_pred             CCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhh
Q 006173          263 PSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAV  342 (658)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  342 (658)
                                                                                           ++++.+++.. 
T Consensus       204 ---------------------------------------------------------------------~iv~~Ll~~g-  213 (434)
T PHA02874        204 ---------------------------------------------------------------------ACIKLLIDHG-  213 (434)
T ss_pred             ---------------------------------------------------------------------HHHHHHHhCC-
Confidence                                                                                 1222222222 


Q ss_pred             hhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhC-CHhHHHHHhcCCCccccccc
Q 006173          343 DILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHR-REKVFNIIFNFPNIYPFFMA  421 (658)
Q Consensus       343 ~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~~~~~~~~~in  421 (658)
                         .+...++..|.||||.|+..++ +.++.|+. + .+ ++.+|.+|+||||+|+..+ +.+++++|++.|+    +++
T Consensus       214 ---~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~-~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ga----d~n  282 (434)
T PHA02874        214 ---NHIMNKCKNGFTPLHNAIIHNR-SAIELLIN-N-AS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHKA----DIS  282 (434)
T ss_pred             ---CCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc-C-CC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcC----CCC
Confidence               2233466789999999999876 56677663 4 33 5678999999999999876 7899999999998    789


Q ss_pred             ccccCCCchhhhHhhcCC
Q 006173          422 NIDEKRINILHIAAMSVP  439 (658)
Q Consensus       422 ~~D~~G~TpLHlAa~~g~  439 (658)
                      .+|.+|+||||+|++.++
T Consensus       283 ~~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        283 IKDNKGENPIDTAFKYIN  300 (434)
T ss_pred             CCCCCCCCHHHHHHHhCC
Confidence            999999999999999875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.2e-37  Score=327.85  Aligned_cols=176  Identities=13%  Similarity=0.073  Sum_probs=137.7

Q ss_pred             hhHHHHHHHH--hCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           34 SYKQVTRYIL--ENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        34 ~~~~L~~A~~--~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      .+++||.++.  .++.+.++.|+  ..+..++.+ |.+|+|||| +||..|+.++|+.|+++| .+ ++.+ |..|.|||
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll--~~Gadvn~~-d~~G~TpLh-~Aa~~g~~eiv~lLL~~G-Ad-in~~-d~~g~TpL  109 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELL--HRGYSPNET-DDDGNYPLH-IASKINNNRIVAMLLTHG-AD-PNAC-DKQHKTPL  109 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHH--HCcCCCCcc-CCCCCCHHH-HHHHcCCHHHHHHHHHCc-CC-CCCC-CCCCCCHH
Confidence            3577887653  44667888888  445556655 788999999 999999999999999884 33 7778 89999999


Q ss_pred             HHHHhcC--CHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhH
Q 006173          112 EYAVSTG--KLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVL  188 (658)
Q Consensus       112 h~Aa~~G--~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~  188 (658)
                      |+|+..+  +.+++++|+++|+++....+.           . |.|||| ||..|+.+++++|++.+++ ..+|..|.||
T Consensus       110 h~A~~~~~~~~e~v~lLl~~Gadin~~~d~-----------~-g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~  176 (446)
T PHA02946        110 YYLSGTDDEVIERINLLVQYGAKINNSVDE-----------E-GCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNH  176 (446)
T ss_pred             HHHHHcCCchHHHHHHHHHcCCCcccccCC-----------C-CCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCH
Confidence            9988765  478899999988887554555           5 889997 6667888999999988885 6788889999


Q ss_pred             HHHHHhcCc--HHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          189 LKFLIDSNL--FDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       189 Lh~A~~~g~--~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      ||+|+..++  .++++.|++.+. .++.+|.+|.||||+|++.+
T Consensus       177 Lh~A~~~~~~~~~~v~~Ll~~Ga-din~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        177 IHRHLMSDNPKASTISWMMKLGI-SPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHHcC
Confidence            998876554  588888888754 44778888999999998774

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.8e-37  Score=329.47  Aligned_cols=296  Identities=11%  Similarity=-0.010  Sum_probs=226.3

Q ss_pred             hhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCC--hHHHHHHHhcCCccccc-ccc
Q 006173           27 KIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVP--ATLVDKLLSKVPRNCLQ-NFA  103 (658)
Q Consensus        27 ~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~--~~iv~~Ll~~~~~~~l~-~~~  103 (658)
                      .+..+.++.||||.|+..|+.+.++.|+  .++..++.+ |.+|.|||| +|+..++  .+++++|++++ .+ ++ .. 
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL--~~GAdin~~-d~~g~TpLh-~A~~~~~~~~e~v~lLl~~G-ad-in~~~-  137 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLL--THGADPNAC-DKQHKTPLY-YLSGTDDEVIERINLLVQYG-AK-INNSV-  137 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHH--HCcCCCCCC-CCCCCCHHH-HHHHcCCchHHHHHHHHHcC-CC-ccccc-
Confidence            3455677999999999999999999999  455666655 889999999 9887664  89999999995 34 55 45 


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCc--HHHHHHhccCCCC-CC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGK--RDAVRHLLPKTRE-PL  180 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~--~~iv~~Ll~~~~~-~~  180 (658)
                      |.+|.|||| ||..|+.+++++|++.++++ +..+.           . |+||||+|+..++  .+++++|+++|++ +.
T Consensus       138 d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~-----------~-G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        138 DEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDK-----------F-GKNHIHRHLMSDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             CCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCC-----------C-CCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence            889999998 77789999999999998875 45555           6 9999999988655  6899999999996 67


Q ss_pred             CCCcchhHHHHHHhcC--cHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCC
Q 006173          181 DGRQGFVLLKFLIDSN--LFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNP  258 (658)
Q Consensus       181 ~~~~g~t~Lh~A~~~g--~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~  258 (658)
                      +|.+|.||||+|+..+  +.++++.|+.  +...+.+|.+|.||||+|++.++.      ...++.++..+...      
T Consensus       204 ~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~------~~~~~~Ll~~g~~~------  269 (446)
T PHA02946        204 PDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSP------AHLINKLLSTSNVI------  269 (446)
T ss_pred             cCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCCh------HHHHHHHHhCCCCC------
Confidence            8999999999999886  7899998885  456788999999999999998531      12222222221100      


Q ss_pred             CCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHH
Q 006173          259 HPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMC  338 (658)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  338 (658)
                                                          .+...        .            ........   +.++.+.
T Consensus       270 ------------------------------------~~~~~--------~------------~a~~~~~~---~~~e~l~  290 (446)
T PHA02946        270 ------------------------------------TDQTV--------N------------ICIFYDRD---DVLEIIN  290 (446)
T ss_pred             ------------------------------------CCcHH--------H------------HHHHcCch---HHHHHHH
Confidence                                                00000        0            00000000   1111111


Q ss_pred             HhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccc
Q 006173          339 AGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPF  418 (658)
Q Consensus       339 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~  418 (658)
                      ...          +..|+||||+|+..|+.+++++|++++ +        +|+||||+|+.+++.+++++|+..|+    
T Consensus       291 ~~g----------~~~~~TpLh~Aa~~g~~eivk~Ll~~~-~--------~~~t~L~~A~~~~~~~~v~~Ll~~ga----  347 (446)
T PHA02946        291 DKG----------KQYDSTDFKMAVEVGSIRCVKYLLDND-I--------ICEDAMYYAVLSEYETMVDYLLFNHF----  347 (446)
T ss_pred             HcC----------cccCCCHHHHHHHcCCHHHHHHHHHCC-C--------ccccHHHHHHHhCHHHHHHHHHHCCC----
Confidence            111          134789999999999999999999987 4        57999999999999999999999998    


Q ss_pred             cccccccCCCchhhhHhhcCCC
Q 006173          419 FMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       419 ~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ++|.+ .+|+||||+|++.++.
T Consensus       348 ~~n~~-~~G~t~l~~a~~~~~~  368 (446)
T PHA02946        348 SVDSV-VNGHTCMSECVRLNNP  368 (446)
T ss_pred             CCCCc-cccccHHHHHHHcCCH
Confidence            67875 6899999999999985

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=309.56  Aligned_cols=277  Identities=12%  Similarity=0.104  Sum_probs=231.5

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCCh
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSE  109 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~T  109 (658)
                      .+..+..|||.|+..|+.+.++.++  +.+.+++.. |+.|.|||| .||..++.|..+.|++.+ .+ .... |.+|++
T Consensus       117 ~n~~~~aplh~A~~~~~~s~L~~Ll--~~~~dvnl~-de~~~TpLh-~A~~~~~~E~~k~Li~~~-a~-~~K~-~~~~~~  189 (929)
T KOG0510|consen  117 RNLNKNAPLHLAADSGNYSCLKLLL--DYGADVNLE-DENGFTPLH-LAARKNKVEAKKELINKG-AD-PCKS-DIDGNF  189 (929)
T ss_pred             hhhhccCchhhccccchHHHHHHHH--HhcCCcccc-ccCCCchhh-HHHhcChHHHHHHHHhcC-CC-CCcc-cCcCCc
Confidence            3456889999999999999999999  444556555 889999999 999999999889999984 33 5556 999999


Q ss_pred             HHHHHHhcCCHHHHHHHHh-----cCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC------
Q 006173          110 YMEYAVSTGKLNLITTLMG-----YNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE------  178 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~-----~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~------  178 (658)
                      |+|.|+++|..|+.+..+.     ++..+ +..+.           . |.||||.|+..|+.++++.+++.++.      
T Consensus       190 ~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n-----------~-~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~  256 (929)
T KOG0510|consen  190 PIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNN-----------E-KATPLHLAVEGGDIEMLKMCLQNGKKIADVQL  256 (929)
T ss_pred             hHHHHHHhcchhhhhhhhccccchhhccc-ccccC-----------C-CCcchhhhhhcCCHHHHHHHHhCccccchhhh
Confidence            9999999999999999998     34444 33333           5 99999999999999999999999871      


Q ss_pred             ----------CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcc
Q 006173          179 ----------PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQ  248 (658)
Q Consensus       179 ----------~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~  248 (658)
                                +..|++|+||||+|++.|+.+.+..|+..+.+ .+.++.++.||||.||.+|+.       .-+++++  
T Consensus       257 ~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~-------ntv~rLL--  326 (929)
T KOG0510|consen  257 DAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRI-------NTVERLL--  326 (929)
T ss_pred             HHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccH-------HHHHHHH--
Confidence                      26899999999999999999999999998555 488899999999999999632       1122221  


Q ss_pred             cccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhH
Q 006173          249 WIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHE  328 (658)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  328 (658)
                                                                                                      
T Consensus       327 --------------------------------------------------------------------------------  326 (929)
T KOG0510|consen  327 --------------------------------------------------------------------------------  326 (929)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccc--ccccCCChHHHHHHHhCCHhHH
Q 006173          329 QTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLE--FKNKDGYDIFKVAVEHRREKVF  406 (658)
Q Consensus       329 ~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~--~~d~~G~T~Lh~A~~~~~~~iv  406 (658)
                                + . ......+..|-.|.||||+|+++||..+++.||+++ +...+  .+|++|.||||.|++.|+..+|
T Consensus       327 ----------~-~-~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G-A~~~~~~e~D~dg~TaLH~Aa~~g~~~av  393 (929)
T KOG0510|consen  327 ----------Q-E-SDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG-ALFLNMSEADSDGNTALHLAAKYGNTSAV  393 (929)
T ss_pred             ----------h-C-cCccccccccccCCCchhhhhhcCHHHHHHHHHhcC-hhhhcccccccCCchhhhHHHHhccHHHH
Confidence                      1 0 111122235667999999999999999999999999 87665  5599999999999999999999


Q ss_pred             HHHhcCCCcccccccccccCCCchhhh
Q 006173          407 NIIFNFPNIYPFFMANIDEKRINILHI  433 (658)
Q Consensus       407 ~~Ll~~~~~~~~~in~~D~~G~TpLHl  433 (658)
                      ++|+.+|+    ++..+|+.|.|++|+
T Consensus       394 ~~Li~~Ga----~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  394 QKLISHGA----DIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHcCC----ceeeccccccccccc
Confidence            99999999    888999999999996

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=325.25  Aligned_cols=275  Identities=11%  Similarity=0.065  Sum_probs=231.4

Q ss_pred             HHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCC---ChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           39 TRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDV---PATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        39 ~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g---~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      +.++..++.+.++.|+  +++..++.+ +..|.|||| .|+..|   +.++++.|++.| .+ ++.. |..|.||||+|+
T Consensus        19 ~~~~~~~~~~~v~~Ll--~~ga~vn~~-~~~g~t~Lh-~a~~~~~~~~~~iv~~Ll~~G-ad-in~~-~~~g~TpLh~A~   91 (471)
T PHA03095         19 LLNASNVTVEEVRRLL--AAGADVNFR-GEYGKTPLH-LYLHYSSEKVKDIVRLLLEAG-AD-VNAP-ERCGFTPLHLYL   91 (471)
T ss_pred             HHcCCCCCHHHHHHHH--HcCCCcccC-CCCCCCHHH-HHHHhcCCChHHHHHHHHHCC-CC-CCCC-CCCCCCHHHHHH
Confidence            6789999999999999  455666655 889999999 999998   999999999994 34 8888 999999999999


Q ss_pred             hcC-CHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHH--HhCcHHHHHHhccCCCC-CCCCCcchhHHHH
Q 006173          116 STG-KLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAA--KAGKRDAVRHLLPKTRE-PLDGRQGFVLLKF  191 (658)
Q Consensus       116 ~~G-~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa--~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~  191 (658)
                      ..| +.+++++|++.|+++ +..+.           . |.||||+|+  ..++.+++++|+++|++ ...|..|.||||+
T Consensus        92 ~~~~~~~iv~lLl~~ga~i-n~~~~-----------~-g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~  158 (471)
T PHA03095         92 YNATTLDVIKLLIKAGADV-NAKDK-----------V-GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV  158 (471)
T ss_pred             HcCCcHHHHHHHHHcCCCC-CCCCC-----------C-CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            999 599999999999986 55555           6 999999999  56689999999999995 6789999999999


Q ss_pred             HHhcC--cHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCC
Q 006173          192 LIDSN--LFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGG  269 (658)
Q Consensus       192 A~~~g--~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  269 (658)
                      |+..+  +.++++.|++.+.+.... |..|.||||+++.....                                     
T Consensus       159 a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~-------------------------------------  200 (471)
T PHA03095        159 LLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKP-------------------------------------  200 (471)
T ss_pred             HHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCC-------------------------------------
Confidence            98876  689999999997766444 89999999999876311                                     


Q ss_pred             chhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchh
Q 006173          270 DLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHE  349 (658)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  349 (658)
                                                                                  ...+++.+.    ....+.+
T Consensus       201 ------------------------------------------------------------~~~i~~~Ll----~~g~~~~  216 (471)
T PHA03095        201 ------------------------------------------------------------RARIVRELI----RAGCDPA  216 (471)
T ss_pred             ------------------------------------------------------------cHHHHHHHH----HcCCCCc
Confidence                                                                        001122222    2234455


Q ss_pred             hhhcCCCcHHHHHHHhCcH--HHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCC
Q 006173          350 EAQNVFKKPMFKAARLGIY--EIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKR  427 (658)
Q Consensus       350 ~~~~~g~tpLh~Aa~~G~~--~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G  427 (658)
                      .+|..|+||||+|+..|+.  .+++.|++.+ .+ ++.+|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|
T Consensus       217 ~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g-~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga----d~n~~~~~g  290 (471)
T PHA03095        217 ATDMLGNTPLHSMATGSSCKRSLVLPLLIAG-IS-INARNRYGQTPLHYAAVFNNPRACRRLIALGA----DINAVSSDG  290 (471)
T ss_pred             ccCCCCCCHHHHHHhcCCchHHHHHHHHHcC-CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCC
Confidence            6788999999999999975  5788889888 55 67789999999999999999999999999998    789999999


Q ss_pred             CchhhhHhhcCCCC
Q 006173          428 INILHIAAMSVPST  441 (658)
Q Consensus       428 ~TpLHlAa~~g~~~  441 (658)
                      +||||+|+..|+.+
T Consensus       291 ~tpl~~A~~~~~~~  304 (471)
T PHA03095        291 NTPLSLMVRNNNGR  304 (471)
T ss_pred             CCHHHHHHHhCCHH
Confidence            99999999999863

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7e-35  Score=320.52  Aligned_cols=168  Identities=11%  Similarity=0.036  Sum_probs=138.4

Q ss_pred             HhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhc--CCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCC-
Q 006173           43 LENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIP--DVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGK-  119 (658)
Q Consensus        43 ~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~--~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~-  119 (658)
                      +.++.+.++.|+ +.....++.+.+..|.|||| .|+.  .++.++|++|++.| .+ ++.+ |.+|.||||+|+..|+ 
T Consensus       151 ~~v~leiVk~LL-e~G~ADIN~~~d~~G~TpLH-~A~~n~~~~~eIVklLLe~G-AD-VN~k-D~~G~TPLH~Aa~~g~~  225 (764)
T PHA02716        151 RGIDLDLIKYMV-DVGIVNLNYVCKKTGYGILH-AYLGNMYVDIDILEWLCNNG-VN-VNLQ-NNHLITPLHTYLITGNV  225 (764)
T ss_pred             cCCCHHHHHHHH-HCCCCCcccccCCCCCcHHH-HHHHhccCCHHHHHHHHHcC-CC-CCCC-CCCCCCHHHHHHHcCCC
Confidence            568999999999 54324566555788999999 8864  46789999999994 34 8888 9999999999999995 


Q ss_pred             -HHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHH-------------------------------------H
Q 006173          120 -LNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMA-------------------------------------A  161 (658)
Q Consensus       120 -~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~A-------------------------------------a  161 (658)
                       .++|++|++.|+++ +.++.           . |+||||+|                                     +
T Consensus       226 ~~eIVklLLe~GADV-N~kD~-----------~-G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA  292 (764)
T PHA02716        226 CASVIKKIIELGGDM-DMKCV-----------N-GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLA  292 (764)
T ss_pred             CHHHHHHHHHcCCCC-CCCCC-----------C-CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence             59999999999986 55555           6 99999975                                     4


Q ss_pred             HhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHh--cCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcC
Q 006173          162 KAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLID--SNLFDMALALLKCHPMIARADIGETGKILESLSKR  229 (658)
Q Consensus       162 ~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~--~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~  229 (658)
                      ..|+.+++++|+++|++ +.+|..|+||||+|+.  .++.+++++|++.+. ..+.+|..|.||||+|+..
T Consensus       293 ~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA-DIN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        293 RNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN-DLNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             HcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC-CCccCCCCCCCHHHHHHHh
Confidence            45788999999999985 6789999999998764  457899999998854 4578899999999998764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=327.88  Aligned_cols=313  Identities=15%  Similarity=0.037  Sum_probs=230.3

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      .....++|+.|+..|+.+.++.|+  ..+..++.+ |..|+|||| .||..|+.++|++|+++| .+ ++.. +.+|.||
T Consensus       142 ~~~~~~~l~~~i~~~~~~i~k~Ll--~~Gadvn~~-d~~G~TpLh-~Aa~~G~~~iv~~LL~~G-ad-~n~~-~~~g~t~  214 (682)
T PHA02876        142 SIEYMKLIKERIQQDELLIAEMLL--EGGADVNAK-DIYCITPIH-YAAERGNAKMVNLLLSYG-AD-VNII-ALDDLSV  214 (682)
T ss_pred             chhhhHHHHHHHHCCcHHHHHHHH--hCCCCCCCC-CCCCCCHHH-HHHHCCCHHHHHHHHHCC-CC-cCcc-CCCCCCH
Confidence            344567888999999999999988  445556655 788999999 999999999999999984 33 6777 8889999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCC----------------------------CcccccCCCCCCCcccCCCCCcHHHHHHH
Q 006173          111 MEYAVSTGKLNLITTLMGYNEEL----------------------------PNIKVEKKDDPNIKDEEKDDLLPVHMAAK  162 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l----------------------------~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~  162 (658)
                      ||+|+..|+.++++.|++.++++                            .+..+.           . |.||||+|+.
T Consensus       215 L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~-----------~-g~TpLh~Aa~  282 (682)
T PHA02876        215 LECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD-----------C-KNTPLHHASQ  282 (682)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----------C-CCCHHHHHHh
Confidence            99999999988888877665432                            123333           5 9999999999


Q ss_pred             hCcH-HHHHHhccCCCC-CCCCCcchhHHHHHHhcC-cHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCc
Q 006173          163 AGKR-DAVRHLLPKTRE-PLDGRQGFVLLKFLIDSN-LFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRL  239 (658)
Q Consensus       163 ~g~~-~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g-~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l  239 (658)
                      .|+. +++++|++.+++ +..|..|.||||+|+..| ..++++.|+..+. ..+.+|..|.||||+|+..+..      .
T Consensus       283 ~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~ga-din~~d~~g~TpLh~A~~~~~~------~  355 (682)
T PHA02876        283 APSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA-DVNAADRLYITPLHQASTLDRN------K  355 (682)
T ss_pred             CCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCC-CCCCcccCCCcHHHHHHHhCCc------H
Confidence            9885 689999999885 678889999999999988 5888888888754 4577888999999999876421      2


Q ss_pred             chhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHH
Q 006173          240 GSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKS  319 (658)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  319 (658)
                      ...+.++.....++..+..          |                                               ...
T Consensus       356 ~iv~lLl~~gadin~~d~~----------G-----------------------------------------------~Tp  378 (682)
T PHA02876        356 DIVITLLELGANVNARDYC----------D-----------------------------------------------KTP  378 (682)
T ss_pred             HHHHHHHHcCCCCccCCCC----------C-----------------------------------------------CCH
Confidence            2233333222211110000          0                                               000


Q ss_pred             H-HHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCc-HHHHHHHHhhcCCCcccccccCCChHHHHH
Q 006173          320 I-RDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGI-YEIVMGIMNSYFPWSLEFKNKDGYDIFKVA  397 (658)
Q Consensus       320 ~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~-~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A  397 (658)
                      + ......+   .++++.+++.    ..+.+..+..|.||||+|+..++ .++++.|++++ .+ ++.+|..|+||||+|
T Consensus       379 Lh~Aa~~~~---~~iv~~Ll~~----gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-ad-in~~d~~G~TpLh~A  449 (682)
T PHA02876        379 IHYAAVRNN---VVIINTLLDY----GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG-AN-VNSKNKDLSTPLHYA  449 (682)
T ss_pred             HHHHHHcCC---HHHHHHHHHC----CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC-CC-CCcCCCCCChHHHHH
Confidence            0 0111111   2344444443    34445567789999999998766 56789999988 55 677899999999999


Q ss_pred             HHhC-CHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          398 VEHR-REKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       398 ~~~~-~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                      +..+ +.+++++|++.|+    ++|.+|..|+||||+|+..+.
T Consensus       450 a~~~~~~~iv~lLl~~Ga----d~n~~d~~g~tpl~~a~~~~~  488 (682)
T PHA02876        450 CKKNCKLDVIEMLLDNGA----DVNAINIQNQYPLLIALEYHG  488 (682)
T ss_pred             HHhCCcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHhCC
Confidence            9977 6899999999998    789999999999999997653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=305.44  Aligned_cols=278  Identities=15%  Similarity=0.145  Sum_probs=225.9

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCc---------------
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPR---------------   96 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~---------------   96 (658)
                      .++.+|||.|+..|+.+.++.|+  +.+..++.. +..|.|||| .|+..|+.++|++|++.+..               
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll--~~Ga~~n~~-~~~~~t~L~-~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~  108 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFI--KHGADINHI-NTKIPHPLL-TAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIK  108 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH--HCCCCCCCC-CCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHH
Confidence            45779999999999999999999  444545544 778999999 99999999999999988531               


Q ss_pred             ------cccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 006173           97 ------NCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVR  170 (658)
Q Consensus        97 ------~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~  170 (658)
                            .+++.. |..|.||||+|+..|+.++|++|++.++++ +.++.           . |.||||+|+..|+.++++
T Consensus       109 ~ll~~g~d~n~~-~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~-----------~-g~tpLh~A~~~~~~~iv~  174 (434)
T PHA02874        109 TILDCGIDVNIK-DAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDD-----------N-GCYPIHIAIKHNFFDIIK  174 (434)
T ss_pred             HHHHCcCCCCCC-CCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCC-----------C-CCCHHHHHHHCCcHHHHH
Confidence                  135667 889999999999999999999999999886 44555           6 999999999999999999


Q ss_pred             HhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhccc
Q 006173          171 HLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQW  249 (658)
Q Consensus       171 ~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~  249 (658)
                      +|++++++ +..+..|.||||+|+..|+.+++++|++.+++. ..++.+|.||||.|+..+..                 
T Consensus       175 ~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~~-----------------  236 (434)
T PHA02874        175 LLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNRS-----------------  236 (434)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCChH-----------------
Confidence            99999985 678999999999999999999999999986654 67788999999999987311                 


Q ss_pred             ccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHH
Q 006173          250 IPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQ  329 (658)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  329 (658)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (434)
T PHA02874        237 --------------------------------------------------------------------------------  236 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhC-cHHHHHHHHhhcCCCcccccccCCChHHHHHHHhC-CHhHHH
Q 006173          330 TLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLG-IYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHR-REKVFN  407 (658)
Q Consensus       330 ~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G-~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~-~~~iv~  407 (658)
                         .+..+.     ...+.+.+|..|+||||+|+..+ +.++++.|++++ ++ ++.+|..|+||||+|++.+ +.++++
T Consensus       237 ---~i~~Ll-----~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g-ad-~n~~d~~g~TpL~~A~~~~~~~~~ik  306 (434)
T PHA02874        237 ---AIELLI-----NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHK-AD-ISIKDNKGENPIDTAFKYINKDPVIK  306 (434)
T ss_pred             ---HHHHHH-----cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCc-CC-CCCCCCCCCCHHHHHHHhCCccHHHH
Confidence               000011     11222346788999999999976 789999999999 66 5778999999999999987 778999


Q ss_pred             HHhcCCCcccccccccccCC-CchhhhHhhcCC
Q 006173          408 IIFNFPNIYPFFMANIDEKR-INILHIAAMSVP  439 (658)
Q Consensus       408 ~Ll~~~~~~~~~in~~D~~G-~TpLHlAa~~g~  439 (658)
                      .|+..+.    .++..+..+ .+++..+....+
T Consensus       307 ~ll~~~~----~~~~~~~~~~~~~~~~~~i~~~  335 (434)
T PHA02874        307 DIIANAV----LIKEADKLKDSDFLEHIEIKDN  335 (434)
T ss_pred             HHHHhcC----chhhccccchhHHHHHHHHhcc
Confidence            9999876    444555544 455666554443

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=300.05  Aligned_cols=404  Identities=11%  Similarity=0.025  Sum_probs=256.2

Q ss_pred             hhhhhhhHHHHHHHHhC---CHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCC--ChHHHHHHHhcCCcccccccc
Q 006173           29 IKDIDSYKQVTRYILEN---DWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDV--PATLVDKLLSKVPRNCLQNFA  103 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G---~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g--~~~iv~~Ll~~~~~~~l~~~~  103 (658)
                      ..+.++.||||.|+..|   +.+.++.||  .++..++.+ |.+|+|||| +|+..|  +.|+|++|++.+.....+.. 
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLL--s~GAdin~k-D~~G~TPLh-~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~-  110 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLL--SRGVERLCR-NNEGLTPLG-VYSKRKYVKSQIVHLLISSYSNASNELT-  110 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHH--hCCCCCccc-CCCCCChHH-HHHHcCCCcHHHHHHHHhcCCCCCcccc-
Confidence            34556889999999997   599999999  667777766 899999999 999866  79999999999644445666 


Q ss_pred             CCCCChHHHHHHh--cCCHHHHHHHHh-cCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC-
Q 006173          104 RDEGSEYMEYAVS--TGKLNLITTLMG-YNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP-  179 (658)
Q Consensus       104 d~~G~TpLh~Aa~--~G~~~iv~~Ll~-~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~-  179 (658)
                      +..+++|||.++.  +++.++|++|++ .+.+.....+       .++.+. |.+|+++|+..++.|+|++|+++|++. 
T Consensus       111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~-------~~~~~~-~~~~~yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTN-------YYIHCL-GLVDIYVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhh-------hhcccc-chhhhhHhcCCCchHHHHHHHHcCCccc
Confidence            8889999999998  999999999997 4444333222       111114 999999999999999999999999953 


Q ss_pred             -------CCCCc-chhHHHHHH------hcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhh
Q 006173          180 -------LDGRQ-GFVLLKFLI------DSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRL  245 (658)
Q Consensus       180 -------~~~~~-g~t~Lh~A~------~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~  245 (658)
                             ..+.. +.|.||+++      .+++.|+++.|++++. ..+.+|.+|.||||++....     ..+.++++.+
T Consensus       183 g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Ga-dIN~kd~~G~TpLh~~~~~~-----~~~~eiv~~L  256 (672)
T PHA02730        183 GYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNV-SIHGRDEGGSLPIQYYWSCS-----TIDIEIVKLL  256 (672)
T ss_pred             ccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHcC-----cccHHHHHHH
Confidence                   12333 346666444      4568999999999965 45899999999999633321     1235777777


Q ss_pred             hc---ccccccccCCCCCCCCCCCCCCchhh-hhhhh---HHHHHHHHHHhhCCC----------ccchhHHHHHHHHHh
Q 006173          246 LY---QWIPIQEEYNPHPHPPSENVGGDLEK-QLSVT---SKIQLKKFFLQKIPS----------AFGSLRQKLKFVLWN  308 (658)
Q Consensus       246 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  308 (658)
                      +.   .|..-+....+.-.    ..-.+|-+ .....   .=..+++.|+....+          ...+...   .....
T Consensus       257 i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n---~~~~~  329 (672)
T PHA02730        257 IKDVDTCSVYDDISQPYIR----GVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYN---HYIID  329 (672)
T ss_pred             Hhccccccccccccchhhh----hhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccc---hhHHH
Confidence            75   12111111111100    00000000 00000   000111112111100          0000000   00000


Q ss_pred             hhhhhc-----hhhHHHHHhhhh-h-HHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCc----HHHHHHHHhh
Q 006173          309 NLMELA-----PSIKSIRDAKII-H-EQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGI----YEIVMGIMNS  377 (658)
Q Consensus       309 ~l~~~~-----~~~~~~~~~~~~-~-~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~----~~~v~~Ll~~  377 (658)
                      .+++..     ..+..+-..=.. + .-..++++.+++.+ ...+   . +..|.||||+|+..++    .++++.|+++
T Consensus       330 ~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G-AdIN---~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~  404 (672)
T PHA02730        330 NILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG-ATMD---K-TTDNNYPLHDYFVNNNNIVDVNVVRFIVEN  404 (672)
T ss_pred             HHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC-CCCC---c-CCCCCcHHHHHHHHcCCcchHHHHHHHHHc
Confidence            011111     001111100011 1 13356666776665 3333   2 3679999999999885    8999999999


Q ss_pred             cCCC-cccccccCCChHHHH---HHHhC---------CHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCCCCCC
Q 006173          378 YFPW-SLEFKNKDGYDIFKV---AVEHR---------REKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVP  444 (658)
Q Consensus       378 ~~~~-~~~~~d~~G~T~Lh~---A~~~~---------~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~  444 (658)
                      + .+ .++.+|..|+||||.   |...+         ..+++++|++.|+    ++|++|+.|+||||+|+..++.+.  
T Consensus       405 G-a~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA----DINakD~~G~TPLh~Aa~~~~~ei--  477 (672)
T PHA02730        405 N-GHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD----DIDMIDNENKTLLYYAVDVNNIQF--  477 (672)
T ss_pred             C-CCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhccc----chhccCCCCCCHHHHHHHhCCHHH--
Confidence            8 64 577789999999994   33332         2357999999998    889999999999999999887321  


Q ss_pred             hhHHhhHHHHHHHHHHHhhcC-cchhhhccC-CCCCchhhhHH
Q 006173          445 GAALQMQRELQWFKAVENCVH-PTLQDQLND-KDKTPREVFTK  485 (658)
Q Consensus       445 ~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n~-~G~Tp~dl~~~  485 (658)
                                     ++-++. ....+.+|+ .|.||++.+..
T Consensus       478 ---------------ve~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        478 ---------------ARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             ---------------HHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence                           121111 223667886 59999998754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-34  Score=311.82  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             CcHHHHHHHhCc--HHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhh
Q 006173          356 KKPMFKAARLGI--YEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHI  433 (658)
Q Consensus       356 ~tpLh~Aa~~G~--~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHl  433 (658)
                      .||||.|+..|+  .++++.|++.+ .+ ++.+|..|+||||+|+..++.+++++|++.|+    ++|.+|.+|+||||+
T Consensus       216 ~t~l~~a~~~~~~~~~iv~~Ll~~g-~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga----d~n~~d~~g~tpl~~  289 (480)
T PHA03100        216 ETPLHIAACYNEITLEVVNYLLSYG-VP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA----NPNLVNKYGDTPLHI  289 (480)
T ss_pred             HhHHHHHHHhCcCcHHHHHHHHHcC-CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCcHHHH
Confidence            466666666666  66666666665 33 34456666666666666666666666666665    556666666666666


Q ss_pred             HhhcCCC
Q 006173          434 AAMSVPS  440 (658)
Q Consensus       434 Aa~~g~~  440 (658)
                      |++.++.
T Consensus       290 A~~~~~~  296 (480)
T PHA03100        290 AILNNNK  296 (480)
T ss_pred             HHHhCCH
Confidence            6665553

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-34  Score=249.01  Aligned_cols=173  Identities=16%  Similarity=0.069  Sum_probs=145.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      .+.+.+++......+++++ +..|.+++.+.|++|+|||| .||..|+.++|.+|++. ..-.++.+ |+.||||||+||
T Consensus         5 ~~~~~~~~~~~~~kveel~-~s~~kSL~~r~dqD~Rt~LH-wa~S~g~~eiv~fLlsq-~nv~~ddk-DdaGWtPlhia~   80 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELI-QSDPKSLNARDDQDGRTPLH-WACSFGHVEIVYFLLSQ-PNVKPDDK-DDAGWTPLHIAA   80 (226)
T ss_pred             chHHHHHhhchHHHHHHHH-hcChhhhhccccccCCceee-eeeecCchhHHHHHHhc-CCCCCCCc-cccCCchhhhhh
Confidence            5677888888888999999 88898888888889999999 99999999999999986 33447788 999999999999


Q ss_pred             hcCCHHHHHHHHhc-CCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHH
Q 006173          116 STGKLNLITTLMGY-NEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLI  193 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~-~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~  193 (658)
                      +.|+.|+|+.|+.+ +++++...+.             |+||||+|+..|+.+|+++|+++++. ..+|..|.||||.|+
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~-------------G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA  147 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNG-------------GQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA  147 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCC-------------CcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH
Confidence            99999999999999 8887544444             99999999999999999999999984 678888899999888


Q ss_pred             hcCcHHHHHHHHHhCCCccccccCCCCcHhHHH
Q 006173          194 DSNLFDMALALLKCHPMIARADIGETGKILESL  226 (658)
Q Consensus       194 ~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A  226 (658)
                      .-|.++++++|+... ...+.+|+.|+||||.|
T Consensus       148 avGklkvie~Li~~~-a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  148 AVGKLKVIEYLISQG-APLNTQDKYGFTPLHHA  179 (226)
T ss_pred             hccchhhHHHHHhcC-CCCCcccccCccHHHHH
Confidence            888888888888774 33345555555555544

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=305.62  Aligned_cols=383  Identities=10%  Similarity=-0.015  Sum_probs=236.1

Q ss_pred             hhhhhhhHHHHHHHHh---CCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChH----HHHHHHhcCC------
Q 006173           29 IKDIDSYKQVTRYILE---NDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPAT----LVDKLLSKVP------   95 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~---G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~----iv~~Ll~~~~------   95 (658)
                      ..+.++.||||.|+..   |+.+.++.||  .++..++.+ +.+|+|||| .|+..|+.+    +|+.|++.++      
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll--~~ga~v~~~-~~~g~TpL~-~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~  102 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLL--DSGTNPLHK-NWRQLTPLE-EYTNSRHVKVNKDIAMALLEATGYSNIND  102 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHH--HCCCCcccc-CCCCCCHHH-HHHHcCChhHHHHHHHHHHhccCCCCCCC
Confidence            4456788999997655   8899999999  455556555 788999999 888877633    3344443211      


Q ss_pred             -----------------------ccccccccCCCCChHHHHHH--hcCCHHHHHHHHhcCCCCCcccccC---CCCCCCc
Q 006173           96 -----------------------RNCLQNFARDEGSEYMEYAV--STGKLNLITTLMGYNEELPNIKVEK---KDDPNIK  147 (658)
Q Consensus        96 -----------------------~~~l~~~~d~~G~TpLh~Aa--~~G~~~iv~~Ll~~~~~l~~~~~~~---~~d~~~~  147 (658)
                                             ..+++.+ |.+|+||||+|+  ..|+.+++++|+++|+++.. .+.+   |.++...
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~-d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~-~d~~~~~g~~~~~~  180 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFDLSVK-CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY-EDEDDEYGYAYDDY  180 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCCCCcc-CCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc-cccccccccccccc
Confidence                                   0236778 899999999653  57899999999999988642 2220   0001111


Q ss_pred             ccCCCCCcHHHHHHH-----------hCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcH--HHHHHHHHhCCCcc-
Q 006173          148 DEEKDDLLPVHMAAK-----------AGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLF--DMALALLKCHPMIA-  212 (658)
Q Consensus       148 ~~~~~G~TpLh~Aa~-----------~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~--~iv~~LL~~~~~~~-  212 (658)
                      +... +.||||+|+.           .|+.++|++|+++|++ +.+|.+|.||||+|+.+|+.  |+++.|++ +.+.. 
T Consensus       181 ~~~~-~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        181 QPRN-CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             cccc-cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence            1113 5799999986           4689999999999996 78899999999999999985  79999975 44332 


Q ss_pred             --ccccCCCCcHhHHHhcCCCCCC--CCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhh-H--HHHHHH
Q 006173          213 --RADIGETGKILESLSKRPKAFA--SGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVT-S--KIQLKK  285 (658)
Q Consensus       213 --~~~d~~g~TpLh~Aa~~~~~~~--s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~  285 (658)
                        ...|..|.+|+|+|+.-++.+.  ......+++.++..+.....  .+.-.   +....+.+...-+. .  .-....
T Consensus       259 ~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  333 (661)
T PHA02917        259 YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGI--MCSIV---PLWRNDKETISLILKTMNSDVLQH  333 (661)
T ss_pred             cccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCce--eEeee---cccccchHHHHHHHHHhchHHHHH
Confidence              3466779999999984322111  12356777777776642110  00000   00001111100000 0  000000


Q ss_pred             HHHhhCCCccchhHHHHHHHHHhhhhhhchhhH--HHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHH
Q 006173          286 FFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIK--SIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAA  363 (658)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa  363 (658)
                      .++......  .    ..-...+.|++.+..+.  ..+............++.++..   ...+...++.+|+||||.|+
T Consensus       334 ~l~~~~~~g--~----~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~---~ga~~~~~~~~G~TpL~~a~  404 (661)
T PHA02917        334 ILIEYMTFG--D----IDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKK---EGGDAVNHLDDGEIPIGHLC  404 (661)
T ss_pred             HHHHHHHcC--C----CcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHh---cCCCccccCCCCCChhHHHH
Confidence            000000000  0    00011222322221111  1110000001112233344332   12222334567999999998


Q ss_pred             HhC-----------------------cHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccc
Q 006173          364 RLG-----------------------IYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFM  420 (658)
Q Consensus       364 ~~G-----------------------~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~i  420 (658)
                      +.+                       ..++++.|++++ ++ ++.+|..|+||||+|+..++.+++++|++.|+    ++
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G-Ad-IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GA----di  478 (661)
T PHA02917        405 KSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYL-KD-INMIDKRGETLLHKAVRYNKQSLVSLLLESGS----DV  478 (661)
T ss_pred             HhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCC-CC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcC----CC
Confidence            543                       356789999999 66 57789999999999999999999999999999    88


Q ss_pred             cccccCCCchhhhHhh-cCC
Q 006173          421 ANIDEKRINILHIAAM-SVP  439 (658)
Q Consensus       421 n~~D~~G~TpLHlAa~-~g~  439 (658)
                      |.+|..|+||||+|+. .++
T Consensus       479 n~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        479 NIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             CCCCCCCCCHHHHHHHhCCC
Confidence            9999999999999996 444

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.6e-33  Score=275.57  Aligned_cols=220  Identities=12%  Similarity=0.068  Sum_probs=172.3

Q ss_pred             hCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHH
Q 006173           44 ENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLI  123 (658)
Q Consensus        44 ~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv  123 (658)
                      .++.+.++.|+ + ++.  + ..|.+|+|||| .|+..|+.++|+.|++.+. + ++..   +|.||||+|+..|+.++|
T Consensus         9 ~~~~~~~~~Li-s-~~a--~-~~D~~G~TpLh-~Aa~~g~~eiv~~Ll~~ga-~-~n~~---d~~TpLh~Aa~~g~~eiV   77 (284)
T PHA02791          9 WKSKQLKSFLS-S-KDA--F-KADVHGHSALY-YAIADNNVRLVCTLLNAGA-L-KNLL---ENEFPLHQAATLEDTKIV   77 (284)
T ss_pred             cCHHHHHHHHH-h-CCC--C-CCCCCCCcHHH-HHHHcCCHHHHHHHHHCcC-C-CcCC---CCCCHHHHHHHCCCHHHH
Confidence            45666666666 4 333  2 23778999999 9999999999999998843 2 3333   468999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcc-hhHHHHHHhcCcHHHH
Q 006173          124 TTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQG-FVLLKFLIDSNLFDMA  201 (658)
Q Consensus       124 ~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g-~t~Lh~A~~~g~~~iv  201 (658)
                      ++|++.++++ +.++.           . |+||||+|+..|+.+++++|++++++ +.++..| .||||+|+..|+.+++
T Consensus        78 ~lLL~~Gadv-n~~d~-----------~-G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eiv  144 (284)
T PHA02791         78 KILLFSGMDD-SQFDD-----------K-GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV  144 (284)
T ss_pred             HHHHHCCCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHH
Confidence            9999888775 44455           5 99999999999999999999998885 4566666 4899999999999999


Q ss_pred             HHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHH
Q 006173          202 LALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKI  281 (658)
Q Consensus       202 ~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (658)
                      ++|+++.+...   |                                                                 
T Consensus       145 k~LL~~~~~~~---d-----------------------------------------------------------------  156 (284)
T PHA02791        145 SYFLSEIPSTF---D-----------------------------------------------------------------  156 (284)
T ss_pred             HHHHhcCCccc---c-----------------------------------------------------------------
Confidence            99887633110   0                                                                 


Q ss_pred             HHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHH
Q 006173          282 QLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFK  361 (658)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~  361 (658)
                                                                                            ...|.||||+
T Consensus       157 ----------------------------------------------------------------------~~~g~TpLh~  166 (284)
T PHA02791        157 ----------------------------------------------------------------------LAILLSCIHI  166 (284)
T ss_pred             ----------------------------------------------------------------------cccCccHHHH
Confidence                                                                                  0126799999


Q ss_pred             HHHhCcHHHHHHHHhhcCCCcccccccCCChH-HHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhh
Q 006173          362 AARLGIYEIVMGIMNSYFPWSLEFKNKDGYDI-FKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILH  432 (658)
Q Consensus       362 Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  432 (658)
                      |+..|+.++++.|++++ ++ ++.+|..|.|| ||+|+.+|+.+++++|++.|+    ++|.+|.+| |||+
T Consensus       167 Aa~~g~~eiv~lLL~~g-Ad-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga----~in~~~~~~-~~l~  231 (284)
T PHA02791        167 TIKNGHVDMMILLLDYM-TS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDI----NIYSVNLEN-VLLD  231 (284)
T ss_pred             HHHcCCHHHHHHHHHCC-CC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCC----CCccCcccC-ccCC
Confidence            99999999999999998 65 46678888877 999999999999999999988    789999955 7773

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1e-32  Score=303.51  Aligned_cols=336  Identities=9%  Similarity=0.008  Sum_probs=213.7

Q ss_pred             hhhhhHHHHHHHHh--CCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCC--hHHHHHHHhcCCccccccccCCC
Q 006173           31 DIDSYKQVTRYILE--NDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVP--ATLVDKLLSKVPRNCLQNFARDE  106 (658)
Q Consensus        31 ~~~~~~~L~~A~~~--G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~--~~iv~~Ll~~~~~~~l~~~~d~~  106 (658)
                      +..+.+|||.|+..  |+.+.++.|+  +++..++.+ |.+|+|||| .|+..|+  .++|++|+++| .+ ++.+ |..
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLL--e~GADVN~k-D~~G~TPLH-~Aa~~g~~~~eIVklLLe~G-AD-VN~k-D~~  246 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLC--NNGVNVNLQ-NNHLITPLH-TYLITGNVCASVIKKIIELG-GD-MDMK-CVN  246 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHH--HcCCCCCCC-CCCCCCHHH-HHHHcCCCCHHHHHHHHHcC-CC-CCCC-CCC
Confidence            45688999998654  6789999999  455667665 889999999 9999996  49999999995 44 8888 999


Q ss_pred             CChHHHHHH-------------------------------------hcCCHHHHHHHHhcCCCCCcccccCCCCCCCccc
Q 006173          107 GSEYMEYAV-------------------------------------STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDE  149 (658)
Q Consensus       107 G~TpLh~Aa-------------------------------------~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~  149 (658)
                      |+||||+|+                                     ..|+.+++++|++.|++           +|.+|.
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-----------IN~kD~  315 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-----------LHYKDS  315 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-----------eeccCC
Confidence            999999864                                     23445555555555544           444444


Q ss_pred             CCCCCcHHHHHHH--hCcHHHHHHhccCCCC-CCCCCcchhHHHHHHh--------------cCcHHHHHHHHHhCCCcc
Q 006173          150 EKDDLLPVHMAAK--AGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLID--------------SNLFDMALALLKCHPMIA  212 (658)
Q Consensus       150 ~~~G~TpLh~Aa~--~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~--------------~g~~~iv~~LL~~~~~~~  212 (658)
                       . |+||||+|+.  .++.+++++|+++|++ +.+|..|.||||+|+.              .++.++++.|++++. .+
T Consensus       316 -~-G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA-DI  392 (764)
T PHA02716        316 -A-GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA-DI  392 (764)
T ss_pred             -C-CCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC-CC
Confidence             7 9999999875  4679999999999995 6789999999999875              368999999999854 55


Q ss_pred             ccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCC
Q 006173          213 RADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIP  292 (658)
Q Consensus       213 ~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (658)
                      +.+|..|.||||.++.....   .....+++.++........     .+                    ..+..++... 
T Consensus       393 n~kn~~G~TPLh~y~~~a~n---~~~~dIvklLis~~~~~~~-----~~--------------------~~~q~ll~~~-  443 (764)
T PHA02716        393 TAVNCLGYTPLTSYICTAQN---YMYYDIIDCLISDKVLNMV-----KH--------------------RILQDLLIRV-  443 (764)
T ss_pred             CCcCCCCCChHHHHHHHHHh---cChHHHHHHHHhCcchhhh-----hh--------------------hhhhhhhhcc-
Confidence            88999999999943221000   0122334444322110000     00                    0000000000 


Q ss_pred             CccchhHHHHHHHHHhhhh-hhchhhHHH-HHhhh-hhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHH
Q 006173          293 SAFGSLRQKLKFVLWNNLM-ELAPSIKSI-RDAKI-IHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYE  369 (658)
Q Consensus       293 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~  369 (658)
                      +.....        +.... +........ ..... .............    ......+..|..|+||||+|+..|+.+
T Consensus       444 d~~~~~--------lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~i----i~~~nvN~~D~~G~TPLh~Aa~~g~~~  511 (764)
T PHA02716        444 DDTPCI--------IHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAI----IERYNNAVCETSGMTPLHVSIISHTNA  511 (764)
T ss_pred             Ccchhh--------HHHHHHhcCcchhhhhhhhhhccccccchhhHHHH----HhhccccccCCCCCCHHHHHHHcCCcc
Confidence            000000        00000 000000000 00000 0000001111111    011123446788999999999999874


Q ss_pred             -----HHHHHHhhcCCCcccccccCCChHHHHHHHhCCH-----hHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          370 -----IVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRRE-----KVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       370 -----~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~-----~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                           ++++|++.+ .+ ++.+|++|+||||+|+++|+.     ++|++|++.|+.    ++..      .|++|...++
T Consensus       512 ~v~~e~~k~LL~~G-AD-IN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~----~~~~------~l~~~~~~~~  579 (764)
T PHA02716        512 NIVMDSFVYLLSIQ-YN-INIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPN----VDIV------IIFLDKCYAN  579 (764)
T ss_pred             chhHHHHHHHHhCC-CC-CcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCC----cchH------HHHHHhhhhh
Confidence                 459999998 65 677899999999999999976     999999999883    3333      3788886666


Q ss_pred             C
Q 006173          440 S  440 (658)
Q Consensus       440 ~  440 (658)
                      .
T Consensus       580 ~  580 (764)
T PHA02716        580 G  580 (764)
T ss_pred             h
Confidence            3

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.5e-33  Score=301.90  Aligned_cols=273  Identities=8%  Similarity=0.068  Sum_probs=212.5

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      ..+++|||.||..|+.+.|+.|+ + .+..++.+ +.+|+|||| +||..|+.++++.|++.+...    . ...+.+||
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll-~-~gadvn~~-d~~g~TpLh-~A~~~g~~~~v~~Ll~~~~~~----~-~~~~~~~l  105 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLL-T-RGHNVNQP-DHRDLTPLH-IICKEPNKLGMKEMIRSINKC----S-VFYTLVAI  105 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHH-H-CCCCCCCC-CCCCCCHHH-HHHHCccHhHHHHHHHHHhcc----c-cccchhhH
Confidence            45789999999999999999999 4 44556544 889999999 999999999999999884322    1 34678999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHh--CcHHHHHHhccCCCC-CCCCCc-chh
Q 006173          112 EYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKA--GKRDAVRHLLPKTRE-PLDGRQ-GFV  187 (658)
Q Consensus       112 h~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~--g~~~iv~~Ll~~~~~-~~~~~~-g~t  187 (658)
                      |.|+..|+.++++.|+..+.+....  .             ....+..+...  .+.+++++|+++|++ +..+.. |.|
T Consensus       106 ~~a~~~~~~ei~~~Ll~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~t  170 (477)
T PHA02878        106 KDAFNNRNVEIFKIILTNRYKNIQT--I-------------DLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNT  170 (477)
T ss_pred             HHHHHcCCHHHHHHHHhCcccCccc--C-------------cHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCC
Confidence            9999999999999999875432111  0             11111111112  235699999999995 567777 999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENV  267 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  267 (658)
                      |||+|+..|+.++++.|++.+.+ .+.+|..|.||||.|++.++.                                   
T Consensus       171 pLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~-----------------------------------  214 (477)
T PHA02878        171 ALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNK-----------------------------------  214 (477)
T ss_pred             HHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCH-----------------------------------
Confidence            99999999999999999998654 578899999999999988522                                   


Q ss_pred             CCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcc
Q 006173          268 GGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNT  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  347 (658)
                                                                                      ++++.+++.    ..+
T Consensus       215 ----------------------------------------------------------------~iv~~Ll~~----ga~  226 (477)
T PHA02878        215 ----------------------------------------------------------------PIVHILLEN----GAS  226 (477)
T ss_pred             ----------------------------------------------------------------HHHHHHHHc----CCC
Confidence                                                                            222233322    234


Q ss_pred             hhhhhcCCCcHHHHHHHh-CcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccC
Q 006173          348 HEEAQNVFKKPMFKAARL-GIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEK  426 (658)
Q Consensus       348 ~~~~~~~g~tpLh~Aa~~-G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~  426 (658)
                      .+.+|..|+||||+|+.. ++.++++.|++++ .+.....+..|+||||+|  .++.+++++|++.|+    ++|.+|.+
T Consensus       227 in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~ga----din~~d~~  299 (477)
T PHA02878        227 TDARDKCGNTPLHISVGYCKDYDILKLLLEHG-VDVNAKSYILGLTALHSS--IKSERKLKLLLEYGA----DINSLNSY  299 (477)
T ss_pred             CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCC----CCCCcCCC
Confidence            445778899999999976 7899999999999 765433334899999999  578899999999998    78999999


Q ss_pred             CCchhhhHhhcCC
Q 006173          427 RINILHIAAMSVP  439 (658)
Q Consensus       427 G~TpLHlAa~~g~  439 (658)
                      |+||||+|++.+.
T Consensus       300 g~TpL~~A~~~~~  312 (477)
T PHA02878        300 KLTPLSSAVKQYL  312 (477)
T ss_pred             CCCHHHHHHHHcC
Confidence            9999999998654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.6e-33  Score=303.14  Aligned_cols=262  Identities=9%  Similarity=0.000  Sum_probs=217.6

Q ss_pred             hhhhhhhHHHHHHHHhC---CHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCC-ChHHHHHHHhcCCccccccccC
Q 006173           29 IKDIDSYKQVTRYILEN---DWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDV-PATLVDKLLSKVPRNCLQNFAR  104 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G---~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g-~~~iv~~Ll~~~~~~~l~~~~d  104 (658)
                      ..+..+.||||.|+..|   +.+.++.|+  +.+.+++.+ +..|+|||| .|+..| +.+++++|+++| .+ ++.+ |
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll--~~Gadin~~-~~~g~TpLh-~A~~~~~~~~iv~lLl~~g-a~-in~~-~  114 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLL--EAGADVNAP-ERCGFTPLH-LYLYNATTLDVIKLLIKAG-AD-VNAK-D  114 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHH--HCCCCCCCC-CCCCCCHHH-HHHHcCCcHHHHHHHHHcC-CC-CCCC-C
Confidence            33455789999999999   999999999  555667665 779999999 999999 599999999994 44 7888 9


Q ss_pred             CCCChHHHHHH--hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhC--cHHHHHHhccCCCC-C
Q 006173          105 DEGSEYMEYAV--STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAG--KRDAVRHLLPKTRE-P  179 (658)
Q Consensus       105 ~~G~TpLh~Aa--~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g--~~~iv~~Ll~~~~~-~  179 (658)
                      ..|.||||+|+  ..++.+++++|++.|+++ +..+.           . |.||||+|+..+  +.+++++|++++++ .
T Consensus       115 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~-----------~-g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~  181 (471)
T PHA03095        115 KVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDL-----------Y-GMTPLAVLLKSRNANVELLRLLIDAGADVY  181 (471)
T ss_pred             CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCC-----------C-CCCHHHHHHHcCCCCHHHHHHHHHcCCCCc
Confidence            99999999999  567899999999999886 44555           6 999999999876  58999999999985 4


Q ss_pred             CCCCcchhHHHHHHhc--CcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCC
Q 006173          180 LDGRQGFVLLKFLIDS--NLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYN  257 (658)
Q Consensus       180 ~~~~~g~t~Lh~A~~~--g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~  257 (658)
                      ..|..|.||||+|+..  +..++++.|++.+ ..++.+|..|.||||+|+..+..-                        
T Consensus       182 ~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~------------------------  236 (471)
T PHA03095        182 AVDDRFRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCK------------------------  236 (471)
T ss_pred             ccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCch------------------------
Confidence            5589999999999865  6789999999885 456889999999999999885220                        


Q ss_pred             CCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHH
Q 006173          258 PHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIM  337 (658)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  337 (658)
                                                                                               ...+..+
T Consensus       237 -------------------------------------------------------------------------~~~v~~l  243 (471)
T PHA03095        237 -------------------------------------------------------------------------RSLVLPL  243 (471)
T ss_pred             -------------------------------------------------------------------------HHHHHHH
Confidence                                                                                     0011111


Q ss_pred             HHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          338 CAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       338 ~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      .    ....+.+.+|..|+||||+|+..|+.++++.|++.+ .+ ++.+|.+|+||||+|+.+|+.++++.|++.++
T Consensus       244 l----~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g-ad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~  314 (471)
T PHA03095        244 L----IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALG-AD-INAVSSDGNTPLSLMVRNNNGRAVRAALAKNP  314 (471)
T ss_pred             H----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC-CcccCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Confidence            1    222344557788999999999999999999999999 65 56789999999999999999999999999987

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=293.29  Aligned_cols=246  Identities=12%  Similarity=0.097  Sum_probs=193.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHH
Q 006173           35 YKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYA  114 (658)
Q Consensus        35 ~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~A  114 (658)
                      .++||.|+..|+.+.++.|+ + .+...+.+ +.+|.|||| .|+..|+.++|++|++.+. + .+.. +..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll-~-~g~~~n~~-~~~g~tpL~-~A~~~~~~~~v~~Ll~~ga-~-~~~~-~~~~~t~L~~A   75 (413)
T PHA02875          3 QVALCDAILFGELDIARRLL-D-IGINPNFE-IYDGISPIK-LAMKFRDSEAIKLLMKHGA-I-PDVK-YPDIESELHDA   75 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHH-H-CCCCCCcc-CCCCCCHHH-HHHHcCCHHHHHHHHhCCC-C-cccc-CCCcccHHHHH
Confidence            36788888888888888888 4 33444433 567888888 8888888888888888853 2 4455 67788888888


Q ss_pred             HhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHH
Q 006173          115 VSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLI  193 (658)
Q Consensus       115 a~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~  193 (658)
                      +..|+.++++.|++.++......+.           . |.||||+|+..|+.+++++|+++|++ ...+..|.||||+|+
T Consensus        76 ~~~g~~~~v~~Ll~~~~~~~~~~~~-----------~-g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~  143 (413)
T PHA02875         76 VEEGDVKAVEELLDLGKFADDVFYK-----------D-GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV  143 (413)
T ss_pred             HHCCCHHHHHHHHHcCCcccccccC-----------C-CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence            8888888888888888766555555           5 88888888888888888888888885 567778888888888


Q ss_pred             hcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhh
Q 006173          194 DSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEK  273 (658)
Q Consensus       194 ~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (658)
                      ..|+.++++.|++.+.+.                                                              
T Consensus       144 ~~~~~~~v~~Ll~~g~~~--------------------------------------------------------------  161 (413)
T PHA02875        144 MMGDIKGIELLIDHKACL--------------------------------------------------------------  161 (413)
T ss_pred             HcCCHHHHHHHHhcCCCC--------------------------------------------------------------
Confidence            888888888888763321                                                              


Q ss_pred             hhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhc
Q 006173          274 QLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQN  353 (658)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  353 (658)
                                                                                                 +.+|.
T Consensus       162 ---------------------------------------------------------------------------~~~d~  166 (413)
T PHA02875        162 ---------------------------------------------------------------------------DIEDC  166 (413)
T ss_pred             ---------------------------------------------------------------------------CCCCC
Confidence                                                                                       11345


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCC-ChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhh
Q 006173          354 VFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDG-YDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILH  432 (658)
Q Consensus       354 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G-~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  432 (658)
                      .|.||||+|+..|+.++++.|++++ ++. +..+..| .||+|+|+..++.+++++|++.|++.. .++..|.+|.|||+
T Consensus       167 ~g~TpL~~A~~~g~~eiv~~Ll~~g-a~~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n-~~~~~~~~~~t~l~  243 (413)
T PHA02875        167 CGCTPLIIAMAKGDIAICKMLLDSG-ANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN-IMFMIEGEECTILD  243 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCC-CCC-CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc-hHhhcCCCchHHHH
Confidence            6889999999999999999999999 765 4456555 689999999999999999999999443 44556889999999


Q ss_pred             hHhhcCC
Q 006173          433 IAAMSVP  439 (658)
Q Consensus       433 lAa~~g~  439 (658)
                      +++....
T Consensus       244 ~~~~~~~  250 (413)
T PHA02875        244 MICNMCT  250 (413)
T ss_pred             HHHhhcC
Confidence            9886654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-33  Score=243.77  Aligned_cols=207  Identities=18%  Similarity=0.266  Sum_probs=172.4

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCccccccccCC-CCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARD-EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~-~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      +.++.| .+|......-|+.|++. .+..++.+ |+ +|+||||+||+.|+.+|+.+|++...-.++.++.         
T Consensus         3 ~~~~~~-~~~~~~~~~kveel~~s-~~kSL~~r-~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd---------   70 (226)
T KOG4412|consen    3 YASLGK-AICENCEEFKVEELIQS-DPKSLNAR-DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD---------   70 (226)
T ss_pred             ccchHH-HHHhhchHHHHHHHHhc-Chhhhhcc-ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc---------
Confidence            467888 89999999999999998 55557777 55 9999999999999999999999732222222333         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccC-CCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHH
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPK-TRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESL  226 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~-~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~A  226 (658)
                        . ||||||.||..|+.++|+-|+.+ +++ +..++.|.|+||+|+..|.++|+++|++++ ..++.            
T Consensus        71 --a-GWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g-a~i~~------------  134 (226)
T KOG4412|consen   71 --A-GWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRI------------  134 (226)
T ss_pred             --c-CCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcC-CCCcc------------
Confidence              6 99999999999999999999999 664 788999999999999999999999999884 33232            


Q ss_pred             hcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHH
Q 006173          227 SKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVL  306 (658)
Q Consensus       227 a~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (658)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (226)
T KOG4412|consen  135 --------------------------------------------------------------------------------  134 (226)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccccc
Q 006173          307 WNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFK  386 (658)
Q Consensus       307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~  386 (658)
                                                                  +|..|+||||-||..|+.+++++|+..+  ..++..
T Consensus       135 --------------------------------------------kD~~~qtplHRAAavGklkvie~Li~~~--a~~n~q  168 (226)
T KOG4412|consen  135 --------------------------------------------KDKQGQTPLHRAAAVGKLKVIEYLISQG--APLNTQ  168 (226)
T ss_pred             --------------------------------------------cccccCchhHHHHhccchhhHHHHHhcC--CCCCcc
Confidence                                                        3445778888888888999999999888  446778


Q ss_pred             ccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHh
Q 006173          387 NKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAA  435 (658)
Q Consensus       387 d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  435 (658)
                      |+.|+||||.|.-.++.++..+|++.|+    ++...|++| |||-.|+
T Consensus       169 Dk~G~TpL~~al~e~~~d~a~lLV~~gA----d~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  169 DKYGFTPLHHALAEGHPDVAVLLVRAGA----DTDREDKEG-TALRIAC  212 (226)
T ss_pred             cccCccHHHHHHhccCchHHHHHHHhcc----ceeeccccC-chHHHHH
Confidence            9999999999988889999999999998    678899988 9987776

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.8e-32  Score=267.35  Aligned_cols=190  Identities=15%  Similarity=0.054  Sum_probs=161.8

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccc-------cccCCCCcHHHHhhhcCCChHHHHHHHhcCCcccccccc
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTC-------IIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFA  103 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~-------~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~  103 (658)
                      ...+-+||..||++|+.++|+.++ ++.......       -.+.+|-+||. +|+..||.++|+.|++++ .+ +|.. 
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLl-e~~~a~~e~~GsV~FDge~IegappLW-aAsaAGHl~vVk~L~~~g-a~-VN~t-  113 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLL-EHCRASPEQGGSVRFDGETIEGAPPLW-AASAAGHLEVVKLLLRRG-AS-VNDT-  113 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHH-HHhcCCccCCceEEeCCcccCCCchhh-HHhccCcHHHHHHHHHhc-Cc-cccc-
Confidence            345779999999999999999999 643322111       11456889999 999999999999999995 43 7776 


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      .....|||--||.-|+.|+|++|++++++. ++.|.           . |.|-||+||+.||.+|+++|++.+++ +.++
T Consensus       114 T~TNStPLraACfDG~leivKyLvE~gad~-~Ianr-----------h-GhTcLmIa~ykGh~~I~qyLle~gADvn~ks  180 (615)
T KOG0508|consen  114 TRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANR-----------H-GHTCLMIACYKGHVDIAQYLLEQGADVNAKS  180 (615)
T ss_pred             cccCCccHHHHHhcchhHHHHHHHHcCCCC-ccccc-----------C-CCeeEEeeeccCchHHHHHHHHhCCCcchhc
Confidence            677789999999999999999999999985 77888           7 99999999999999999999999996 7899


Q ss_pred             CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhc
Q 006173          183 RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLY  247 (658)
Q Consensus       183 ~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~  247 (658)
                      ..|+|+||.|+++|+.|+++.|++++..+  .+|..|.|||..|+..|..       ..+++++.
T Consensus       181 ~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~-------~iVe~L~~  236 (615)
T KOG0508|consen  181 YKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHT-------DIVERLLQ  236 (615)
T ss_pred             ccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcch-------HHHHHHhc
Confidence            99999999999999999999999986544  4677899999999999643       56666664

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-31  Score=292.36  Aligned_cols=276  Identities=14%  Similarity=0.154  Sum_probs=208.2

Q ss_pred             HHHHHHH---hCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhc-C-CChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           37 QVTRYIL---ENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIP-D-VPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        37 ~L~~A~~---~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~-~-g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      +||..+.   ..+.+.++.|+  +++.+++.+  .+|.|||| .++. . ++.++|++|+++| .+ ++.+ + .|.|||
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL--~~GadvN~~--~~g~t~l~-~~~~~~~~~~~iv~~Ll~~G-Ad-vn~~-~-~~~tpL   73 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLL--RTGFDVNEE--YRGNSILL-LYLKRKDVKIKIVKLLIDNG-AD-VNYK-G-YIETPL   73 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHH--HcCCCcccc--cCCCCHHH-HHHhcCCCChHHHHHHHHcC-CC-ccCC-C-CCCCcH
Confidence            4555444   57899999999  555667655  46899997 5443 3 4799999999995 33 6665 5 579999


Q ss_pred             HHHHhcC------CHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHh---CcHHHHHHhccCCCC--CC
Q 006173          112 EYAVSTG------KLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKA---GKRDAVRHLLPKTRE--PL  180 (658)
Q Consensus       112 h~Aa~~G------~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~--~~  180 (658)
                      |.|+..+      +.+++++|++.|+++ +.++.           . |.||||+|+..   |+.+++++|+++|++  ..
T Consensus        74 ~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~-----------~-g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~  140 (494)
T PHA02989         74 CAVLRNREITSNKIKKIVKLLLKFGADI-NLKTF-----------N-GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV  140 (494)
T ss_pred             HHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCC-----------C-CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccc
Confidence            9998654      578999999999986 55555           6 99999998876   679999999999996  46


Q ss_pred             CCCcchhHHHHHHhc--CcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCC
Q 006173          181 DGRQGFVLLKFLIDS--NLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNP  258 (658)
Q Consensus       181 ~~~~g~t~Lh~A~~~--g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~  258 (658)
                      +|..|.||||+|+..  ++.++++.|++++.+.....+..|.||||+|+..+..   ...                    
T Consensus       141 ~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~---~~~--------------------  197 (494)
T PHA02989        141 KNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDID---VIS--------------------  197 (494)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccc---ccc--------------------
Confidence            899999999998764  5899999999997766444678899999999876411   000                    


Q ss_pred             CCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHH
Q 006173          259 HPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMC  338 (658)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  338 (658)
                                                                                              .++++.++
T Consensus       198 ------------------------------------------------------------------------~~iv~~Ll  205 (494)
T PHA02989        198 ------------------------------------------------------------------------IKVIKYLI  205 (494)
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    12333333


Q ss_pred             HhhhhhhcchhhhhcCCCcHHHHHHHhC------cHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcC
Q 006173          339 AGAVDILNTHEEAQNVFKKPMFKAARLG------IYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       339 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G------~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                      +.+    .+.+.++..|.||||.++..+      ..+++++|++ + . .++.+|..|+||||+|+..++.+++++|++.
T Consensus       206 ~~G----a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~-a-dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~  278 (494)
T PHA02989        206 KKG----VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-Y-I-KINKKDKKGFNPLLISAKVDNYEAFNYLLKL  278 (494)
T ss_pred             hCC----CCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-C-C-CCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc
Confidence            332    222334556788888776543      4567776554 4 3 3567788899999999999999999999998


Q ss_pred             CCcccccccccccCCCchhhhHhhcCCC
Q 006173          413 PNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       413 ~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      |+    ++|.+|.+|+||||+|++.|+.
T Consensus       279 Ga----din~~d~~G~TpL~~A~~~~~~  302 (494)
T PHA02989        279 GD----DIYNVSKDGDTVLTYAIKHGNI  302 (494)
T ss_pred             CC----CccccCCCCCCHHHHHHHcCCH
Confidence            88    7788999999999999988875

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.9e-32  Score=266.39  Aligned_cols=162  Identities=15%  Similarity=0.111  Sum_probs=143.9

Q ss_pred             hhhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCC
Q 006173           26 EKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARD  105 (658)
Q Consensus        26 ~~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~  105 (658)
                      +.+-..+++-+||+.|+..|++++||.|+ + .+..++.. +....|||. .||..||.++|++|+++ +.+ +++. |+
T Consensus        76 ~FDge~IegappLWaAsaAGHl~vVk~L~-~-~ga~VN~t-T~TNStPLr-aACfDG~leivKyLvE~-gad-~~Ia-nr  148 (615)
T KOG0508|consen   76 RFDGETIEGAPPLWAASAAGHLEVVKLLL-R-RGASVNDT-TRTNSTPLR-AACFDGHLEIVKYLVEH-GAD-PEIA-NR  148 (615)
T ss_pred             EeCCcccCCCchhhHHhccCcHHHHHHHH-H-hcCccccc-cccCCccHH-HHHhcchhHHHHHHHHc-CCC-Cccc-cc
Confidence            33444667889999999999999999999 4 44666644 667789999 99999999999999998 444 7888 99


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcc
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQG  185 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g  185 (658)
                      +|.|.||+||++||.+|+++|++.|+++ +.+..           + |.|+||.|++.|+.|++++|+.+++....|..|
T Consensus       149 hGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~-----------k-GNTALH~caEsG~vdivq~Ll~~ga~i~~d~~G  215 (615)
T KOG0508|consen  149 HGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSY-----------K-GNTALHDCAESGSVDIVQLLLKHGAKIDVDGHG  215 (615)
T ss_pred             CCCeeEEeeeccCchHHHHHHHHhCCCc-chhcc-----------c-CchHHHhhhhcccHHHHHHHHhCCceeeecCCC
Confidence            9999999999999999999999999997 45555           6 999999999999999999999999988889999


Q ss_pred             hhHHHHHHhcCcHHHHHHHHHh
Q 006173          186 FVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       186 ~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                      .|||..|...|+.++|..|++.
T Consensus       216 mtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  216 MTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             CchHHHHhhhcchHHHHHHhcC
Confidence            9999999999999999999964

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=291.20  Aligned_cols=299  Identities=9%  Similarity=0.064  Sum_probs=222.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhhcCc--ccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHH
Q 006173           37 QVTRYILENDWKGLEDYIMSKTP--NALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYA  114 (658)
Q Consensus        37 ~L~~A~~~G~~~~v~~ll~~~~~--~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~A  114 (658)
                      .|+.+....+.+.+.+.+ +...  .......+..+.|||| .||..|+.++|+.|++.| .+ ++.+ |..|.||||+|
T Consensus         3 ~~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~~~~~~tPLh-~A~~~g~~e~vk~Ll~~g-ad-vn~~-d~~g~TpLh~A   77 (477)
T PHA02878          3 KLYKSMYTDNYETILKYI-EYIDHTENYSTSASLIPFIPLH-QAVEARNLDVVKSLLTRG-HN-VNQP-DHRDLTPLHII   77 (477)
T ss_pred             hHHHHHHhccHHHHHHHH-HHHhhhhhhcCcccccCcchHH-HHHHcCCHHHHHHHHHCC-CC-CCCC-CCCCCCHHHHH
Confidence            477788888877777776 3311  1111122456889999 999999999999999994 33 7888 99999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHHHHHh
Q 006173          115 VSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLID  194 (658)
Q Consensus       115 a~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~~  194 (658)
                      |..|+.++++.|++.+.....   .           . +.+||+.|+..|+.+++++|+..+.....+.. ...+.....
T Consensus        78 ~~~g~~~~v~~Ll~~~~~~~~---~-----------~-~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~-~~~~~~~~~  141 (477)
T PHA02878         78 CKEPNKLGMKEMIRSINKCSV---F-----------Y-TLVAIKDAFNNRNVEIFKIILTNRYKNIQTID-LVYIDKKSK  141 (477)
T ss_pred             HHCccHhHHHHHHHHHhcccc---c-----------c-chhhHHHHHHcCCHHHHHHHHhCcccCcccCc-HHHHhhccc
Confidence            999999999999988654311   2           4 88999999999999999999988653221111 111222122


Q ss_pred             cC--cHHHHHHHHHhCCCccccccCC-CCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCch
Q 006173          195 SN--LFDMALALLKCHPMIARADIGE-TGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDL  271 (658)
Q Consensus       195 ~g--~~~iv~~LL~~~~~~~~~~d~~-g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  271 (658)
                      .+  ..++++.|++++.+ ++.++.+ |.||||+|+..++.                                       
T Consensus       142 ~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~---------------------------------------  181 (477)
T PHA02878        142 DDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQ---------------------------------------  181 (477)
T ss_pred             hhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCH---------------------------------------
Confidence            22  34599999998655 4677777 99999999998632                                       


Q ss_pred             hhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhh
Q 006173          272 EKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEA  351 (658)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  351 (658)
                                                                                  ++++.+++.    ..+.+.+
T Consensus       182 ------------------------------------------------------------~iv~~Ll~~----gad~n~~  197 (477)
T PHA02878        182 ------------------------------------------------------------RLTELLLSY----GANVNIP  197 (477)
T ss_pred             ------------------------------------------------------------HHHHHHHHC----CCCCCCc
Confidence                                                                        222233322    2334457


Q ss_pred             hcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHh-CCHhHHHHHhcCCCccccccccccc-CCCc
Q 006173          352 QNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEH-RREKVFNIIFNFPNIYPFFMANIDE-KRIN  429 (658)
Q Consensus       352 ~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~-~~~~iv~~Ll~~~~~~~~~in~~D~-~G~T  429 (658)
                      |..|.||||.|+..|+.++++.|++.+ ++ ++.+|..|+||||+|+.. ++.+++++|++.|+    ++|.+|. .|+|
T Consensus       198 d~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga----dvn~~~~~~g~T  271 (477)
T PHA02878        198 DKTNNSPLHHAVKHYNKPIVHILLENG-AS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGV----DVNAKSYILGLT  271 (477)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcC-CC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC----CCCccCCCCCCC
Confidence            788999999999999999999999998 65 567899999999999976 78999999999998    7788886 8999


Q ss_pred             hhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhc-CcchhhhccCCCCCchhhhHH
Q 006173          430 ILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCV-HPTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       430 pLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      |||+|+  ++.+                 .++.++ .....+.+|.+|.||++++.+
T Consensus       272 pLh~A~--~~~~-----------------~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        272 ALHSSI--KSER-----------------KLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HHHHHc--cCHH-----------------HHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999994  2211                 111111 122367899999999999865

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.98  E-value=4.6e-32  Score=302.95  Aligned_cols=398  Identities=14%  Similarity=0.107  Sum_probs=215.8

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCCh
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSE  109 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~T  109 (658)
                      .+..+.+|||.|+..|+++.++.++  .+....+.. +-.|.|||| .||+.+..+++++|++.+. + +... +.+..|
T Consensus       238 ~d~~gl~~lh~a~~~g~~~i~~~l~--~~ga~~~~~-~vr~~tplh-~AA~~~~~e~~~~ll~~ga-~-~~~~-~~~~kt  310 (1143)
T KOG4177|consen  238 KDESGLTPLHVAAFMGHLDIVKLLL--QHGASVNVS-TVRGETPLH-MAARAGQVEVCKLLLQNGA-D-VLAK-ARDDQT  310 (1143)
T ss_pred             ccccCccHHHHHHhccchhHHHHHH--hcccccCcc-cccccCcch-hhhccchhhhHhhhhccCc-c-cccc-cccccC
Confidence            3344555555555555555555555  222222222 444555555 5555555555555555521 1 3333 444455


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhH
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVL  188 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~  188 (658)
                      |+|+|...|+.++++++++.++.....+.            . |.||||+++..|+.++..+|...++. ...+..|.||
T Consensus       311 ~l~~a~~~g~~~i~~~~l~~~~~~~aar~------------~-g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~p  377 (1143)
T KOG4177|consen  311 PLHIASRLGHEEIVHLLLQAGATPNAART------------A-GYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTP  377 (1143)
T ss_pred             hhhhhcccchHHHHHHHhhccCCccccCc------------C-CcccccHhhhhhhHHHHHHhhccccccCcccccCCcc
Confidence            55555555555555555544444322222            4 77777777777777777777766663 5667777788


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccC----CCCCCCCC
Q 006173          189 LKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEY----NPHPHPPS  264 (658)
Q Consensus       189 Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~----~~~~~~~~  264 (658)
                      +|.|+.+|..+++++++.+... .+.++.+|.||||.++.+++.       .+++-++......+...    ++....+.
T Consensus       378 l~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~-------~~v~l~l~~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  378 LHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNP-------RVVKLLLKRGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             hhhhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhhccCc-------ceEEEEeccCCChhhHhhcCCChhhhhhh
Confidence            8888888888888777777544 677777778888877776532       11111111111000000    00000000


Q ss_pred             CCCCCchhhhhhhhHHHHHHHHHHhhC-----CCccch---hHHHHHH--HHHhhhhhhchhh--HHHHHhhhhhHHHH-
Q 006173          265 ENVGGDLEKQLSVTSKIQLKKFFLQKI-----PSAFGS---LRQKLKF--VLWNNLMELAPSI--KSIRDAKIIHEQTL-  331 (658)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~--~~~~~l~~~~~~~--~~~~~~~~~~~~~~-  331 (658)
                         .+++         .+...-+++..     ....+.   ....+.+  ..+..+++.....  .........|.... 
T Consensus       450 ---~g~~---------~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~  517 (1143)
T KOG4177|consen  450 ---KGRY---------LQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE  517 (1143)
T ss_pred             ---cccH---------hhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh
Confidence               0000         00000000000     000000   0000000  1122222222111  11111112222211 


Q ss_pred             HHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhc
Q 006173          332 EILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFN  411 (658)
Q Consensus       332 ~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  411 (658)
                      +.+......+ ........++..|.||||.||.+|+.++|++||+++ .+ ++.+|+.|+||||.|+..|+.+|+.+|++
T Consensus       518 ~~v~~~~~l~-~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g-Ad-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk  594 (1143)
T KOG4177|consen  518 DTVKVAKILL-EHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG-AD-VNAKDKLGYTPLHQAAQQGHNDIAELLLK  594 (1143)
T ss_pred             hhHHHHHHHh-hcCCceehhcccccchHHHHHhcCCchHHHHhhhCC-cc-ccccCCCCCChhhHHHHcChHHHHHHHHH
Confidence            1222222222 334455568888999999999999999999999999 66 55678999999999999999999999999


Q ss_pred             CCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcCcchhhhccCCCCCchhhhHH
Q 006173          412 FPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       412 ~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      +|+    .+|+.|.+|.||||+|++.|+...+.        .+.   .+............|..|.||.++.++
T Consensus       595 ~GA----~vna~d~~g~TpL~iA~~lg~~~~~k--------~l~---~~~~~~~~~~~~~e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  595 HGA----SVNAADLDGFTPLHIAVRLGYLSVVK--------LLK---VVTATPAATDPVKENRKGAVPEDVAEE  653 (1143)
T ss_pred             cCC----CCCcccccCcchhHHHHHhcccchhh--------HHH---hccCccccccchhhhhcccChhhHHHH
Confidence            999    88999999999999999999975442        110   000000001134577889999988654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.3e-31  Score=292.07  Aligned_cols=262  Identities=15%  Similarity=0.151  Sum_probs=212.1

Q ss_pred             CCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH-----HHhcCC
Q 006173           45 NDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY-----AVSTGK  119 (658)
Q Consensus        45 G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~-----Aa~~G~  119 (658)
                      ...+.++.++ +. +. .....+..+.|||| .|+..|+.++|+.|++.| .+ ++.. +..|.||||+     |+..|+
T Consensus        13 ~~~~~~~~~~-~~-~~-~~~~~~~~~~t~L~-~A~~~~~~~ivk~Ll~~g-~~-~~~~-~~~~~t~L~~~~~~~a~~~~~   85 (480)
T PHA03100         13 IKVKNIKYII-ME-DD-LNDYSYKKPVLPLY-LAKEARNIDVVKILLDNG-AD-INSS-TKNNSTPLHYLSNIKYNLTDV   85 (480)
T ss_pred             HHHHHHHHHH-hc-Cc-cchhhhcccchhhh-hhhccCCHHHHHHHHHcC-CC-CCCc-cccCcCHHHHHHHHHHHhhch
Confidence            3445666667 32 23 22333778899999 999999999999999985 33 6677 8889999999     999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHH--HhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcC
Q 006173          120 LNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAA--KAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSN  196 (658)
Q Consensus       120 ~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa--~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g  196 (658)
                      .+++++|++.|+++ +..+.           . |.||||+|+  ..|+.+++++|++++++ ...+..|.||||+|+..|
T Consensus        86 ~~iv~~Ll~~ga~i-~~~d~-----------~-g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  152 (480)
T PHA03100         86 KEIVKLLLEYGANV-NAPDN-----------N-GITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN  152 (480)
T ss_pred             HHHHHHHHHCCCCC-CCCCC-----------C-CCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence            99999999999887 55555           6 999999999  99999999999999985 578889999999999999


Q ss_pred             --cHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhh
Q 006173          197 --LFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQ  274 (658)
Q Consensus       197 --~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (658)
                        +.++++.|++++.+. +                                                             
T Consensus       153 ~~~~~iv~~Ll~~g~di-n-------------------------------------------------------------  170 (480)
T PHA03100        153 KIDLKILKLLIDKGVDI-N-------------------------------------------------------------  170 (480)
T ss_pred             CChHHHHHHHHHCCCCc-c-------------------------------------------------------------
Confidence              899999998874432 1                                                             


Q ss_pred             hhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcC
Q 006173          275 LSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNV  354 (658)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  354 (658)
                                                                                                 .++..
T Consensus       171 ---------------------------------------------------------------------------~~d~~  175 (480)
T PHA03100        171 ---------------------------------------------------------------------------AKNRY  175 (480)
T ss_pred             ---------------------------------------------------------------------------cccCC
Confidence                                                                                       12345


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCC------ChHHHHHHHhCC--HhHHHHHhcCCCcccccccccccC
Q 006173          355 FKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDG------YDIFKVAVEHRR--EKVFNIIFNFPNIYPFFMANIDEK  426 (658)
Q Consensus       355 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G------~T~Lh~A~~~~~--~~iv~~Ll~~~~~~~~~in~~D~~  426 (658)
                      |.||||+|+..|+.+++++|++++ .+ .+..+..|      .||||+|+..++  .+++++|++.|+    ++|.+|.+
T Consensus       176 g~tpL~~A~~~~~~~iv~~Ll~~g-a~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~----din~~d~~  249 (480)
T PHA03100        176 GYTPLHIAVEKGNIDVIKFLLDNG-AD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV----PINIKDVY  249 (480)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC-CC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC----CCCCCCCC
Confidence            889999999999999999999999 66 44567788      999999999999  999999999998    78999999


Q ss_pred             CCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcC-cchhhhccCCCCCchhhhHHH
Q 006173          427 RINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVH-PTLQDQLNDKDKTPREVFTKE  486 (658)
Q Consensus       427 G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n~~G~Tp~dl~~~~  486 (658)
                      |+||||+|+..|+.+.+                 +.++. ....+.+|.+|+||++++.+.
T Consensus       250 g~TpL~~A~~~~~~~iv-----------------~~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        250 GFTPLHYAVYNNNPEFV-----------------KYLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             CCCHHHHHHHcCCHHHH-----------------HHHHHcCCCCCccCCCCCcHHHHHHHh
Confidence            99999999999984222                 11111 123678999999999998653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.98  E-value=2.8e-31  Score=264.69  Aligned_cols=160  Identities=15%  Similarity=0.113  Sum_probs=136.3

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ..+.++.||||.|+..|+.+.++.|+ +. +...+.   .+|+|||| .|+..|+.++|+.|++.+ .+ ++.+ |..|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll-~~-ga~~n~---~d~~TpLh-~Aa~~g~~eiV~lLL~~G-ad-vn~~-d~~G~   95 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLL-NA-GALKNL---LENEFPLH-QAATLEDTKIVKILLFSG-MD-DSQF-DDKGN   95 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHH-HC-cCCCcC---CCCCCHHH-HHHHCCCHHHHHHHHHCC-CC-CCCC-CCCCC
Confidence            45677999999999999999999999 43 343432   35799999 999999999999999984 33 7788 99999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCC-CcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchh
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDD-LLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFV  187 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G-~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t  187 (658)
                      ||||+||..|+.+++++|++.++++. ..+.           . | .||||+|+..|+.++|++|+++++.......|.|
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~-----------~-g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~T  162 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKNWRLM-FYGK-----------T-GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS  162 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcC-ccCC-----------C-CCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCcc
Confidence            99999999999999999999999874 3444           4 6 5999999999999999999998764332246899


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPM  210 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~  210 (658)
                      |||+|+..|+.++++.||+.+++
T Consensus       163 pLh~Aa~~g~~eiv~lLL~~gAd  185 (284)
T PHA02791        163 CIHITIKNGHVDMMILLLDYMTS  185 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC
Confidence            99999999999999999998543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.2e-30  Score=289.55  Aligned_cols=387  Identities=11%  Similarity=-0.021  Sum_probs=242.2

Q ss_pred             HHHHHHHHhhcCcccccccccCCCCcHHHHhhhcC---CChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHH--
Q 006173           47 WKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPD---VPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLN--  121 (658)
Q Consensus        47 ~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~---g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~--  121 (658)
                      ++.+|.++ . ++...+ ..|.+|+|||| .||..   |+.++|+.||+.| .+ ++.. |..|+||||+|+..|+.+  
T Consensus        12 ~~~~~~l~-~-~~~~~~-~~d~~g~t~Lh-~a~~~~~~~~~~~v~~Ll~~g-a~-v~~~-~~~g~TpL~~Aa~~g~~~v~   84 (661)
T PHA02917         12 LDELKQML-R-DRDPND-TRNQFKNNALH-AYLFNEHCNNVEVVKLLLDSG-TN-PLHK-NWRQLTPLEEYTNSRHVKVN   84 (661)
T ss_pred             HHHHHHHH-h-ccCccc-ccCCCCCcHHH-HHHHhhhcCcHHHHHHHHHCC-CC-cccc-CCCCCCHHHHHHHcCChhHH
Confidence            46788888 3 444444 44899999999 97555   8899999999995 33 6778 999999999999999954  


Q ss_pred             --HHHHHHhcCC--CCCcc--------c----------ccCCCCCCCcccCCCCCcHHHHH--HHhCcHHHHHHhccCCC
Q 006173          122 --LITTLMGYNE--ELPNI--------K----------VEKKDDPNIKDEEKDDLLPVHMA--AKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       122 --iv~~Ll~~~~--~l~~~--------~----------~~~~~d~~~~~~~~~G~TpLh~A--a~~g~~~iv~~Ll~~~~  177 (658)
                        +++.|++.+.  +....        .          -..|+|+|.+|. . |+||||.|  +..|+.++|++|+++|+
T Consensus        85 ~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~-~-g~T~L~~~~a~~~~~~eivklLi~~Ga  162 (661)
T PHA02917         85 KDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE-N-HRSVIENYVMTDDPVPEIIDLFIENGC  162 (661)
T ss_pred             HHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC-C-CccHHHHHHHccCCCHHHHHHHHHcCC
Confidence              5678886532  21110        0          124889999998 8 99999954  45789999999999999


Q ss_pred             CC-C---CCCcc-----------hhHHHHHHh-----------cCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCC
Q 006173          178 EP-L---DGRQG-----------FVLLKFLID-----------SNLFDMALALLKCHPMIARADIGETGKILESLSKRPK  231 (658)
Q Consensus       178 ~~-~---~~~~g-----------~t~Lh~A~~-----------~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~  231 (658)
                      +. .   .+..|           .||||+|+.           .++.+++++|++.+. .++.+|.+|.||||+|+.+++
T Consensus       163 ~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga-dvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        163 SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI-KPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             CccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC-CcccCCCCCCcHHHHHHHcCC
Confidence            52 2   23344           599999986           468999999999865 458889999999999999963


Q ss_pred             CCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCc---hhhhhh----h--hHHHHHHHHHHhhCCCccchh----
Q 006173          232 AFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGD---LEKQLS----V--TSKIQLKKFFLQKIPSAFGSL----  298 (658)
Q Consensus       232 ~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~----  298 (658)
                      .     ..++++.++.. ..+..   .... .+ ..++.   +..|+.    .  ..-..++++++...-......    
T Consensus       242 ~-----~~eivk~Li~g-~d~~~---~~~~-~~-~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~  310 (661)
T PHA02917        242 I-----DIDIVKLLMKG-IDNTA---YSYI-DD-LTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVP  310 (661)
T ss_pred             C-----cHHHHHHHHhC-Ccccc---cccc-cC-cccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeec
Confidence            2     23567776642 21110   0000 00 00000   000110    0  012244555555442110000    


Q ss_pred             HHHHHHHHHhhhhhh-chhhH-HHHHhhh-hhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHH
Q 006173          299 RQKLKFVLWNNLMEL-APSIK-SIRDAKI-IHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIM  375 (658)
Q Consensus       299 ~~~~~~~~~~~l~~~-~~~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll  375 (658)
                      ...........+... ...+. ....... ......++++.+++.+    .+.+.++..|.|+.    ...+.++++.||
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~G----Advn~~~~~g~~~~----~~~~~~~i~~LL  382 (661)
T PHA02917        311 LWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYG----AVVNKEAIHGYFRN----INIDSYTMKYLL  382 (661)
T ss_pred             ccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcC----CCCCCCCccccchh----hcCCHHHHHHHH
Confidence            000000011111110 00000 0000000 0011234566666555    33344667787754    466788999999


Q ss_pred             hh-cCCCcccccccCCChHHHHHHHhC-----------------------CHhHHHHHhcCCCcccccccccccCCCchh
Q 006173          376 NS-YFPWSLEFKNKDGYDIFKVAVEHR-----------------------REKVFNIIFNFPNIYPFFMANIDEKRINIL  431 (658)
Q Consensus       376 ~~-~~~~~~~~~d~~G~T~Lh~A~~~~-----------------------~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  431 (658)
                      .+ + .+..+. +.+|+||||.|++.+                       ..+++++|+++|+    ++|.+|..|+|||
T Consensus       383 ~~~g-a~~~~~-~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GA----dIN~kd~~G~TpL  456 (661)
T PHA02917        383 KKEG-GDAVNH-LDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLK----DINMIDKRGETLL  456 (661)
T ss_pred             HhcC-CCcccc-CCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCC----CCCCCCCCCcCHH
Confidence            75 5 554554 667999999998543                       3567899999998    8899999999999


Q ss_pred             hhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcC-cchhhhccCCCCCchhhhHH
Q 006173          432 HIAAMSVPSTEVPGAALQMQRELQWFKAVENCVH-PTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       432 HlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      |+|+..++.+                 .++.++. ....+.+|..|+||+.++..
T Consensus       457 h~Aa~~~~~~-----------------~v~~Ll~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        457 HKAVRYNKQS-----------------LVSLLLESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             HHHHHcCCHH-----------------HHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            9999887631                 1111111 22367899999999999864

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.9e-31  Score=281.80  Aligned_cols=243  Identities=13%  Similarity=0.052  Sum_probs=196.3

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCccc
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDE  149 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~  149 (658)
                      .+++|| .|+..|+.++|++|++.| .+ ++.. +..|.||||+|+..|+.+++++|++.|++. +..+.          
T Consensus         2 ~~~~L~-~A~~~g~~~iv~~Ll~~g-~~-~n~~-~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~----------   66 (413)
T PHA02875          2 DQVALC-DAILFGELDIARRLLDIG-IN-PNFE-IYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYP----------   66 (413)
T ss_pred             CchHHH-HHHHhCCHHHHHHHHHCC-CC-CCcc-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCC----------
Confidence            478999 999999999999999984 33 6667 788999999999999999999999988764 44444          


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHhccCCCC--CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHh
Q 006173          150 EKDDLLPVHMAAKAGKRDAVRHLLPKTRE--PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLS  227 (658)
Q Consensus       150 ~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa  227 (658)
                       . |.||||.|+..|+.+++++|++.++.  ...+..|.||||+|+..|+.++++.|++.+.+. +              
T Consensus        67 -~-~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~--------------  129 (413)
T PHA02875         67 -D-IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-D--------------  129 (413)
T ss_pred             -C-cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-C--------------
Confidence             5 89999999999999999999998873  455677999999999999999999999874332 1              


Q ss_pred             cCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHH
Q 006173          228 KRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLW  307 (658)
Q Consensus       228 ~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (658)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (413)
T PHA02875        130 --------------------------------------------------------------------------------  129 (413)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccc
Q 006173          308 NNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKN  387 (658)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d  387 (658)
                                                                .++..|.||||+|+..|+.++++.|++++ ++ ++.+|
T Consensus       130 ------------------------------------------~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-~~-~~~~d  165 (413)
T PHA02875        130 ------------------------------------------IPNTDKFSPLHLAVMMGDIKGIELLIDHK-AC-LDIED  165 (413)
T ss_pred             ------------------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CC-CCCCC
Confidence                                                      12345789999999999999999999998 65 56779


Q ss_pred             cCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCC-chhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcCc
Q 006173          388 KDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRI-NILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHP  466 (658)
Q Consensus       388 ~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~-TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~~  466 (658)
                      ..|+||||+|+..|+.+++++|++.|+    ++|..|.+|. ||||+|+..|+.+.+.           +  -++....+
T Consensus       166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga----~~n~~~~~~~~t~l~~A~~~~~~~iv~-----------~--Ll~~gad~  228 (413)
T PHA02875        166 CCGCTPLIIAMAKGDIAICKMLLDSGA----NIDYFGKNGCVAALCYAIENNKIDIVR-----------L--FIKRGADC  228 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCcCCCCCCchHHHHHHHcCCHHHHH-----------H--HHHCCcCc
Confidence            999999999999999999999999998    7788888885 8999999999853321           1  12222333


Q ss_pred             chhhhccCCCCCchhhhHH
Q 006173          467 TLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       467 ~~~~~~n~~G~Tp~dl~~~  485 (658)
                      ......+.+|.||++++..
T Consensus       229 n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        229 NIMFMIEGEECTILDMICN  247 (413)
T ss_pred             chHhhcCCCchHHHHHHHh
Confidence            3344568889999988643

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.1e-30  Score=279.72  Aligned_cols=262  Identities=13%  Similarity=0.129  Sum_probs=207.5

Q ss_pred             hhhhHHHHHHHHhC--CHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCC------ChHHHHHHHhcCCcccccccc
Q 006173           32 IDSYKQVTRYILEN--DWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDV------PATLVDKLLSKVPRNCLQNFA  103 (658)
Q Consensus        32 ~~~~~~L~~A~~~G--~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g------~~~iv~~Ll~~~~~~~l~~~~  103 (658)
                      .++.+|||.++..+  +.+.|+.|+  +++.+++.+ + .+.|||| .|+..+      +.++|++|+++| .+ ++.+ 
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll--~~GAdvn~~-~-~~~tpL~-~a~~~~~~~~~~~~~iv~~Ll~~G-ad-in~~-  104 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLI--DNGADVNYK-G-YIETPLC-AVLRNREITSNKIKKIVKLLLKFG-AD-INLK-  104 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHH--HcCCCccCC-C-CCCCcHH-HHHhccCcchhhHHHHHHHHHHCC-CC-CCCC-
Confidence            34778887766554  689999999  456666654 3 5799999 987654      578999999994 44 8888 


Q ss_pred             CCCCChHHHHHHhc---CCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHh--CcHHHHHHhccCCCC
Q 006173          104 RDEGSEYMEYAVST---GKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKA--GKRDAVRHLLPKTRE  178 (658)
Q Consensus       104 d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~--g~~~iv~~Ll~~~~~  178 (658)
                      |.+|.||||.|+..   |+.+++++|+++|+++...++.           . |.||||+|+..  ++.++|++|+++|++
T Consensus       105 d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~-----------~-g~tpLh~a~~~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989        105 TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS-----------R-GYNLLHMYLESFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC-----------C-CCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            99999999988765   6899999999999987455666           6 99999999865  689999999999996


Q ss_pred             C-C-CCCcchhHHHHHHhcC----cHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccc
Q 006173          179 P-L-DGRQGFVLLKFLIDSN----LFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPI  252 (658)
Q Consensus       179 ~-~-~~~~g~t~Lh~A~~~g----~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~  252 (658)
                      . . .+..|.||||.|+..+    +.+++++|++++.+ .+.+|..|.||||.++..+.....                 
T Consensus       173 i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~-----------------  234 (494)
T PHA02989        173 LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSK-----------------  234 (494)
T ss_pred             ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcc-----------------
Confidence            3 3 5789999999997764    89999999998655 467777899999988766321000                 


Q ss_pred             cccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHH
Q 006173          253 QEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLE  332 (658)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (658)
                                                                                                  ...+
T Consensus       235 ----------------------------------------------------------------------------~~~~  238 (494)
T PHA02989        235 ----------------------------------------------------------------------------KEFK  238 (494)
T ss_pred             ----------------------------------------------------------------------------cchH
Confidence                                                                                        0011


Q ss_pred             HHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcC
Q 006173          333 ILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       333 ~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                      +++.+.     ...+.+.+|..|+||||+|+..|+.++++.|++++ .+ ++.+|..|+||||+|+.+++.++++.|++.
T Consensus       239 il~~l~-----~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-ad-in~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        239 VLNFIL-----KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG-DD-IYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             HHHHHH-----hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-CC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            122111     12344557889999999999999999999999999 65 577899999999999999999999999998


Q ss_pred             CC
Q 006173          413 PN  414 (658)
Q Consensus       413 ~~  414 (658)
                      +.
T Consensus       312 ~p  313 (494)
T PHA02989        312 KP  313 (494)
T ss_pred             CC
Confidence            54

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.2e-30  Score=279.33  Aligned_cols=172  Identities=16%  Similarity=0.159  Sum_probs=136.2

Q ss_pred             HHHHHHHHhC---CHHHHHHHHhhcCcccccccccCCCCcHHHHhh--hcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           36 KQVTRYILEN---DWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVG--IPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        36 ~~L~~A~~~G---~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~A--a~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      .+||..+...   +.+.|+.++ +. .+ .+..  .+|.|+++ .+  ...++.++|+.|+++| .+ ++.. |..|.||
T Consensus         4 ~~l~~y~~~~~~~~~~~v~~ll-~~-~~-~~~~--~~~~~~~~-~yl~~~~~~~~iv~~Ll~~G-ad-vn~~-d~~g~Tp   74 (489)
T PHA02798          4 DNLYNYITFSDNVKLSTVKLLI-KS-CN-PNEI--VNEYSIFQ-KYLQRDSPSTDIVKLFINLG-AN-VNGL-DNEYSTP   74 (489)
T ss_pred             hhhHHHeeecCcccHHHHHHHH-hc-CC-hhhh--cccchHHH-HHHhCCCCCHHHHHHHHHCC-CC-CCCC-CCCCCCh
Confidence            3455555544   467899999 43 22 2222  45678776 44  4456899999999995 34 8888 9999999


Q ss_pred             HHHHHhc-----CCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhC---cHHHHHHhccCCCC-CCC
Q 006173          111 MEYAVST-----GKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAG---KRDAVRHLLPKTRE-PLD  181 (658)
Q Consensus       111 Lh~Aa~~-----G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g---~~~iv~~Ll~~~~~-~~~  181 (658)
                      ||.|+..     ++.+++++|++.|+++ +..+.           . |+||||+|+..|   +.+++++|+++|++ ...
T Consensus        75 L~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~-----------~-G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~  141 (489)
T PHA02798         75 LCTILSNIKDYKHMLDIVKILIENGADI-NKKNS-----------D-GETPLYCLLSNGYINNLEILLFMIENGADTTLL  141 (489)
T ss_pred             HHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCC-----------C-cCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc
Confidence            9999864     7799999999999986 55555           6 999999999986   78999999999996 688


Q ss_pred             CCcchhHHHHHHhcCc---HHHHHHHHHhCCCccccccCCCCcHhHHHhcC
Q 006173          182 GRQGFVLLKFLIDSNL---FDMALALLKCHPMIARADIGETGKILESLSKR  229 (658)
Q Consensus       182 ~~~g~t~Lh~A~~~g~---~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~  229 (658)
                      |..|.||||+|+..++   .++++.|++++.+.....+..|.||||.++.+
T Consensus       142 d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        142 DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKY  192 (489)
T ss_pred             CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHh
Confidence            9999999999999998   99999999997665444456799999988775

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=1.1e-30  Score=291.96  Aligned_cols=379  Identities=16%  Similarity=0.136  Sum_probs=207.9

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ..+..+.+|||.||..+.++.++.++  +++.++... |..|-|||| .|+..|+.+++.+|+.++. . .+.. +..|.
T Consensus       204 a~~~~~~tpl~~a~~~nri~~~eLll--~~gadv~a~-d~~gl~~lh-~a~~~g~~~i~~~l~~~ga-~-~~~~-~vr~~  276 (1143)
T KOG4177|consen  204 ASALNGFTPLHIACKKNRIKVVELLL--KHGADVSAK-DESGLTPLH-VAAFMGHLDIVKLLLQHGA-S-VNVS-TVRGE  276 (1143)
T ss_pred             ccccCCCCchhhhccccccceeeeee--eccCcCCcc-cccCccHHH-HHHhccchhHHHHHHhccc-c-cCcc-ccccc
Confidence            33445566666666666666666555  555555444 566666666 6666666666666666632 2 4444 56666


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC-CCCCCCcchh
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR-EPLDGRQGFV  187 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~g~t  187 (658)
                      ||||.||+.+..+++++|++++.++ ..++.           . +.||+|.|...|+.++++++++.++ .+..+..|.+
T Consensus       277 tplh~AA~~~~~e~~~~ll~~ga~~-~~~~~-----------~-~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t  343 (1143)
T KOG4177|consen  277 TPLHMAARAGQVEVCKLLLQNGADV-LAKAR-----------D-DQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYT  343 (1143)
T ss_pred             CcchhhhccchhhhHhhhhccCccc-ccccc-----------c-ccChhhhhcccchHHHHHHHhhccCCccccCcCCcc
Confidence            6666666666666666666666654 33333           3 6666666666666666666666665 3456666677


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENV  267 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  267 (658)
                      |+|+++..++.+++..+....+. ....++.|.||+|+|+..+..       ..++-++......+......-.+-.  .
T Consensus       344 ~lHlaa~~~~~~~~~~l~~~~~~-~~~a~~k~~~pl~la~~~g~~-------~~v~Lll~~ga~~~~~gk~gvTplh--~  413 (1143)
T KOG4177|consen  344 PLHLAAKEGQVEVAGALLEHGAQ-RRQAEEKGFTPLHLAVKSGRV-------SVVELLLEAGADPNSAGKNGVTPLH--V  413 (1143)
T ss_pred             cccHhhhhhhHHHHHHhhccccc-cCcccccCCcchhhhcccCch-------hHHHhhhhccCCcccCCCCCcceee--e
Confidence            77777776666655555554332 234456677777777766532       2233332222211111100000000  0


Q ss_pred             CCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHH--HHHHHHhhhhhh
Q 006173          268 GGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEI--LRIMCAGAVDIL  345 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~  345 (658)
                      ...+..       ..+++.++...                     ..+...........|......  .+...... ...
T Consensus       414 aa~~~~-------~~~v~l~l~~g---------------------A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~-~~g  464 (1143)
T KOG4177|consen  414 AAHYGN-------PRVVKLLLKRG---------------------ASPNAKAKLGYTPLHVAAKKGRYLQIARLLL-QYG  464 (1143)
T ss_pred             hhhccC-------cceEEEEeccC---------------------CChhhHhhcCCChhhhhhhcccHhhhhhhHh-hcC
Confidence            000000       00000000000                     001111111111222222211  11111111 223


Q ss_pred             cchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcC-------------------------------CCcccccccCCChHH
Q 006173          346 NTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYF-------------------------------PWSLEFKNKDGYDIF  394 (658)
Q Consensus       346 ~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~-------------------------------~~~~~~~d~~G~T~L  394 (658)
                      .+.+..-..|.||||+|++.|+.+++..+++...                               ...++.++..|.|||
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpL  544 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPL  544 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchH
Confidence            3334444556666666666666666655555330                               123566778999999


Q ss_pred             HHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcCcchhhhccC
Q 006173          395 KVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLND  474 (658)
Q Consensus       395 h~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~  474 (658)
                      |+||.+|+.++|++|+++|+    +++++|+.|+||||.||..|+.+++         ++.    ++   .+...+..+.
T Consensus       545 h~A~~~g~v~~VkfLLe~gA----dv~ak~~~G~TPLH~Aa~~G~~~i~---------~LL----lk---~GA~vna~d~  604 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEHGA----DVNAKDKLGYTPLHQAAQQGHNDIA---------ELL----LK---HGASVNAADL  604 (1143)
T ss_pred             HHHHhcCCchHHHHhhhCCc----cccccCCCCCChhhHHHHcChHHHH---------HHH----HH---cCCCCCcccc
Confidence            99999999999999999999    8899999999999999999974322         111    11   2334778999


Q ss_pred             CCCCchhhhHHH
Q 006173          475 KDKTPREVFTKE  486 (658)
Q Consensus       475 ~G~Tp~dl~~~~  486 (658)
                      +|.||+.++...
T Consensus       605 ~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  605 DGFTPLHIAVRL  616 (1143)
T ss_pred             cCcchhHHHHHh
Confidence            999999998653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=265.13  Aligned_cols=333  Identities=7%  Similarity=0.021  Sum_probs=213.6

Q ss_pred             cchhhhhhhhhhHHHHHHHHhC--CHHHHHHHHhhcCc-ccccccccCCCCcHHHHhhhc--CCChHHHHHHHhcCCccc
Q 006173           24 KDEKIIKDIDSYKQVTRYILEN--DWKGLEDYIMSKTP-NALTCIIVDQSSIFEFIVGIP--DVPATLVDKLLSKVPRNC   98 (658)
Q Consensus        24 ~~~~~~~~~~~~~~L~~A~~~G--~~~~v~~ll~~~~~-~~~~~~~~~~g~T~Lh~~Aa~--~g~~~iv~~Ll~~~~~~~   98 (658)
                      .-+.+.++..+.||||.|+..|  +.+.++.|+ +... ...+. .+..+.+||| .++.  .++.++|++|++.+..+ 
T Consensus        67 GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll-~~~~~~~~~~-~~~~~d~~l~-~y~~s~n~~~~~vk~Li~~~~~~-  142 (672)
T PHA02730         67 GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLI-SSYSNASNEL-TSNINDFDLY-SYMSSDNIDLRLLKYLIVDKRIR-  142 (672)
T ss_pred             CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHH-hcCCCCCccc-ccccCCchHH-HHHHhcCCcHHHHHHHHHhcCCC-
Confidence            3345567788999999999977  799999999 4422 22232 3556899999 8888  89999999999743322 


Q ss_pred             ccccc---C-CCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHH-HHH------HHhCcHH
Q 006173           99 LQNFA---R-DEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPV-HMA------AKAGKRD  167 (658)
Q Consensus        99 l~~~~---d-~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpL-h~A------a~~g~~~  167 (658)
                      ++...   + ..|.+|+++|+..++.|+|++|++.|+++....-.    ....+. . +.||+ |++      ..+++.|
T Consensus       143 ~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~----~~~~~~-~-~c~~~l~~~il~~~~~~~n~~e  216 (672)
T PHA02730        143 PSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR----SCMYDS-D-RCKNSLHYYILSHRESESLSKD  216 (672)
T ss_pred             hhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc----cccccC-C-ccchhHHHHHHhhhhhhccCHH
Confidence            22220   1 37899999999999999999999999987311100    000000 2 44443 322      3456677


Q ss_pred             HHHHhccCCCC-CCCCCcchhHHHH--HHhcCcHHHHHHHHH--------------------------------hCCCcc
Q 006173          168 AVRHLLPKTRE-PLDGRQGFVLLKF--LIDSNLFDMALALLK--------------------------------CHPMIA  212 (658)
Q Consensus       168 iv~~Ll~~~~~-~~~~~~g~t~Lh~--A~~~g~~~iv~~LL~--------------------------------~~~~~~  212 (658)
                      ++++|+++|++ +.+|..|.||||+  |...++.|+++.|++                                .+.+. 
T Consensus       217 iv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-  295 (672)
T PHA02730        217 VIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-  295 (672)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-
Confidence            77777777775 6677777777774  444456777777777                                11111 


Q ss_pred             cc--------------------ccCCCCc---------------------HhHHHhcCCCCCCCCCCcchhhhhhccccc
Q 006173          213 RA--------------------DIGETGK---------------------ILESLSKRPKAFASGSRLGSWKRLLYQWIP  251 (658)
Q Consensus       213 ~~--------------------~d~~g~T---------------------pLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~  251 (658)
                      ..                    .+..|.+                     .||.-.+.++.    ...++++.++.+..+
T Consensus       296 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~----v~ieIvelLIs~GAd  371 (672)
T PHA02730        296 EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDM----VSIPILRCMLDNGAT  371 (672)
T ss_pred             HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCc----CcHHHHHHHHHCCCC
Confidence            11                    4455544                     45555554321    345566666655544


Q ss_pred             ccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHH-Hhhhh-hHH
Q 006173          252 IQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIR-DAKII-HEQ  329 (658)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~-~~~  329 (658)
                      ++.. ..          |                                               ...++ ..... +.-
T Consensus       372 IN~k-~~----------G-----------------------------------------------~TpLH~Aa~~nnn~i  393 (672)
T PHA02730        372 MDKT-TD----------N-----------------------------------------------NYPLHDYFVNNNNIV  393 (672)
T ss_pred             CCcC-CC----------C-----------------------------------------------CcHHHHHHHHcCCcc
Confidence            3210 00          0                                               00000 00000 000


Q ss_pred             HHHHHHHHHHhhhhhhcchhhhhcCCCcHHHH---HHHhC---------cHHHHHHHHhhcCCCcccccccCCChHHHHH
Q 006173          330 TLEILRIMCAGAVDILNTHEEAQNVFKKPMFK---AARLG---------IYEIVMGIMNSYFPWSLEFKNKDGYDIFKVA  397 (658)
Q Consensus       330 ~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~---Aa~~G---------~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A  397 (658)
                      ..++++.++..+..  .+.+.+|..|.||||.   |...+         ..+++++|++++ ++ ++.+|..|+||||+|
T Consensus       394 ~~eIvelLIs~Ga~--~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G-AD-INakD~~G~TPLh~A  469 (672)
T PHA02730        394 DVNVVRFIVENNGH--MAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM-DD-IDMIDNENKTLLYYA  469 (672)
T ss_pred             hHHHHHHHHHcCCC--ccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc-cc-hhccCCCCCCHHHHH
Confidence            13455555554310  1234567889999994   33332         235799999998 65 677899999999999


Q ss_pred             HHhCCHhHHHHHhcCCCccccccccccc-CCCchhhhHhhc
Q 006173          398 VEHRREKVFNIIFNFPNIYPFFMANIDE-KRINILHIAAMS  437 (658)
Q Consensus       398 ~~~~~~~iv~~Ll~~~~~~~~~in~~D~-~G~TpLHlAa~~  437 (658)
                      +..++.+++++|++.|+    ++|.+|. .|+||||+|+..
T Consensus       470 a~~~~~eive~LI~~GA----dIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        470 VDVNNIQFARRLLEYGA----SVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             HHhCCHHHHHHHHHCCC----CCCCCCCcCCcCHHHHHHHh
Confidence            99999999999999999    8899997 599999999974

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2e-29  Score=260.77  Aligned_cols=210  Identities=16%  Similarity=0.127  Sum_probs=160.4

Q ss_pred             CcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccC
Q 006173           71 SIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEE  150 (658)
Q Consensus        71 ~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~  150 (658)
                      .+-.+ .|+..|..+-|+.|++.. ...++.. |++|.|+||+||.+++++++++|++++++++.....           
T Consensus        45 ~~~~v-~A~q~G~l~~v~~lve~~-g~~v~~~-D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~-----------  110 (600)
T KOG0509|consen   45 LDDIV-KATQYGELETVKELVESE-GESVNNP-DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV-----------  110 (600)
T ss_pred             hhhhh-hHhhcchHHHHHHHHhhc-CcCCCCC-CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC-----------
Confidence            45666 788888888888888873 3446677 889999999999999999999999999887666545           


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcC
Q 006173          151 KDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKR  229 (658)
Q Consensus       151 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~  229 (658)
                      - |.|||||||++|+..+|++|+++|++ ..+|.+|.+|+|.|+..|+.-++-+||.++ ...+.               
T Consensus       111 l-~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~---------------  173 (600)
T KOG0509|consen  111 L-GSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDL---------------  173 (600)
T ss_pred             C-CCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCC---------------
Confidence            5 88999999999999999999999986 578888888888888888888888888764 22233               


Q ss_pred             CCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhh
Q 006173          230 PKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNN  309 (658)
Q Consensus       230 ~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (658)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (600)
T KOG0509|consen  174 --------------------------------------------------------------------------------  173 (600)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccC
Q 006173          310 LMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKD  389 (658)
Q Consensus       310 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~  389 (658)
                                                               +|++|+||||+||.+|+...+..||+-+ +......|++
T Consensus       174 -----------------------------------------~D~~grTpLmwAaykg~~~~v~~LL~f~-a~~~~~d~~~  211 (600)
T KOG0509|consen  174 -----------------------------------------RDNNGRTPLMWAAYKGFALFVRRLLKFG-ASLLLTDDNH  211 (600)
T ss_pred             -----------------------------------------cCCCCCCHHHHHHHhcccHHHHHHHHhc-cccccccccc
Confidence                                                     4455666666666666666677777777 5544444478


Q ss_pred             CChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhc
Q 006173          390 GYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMS  437 (658)
Q Consensus       390 G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  437 (658)
                      |.||||+|+..|+.+++.+|++.|+    ..+.+|.+|.||+.+|.+.
T Consensus       212 g~TpLHwa~~~gN~~~v~Ll~~g~~----~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  212 GNTPLHWAVVGGNLTAVKLLLEGGA----DLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCchHHHHHhcCCcceEehhhhcCC----cccccccCCCCHHHHHHHh
Confidence            8888888888888888885555555    5567777788888888765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=269.57  Aligned_cols=262  Identities=11%  Similarity=0.129  Sum_probs=202.6

Q ss_pred             hhhHHHHHHH--HhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcC-----CChHHHHHHHhcCCccccccccCC
Q 006173           33 DSYKQVTRYI--LENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPD-----VPATLVDKLLSKVPRNCLQNFARD  105 (658)
Q Consensus        33 ~~~~~L~~A~--~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~-----g~~~iv~~Ll~~~~~~~l~~~~d~  105 (658)
                      +++++++.+.  ..++.+.++.|+  +++..++.+ +..|.|||| .|+..     ++.++++.|+++| .+ ++.+ |.
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll--~~Gadvn~~-d~~g~TpL~-~~~~n~~~~~~~~~iv~~Ll~~G-ad-iN~~-d~  107 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFI--NLGANVNGL-DNEYSTPLC-TILSNIKDYKHMLDIVKILIENG-AD-INKK-NS  107 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHH--HCCCCCCCC-CCCCCChHH-HHHHhHHhHHhHHHHHHHHHHCC-CC-CCCC-CC
Confidence            3556655444  345789999999  556667655 789999999 88764     7799999999994 44 8889 99


Q ss_pred             CCChHHHHHHhcC---CHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCc---HHHHHHhccCCCCC
Q 006173          106 EGSEYMEYAVSTG---KLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGK---RDAVRHLLPKTREP  179 (658)
Q Consensus       106 ~G~TpLh~Aa~~G---~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~---~~iv~~Ll~~~~~~  179 (658)
                      .|+||||+|+..|   +.+++++|++.|+++ +..+.           . |.||||+|+..|+   .+++++|+++|++.
T Consensus       108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-----------~-g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798        108 DGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDK-----------D-GFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             CcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCC-----------C-CCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            9999999999876   789999999999986 55555           6 9999999999998   99999999999863


Q ss_pred             -CC-CCcchhHHHHHHhc----CcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhccccccc
Q 006173          180 -LD-GRQGFVLLKFLIDS----NLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQ  253 (658)
Q Consensus       180 -~~-~~~g~t~Lh~A~~~----g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~  253 (658)
                       .. +..|.||||.++..    ++.++++.|++++.. .+..+..|.++++.....               +++...   
T Consensus       175 n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~~---------------l~~~~~---  235 (489)
T PHA02798        175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLNS---------------LLYDNK---  235 (489)
T ss_pred             ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHHH---------------HHhhcc---
Confidence             33 56799999998764    479999999998644 466677788887621110               000000   


Q ss_pred             ccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHH
Q 006173          254 EEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEI  333 (658)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (658)
                                                                                             ..   ...+
T Consensus       236 -----------------------------------------------------------------------~~---~~~i  241 (489)
T PHA02798        236 -----------------------------------------------------------------------RF---KKNI  241 (489)
T ss_pred             -----------------------------------------------------------------------cc---hHHH
Confidence                                                                                   00   0011


Q ss_pred             HHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCC
Q 006173          334 LRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFP  413 (658)
Q Consensus       334 l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  413 (658)
                      ++.+..     ..+.+.+|..|+||||+|+..|+.++++.|++++ ++ ++.+|..|+||||+|+.+++.++++.|++.+
T Consensus       242 ~~~l~~-----~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-Ad-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        242 LDFIFS-----YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG-GD-INIITELGNTCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             HHHHHh-----cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-Cc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence            112211     2344557888999999999999999999999999 66 6778999999999999999999999999998


Q ss_pred             C
Q 006173          414 N  414 (658)
Q Consensus       414 ~  414 (658)
                      +
T Consensus       315 ~  315 (489)
T PHA02798        315 P  315 (489)
T ss_pred             C
Confidence            7

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=1.1e-27  Score=247.84  Aligned_cols=180  Identities=15%  Similarity=0.168  Sum_probs=151.0

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccC-CCCChH
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFAR-DEGSEY  110 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d-~~G~Tp  110 (658)
                      -+.....+.|+..|+++.|+.++ +..+..++.. |++|-|+|| .||.+++.+++++|++++. + +|.. + .-|.||
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lv-e~~g~~v~~~-D~~g~tlLH-WAAiNNrl~v~r~li~~ga-d-vn~~-gG~l~stP  115 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELV-ESEGESVNNP-DREGVTLLH-WAAINNRLDVARYLISHGA-D-VNAI-GGVLGSTP  115 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHH-hhcCcCCCCC-CcCCcccee-HHHHcCcHHHHHHHHHcCC-C-cccc-CCCCCCCc
Confidence            34567799999999999999999 6656666655 889999999 9999999999999999953 3 5555 4 677899


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHH
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLL  189 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~L  189 (658)
                      ||+||++|++.+|++|+++|++. ..+|.           + |.||||+||..|+.-+|-||+.++++ +.+|.+|+|||
T Consensus       116 LHWAar~G~~~vv~lLlqhGAdp-t~~D~-----------~-G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpL  182 (600)
T KOG0509|consen  116 LHWAARNGHISVVDLLLQHGADP-TLKDK-----------Q-GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPL  182 (600)
T ss_pred             chHHHHcCcHHHHHHHHHcCCCC-ceecC-----------C-CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHH
Confidence            99999999999999999999985 66666           7 99999999999999999999999985 78999999999


Q ss_pred             HHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          190 KFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       190 h~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      |+|+..|+...+..||+-.+......|..|.||||+|+..|
T Consensus       183 mwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  183 MWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGG  223 (600)
T ss_pred             HHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcC
Confidence            99999999887888888765554444455555555555554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.8e-26  Score=243.38  Aligned_cols=370  Identities=10%  Similarity=0.020  Sum_probs=231.6

Q ss_pred             hhhhhHHHHHHHHhCCHH----HHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCC
Q 006173           31 DIDSYKQVTRYILENDWK----GLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDE  106 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~----~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~  106 (658)
                      .+++.||||.-..+.+..    .+..|+  ..|.    ..+-+|.+++|+.|+..|+.|+|++|+++ +.+ ++.+ ++.
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAd-vN~~-~n~  104 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLL--SSVD----YKNINDFDIFEYLCSDNIDIELLKLLISK-GLE-INSI-KNG  104 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHH--hCCC----cCccCCccHHHHHHHhcccHHHHHHHHHc-CCC-cccc-cCC
Confidence            466779999997766633    344444  3333    22667888999889999999999999999 444 8888 888


Q ss_pred             CChHHHHHHh-cCCHHHHHHHHhcCCCCCccccc------------------CC---C----CCCCcccCCCCCcHHHHH
Q 006173          107 GSEYMEYAVS-TGKLNLITTLMGYNEELPNIKVE------------------KK---D----DPNIKDEEKDDLLPVHMA  160 (658)
Q Consensus       107 G~TpLh~Aa~-~G~~~iv~~Ll~~~~~l~~~~~~------------------~~---~----d~~~~~~~~~G~TpLh~A  160 (658)
                      |.||||+|+. .|+.|++++|+++|++.....+.                  .+   +    --|.+|. . |.||||+|
T Consensus       105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-g~t~L~~~  182 (631)
T PHA02792        105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDR-M-GKTVLYYY  182 (631)
T ss_pred             CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCC-C-CCchHHHH
Confidence            9999999975 79999999999999873211110                  00   0    1234555 6 99999999


Q ss_pred             HHhC-------cHHHHHHhccCCCC-CCCCCcchhHHHHHHhcC--cHHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          161 AKAG-------KRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSN--LFDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       161 a~~g-------~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g--~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      +.++       +.|+++.|+++|++ ...|..|.||||+|+...  ..|+++.|++..-.-.     +-...|+--.+..
T Consensus       183 i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~-----~~~~~l~~y~~~~  257 (631)
T PHA02792        183 IITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGN-----ELMNILSNYLRKQ  257 (631)
T ss_pred             HhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhcccccc-----chHhHHHHHHHHH
Confidence            9998       89999999999985 578888999999999998  7899999987521111     1111222111111


Q ss_pred             CCCC-CCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhh
Q 006173          231 KAFA-SGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNN  309 (658)
Q Consensus       231 ~~~~-s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (658)
                      .... ..-...++.+++..+-.-+.                   ...+.+.+.-.                     -...
T Consensus       258 ~~~~~~~id~~iv~~ll~~~~~~~i-------------------~~~~~~~~~~~---------------------~~~~  297 (631)
T PHA02792        258 YRNKNHKIDNYIVDKLLSGHDTFYI-------------------LELCNSLRNNI---------------------IISS  297 (631)
T ss_pred             hccCccCccHHHHHHHHhCCCccch-------------------hhhhhhhhhhh---------------------HHHH
Confidence            0000 00111133333322210000                   00000000000                     0000


Q ss_pred             hhhhch-hhHHHHH-hhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccc
Q 006173          310 LMELAP-SIKSIRD-AKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKN  387 (658)
Q Consensus       310 l~~~~~-~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d  387 (658)
                      +++... .+..+-. -.....-..++++.+++.+....      ...+..++|.||..|+.+++++|+++| ++. +.+|
T Consensus       298 ~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~------r~~~~n~~~~Aa~~gn~eIVelLIs~G-ADI-N~kD  369 (631)
T PHA02792        298 ILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY------RFKHINKYFQKFDNRDPKVVEYILKNG-NVV-VEDD  369 (631)
T ss_pred             HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc------cCCcchHHHHHHHcCCHHHHHHHHHcC-Cch-hhhc
Confidence            000000 0000000 00011123456666666552211      123557899999999999999999999 764 5567


Q ss_pred             cCC--ChHHHHHHHhCCHh---HHHHHhcCCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHh
Q 006173          388 KDG--YDIFKVAVEHRREK---VFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVEN  462 (658)
Q Consensus       388 ~~G--~T~Lh~A~~~~~~~---iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~  462 (658)
                      .+|  .||||+|+.....+   ++++|++.|+    ++|.+|.+|+||||+|+..++.+.+                 +-
T Consensus       370 ~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA----DIN~kD~~G~TPLh~Aa~~~n~eiv-----------------el  428 (631)
T PHA02792        370 DNIINIMPLFPTLSIHESDVLSILKLCKPYID----DINKIDKHGRSILYYCIESHSVSLV-----------------EW  428 (631)
T ss_pred             CCCCChhHHHHHHHhccHhHHHHHHHHHhcCC----ccccccccCcchHHHHHHcCCHHHH-----------------HH
Confidence            664  69999988776654   5788999998    7899999999999999998874211                 11


Q ss_pred             hc-CcchhhhccCCCCCchhhhHH
Q 006173          463 CV-HPTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       463 ~~-~~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      ++ .....+.+|+.|+||+.++..
T Consensus       429 LLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        429 LIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHH
Confidence            11 112367889999999999754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.4e-25  Score=234.33  Aligned_cols=311  Identities=13%  Similarity=0.097  Sum_probs=209.5

Q ss_pred             hhhhhhhHHHHH-HHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhc-CCChHHHHHHHhcCCc----------
Q 006173           29 IKDIDSYKQVTR-YILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIP-DVPATLVDKLLSKVPR----------   96 (658)
Q Consensus        29 ~~~~~~~~~L~~-A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~-~g~~~iv~~Ll~~~~~----------   96 (658)
                      .++..+..++|. |...|+.|.|+.|+  .++..++.+ +..|.|||| +|+. .|+.|+|++|++.|.+          
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI--~~GAdvN~~-~n~~~~~l~-ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~  141 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLI--SKGLEINSI-KNGINIVEK-YATTSNPNVDVFKLLLDKGIPTCSNIQYGYK  141 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHH--HcCCCcccc-cCCCCccee-EeecCCCChHHHHHHHHCCCCcccccccCcc
Confidence            345556667755 56788999999999  567778766 667899999 8865 6999999999999732          


Q ss_pred             ------------------------cccccccCCCCChHHHHHHhcC-------CHHHHHHHHhcCCCCCcccccCCCCCC
Q 006173           97 ------------------------NCLQNFARDEGSEYMEYAVSTG-------KLNLITTLMGYNEELPNIKVEKKDDPN  145 (658)
Q Consensus        97 ------------------------~~l~~~~d~~G~TpLh~Aa~~G-------~~~iv~~Ll~~~~~l~~~~~~~~~d~~  145 (658)
                                              -.++.+ |+.|.||||+|+.++       +.|++++|+++|+++.. .+.      
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~-~d~------  213 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDDYDYDYTTDYD-DRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY-YTY------  213 (631)
T ss_pred             hhhhhcccccccchhhhccccccccccccC-CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc-cCC------
Confidence                                    024567 888999999999999       89999999999998744 444      


Q ss_pred             CcccCCCCCcHHHHHHHhC--cHHHHHHhccCCCCCCCCCcchhHHHHHHhcC------c--HHHHHHHHHhCC--Cccc
Q 006173          146 IKDEEKDDLLPVHMAAKAG--KRDAVRHLLPKTREPLDGRQGFVLLKFLIDSN------L--FDMALALLKCHP--MIAR  213 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~~~g------~--~~iv~~LL~~~~--~~~~  213 (658)
                           . |.||||+|+.+.  ..|++++|++....   ...-...|+.-.+..      .  ..+|..||+...  ++..
T Consensus       214 -----~-g~t~l~~~~~~~~i~~ei~~~L~~~~~~---~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~  284 (631)
T PHA02792        214 -----R-EHTTLYYYVDKCDIKREIFDALFDSNYS---GNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILE  284 (631)
T ss_pred             -----C-CChHHHHHHHcccchHHHHHHHHhcccc---ccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhh
Confidence                 4 999999999999  79999999986331   122244444333222      1  337777776543  1111


Q ss_pred             ----c-----------c-cCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhh
Q 006173          214 ----A-----------D-IGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSV  277 (658)
Q Consensus       214 ----~-----------~-d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (658)
                          .           + +..-+--||.-.+.+     -.....++.++.+......   +.                  
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~-----~v~ieiIK~LId~Ga~~~r---~~------------------  338 (631)
T PHA02792        285 LCNSLRNNIIISSILKRYTDSIQDLLSEYVSYH-----TVYINVIKCMIDEGATLYR---FK------------------  338 (631)
T ss_pred             hhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcC-----CccHHHHHHHHHCCCcccc---CC------------------
Confidence                0           0 001122344444442     1334445555544332110   00                  


Q ss_pred             hHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcC--C
Q 006173          278 TSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNV--F  355 (658)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--g  355 (658)
                                                            ........  -.....++++.+...+    .+.+.+|..  |
T Consensus       339 --------------------------------------~~n~~~~A--a~~gn~eIVelLIs~G----ADIN~kD~~g~~  374 (631)
T PHA02792        339 --------------------------------------HINKYFQK--FDNRDPKVVEYILKNG----NVVVEDDDNIIN  374 (631)
T ss_pred             --------------------------------------cchHHHHH--HHcCCHHHHHHHHHcC----CchhhhcCCCCC
Confidence                                                  00000000  0011224555555544    333445555  4


Q ss_pred             CcHHHHHHHhCcH---HHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhh
Q 006173          356 KKPMFKAARLGIY---EIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILH  432 (658)
Q Consensus       356 ~tpLh~Aa~~G~~---~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  432 (658)
                      .||||.|+.....   ++++.|++++ ++ ++.+|..|+||||+|+..++.+++++|++.|+    ++|.+|..|+||||
T Consensus       375 ~TpLh~A~~n~~~~v~~IlklLIs~G-AD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA----DIN~kD~~G~TpL~  448 (631)
T PHA02792        375 IMPLFPTLSIHESDVLSILKLCKPYI-DD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGA----DINITTKYGSTCIG  448 (631)
T ss_pred             hhHHHHHHHhccHhHHHHHHHHHhcC-Cc-cccccccCcchHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHH
Confidence            6999998876654   4578889998 65 57789999999999999999999999999998    78999999999999


Q ss_pred             hHhh
Q 006173          433 IAAM  436 (658)
Q Consensus       433 lAa~  436 (658)
                      +|+.
T Consensus       449 ~A~~  452 (631)
T PHA02792        449 ICVI  452 (631)
T ss_pred             HHHH
Confidence            9986

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=207.82  Aligned_cols=78  Identities=12%  Similarity=0.068  Sum_probs=52.1

Q ss_pred             CCcHHHHHHH--hCcHHHHHHHHhhcCCCcccccccCCChHHHH-HHHhCCHhHHHHHhcCCCcccccccccccCCCchh
Q 006173          355 FKKPMFKAAR--LGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKV-AVEHRREKVFNIIFNFPNIYPFFMANIDEKRINIL  431 (658)
Q Consensus       355 g~tpLh~Aa~--~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~-A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  431 (658)
                      |.||||.|+.  .++.+++++|++.+ .+ ++.+|.+|+||||. |+..++.+++++|++.|+    +++.+|..|+|||
T Consensus       123 G~TpLh~a~~~~~~~~~iv~~Li~~g-ad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga----di~~~d~~g~tpl  196 (209)
T PHA02859        123 GKNLLHMYMCNFNVRINVIKLLIDSG-VS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGI----DINETNKSGYNCY  196 (209)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcC-CC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCCHH
Confidence            3344444332  24567777777777 54 44567778888874 455677778888887776    6677788888888


Q ss_pred             hhHhhcC
Q 006173          432 HIAAMSV  438 (658)
Q Consensus       432 HlAa~~g  438 (658)
                      |+|...+
T Consensus       197 ~la~~~~  203 (209)
T PHA02859        197 DLIKFRN  203 (209)
T ss_pred             HHHhhhh
Confidence            8877654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1e-22  Score=234.20  Aligned_cols=185  Identities=14%  Similarity=0.054  Sum_probs=136.2

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhhcC-cccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           33 DSYKQVTRYILENDWKGLEDYIMSKT-PNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        33 ~~~~~L~~A~~~G~~~~v~~ll~~~~-~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      ++...++.||..||.+.++.++ +.. +..++.. |..|+||||..|+..++.++++.|++.+.      . +..|.|||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL-~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~-~~~G~T~L   86 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDL-EEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLNLSC------R-GAVGDTLL   86 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHh-ccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHhCCC------C-CCcChHHH
Confidence            5668899999999999999999 442 3334433 78899999966777888999999999843      4 88999999


Q ss_pred             HHHHhcC---CHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCC------
Q 006173          112 EYAVSTG---KLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLD------  181 (658)
Q Consensus       112 h~Aa~~G---~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~------  181 (658)
                      |.|+..+   ..++++.+...+++....  ....++...+... |.||||+||..|+.++|++|+++|++ +.+      
T Consensus        87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~~~~~~~-G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~  163 (743)
T TIGR00870        87 HAISLEYVDAVEAILLHLLAAFRKSGPL--ELANDQYTSEFTP-GITALHLAAHRQNYEIVKLLLERGASVPARACGDFF  163 (743)
T ss_pred             HHHHhccHHHHHHHHHHHhhcccccCch--hhhccccccccCC-CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchh
Confidence            9998722   223344444433221000  0000111111115 99999999999999999999999984 221      


Q ss_pred             --------CCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          182 --------GRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       182 --------~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                              ...|.||||.|+..|+.++++.|++.+ ...+.+|..|+||||+|+..+
T Consensus       164 ~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       164 VKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhh
Confidence                    236899999999999999999999874 456788999999999998874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=6.9e-25  Score=229.40  Aligned_cols=250  Identities=14%  Similarity=0.103  Sum_probs=204.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCc-----------ccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccC
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTP-----------NALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFAR  104 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~-----------~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d  104 (658)
                      +.|..|++.||.+.+..+|+...+           +..+.. |.+|.|+|| .||.+|+.+++++|+++ .+ .++.. |
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~gfTalh-ha~Lng~~~is~llle~-ea-~ldl~-d   79 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSGFTLLH-HAVLNGQNQISKLLLDY-EA-LLDLC-D   79 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-CccchhHHH-HHHhcCchHHHHHHhcc-hh-hhhhh-h
Confidence            568999999999999999932221           112223 668999999 99999999999999998 43 37788 9


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCC
Q 006173          105 DEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGR  183 (658)
Q Consensus       105 ~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~  183 (658)
                      .+|.+|||+||..|+.|++++|+..+.. .+..+.           . |+||||.||..||.+++.+|+.++++ ..+|+
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~-----------e-~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn  146 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNI-----------E-NETPLHLAAQHGHLEVVFYLLKKNADPFIRNN  146 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccC-CCcccc-----------c-CcCccchhhhhcchHHHHHHHhcCCCccccCc
Confidence            9999999999999999999999998844 466666           6 99999999999999999999999997 57899


Q ss_pred             cchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCC
Q 006173          184 QGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPP  263 (658)
Q Consensus       184 ~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~  263 (658)
                      ++.|+|..|++-|..++++.|+..  ++....+.          ..|                                 
T Consensus       147 s~~t~ldlA~qfgr~~Vvq~ll~~--~~~~~~~~----------~~~---------------------------------  181 (854)
T KOG0507|consen  147 SKETVLDLASRFGRAEVVQMLLQK--KFPVQSSL----------RVG---------------------------------  181 (854)
T ss_pred             ccccHHHHHHHhhhhHHHHHHhhh--ccchhhcc----------cCC---------------------------------
Confidence            999999999999999999999987  22111000          000                                 


Q ss_pred             CCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 006173          264 SENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVD  343 (658)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  343 (658)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (854)
T KOG0507|consen  182 --------------------------------------------------------------------------------  181 (854)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCccccccccc
Q 006173          344 ILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANI  423 (658)
Q Consensus       344 ~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~  423 (658)
                          ...++-.+-+|||.|+++|+.++++.|++.+ -+ ++...++| |+||.|+..|+.++|.+|++.|.    ....+
T Consensus       182 ----~~~~~~~~~~plHlaakngh~~~~~~ll~ag-~d-in~~t~~g-talheaalcgk~evvr~ll~~gi----n~h~~  250 (854)
T KOG0507|consen  182 ----DIKRPFPAIYPLHLAAKNGHVECMQALLEAG-FD-INYTTEDG-TALHEAALCGKAEVVRFLLEIGI----NTHIK  250 (854)
T ss_pred             ----CCCCCCCCcCCcchhhhcchHHHHHHHHhcC-CC-cccccccc-hhhhhHhhcCcchhhhHHHhhcc----ccccc
Confidence                0012334669999999999999999999998 44 55555555 99999999999999999999987    66899


Q ss_pred             ccCCCchhhhHhhcCC
Q 006173          424 DEKRINILHIAAMSVP  439 (658)
Q Consensus       424 D~~G~TpLHlAa~~g~  439 (658)
                      |.+|.|+|.+-...-.
T Consensus       251 n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  251 NQHGQTALDIIIDLQE  266 (854)
T ss_pred             cccchHHHHHHHhcch
Confidence            9999999998776544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.6e-24  Score=206.20  Aligned_cols=176  Identities=10%  Similarity=0.020  Sum_probs=148.5

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcC--CChHHHHHHHhcCCccccccccC-CCC
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPD--VPATLVDKLLSKVPRNCLQNFAR-DEG  107 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~--g~~~iv~~Ll~~~~~~~l~~~~d-~~G  107 (658)
                      .....+|||.|+..|+.+.|+.++ +.    .+. .+..|.|||| .|+..  |+.+++++|++.+ .+ ++.+ + ..|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li-~~----~n~-~~~~g~TpLh-~a~~~~~~~~eiv~~Ll~~g-ad-vn~~-~~~~g   87 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWI-KF----VND-CNDLYETPIF-SCLEKDKVNVEILKFLIENG-AD-VNFK-TRDNN   87 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHH-Hh----hhc-cCccCCCHHH-HHHHcCCCCHHHHHHHHHCC-CC-CCcc-CCCCC
Confidence            445789999999999999999999 43    222 3788999999 99875  4899999999994 44 6666 6 589


Q ss_pred             ChHHHHHHhc---CCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHH--hCcHHHHHHhccCCCC-CCC
Q 006173          108 SEYMEYAVST---GKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAK--AGKRDAVRHLLPKTRE-PLD  181 (658)
Q Consensus       108 ~TpLh~Aa~~---G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~--~g~~~iv~~Ll~~~~~-~~~  181 (658)
                      .||||+|+..   ++.+++++|+++|+++ +.++.           . |.||||+|+.  .++.+++++|++++++ ..+
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~-----------~-G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~  154 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDE-----------D-GKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK  154 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCC-----------C-CCCHHHHHHHhccCCHHHHHHHHHcCCCcccc
Confidence            9999998863   5899999999999986 44555           6 9999999986  4689999999999986 678


Q ss_pred             CCcchhHHHH-HHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          182 GRQGFVLLKF-LIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       182 ~~~g~t~Lh~-A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      |..|.||||. |+..++.+++++|++.+. ..+.+|..|.||||+|+.+.
T Consensus       155 d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga-di~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        155 DFDNNNILYSYILFHSDKKIFDFLTSLGI-DINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cCCCCcHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHhhhh
Confidence            9999999995 567889999999999865 45788999999999999874

>PF13962 PGG: Domain of unknown function

Probab=99.91  E-value=4.2e-24  Score=183.13  Aligned_cols=108  Identities=41%  Similarity=0.670  Sum_probs=96.0

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHhhcCCCCCCC----CCCcccCCCc-cchhHHHhhHHHHHHHHHHHHHHHhhcccc
Q 006173          495 EKWMKDTAGSCSVVATLIMTIVFAAAITVPGGSDS----RGMPNFLEEP-SFTIFGISNALALFSSVISVLIFLGILTSR  569 (658)
Q Consensus       495 ~~~~~~~~~~~~vva~Liatv~f~a~~t~Pgg~~~----~g~~~~~~~~-~f~~F~~~~~~a~~~s~~~~~~~~~~~~~~  569 (658)
                      +||+++++++++|||+|||||||||++|||||+||    .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            47899999999999999999999999999999977    5999998887 999999999999999999988877422   


Q ss_pred             ccchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006173          570 FSEEDFLVSLPRKLIIGLITLFFSIACLMVAFAATVHIT  608 (658)
Q Consensus       570 ~~~~~~~~~l~~~~~~~~~~l~~s~~~m~~af~~~~~~v  608 (658)
                         .++.+..++.+.++..++++++.+|++||++|+++|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               345555566788899999999999999999999975

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=4.2e-23  Score=213.38  Aligned_cols=195  Identities=9%  Similarity=-0.053  Sum_probs=160.7

Q ss_pred             HHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCc-----ccccCCCCCCCcccCCCCCcHHHHHH
Q 006173           87 VDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPN-----IKVEKKDDPNIKDEEKDDLLPVHMAA  161 (658)
Q Consensus        87 v~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~-----~~~~~~~d~~~~~~~~~G~TpLh~Aa  161 (658)
                      -++++.++ .+ ++.. +..|     +|+..+..|++++|+.+++++.-     .+..           . ++|+||+|+
T Consensus        65 ~~~~~~~~-~~-i~~~-~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~-----------~-~~~~L~~~~  124 (437)
T PHA02795         65 YDYFRIHR-DN-IDQY-IVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCN-----------S-VQDLLLYYL  124 (437)
T ss_pred             HHHHHHcC-cc-hhhh-hhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccc-----------c-ccHHHHHHH
Confidence            45666663 33 5555 5555     99999999999999999998540     2333           5 999999999


Q ss_pred             H--hCcHHHHHHhccCCCCCCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCc
Q 006173          162 K--AGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRL  239 (658)
Q Consensus       162 ~--~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l  239 (658)
                      .  .|+.++|++|+++|++... .++.||||.|+..++.+++++|++++...    +..+.+|++               
T Consensus       125 ~n~~n~~eiV~~LI~~GADIn~-~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~----~n~~~~~l~---------------  184 (437)
T PHA02795        125 SNAYVEIDIVDFMVDHGAVIYK-IECLNAYFRGICKKESSVVEFILNCGIPD----ENDVKLDLY---------------  184 (437)
T ss_pred             HhcCCCHHHHHHHHHCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHhcCCcc----cccccchhh---------------
Confidence            9  8999999999999997433 45689999999999999999999986432    112223332               


Q ss_pred             chhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHH
Q 006173          240 GSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKS  319 (658)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  319 (658)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (437)
T PHA02795        185 --------------------------------------------------------------------------------  184 (437)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHH
Q 006173          320 IRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVE  399 (658)
Q Consensus       320 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~  399 (658)
                                                      +..|.|++|.|+..++.++++.|++++ ++ ++.+|..|+||||+|+.
T Consensus       185 --------------------------------~~~~~t~l~~a~~~~~~eIve~LIs~G-AD-IN~kD~~G~TpLh~Aa~  230 (437)
T PHA02795        185 --------------------------------KIIQYTRGFLVDEPTVLEIYKLCIPYI-ED-INQLDAGGRTLLYRAIY  230 (437)
T ss_pred             --------------------------------hhhccchhHHHHhcCHHHHHHHHHhCc-CC-cCcCCCCCCCHHHHHHH
Confidence                                            112569999999999999999999999 65 57789999999999999


Q ss_pred             hCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          400 HRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       400 ~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                      .|+.+++++|++.|+    ++|.+|.+|+||||+|+..|+
T Consensus       231 ~g~~eiVelLL~~GA----dIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        231 AGYIDLVSWLLENGA----NVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             cCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCC
Confidence            999999999999998    889999999999999999996

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.6e-22  Score=209.17  Aligned_cols=208  Identities=12%  Similarity=0.082  Sum_probs=163.6

Q ss_pred             HHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccc------cccCCCCChHHHHHH
Q 006173           42 ILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQ------NFARDEGSEYMEYAV  115 (658)
Q Consensus        42 ~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~------~~~d~~G~TpLh~Aa  115 (658)
                      -...-.+++-+++ -.++..++..      +--- +|+..+..|++++|+.++. + ++      .. +..++|+||+|+
T Consensus        56 ~~~~~~~~~~~~~-~~~~~~i~~~------~~~~-~~~~~~~k~~~~~l~s~~~-~-~~~~~~~~~~-~~~~~~~L~~~~  124 (437)
T PHA02795         56 PICDPVDVLYDYF-RIHRDNIDQY------IVDR-LFAYITYKDIISALVSKNY-M-EDIFSIIIKN-CNSVQDLLLYYL  124 (437)
T ss_pred             ccCCHHHHHHHHH-HHcCcchhhh------hhhh-HHhhcchHHHHHHHHhccc-c-cchhhhhhhc-cccccHHHHHHH
Confidence            3344556666655 4555555544      2223 7899999999999999953 3 23      46 788999999999


Q ss_pred             h--cCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC--CC-----CCcch
Q 006173          116 S--TGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP--LD-----GRQGF  186 (658)
Q Consensus       116 ~--~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~-----~~~g~  186 (658)
                      .  .|+.++|++|+++|+++..   .           + +.||||.|+..|+.+++++|+++|++.  ..     +..|.
T Consensus       125 ~n~~n~~eiV~~LI~~GADIn~---~-----------~-~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        125 SNAYVEIDIVDFMVDHGAVIYK---I-----------E-CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             HhcCCCHHHHHHHHHCCCCCCC---C-----------C-CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            9  9999999999999999743   2           4 789999999999999999999999732  11     23467


Q ss_pred             hHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCC
Q 006173          187 VLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSEN  266 (658)
Q Consensus       187 t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  266 (658)
                      +++|.|...++.++++.|+++++++ +                                                     
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADI-N-----------------------------------------------------  215 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDI-N-----------------------------------------------------  215 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCc-C-----------------------------------------------------
Confidence            8888888888888888888774433 1                                                     


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhc
Q 006173          267 VGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILN  346 (658)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  346 (658)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (437)
T PHA02795        216 --------------------------------------------------------------------------------  215 (437)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCC--------HhHHHHHhcCCC
Q 006173          347 THEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRR--------EKVFNIIFNFPN  414 (658)
Q Consensus       347 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~--------~~iv~~Ll~~~~  414 (658)
                         .+|..|.||||+|+..|+.+++++|++++ ++ ++.+|..|+||||+|+.+|+        .+++++|++.|+
T Consensus       216 ---~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-Ad-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        216 ---QLDAGGRTLLYRAIYAGYIDLVSWLLENG-AN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             ---cCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence               14456888999999999999999999998 65 56779999999999999884        689999999987

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=188.99  Aligned_cols=155  Identities=10%  Similarity=0.079  Sum_probs=77.5

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      +..+-..++.++..|-.+--..+. ..    .....+..|+.-+- .|.+.|+.+++..++.. +++.+... |.+|+++
T Consensus        28 ns~q~a~~~~~~~m~~t~p~~~l~-~~----~s~~~~~lge~~~~-~~~~s~nsd~~v~s~~~-~~~~~~~t-~p~g~~~   99 (296)
T KOG0502|consen   28 NSTQIAELFEQVEMGTTEPRCALT-AE----ISALRNALGESLLT-VAVRSGNSDVAVQSAQL-DPDAIDET-DPEGWSA   99 (296)
T ss_pred             ChHHHHHHHHHhhccccchhHHHH-HH----HHHHHHhcCCcccc-hhhhcCCcHHHHHhhcc-CCCCCCCC-Cchhhhh
Confidence            334444555555555554444444 11    11111344555555 55555555555555544 33333344 4555555


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHH
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLK  190 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh  190 (658)
                      +|.|+-.|+...+..++..++......-.             +++|+.+++...+.+++..|.++.- +..|..|.|||.
T Consensus       100 ~~v~ap~~s~~k~sttltN~~rgnevs~~-------------p~s~~slsVhql~L~~~~~~~~n~V-N~~De~GfTpLi  165 (296)
T KOG0502|consen  100 LLVAAPCGSVDKVSTTLTNGARGNEVSLM-------------PWSPLSLSVHQLHLDVVDLLVNNKV-NACDEFGFTPLI  165 (296)
T ss_pred             hhhcCCCCCcceeeeeecccccCCccccc-------------cCChhhHHHHHHHHHHHHHHhhccc-cCccccCchHhH
Confidence            55555555555555555555443333222             5555555555555555544443322 345555555555


Q ss_pred             HHHhcCcHHHHHHHHHh
Q 006173          191 FLIDSNLFDMALALLKC  207 (658)
Q Consensus       191 ~A~~~g~~~iv~~LL~~  207 (658)
                      +|+..|++++|++||+.
T Consensus       166 WAaa~G~i~vV~fLL~~  182 (296)
T KOG0502|consen  166 WAAAKGHIPVVQFLLNS  182 (296)
T ss_pred             HHHhcCchHHHHHHHHc
Confidence            55555555555555555

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=3e-23  Score=186.29  Aligned_cols=151  Identities=17%  Similarity=0.086  Sum_probs=83.0

Q ss_pred             HHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhc
Q 006173           38 VTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVST  117 (658)
Q Consensus        38 L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~  117 (658)
                      +-.+.++|+.+.++... .-+++..... +++|++++| .|+-.|+.+.+..+|..+. . .+.. +-.+++|+.+++..
T Consensus        66 ~~~~~~s~nsd~~v~s~-~~~~~~~~~t-~p~g~~~~~-v~ap~~s~~k~sttltN~~-r-gnev-s~~p~s~~slsVhq  139 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSA-QLDPDAIDET-DPEGWSALL-VAAPCGSVDKVSTTLTNGA-R-GNEV-SLMPWSPLSLSVHQ  139 (296)
T ss_pred             cchhhhcCCcHHHHHhh-ccCCCCCCCC-Cchhhhhhh-hcCCCCCcceeeeeecccc-c-CCcc-ccccCChhhHHHHH
Confidence            44455666666655555 3444433333 455666666 6666666666666665531 1 2233 44566666666666


Q ss_pred             CCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC-CCCCcchhHHHHHHhcC
Q 006173          118 GKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP-LDGRQGFVLLKFLIDSN  196 (658)
Q Consensus       118 G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g  196 (658)
                      .+++.+..+.+.   ..+..++           . |.|||+||+.+|+.++|++|++.|+++ ...++..++|.+|.+.|
T Consensus       140 l~L~~~~~~~~n---~VN~~De-----------~-GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~gg  204 (296)
T KOG0502|consen  140 LHLDVVDLLVNN---KVNACDE-----------F-GFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGG  204 (296)
T ss_pred             HHHHHHHHHhhc---cccCccc-----------c-CchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCC
Confidence            666655554432   2233344           4 666666666666666666666666642 34455555555555555


Q ss_pred             cHHHHHHHHHhCC
Q 006173          197 LFDMALALLKCHP  209 (658)
Q Consensus       197 ~~~iv~~LL~~~~  209 (658)
                      +.+||++||.+.+
T Consensus       205 ytdiV~lLL~r~v  217 (296)
T KOG0502|consen  205 YTDIVELLLTREV  217 (296)
T ss_pred             hHHHHHHHHhcCC
Confidence            5555555555533

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=3.3e-22  Score=229.91  Aligned_cols=229  Identities=13%  Similarity=0.082  Sum_probs=168.5

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHH-HHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYME-YAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIK  147 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh-~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~  147 (658)
                      .++++++ .||..|+.+.|+.+++.....+++.. |..|+|||| .|+.+++.+++++|++.+.     .+.        
T Consensus        16 ~~~~~~l-~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~--------   80 (743)
T TIGR00870        16 DEEKAFL-PAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLNLSC-----RGA--------   80 (743)
T ss_pred             HHHHHHH-HHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHhCCC-----CCC--------
Confidence            5689999 99999999999999988444457788 999999999 8889999999999999886     334        


Q ss_pred             ccCCCCCcHHHHHHHhC---cHHHHHHhccCCCC-----------CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccc
Q 006173          148 DEEKDDLLPVHMAAKAG---KRDAVRHLLPKTRE-----------PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIAR  213 (658)
Q Consensus       148 ~~~~~G~TpLh~Aa~~g---~~~iv~~Ll~~~~~-----------~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~  213 (658)
                         . |+||||.|+..+   ..++++.+......           ......|.||||+|+..|+.++++.|++++.+.. 
T Consensus        81 ---~-G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-  155 (743)
T TIGR00870        81 ---V-GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-  155 (743)
T ss_pred             ---c-ChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-
Confidence               5 999999999832   23455555554421           1234579999999999999999999999865542 


Q ss_pred             cccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCC
Q 006173          214 ADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPS  293 (658)
Q Consensus       214 ~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (658)
                      .++.. ..                           |.                                           
T Consensus       156 ~~~~~-~~---------------------------~~-------------------------------------------  164 (743)
T TIGR00870       156 ARACG-DF---------------------------FV-------------------------------------------  164 (743)
T ss_pred             cCcCC-ch---------------------------hh-------------------------------------------
Confidence            11110 00                           00                                           


Q ss_pred             ccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHH
Q 006173          294 AFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMG  373 (658)
Q Consensus       294 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~  373 (658)
                                                                    .  ....   .....|+||||.|+..|+.++++.
T Consensus       165 ----------------------------------------------~--~~~~---~~~~~g~tpL~~Aa~~~~~~iv~l  193 (743)
T TIGR00870       165 ----------------------------------------------K--SQGV---DSFYHGESPLNAAACLGSPSIVAL  193 (743)
T ss_pred             ----------------------------------------------c--CCCC---CcccccccHHHHHHHhCCHHHHHH
Confidence                                                          0  0000   012357899999999999999999


Q ss_pred             HHhhcCCCcccccccCCChHHHHHHHhC---------CHhHHHHHhcCCCcc---cccccccccCCCchhhhHhhcCCCC
Q 006173          374 IMNSYFPWSLEFKNKDGYDIFKVAVEHR---------REKVFNIIFNFPNIY---PFFMANIDEKRINILHIAAMSVPST  441 (658)
Q Consensus       374 Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~---------~~~iv~~Ll~~~~~~---~~~in~~D~~G~TpLHlAa~~g~~~  441 (658)
                      |++.+ . .++.+|..|+||||+|+..+         ...+.+++++.++..   ....+.+|++|+||||+|++.|+.+
T Consensus       194 Ll~~g-a-din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~  271 (743)
T TIGR00870       194 LSEDP-A-DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIV  271 (743)
T ss_pred             HhcCC-c-chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCcc
Confidence            99887 5 45677999999999999886         234566666664421   1123678999999999999999864

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.87  E-value=1.4e-22  Score=217.43  Aligned_cols=315  Identities=13%  Similarity=0.097  Sum_probs=200.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      ++|-.||..|+.|.++.++  ..+..+. ..|+.|.+||. .|+..||..+|+.|+++ ..+ ++.++|+.++|+|-+||
T Consensus       759 t~LT~acaggh~e~vellv--~rganie-hrdkkgf~plI-maatagh~tvV~~llk~-ha~-veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  759 TNLTSACAGGHREEVELLV--VRGANIE-HRDKKGFVPLI-MAATAGHITVVQDLLKA-HAD-VEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             ccccccccCccHHHHHHHH--Hhccccc-ccccccchhhh-hhcccCchHHHHHHHhh-hhh-hhhhcccccCceEEEec
Confidence            6777788888888877777  3333343 33777778887 77788888888777776 444 55655777778888888


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC---CCCCCcchhHHHHH
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE---PLDGRQGFVLLKFL  192 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~g~t~Lh~A  192 (658)
                      ..|..++|++||..+++- ..++-           . ..|||-+|...|..++|..|+..|++   ....+.|..||.+|
T Consensus       833 sggr~~vvelLl~~gank-ehrnv-----------s-DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmla  899 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANK-EHRNV-----------S-DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLA  899 (2131)
T ss_pred             CCCcchHHHHHHHhhccc-cccch-----------h-hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhh
Confidence            777777777777777664 33333           3 55677777777777777777777652   23455666777777


Q ss_pred             HhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchh
Q 006173          193 IDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLE  272 (658)
Q Consensus       193 ~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (658)
                      ..+||.+.++.||+...++......+.+|+|-+|+-.++.       +.+..++....++++.....             
T Consensus       900 tmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~-------evv~lLLa~~anvehRaktg-------------  959 (2131)
T KOG4369|consen  900 TMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP-------EVVFLLLAAQANVEHRAKTG-------------  959 (2131)
T ss_pred             hhccccHHHHHHhcccchhccccccccccceeeccccCcc-------hHHHHHHHHhhhhhhhcccC-------------
Confidence            7777777666666665555444455566666666655422       22222222211111100000             


Q ss_pred             hhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhh
Q 006173          273 KQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQ  352 (658)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  352 (658)
                          +..++.+.                                       .   ...+++=+.++... .+.+-.. .-
T Consensus       960 ----ltplme~A---------------------------------------s---gGyvdvg~~li~~g-ad~nasP-vp  991 (2131)
T KOG4369|consen  960 ----LTPLMEMA---------------------------------------S---GGYVDVGNLLIAAG-ADTNASP-VP  991 (2131)
T ss_pred             ----Ccccchhh---------------------------------------c---CCccccchhhhhcc-cccccCC-CC
Confidence                00000000                                       0   00000111112222 1111111 11


Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhh
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILH  432 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  432 (658)
                      ....|+|-+++..||...|..|+...  ..+..+|++|.|+|.+|+..|+...+.+|++.++    +++.+|+.-+|+++
T Consensus       992 ~T~dtalti~a~kGh~kfv~~lln~~--atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a----d~d~qdnr~~S~~m 1065 (2131)
T KOG4369|consen  992 NTWDTALTIPANKGHTKFVPKLLNGD--ATVRVPNKKGCTVLWLASAGGALSSCPILVSSVA----DADQQDNRTNSRTM 1065 (2131)
T ss_pred             CcCCccceeecCCCchhhhHHhhCCc--cceecccCCCCcccchhccCCccccchHHhhccc----ChhhhhcccccccH
Confidence            23448999999999999999999876  4567789999999999999999999999999988    77899999999999


Q ss_pred             hHhhcCCCCCC
Q 006173          433 IAAMSVPSTEV  443 (658)
Q Consensus       433 lAa~~g~~~~v  443 (658)
                      -|.++|+.++|
T Consensus      1066 aafRKgh~~iV 1076 (2131)
T KOG4369|consen 1066 AAFRKGHFAIV 1076 (2131)
T ss_pred             HHHHhchhhee
Confidence            99999997444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=3.2e-21  Score=222.90  Aligned_cols=178  Identities=14%  Similarity=0.145  Sum_probs=147.8

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      +..+.++||.||..|+.++++.|++.|+++ +..+.           + |+||||+||..|+.+++++|++++++ +.+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~-----------~-G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d  588 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDS-----------K-GRTPLHIAASKGYEDCVLVLLKHACNVHIRD  588 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-----------C-CCCHHHHHHHcChHHHHHHHHhcCCCCCCcC
Confidence            556788899999999999999999888775 44454           6 99999999999999999999998885 6778


Q ss_pred             CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCC
Q 006173          183 RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHP  262 (658)
Q Consensus       183 ~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~  262 (658)
                      .+|.||||+|+..|+.++++.|++.....                                                   
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---------------------------------------------------  617 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASIS---------------------------------------------------  617 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCccc---------------------------------------------------
Confidence            88999999999999999988887531100                                                   


Q ss_pred             CCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhh
Q 006173          263 PSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAV  342 (658)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  342 (658)
                                                                                                      
T Consensus       618 --------------------------------------------------------------------------------  617 (823)
T PLN03192        618 --------------------------------------------------------------------------------  617 (823)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccc
Q 006173          343 DILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMAN  422 (658)
Q Consensus       343 ~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~  422 (658)
                              ....|.++||.|+..|+.++++.|++++ .+ ++.+|.+|+||||+|+..|+.+++++|++.|+    +++.
T Consensus       618 --------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-ad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA----dv~~  683 (823)
T PLN03192        618 --------DPHAAGDLLCTAAKRNDLTAMKELLKQG-LN-VDSEDHQGATALQVAMAEDHVDMVRLLIMNGA----DVDK  683 (823)
T ss_pred             --------CcccCchHHHHHHHhCCHHHHHHHHHCC-CC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC----CCCC
Confidence                    0112558999999999999999999999 66 56789999999999999999999999999998    7889


Q ss_pred             cccCC-CchhhhHhhcCC
Q 006173          423 IDEKR-INILHIAAMSVP  439 (658)
Q Consensus       423 ~D~~G-~TpLHlAa~~g~  439 (658)
                      +|.+| .||++++.....
T Consensus       684 ~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        684 ANTDDDFSPTELRELLQK  701 (823)
T ss_pred             CCCCCCCCHHHHHHHHHH
Confidence            99988 999998876543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.85  E-value=6.3e-22  Score=212.56  Aligned_cols=284  Identities=12%  Similarity=0.052  Sum_probs=213.1

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      ..+-.|+|- .||..||.|+|++|+.+| .+ +..+ |+.|.+||.+|+-.||..+|+.|+...+++....+.       
T Consensus       754 e~n~~t~LT-~acaggh~e~vellv~rg-an-iehr-dkkgf~plImaatagh~tvV~~llk~ha~veaQsdr-------  822 (2131)
T KOG4369|consen  754 EPNIKTNLT-SACAGGHREEVELLVVRG-AN-IEHR-DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR-------  822 (2131)
T ss_pred             Ccccccccc-ccccCccHHHHHHHHHhc-cc-cccc-ccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc-------
Confidence            445689999 999999999999999994 44 7788 999999999999999999999999999998777777       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCcccccc-CCCCcHhH
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADI-GETGKILE  224 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d-~~g~TpLh  224 (658)
                          . ++|+|-+||..|+.++|++||..+++ +.++-...|||.+|...|+.+++..||..+.++..... +-|.+||+
T Consensus       823 ----t-kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm  897 (2131)
T KOG4369|consen  823 ----T-KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM  897 (2131)
T ss_pred             ----c-cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh
Confidence                7 99999999999999999999999994 78888899999999999999999999999776644433 45999999


Q ss_pred             HHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHH
Q 006173          225 SLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKF  304 (658)
Q Consensus       225 ~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (658)
                      +|+..+..       .....++.....++               ..+|.                    .....      
T Consensus       898 latmngh~-------~at~~ll~~gsdiN---------------aqIeT--------------------NrnTa------  929 (2131)
T KOG4369|consen  898 LATMNGHQ-------AATLSLLQPGSDIN---------------AQIET--------------------NRNTA------  929 (2131)
T ss_pred             hhhhcccc-------HHHHHHhcccchhc---------------ccccc--------------------ccccc------
Confidence            99999743       11111111111000               00000                    00000      


Q ss_pred             HHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccc
Q 006173          305 VLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLE  384 (658)
Q Consensus       305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~  384 (658)
                       +...+....            +    +.+..|+    ..-...+.+-..|.|||+-+|..|.+|+-..||.++ .|...
T Consensus       930 -ltla~fqgr------------~----evv~lLL----a~~anvehRaktgltplme~AsgGyvdvg~~li~~g-ad~na  987 (2131)
T KOG4369|consen  930 -LTLALFQGR------------P----EVVFLLL----AAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAG-ADTNA  987 (2131)
T ss_pred             -eeeccccCc------------c----hHHHHHH----HHhhhhhhhcccCCcccchhhcCCccccchhhhhcc-ccccc
Confidence             000000000            0    1111111    111222335677999999999999999999999999 76422


Q ss_pred             c-cccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          385 F-KNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       385 ~-~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      . .-....|+|-+++..||.+.|..|+...+    .+..++++|+|+|-+|+..|+.
T Consensus       988 sPvp~T~dtalti~a~kGh~kfv~~lln~~a----tv~v~NkkG~T~Lwla~~Gg~l 1040 (2131)
T KOG4369|consen  988 SPVPNTWDTALTIPANKGHTKFVPKLLNGDA----TVRVPNKKGCTVLWLASAGGAL 1040 (2131)
T ss_pred             CCCCCcCCccceeecCCCchhhhHHhhCCcc----ceecccCCCCcccchhccCCcc
Confidence            2 23456799999999999999999999876    6789999999999999999885

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=8.9e-21  Score=219.22  Aligned_cols=173  Identities=14%  Similarity=0.023  Sum_probs=149.8

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      ..++||.||..||.+.++.++  +.+.+.+.. |.+|+|||| +||..|+.++|+.|++++ .+ ++.+ |.+|+||||+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll--~~G~d~n~~-d~~G~TpLh-~Aa~~g~~~~v~~Ll~~g-ad-in~~-d~~G~TpL~~  597 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELL--KAKLDPDIG-DSKGRTPLH-IAASKGYEDCVLVLLKHA-CN-VHIR-DANGNTALWN  597 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHH--HCCCCCCCC-CCCCCCHHH-HHHHcChHHHHHHHHhcC-CC-CCCc-CCCCCCHHHH
Confidence            458899999999999999999  445556555 889999999 999999999999999984 33 7888 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHH
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A  192 (658)
                      |+..||.+++++|++.++..   ...           . |.||||+||..|+.+++++|+++|++ +.+|.+|.||||+|
T Consensus       598 A~~~g~~~iv~~L~~~~~~~---~~~-----------~-~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A  662 (823)
T PLN03192        598 AISAKHHKIFRILYHFASIS---DPH-----------A-AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA  662 (823)
T ss_pred             HHHhCCHHHHHHHHhcCccc---Ccc-----------c-CchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999776542   112           4 88999999999999999999999996 67899999999999


Q ss_pred             HhcCcHHHHHHHHHhCCCccccccCCC-CcHhHHHhcC
Q 006173          193 IDSNLFDMALALLKCHPMIARADIGET-GKILESLSKR  229 (658)
Q Consensus       193 ~~~g~~~iv~~LL~~~~~~~~~~d~~g-~TpLh~Aa~~  229 (658)
                      +..|+.++++.|++++.+ ++..|..| .||++++...
T Consensus       663 ~~~g~~~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        663 MAEDHVDMVRLLIMNGAD-VDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHCCcHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHH
Confidence            999999999999998655 46667776 9999877543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.84  E-value=6.2e-21  Score=200.03  Aligned_cols=167  Identities=15%  Similarity=0.158  Sum_probs=136.7

Q ss_pred             CCCcchhhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccc
Q 006173           21 PKAKDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQ  100 (658)
Q Consensus        21 ~~~~~~~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~  100 (658)
                      .+.+++.+..|+.++|.||.|+.+|+.+.++.++ +. ...+... +..|.+||| +|++.|+.++|+.|+...  +.++
T Consensus        36 ~trsds~n~qd~~gfTalhha~Lng~~~is~lll-e~-ea~ldl~-d~kg~~plh-laaw~g~~e~vkmll~q~--d~~n  109 (854)
T KOG0507|consen   36 TTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLL-DY-EALLDLC-DTKGILPLH-LAAWNGNLEIVKMLLLQT--DILN  109 (854)
T ss_pred             CCCCccccccCccchhHHHHHHhcCchHHHHHHh-cc-hhhhhhh-hccCcceEE-ehhhcCcchHHHHHHhcc--cCCC
Confidence            3446667777889999999999999999999999 43 3333333 678999999 999999999999999984  4588


Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC---
Q 006173          101 NFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR---  177 (658)
Q Consensus       101 ~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~---  177 (658)
                      .. +..|.||||.||..||.+++.+|+.++++- .++|+           . +.|+|-+|++.|+.++|+.|++..=   
T Consensus       110 a~-~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nn-----------s-~~t~ldlA~qfgr~~Vvq~ll~~~~~~~  175 (854)
T KOG0507|consen  110 AV-NIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNN-----------S-KETVLDLASRFGRAEVVQMLLQKKFPVQ  175 (854)
T ss_pred             cc-cccCcCccchhhhhcchHHHHHHHhcCCCc-cccCc-----------c-cccHHHHHHHhhhhHHHHHHhhhccchh
Confidence            88 999999999999999999999999999985 56666           5 9999999999999999999988721   


Q ss_pred             ------CCCCCCcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          178 ------EPLDGRQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       178 ------~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                            ...++..+.+|||.|+++||.++++.|++.
T Consensus       176 ~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a  211 (854)
T KOG0507|consen  176 SSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA  211 (854)
T ss_pred             hcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc
Confidence                  124555566667777777777776666665

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=2.9e-20  Score=179.24  Aligned_cols=180  Identities=19%  Similarity=0.258  Sum_probs=146.4

Q ss_pred             CChHHHHHHHhcC---Cc----cccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCC
Q 006173           82 VPATLVDKLLSKV---PR----NCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDL  154 (658)
Q Consensus        82 g~~~iv~~Ll~~~---~~----~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~  154 (658)
                      -+.+.|+.-|...   .+    -.+|.. |.+|+|+||||+..+|+++|+.||+.+-..+...|.           - |.
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNla-DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr-----------A-GY  303 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLA-DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR-----------A-GY  303 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhh-cCCCCeeeeeeecccchHHHHHHhccCccccccccc-----------c-cc
Confidence            4577777655432   22    247888 999999999999999999999999998877777787           7 99


Q ss_pred             cHHHHHHHh-----CcHHHHHHhccCCCCC-CCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhc
Q 006173          155 LPVHMAAKA-----GKRDAVRHLLPKTREP-LDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSK  228 (658)
Q Consensus       155 TpLh~Aa~~-----g~~~iv~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~  228 (658)
                      ||+|+|+..     .+.++|+.|...|..+ .....|.|+|++|+..|..|+|+.||....+.                 
T Consensus       304 tpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-----------------  366 (452)
T KOG0514|consen  304 TPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADV-----------------  366 (452)
T ss_pred             cHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-----------------
Confidence            999999864     3578899999888854 34567889999999999999998888764332                 


Q ss_pred             CCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHh
Q 006173          229 RPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWN  308 (658)
Q Consensus       229 ~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (658)
                                                                                                      
T Consensus       367 --------------------------------------------------------------------------------  366 (452)
T KOG0514|consen  367 --------------------------------------------------------------------------------  366 (452)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccccccc
Q 006173          309 NLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNK  388 (658)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~  388 (658)
                                                              +.+|.+|.|+|+.||++||.|+++.||... ...+..+|.
T Consensus       367 ----------------------------------------NiQDdDGSTALMCA~EHGhkEivklLLA~p-~cd~sLtD~  405 (452)
T KOG0514|consen  367 ----------------------------------------NIQDDDGSTALMCAAEHGHKEIVKLLLAVP-SCDISLTDV  405 (452)
T ss_pred             ----------------------------------------ccccCCccHHHhhhhhhChHHHHHHHhccC-cccceeecC
Confidence                                                    225666888888888999999999999887 777888899


Q ss_pred             CCChHHHHHHHhCCHhHHHHHhcC
Q 006173          389 DGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       389 ~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                      +|-|+|.+|-..||.+|.-+|+.+
T Consensus       406 DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  406 DGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999998888876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=6.9e-20  Score=186.18  Aligned_cols=85  Identities=15%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             chhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccC
Q 006173          347 THEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEK  426 (658)
Q Consensus       347 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~  426 (658)
                      ..+.++..|.|+||.|+..|..++.++|++.+ . .++.+|.+||||||.|+..|+.+++++|+++|+    +++.....
T Consensus       190 ~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag-~-~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga----~~d~~t~~  263 (527)
T KOG0505|consen  190 ELDARHARGATALHVAAANGYTEVAALLLQAG-Y-SVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA----DMDAKTKM  263 (527)
T ss_pred             cccccccccchHHHHHHhhhHHHHHHHHHHhc-c-CcccccccCCCcccHHHHhhhHhHHHHHHHhhc----ccchhhhc
Confidence            33445556999999999999999999999999 4 467789999999999999999999999999998    78899999


Q ss_pred             CCchhhhHhhc
Q 006173          427 RINILHIAAMS  437 (658)
Q Consensus       427 G~TpLHlAa~~  437 (658)
                      |.||+.+|...
T Consensus       264 g~~p~dv~dee  274 (527)
T KOG0505|consen  264 GETPLDVADEE  274 (527)
T ss_pred             CCCCccchhhh
Confidence            99999999863

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=8.6e-20  Score=176.06  Aligned_cols=194  Identities=13%  Similarity=0.116  Sum_probs=151.7

Q ss_pred             HHHHHHHHh-CCHHHHHHHHhhcCc----cccc---ccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCC
Q 006173           36 KQVTRYILE-NDWKGLEDYIMSKTP----NALT---CIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEG  107 (658)
Q Consensus        36 ~~L~~A~~~-G~~~~v~~ll~~~~~----~~~~---~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G  107 (658)
                      ..+-.|+.. -+.+.|+.+| ....    ..+.   ..-|.+|+|+|| +|+..+++++|+.||+.+- .+++.+ |+-|
T Consensus       227 eW~~~a~~s~a~pe~V~~~l-~~f~als~~lL~yvVNlaDsNGNTALH-YsVSHaNF~VV~~LLDSgv-C~VD~q-NrAG  302 (452)
T KOG0514|consen  227 EWFTNSSTSSSDPEQVEDYL-AYFEALSPPLLEYVVNLADSNGNTALH-YAVSHANFDVVSILLDSGV-CDVDQQ-NRAG  302 (452)
T ss_pred             HHHHhcccCCCCHHHHHHHH-HHHHhcChHHHHHHhhhhcCCCCeeee-eeecccchHHHHHHhccCc-cccccc-cccc
Confidence            334444443 3677888776 3322    1111   123889999999 9999999999999999954 459999 9999


Q ss_pred             ChHHHHHHh-----cCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCC
Q 006173          108 SEYMEYAVS-----TGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLD  181 (658)
Q Consensus       108 ~TpLh~Aa~-----~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~  181 (658)
                      .||.++|+-     ..+.++|..|-.-|. ++.....           . |+|+||+|+.+|+.++|+.||..+++ +.+
T Consensus       303 YtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ-----------~-gQTALMLAVSHGr~d~vk~LLacgAdVNiQ  369 (452)
T KOG0514|consen  303 YTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQ-----------H-GQTALMLAVSHGRVDMVKALLACGADVNIQ  369 (452)
T ss_pred             ccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhh-----------h-cchhhhhhhhcCcHHHHHHHHHccCCCccc
Confidence            999999984     346788888876543 2222222           5 99999999999999999999999996 899


Q ss_pred             CCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccc
Q 006173          182 GRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQE  254 (658)
Q Consensus       182 ~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~  254 (658)
                      |.+|.|+|++|++.||.||++.||..........|.+|.|+|.+|.+.|..        =+-.+||...+...
T Consensus       370 DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~--------eIa~mlYa~~n~~~  434 (452)
T KOG0514|consen  370 DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR--------EIAVMLYAHMNIKR  434 (452)
T ss_pred             cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch--------HHHHHHHHHHHhhh
Confidence            999999999999999999999999987777889999999999999998743        23445565554443

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=8.6e-19  Score=163.23  Aligned_cols=128  Identities=13%  Similarity=0.113  Sum_probs=109.6

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcC----CccccccccCCCCChHHHHHHhcCC----HHHHHHHHhcCCCCCcccc
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKV----PRNCLQNFARDEGSEYMEYAVSTGK----LNLITTLMGYNEELPNIKV  138 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~----~~~~l~~~~d~~G~TpLh~Aa~~G~----~~iv~~Ll~~~~~l~~~~~  138 (658)
                      +..|+|||| .|++.|+.++|+.|+...    ....++.+ |..|+||||+|+..|+    .+++++|++.++++.....
T Consensus        18 ~~~g~t~Lh-~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         18 NSEGENFFH-EAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccCCCCHHH-HHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            678999999 999999999999987542    12347888 9999999999999999    5899999999888643332


Q ss_pred             cCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccC-CCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          139 EKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPK-TRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       139 ~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~-~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                      .           . |+||||+|+..++.+++++|++. +.+ ...|..|.||||+|+..++.++++.|++..
T Consensus        96 ~-----------~-g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         96 L-----------E-GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             C-----------C-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            3           4 99999999999999999999974 664 678999999999999999999999999764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.4e-18  Score=150.61  Aligned_cols=141  Identities=15%  Similarity=0.110  Sum_probs=93.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHh
Q 006173           37 QVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVS  116 (658)
Q Consensus        37 ~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~  116 (658)
                      -+.+|+..|.+..|+.|| +..+..++.+ |.+|.|||| .|+++||.+||+.|+..+ .+ .+.+ ...|+||||-||.
T Consensus        66 l~lwaae~nrl~eV~~lL-~e~an~vNtr-D~D~YTpLH-RAaYn~h~div~~ll~~g-An-~~a~-T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLL-SEKANHVNTR-DEDEYTPLH-RAAYNGHLDIVHELLLSG-AN-KEAK-TNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHH-Hhcccccccc-ccccccHHH-HHHhcCchHHHHHHHHcc-CC-cccc-cccCccchhhhhc
Confidence            366677777777777777 5556666655 777777777 777777777777777663 23 4555 6677777777777


Q ss_pred             cCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCc-HHHHHHhccCCC--CCCCCCcchhHHHHHH
Q 006173          117 TGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGK-RDAVRHLLPKTR--EPLDGRQGFVLLKFLI  193 (658)
Q Consensus       117 ~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~-~~iv~~Ll~~~~--~~~~~~~g~t~Lh~A~  193 (658)
                      ..+.+++-.||..|+++....+.             ..||||+||...+ ...+++|+....  ...++..+.||+..|-
T Consensus       140 WnN~~va~~LLqhgaDVnA~t~g-------------~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNAQTKG-------------LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             ccchhHHHHHHhccCcccccccc-------------cchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            77777777777777776554444             6677777776554 445555555443  2345666677777766


Q ss_pred             hcC
Q 006173          194 DSN  196 (658)
Q Consensus       194 ~~g  196 (658)
                      +.+
T Consensus       207 RT~  209 (228)
T KOG0512|consen  207 RTS  209 (228)
T ss_pred             Hhh
Confidence            554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=4.8e-19  Score=180.11  Aligned_cols=186  Identities=14%  Similarity=0.117  Sum_probs=157.5

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      .--.++.|+..|+.+.++.++  ..+...+ ..+.+|.|+|| -+|...+.+||++|+++ +.+ ++.+ |.+|+||||.
T Consensus        40 ~sa~~l~A~~~~d~~ev~~ll--~~ga~~~-~~n~DglTalh-q~~id~~~e~v~~l~e~-ga~-Vn~~-d~e~wtPlha  112 (527)
T KOG0505|consen   40 DSAVFLEACSRGDLEEVRKLL--NRGASPN-LCNVDGLTALH-QACIDDNLEMVKFLVEN-GAN-VNAQ-DNEGWTPLHA  112 (527)
T ss_pred             chHHHHhccccccHHHHHHHh--ccCCCcc-ccCCccchhHH-HHHhcccHHHHHHHHHh-cCC-cccc-ccccCCcchh
Confidence            345689999999999999999  4444443 44899999999 99999999999999999 444 8899 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCccccc------------------------------------------------CCCCCC
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVE------------------------------------------------KKDDPN  145 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~------------------------------------------------~~~d~~  145 (658)
                      |+..||..++++|+..++++......                                                .|.+++
T Consensus       113 aascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d  192 (527)
T KOG0505|consen  113 AASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELD  192 (527)
T ss_pred             hcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccc
Confidence            99999999999999998875433221                                                134555


Q ss_pred             CcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhH
Q 006173          146 IKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILE  224 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh  224 (658)
                      +.+. . |-|.||+|+.+|..++.++|++.+.+ ..+|.+|+||||.|+.-|+.++++.|+++.. ..+.....|.||+.
T Consensus       193 ~~~~-r-G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga-~~d~~t~~g~~p~d  269 (527)
T KOG0505|consen  193 ARHA-R-GATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA-DMDAKTKMGETPLD  269 (527)
T ss_pred             cccc-c-cchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc-ccchhhhcCCCCcc
Confidence            6666 7 99999999999999999999999984 7899999999999999999999998888754 44778889999999


Q ss_pred             HHhcC
Q 006173          225 SLSKR  229 (658)
Q Consensus       225 ~Aa~~  229 (658)
                      +|..-
T Consensus       270 v~dee  274 (527)
T KOG0505|consen  270 VADEE  274 (527)
T ss_pred             chhhh
Confidence            77664

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=2.8e-18  Score=148.82  Aligned_cols=142  Identities=15%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             HHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCC
Q 006173           73 FEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKD  152 (658)
Q Consensus        73 ~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~  152 (658)
                      .+- .|+..+....|+.||+. .++.++.+ |.+|.||||-|+++||++||+.|+..+++.....+.             
T Consensus        66 l~l-waae~nrl~eV~~lL~e-~an~vNtr-D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~-------------  129 (228)
T KOG0512|consen   66 LLL-WAAEKNRLTEVQRLLSE-KANHVNTR-DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNE-------------  129 (228)
T ss_pred             HHH-HHHhhccHHHHHHHHHh-cccccccc-ccccccHHHHHHhcCchHHHHHHHHccCCccccccc-------------
Confidence            455 79999999999999999 77889999 999999999999999999999999999997555554             


Q ss_pred             CCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCc-HHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          153 DLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNL-FDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       153 G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~-~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      |+||||-||...+.+++-+|+++|++ +.......||||.|+...+ .+.+.+|+....-.+..++..+.||+.+|-+.+
T Consensus       130 GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  130 GWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             CccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999999999999996 6777888999999997765 556666666555556778889999999987774

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.76  E-value=5.3e-18  Score=157.13  Aligned_cols=125  Identities=10%  Similarity=-0.012  Sum_probs=64.7

Q ss_pred             CCCCcHHHHhhhcCCCh----HHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHH---HHHHHhcCCCCCcccccC
Q 006173           68 DQSSIFEFIVGIPDVPA----TLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNL---ITTLMGYNEELPNIKVEK  140 (658)
Q Consensus        68 ~~g~T~Lh~~Aa~~g~~----~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~i---v~~Ll~~~~~l~~~~~~~  140 (658)
                      .++.++|| .||+.|+.    +++++|++. +. .++.. |..|+||||+||..|+.++   +++|++.++++...... 
T Consensus        18 ~~~~~~l~-~a~~~g~~~~l~~~~~~l~~~-g~-~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~-   92 (166)
T PHA02743         18 EDEQNTFL-RICRTGNIYELMEVAPFISGD-GH-LLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG-   92 (166)
T ss_pred             cCCCcHHH-HHHHcCCHHHHHHHHHHHhhc-ch-hhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC-
Confidence            34455555 55555555    333344443 21 24444 5556666666665555432   45555555554221112 


Q ss_pred             CCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcc-CCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          141 KDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLP-KTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       141 ~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~-~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                                . |.||||+|+..|+.+++++|++ .+++ ..++..|.||||+|+..++.+++++|++..
T Consensus        93 ----------~-g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  151 (166)
T PHA02743         93 ----------T-GNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG  151 (166)
T ss_pred             ----------C-CCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                      3 5566666666666666666553 3442 345555666666666666666666555543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=2.3e-18  Score=158.11  Aligned_cols=126  Identities=11%  Similarity=0.011  Sum_probs=72.0

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcC-----CccccccccCCCCChHHHHHHhcCCH---HHHHHHHhcCCCCCcccc
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKV-----PRNCLQNFARDEGSEYMEYAVSTGKL---NLITTLMGYNEELPNIKV  138 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~-----~~~~l~~~~d~~G~TpLh~Aa~~G~~---~iv~~Ll~~~~~l~~~~~  138 (658)
                      |.+|.|||| +||+.|+.  ++.+....     ....+... |.+|.||||+|+..|+.   +++++|++.++++....+
T Consensus        14 d~~g~tpLh-~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         14 DIEGENILH-YLCRNGGV--TDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             CCCCCCHHH-HHHHhCCH--HHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            556666666 66666652  22222110     01123344 66666666666666665   346666666665433222


Q ss_pred             cCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccC-CCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          139 EKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPK-TRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       139 ~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~-~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                      .           . |+||||+|+..|+.+++++|+++ +.+ +.+|..|.||||+|+..|+.++++.|++.+
T Consensus        90 ~-----------~-g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         90 V-----------F-GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             C-----------C-CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            2           3 66666666666666666666653 443 456666666666666666666666666653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.75  E-value=1.1e-17  Score=155.07  Aligned_cols=130  Identities=15%  Similarity=0.057  Sum_probs=104.8

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHh--hcCcccccccccCCCCcHHHHhhhcCCChHH---HHHHHhcCCccccccccC-
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIM--SKTPNALTCIIVDQSSIFEFIVGIPDVPATL---VDKLLSKVPRNCLQNFAR-  104 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~--~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~i---v~~Ll~~~~~~~l~~~~d-  104 (658)
                      +.+..++||.||+.|+.+.+++++.  ..++..++.+ |.+|+|||| +|+..|+.+.   +++|++.+ .+ ++.+ | 
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-d~~g~t~Lh-~Aa~~g~~~~~~~i~~Ll~~G-ad-in~~-d~   91 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-DHHGRQCTH-MVAWYDRANAVMKIELLVNMG-AD-INAR-EL   91 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-CCCCCcHHH-HHHHhCccCHHHHHHHHHHcC-CC-CCCC-CC
Confidence            3445678999999999976655320  2444444433 889999999 9999998665   78999984 33 7777 7 


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHh-cCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173          105 DEGSEYMEYAVSTGKLNLITTLMG-YNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       105 ~~G~TpLh~Aa~~G~~~iv~~Ll~-~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      ..|.||||+|+..|+.+++++|++ .++++ ...+.           . |+||||+|+..|+.+++++|++++++
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~-----------~-g~tpL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINY-----------Q-HETAYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            589999999999999999999996 67775 44555           6 99999999999999999999999984

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=7.2e-18  Score=154.77  Aligned_cols=134  Identities=13%  Similarity=0.008  Sum_probs=104.2

Q ss_pred             hhhhhhhhhHHHHHHHHhCCHHHHHHHH---hhcCcccccccccCCCCcHHHHhhhcCCCh---HHHHHHHhcCCccccc
Q 006173           27 KIIKDIDSYKQVTRYILENDWKGLEDYI---MSKTPNALTCIIVDQSSIFEFIVGIPDVPA---TLVDKLLSKVPRNCLQ  100 (658)
Q Consensus        27 ~~~~~~~~~~~L~~A~~~G~~~~v~~ll---~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~---~iv~~Ll~~~~~~~l~  100 (658)
                      ...++.++.||||.||+.|+.+.+....   .+..+..+ ...|.+|.|||| +|+..|+.   ++++.|++.+ .+ ++
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~-~~~d~~g~t~Lh-~a~~~~~~~~~e~v~~Ll~~g-ad-in   85 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLV-LEYNRHGKQCVH-IVSNPDKADPQEKLKLLMEWG-AD-IN   85 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHH-HHhcCCCCEEEE-eecccCchhHHHHHHHHHHcC-CC-cc
Confidence            3455667999999999999954433221   01111112 234889999999 99999987   4688999984 33 77


Q ss_pred             cccC-CCCChHHHHHHhcCCHHHHHHHHhc-CCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173          101 NFAR-DEGSEYMEYAVSTGKLNLITTLMGY-NEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       101 ~~~d-~~G~TpLh~Aa~~G~~~iv~~Ll~~-~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      .+ | ..|+||||+|+..|+.+++++|+.. +.++ +..+.           . |+||||+|+..|+.+++++|++++++
T Consensus        86 ~~-~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~-----------~-g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         86 GK-ERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNY-----------A-FKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cc-CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77 7 5999999999999999999999974 6664 55555           6 99999999999999999999999874

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=1e-17  Score=155.96  Aligned_cols=128  Identities=12%  Similarity=0.100  Sum_probs=107.6

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhc-----CcccccccccCCCCcHHHHhhhcCCC----hHHHHHHHhcCCcccccc
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSK-----TPNALTCIIVDQSSIFEFIVGIPDVP----ATLVDKLLSKVPRNCLQN  101 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~-----~~~~~~~~~~~~g~T~Lh~~Aa~~g~----~~iv~~Ll~~~~~~~l~~  101 (658)
                      +..+.+|||.|++.|+.+.++.++ ..     .+..++.+ |..|+|||| +|+..|+    .+++++|++. +.+ ++.
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~-~~~~~~~~ga~in~~-d~~g~T~Lh-~A~~~g~~~~~~~ii~~Ll~~-gad-in~   92 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFT-PFIRGDCHAAALNAT-DDAGQMCIH-IAAEKHEAQLAAEIIDHLIEL-GAD-INA   92 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHH-HHhccchhhhhhhcc-CCCCCcHHH-HHHHcCChHHHHHHHHHHHHc-CCC-CCC
Confidence            456889999999999999999986 32     12335444 888999999 9999999    5899999998 444 777


Q ss_pred             ccCC-CCChHHHHHHhcCCHHHHHHHHhc-CCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          102 FARD-EGSEYMEYAVSTGKLNLITTLMGY-NEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       102 ~~d~-~G~TpLh~Aa~~G~~~iv~~Ll~~-~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      + |. +|+||||+|+..|+.+++++|++. ++++ ...+.           . |+||||+|+..|+.+++++|++.++
T Consensus        93 ~-~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~-----------~-g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         93 Q-EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNA-----------D-NKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             C-CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCC-----------C-CCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            7 75 999999999999999999999974 6664 55566           6 9999999999999999999998866

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.72  E-value=4.1e-17  Score=162.82  Aligned_cols=139  Identities=10%  Similarity=0.076  Sum_probs=111.7

Q ss_pred             cCCCCc-HHHHhhhcCCChHHHHHHHhcCCccccccc---cCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCC
Q 006173           67 VDQSSI-FEFIVGIPDVPATLVDKLLSKVPRNCLQNF---ARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKD  142 (658)
Q Consensus        67 ~~~g~T-~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~---~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~  142 (658)
                      |..|.| +|| .|+..|+.++|+.|+++|. + ++.+   .|..|.||||+|+..|+.+++++|++.|+++....+.   
T Consensus        29 d~~~~~~lL~-~A~~~~~~eivk~LL~~GA-d-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~---  102 (300)
T PHA02884         29 NKICIANILY-SSIKFHYTDIIDAILKLGA-D-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE---  102 (300)
T ss_pred             CcCCCCHHHH-HHHHcCCHHHHHHHHHCCC-C-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC---
Confidence            556655 556 8888899999999999953 3 4544   0458999999999999999999999999987443444   


Q ss_pred             CCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCc
Q 006173          143 DPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGK  221 (658)
Q Consensus       143 d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~T  221 (658)
                              . |.||||+|+..|+.+++++|+++|++ ..+|..|.||||+|+..++.+++..+...      ..+..+.+
T Consensus       103 --------~-g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~  167 (300)
T PHA02884        103 --------A-KITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKH  167 (300)
T ss_pred             --------C-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccC
Confidence                    5 99999999999999999999999996 57889999999999998888887555422      24566788


Q ss_pred             HhHHH
Q 006173          222 ILESL  226 (658)
Q Consensus       222 pLh~A  226 (658)
                      |++++
T Consensus       168 ~~~~~  172 (300)
T PHA02884        168 PKKIL  172 (300)
T ss_pred             hhhhh
Confidence            88865

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=6e-16  Score=165.27  Aligned_cols=170  Identities=14%  Similarity=0.079  Sum_probs=126.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcC--------cccccccccCCCCcHHHHhhhc---CCChHHHHHHHhcCCcccccc---
Q 006173           36 KQVTRYILENDWKGLEDYIMSKT--------PNALTCIIVDQSSIFEFIVGIP---DVPATLVDKLLSKVPRNCLQN---  101 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~--------~~~~~~~~~~~g~T~Lh~~Aa~---~g~~~iv~~Ll~~~~~~~l~~---  101 (658)
                      .++..|..+|+.+....++ ...        ...++.+ ...|+|.|| .|.-   .++.++++.|++.. ++.++.   
T Consensus       103 ~~~~~~~~~~~l~~l~~l~-~~~~~~k~r~~~w~~~~R-Ga~GET~Lh-~~lL~~~~~~n~la~~LL~~~-p~lind~~~  178 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLL-KFLRKSKYRLTDWKLNER-GATGETLLH-KALLNLSDGHNELARVLLEIF-PKLINDIYT  178 (782)
T ss_pred             hhhhhccccccHHHHhccc-hhhhhhhhhhhhhccccc-cchhhhHHH-HHHhcCchhHHHHHHHHHHHh-HHHhhhhhh
Confidence            7899999999999888877 222        1234433 567999999 7764   56789999999984 443321   


Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCC----------CcccCCCCCcHHHHHHHhCcHHHHHH
Q 006173          102 FARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPN----------IKDEEKDDLLPVHMAAKAGKRDAVRH  171 (658)
Q Consensus       102 ~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~----------~~~~~~~G~TpLh~Aa~~g~~~iv~~  171 (658)
                      .-.-.|.||||+|+.+-+.++|++|++.|+|+....-..-.-|.          ....-++|+.||-+||-.++.|++++
T Consensus       179 ~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  179 SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            10348999999999999999999999999997543322111111          11111348999999999999999999


Q ss_pred             hccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCC
Q 006173          172 LLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHP  209 (658)
Q Consensus       172 Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~  209 (658)
                      |++++++ +.+|..|+|.||..+..-..++-..+|+.++
T Consensus       259 Ll~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga  297 (782)
T KOG3676|consen  259 LLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGA  297 (782)
T ss_pred             HHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999996 6889999999999988877777777776643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.2e-16  Score=159.45  Aligned_cols=150  Identities=13%  Similarity=0.046  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccc---cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCII---VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~---~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      ..++||.|++.|+.+.++.|+  +++..++.+.   +..|.|||| .|+..|+.+++++|+++| ++ ++...+..|.||
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL--~~GAdiN~~~~~sd~~g~TpLh-~Aa~~~~~eivklLL~~G-AD-VN~~~~~~g~Tp  107 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAIL--KLGADPEAPFPLSENSKTNPLI-YAIDCDNDDAAKLLIRYG-AD-VNRYAEEAKITP  107 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHH--HCCCCccccCcccCCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-cCcccCCCCCCH
Confidence            456788888889999999999  5555565442   458999999 999999999999999995 33 666414579999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHH
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLK  190 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh  190 (658)
                      ||+|+..|+.+++++|++.|+++ +.++.           . |.||||+|+..++.+++..+...    ..+..+.+|++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdi-n~kd~-----------~-G~TpL~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~  170 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADI-NIQTN-----------D-MVTPIELALMICNNFLAFMICDN----EISNFYKHPKK  170 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCCCC-----------C-CCCHHHHHHHhCChhHHHHhcCC----cccccccChhh
Confidence            99999999999999999999886 44555           6 99999999999999988777643    25666788888


Q ss_pred             HHHhcCcHHHHHHHHHhC
Q 006173          191 FLIDSNLFDMALALLKCH  208 (658)
Q Consensus       191 ~A~~~g~~~iv~~LL~~~  208 (658)
                      ++   ++.|+++.|+.+.
T Consensus       171 ~~---~n~ei~~~Lish~  185 (300)
T PHA02884        171 IL---INFDILKILVSHF  185 (300)
T ss_pred             hh---ccHHHHHHHHHHH
Confidence            75   3689999999873

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-17  Score=156.37  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=112.5

Q ss_pred             HHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhc
Q 006173           38 VTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVST  117 (658)
Q Consensus        38 L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~  117 (658)
                      ++.-|+.||.-.|+..| +....+++.- |..|.+||| .||+.||..+|+.|+.+| .. ++.. |...+||||+||..
T Consensus         4 if~wcregna~qvrlwl-d~tehdln~g-ddhgfsplh-waakegh~aivemll~rg-ar-vn~t-nmgddtplhlaaah   77 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWL-DDTEHDLNVG-DDHGFSPLH-WAAKEGHVAIVEMLLSRG-AR-VNST-NMGDDTPLHLAAAH   77 (448)
T ss_pred             hhhhhhcCCeEEEEEEe-cCcccccccc-cccCcchhh-hhhhcccHHHHHHHHhcc-cc-cccc-cCCCCcchhhhhhc
Confidence            45568889888888888 6655556544 778899999 999999999999999984 33 6777 77778999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC-CCCCCCcchhHHHHH
Q 006173          118 GKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR-EPLDGRQGFVLLKFL  192 (658)
Q Consensus       118 G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~g~t~Lh~A  192 (658)
                      ||-++|+.|+++.+++ +..|.           . |.|||||||..|.-.+.+-|+..|+ ....+++|.|||..|
T Consensus        78 ghrdivqkll~~kadv-navne-----------h-gntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   78 GHRDIVQKLLSRKADV-NAVNE-----------H-GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             ccHHHHHHHHHHhccc-chhhc-----------c-CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            9999999999988886 55566           6 9999999999999999999999988 477888899998866

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=1.3e-17  Score=155.87  Aligned_cols=134  Identities=20%  Similarity=0.216  Sum_probs=115.8

Q ss_pred             hhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHH
Q 006173           78 GIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPV  157 (658)
Q Consensus        78 Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpL  157 (658)
                      =|+.|+.--|+..|+. ...+++.. |++|.+|||+||+.||..+|+.|+.+|+.+ +..|.           . ..|||
T Consensus         7 wcregna~qvrlwld~-tehdln~g-ddhgfsplhwaakegh~aivemll~rgarv-n~tnm-----------g-ddtpl   71 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDD-TEHDLNVG-DDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNM-----------G-DDTPL   71 (448)
T ss_pred             hhhcCCeEEEEEEecC-cccccccc-cccCcchhhhhhhcccHHHHHHHHhccccc-ccccC-----------C-CCcch
Confidence            3666776667777777 55568999 999999999999999999999999999987 44555           3 77999


Q ss_pred             HHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHh
Q 006173          158 HMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLS  227 (658)
Q Consensus       158 h~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa  227 (658)
                      |+|+..||.++|+.|++..++ +..+..|+||||||+.-|+..+++.|+.. +..++..|++|.|||..|-
T Consensus        72 hlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   72 HLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhc
Confidence            999999999999999999885 78999999999999999999999999987 5566888999999998664

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=1.2e-14  Score=155.60  Aligned_cols=210  Identities=15%  Similarity=0.089  Sum_probs=153.7

Q ss_pred             CcHHHHhhhcCCChHHHHHHHhcCC-------ccccccccCCCCChHHHHHHh---cCCHHHHHHHHhcCCCCCcccccC
Q 006173           71 SIFEFIVGIPDVPATLVDKLLSKVP-------RNCLQNFARDEGSEYMEYAVS---TGKLNLITTLMGYNEELPNIKVEK  140 (658)
Q Consensus        71 ~T~Lh~~Aa~~g~~~iv~~Ll~~~~-------~~~l~~~~d~~G~TpLh~Aa~---~G~~~iv~~Ll~~~~~l~~~~~~~  140 (658)
                      +.++. .|...|..+..+.|+....       ...++.+ -..|.|.||.|.-   .++-++++.|++.-|.+.+..-. 
T Consensus       102 ~~~~~-~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~-  178 (782)
T KOG3676|consen  102 RDALF-IADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYT-  178 (782)
T ss_pred             hhhhh-hccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhh-
Confidence            36788 8889999888888877642       1245666 6789999999984   56779999999998865443211 


Q ss_pred             CCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCC
Q 006173          141 KDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETG  220 (658)
Q Consensus       141 ~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~  220 (658)
                            .++ ++|+||||+|+.+.+.++|++|++.|++-          |..|. |             +.-...|..+.
T Consensus       179 ------~ee-Y~GqSaLHiAIv~~~~~~V~lLl~~gADV----------~aRa~-G-------------~FF~~~dqk~~  227 (782)
T KOG3676|consen  179 ------SEE-YYGQSALHIAIVNRDAELVRLLLAAGADV----------HARAC-G-------------AFFCPDDQKAS  227 (782)
T ss_pred             ------hHh-hcCcchHHHHHHhccHHHHHHHHHcCCch----------hhHhh-c-------------cccCccccccc
Confidence                  222 55999999999999999999999998852          11111 1             00000110000


Q ss_pred             cHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHH
Q 006173          221 KILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQ  300 (658)
Q Consensus       221 TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (658)
                      .       +                                      ..+|+.                           
T Consensus       228 r-------k--------------------------------------~T~Y~G---------------------------  235 (782)
T KOG3676|consen  228 R-------K--------------------------------------STNYTG---------------------------  235 (782)
T ss_pred             c-------c--------------------------------------ccCCcc---------------------------
Confidence            0       0                                      000100                           


Q ss_pred             HHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCC
Q 006173          301 KLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFP  380 (658)
Q Consensus       301 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~  380 (658)
                                                                        .-.-|+.||-+||..++.|++++|++++ +
T Consensus       236 --------------------------------------------------~~YfGEyPLSfAAC~nq~eivrlLl~~g-A  264 (782)
T KOG3676|consen  236 --------------------------------------------------YFYFGEYPLSFAACTNQPEIVRLLLAHG-A  264 (782)
T ss_pred             --------------------------------------------------eeeeccCchHHHHHcCCHHHHHHHHhcC-C
Confidence                                                              1123889999999999999999999988 5


Q ss_pred             CcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          381 WSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       381 ~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      | ++.+|..|+|+||..|.+-..++.+++++.|+.  .+...+++.|-|||-+||+.|+.
T Consensus       265 d-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  265 D-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             C-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhH
Confidence            5 677899999999999999999999999999984  35788999999999999999984

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.57  E-value=3e-14  Score=125.27  Aligned_cols=122  Identities=18%  Similarity=0.288  Sum_probs=103.3

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +.+|.|||| .|+..|+.++++.|++.+. . .+.. +..|.||||+|+..++.+++++|++.++.+ ...+.       
T Consensus         4 ~~~g~t~l~-~a~~~~~~~~i~~li~~~~-~-~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~-------   71 (126)
T cd00204           4 DEDGRTPLH-LAASNGHLEVVKLLLENGA-D-VNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDK-------   71 (126)
T ss_pred             CcCCCCHHH-HHHHcCcHHHHHHHHHcCC-C-CCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-------
Confidence            567899999 9999999999999999853 2 3566 889999999999999999999999988754 33344       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCC-CCCCCCcchhHHHHHHhcCcHHHHHHHH
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR-EPLDGRQGFVLLKFLIDSNLFDMALALL  205 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~g~t~Lh~A~~~g~~~iv~~LL  205 (658)
                          . |.||+|+|+..++.+++++|++++. ....+..|.||++.|+..++.++++.|+
T Consensus        72 ----~-~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          72 ----D-GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ----C-CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                5 8999999999999999999999876 3567788999999999999999888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=1.9e-14  Score=118.66  Aligned_cols=84  Identities=20%  Similarity=0.344  Sum_probs=53.8

Q ss_pred             HHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCC
Q 006173           74 EFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDD  153 (658)
Q Consensus        74 Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G  153 (658)
                      || .||+.|+.++++.|++.+ .+ +    +. |+||||+||..|+.+++++|++.++++ +.++.           . |
T Consensus         1 L~-~A~~~~~~~~~~~ll~~~-~~-~----~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-----------~-g   59 (89)
T PF12796_consen    1 LH-IAAQNGNLEILKFLLEKG-AD-I----NL-GNTALHYAAENGNLEIVKLLLENGADI-NSQDK-----------N-G   59 (89)
T ss_dssp             HH-HHHHTTTHHHHHHHHHTT-ST-T----TS-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BST-----------T-S
T ss_pred             CH-HHHHcCCHHHHHHHHHCc-CC-C----CC-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCC-----------C-C
Confidence            56 777777777777777752 22 1    22 667777777777777777777766654 33333           4 7


Q ss_pred             CcHHHHHHHhCcHHHHHHhccCCCC
Q 006173          154 LLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       154 ~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      +||||+|+..|+.+++++|++++++
T Consensus        60 ~t~L~~A~~~~~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   60 NTALHYAAENGNLEIVKLLLEHGAD   84 (89)
T ss_dssp             SBHHHHHHHTTHHHHHHHHHHTTT-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777777777653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.52  E-value=5.6e-14  Score=115.85  Aligned_cols=85  Identities=13%  Similarity=0.191  Sum_probs=73.7

Q ss_pred             HHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhc
Q 006173           38 VTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVST  117 (658)
Q Consensus        38 L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~  117 (658)
                      ||.||..|+.+.++.++ +. ...++    . |+|||| +||..|+.+++++|++.+ .+ ++.+ |.+|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll-~~-~~~~~----~-~~~~l~-~A~~~~~~~~~~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLL-EK-GADIN----L-GNTALH-YAAENGNLEIVKLLLENG-AD-INSQ-DKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHH-HT-TSTTT----S-SSBHHH-HHHHTTTHHHHHHHHHTT-TC-TT-B-STTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHH-HC-cCCCC----C-CCCHHH-HHHHcCCHHHHHHHHHhc-cc-cccc-CCCCCCHHHHHHHc
Confidence            79999999999999999 53 33332    2 899999 999999999999999984 34 7888 99999999999999


Q ss_pred             CCHHHHHHHHhcCCCC
Q 006173          118 GKLNLITTLMGYNEEL  133 (658)
Q Consensus       118 G~~~iv~~Ll~~~~~l  133 (658)
                      |+.+++++|++.|+++
T Consensus        70 ~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADV   85 (89)
T ss_dssp             THHHHHHHHHHTTT-T
T ss_pred             CCHHHHHHHHHcCCCC
Confidence            9999999999998876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=3.9e-13  Score=118.17  Aligned_cols=123  Identities=17%  Similarity=0.229  Sum_probs=104.3

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      +.++.+|||.|+..|+.+.++.++ +.. .... ..+..|.|||| .|+..++.++++.|++.+.  .++.. |..|.||
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li-~~~-~~~~-~~~~~g~~~l~-~a~~~~~~~~~~~ll~~~~--~~~~~-~~~~~~~   76 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLL-ENG-ADVN-AKDNDGRTPLH-LAAKNGHLEIVKLLLEKGA--DVNAR-DKDGNTP   76 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHH-HcC-CCCC-ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCC--Ccccc-CCCCCCH
Confidence            356789999999999999999999 443 3223 33778999999 9999999999999999953  36677 8899999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLL  173 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll  173 (658)
                      +|+|+..++.+++++|++++.+. ...+.           . |.||+++|...++.+++++|+
T Consensus        77 l~~a~~~~~~~~~~~L~~~~~~~-~~~~~-----------~-~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHGADV-NARDK-----------D-GRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCC-cccCC-----------C-CCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999988664 33444           5 999999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.40  E-value=9.4e-13  Score=102.34  Aligned_cols=94  Identities=13%  Similarity=0.090  Sum_probs=79.4

Q ss_pred             HHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHh
Q 006173           37 QVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVS  116 (658)
Q Consensus        37 ~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~  116 (658)
                      ...+++++|+++.|+... .+ +..++..  -.|+|||| +|+-.|+.+++++|+.. +.+ ++.+ |++|-|||--|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v-~~-g~nVn~~--~ggR~plh-yAAD~GQl~ilefli~i-GA~-i~~k-DKygITPLLsAvw   76 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSV-NE-GLNVNEI--YGGRTPLH-YAADYGQLSILEFLISI-GAN-IQDK-DKYGITPLLSAVW   76 (117)
T ss_pred             hHhhhhccCcHHHHHHHH-Hc-cccHHHH--hCCcccch-HhhhcchHHHHHHHHHh-ccc-cCCc-cccCCcHHHHHHH
Confidence            467899999999999998 33 3344433  37899999 99999999999999999 444 8888 9999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccccc
Q 006173          117 TGKLNLITTLMGYNEELPNIKVE  139 (658)
Q Consensus       117 ~G~~~iv~~Ll~~~~~l~~~~~~  139 (658)
                      .||.++|++|++.|++- ..+.-
T Consensus        77 EGH~~cVklLL~~GAdr-t~~~P   98 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADR-TIHAP   98 (117)
T ss_pred             HhhHHHHHHHHHcCccc-ceeCC
Confidence            99999999999999985 33443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.37  E-value=7.1e-12  Score=122.75  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=114.9

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCC-----HHHHHHHHhcCC--CCCccccc
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGK-----LNLITTLMGYNE--ELPNIKVE  139 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~-----~~iv~~Ll~~~~--~l~~~~~~  139 (658)
                      +..+.+++| .|+..+..+++++|+.. +.+ ++.+ |..|.||||+|+..|+     .++++.|++.++  +.....+.
T Consensus        70 ~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~~-~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          70 DLDGRLPLH-SAASKGDDKIVKLLLAS-GAD-VNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             CccccCHHH-HHHHcCcHHHHHHHHHc-CCC-cccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            566899999 99999999999999998 444 5788 9999999999999999     999999999999  66677677


Q ss_pred             CCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          140 KKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       140 ~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                                 . |.||||+|+..|+.+++++|++.+++ ...+..|.|+++.|+..++.++++.+++..
T Consensus       146 -----------~-g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 -----------D-GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -----------C-CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                       7 99999999999999999999999995 567899999999999999999999999874

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.36  E-value=4.9e-13  Score=98.92  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=33.3

Q ss_pred             HHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhH
Q 006173          374 IMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIA  434 (658)
Q Consensus       374 Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlA  434 (658)
                      ||+++ +..++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|++|+||||+|
T Consensus         1 LL~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~----d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA----DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC----CCCCCcCCCCCHHHhC
Confidence            56777 78888999999999999999999999999998887    8899999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.34  E-value=4.8e-12  Score=119.03  Aligned_cols=124  Identities=14%  Similarity=0.059  Sum_probs=105.0

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      ...||+.++..||.+....|| .. ...++.+ |++|.|+|. .|+..|+.++|+.||+.+ .+ +|...+..+.||||+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LL-s~-vr~vn~~-D~sGMs~La-hAaykGnl~~v~lll~~g-aD-vN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALL-ST-VRQVNQR-DPSGMSVLA-HAAYKGNLTLVELLLELG-AD-VNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHH-HH-hhhhhcc-CCCcccHHH-HHHhcCcHHHHHHHHHhC-CC-cCcccccccccHHHH
Confidence            447899999999999999999 33 3445544 999999999 999999999999999994 44 443338889999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      ||-+|+.++.++|++.|+.. ...|.           - |+|+-.+||.-|+.++|..+-++-
T Consensus        86 AALSGn~dvcrllldaGa~~-~~vNs-----------v-grTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARM-YLVNS-----------V-GRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             HHHcCCchHHHHHHhccCcc-ccccc-----------h-hhhHHHHHHHhcchHHHHHHhccc
Confidence            99999999999999999985 44455           5 999999999999999998875543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.32  E-value=5e-12  Score=98.33  Aligned_cols=99  Identities=19%  Similarity=0.304  Sum_probs=78.7

Q ss_pred             hhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcH
Q 006173           77 VGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLP  156 (658)
Q Consensus        77 ~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~Tp  156 (658)
                      .++.+|..+-|+..+..+ .+ ++..  -.|+||||+||-.|+.+++++|+..|+++ +.+++           + |.||
T Consensus         8 W~vkNG~~DeVk~~v~~g-~n-Vn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDK-----------y-gITP   70 (117)
T KOG4214|consen    8 WNVKNGEIDEVKQSVNEG-LN-VNEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDK-----------Y-GITP   70 (117)
T ss_pred             hhhccCcHHHHHHHHHcc-cc-HHHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccc-----------c-CCcH
Confidence            678889999998888774 22 4333  36789999999999999999999999886 55555           5 9999


Q ss_pred             HHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHH
Q 006173          157 VHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       157 Lh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A  192 (658)
                      |.-|+..||.++|++|+++|++ .....+|.+.+..+
T Consensus        71 LLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999999985 56677777666543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=3.5e-12  Score=129.04  Aligned_cols=118  Identities=12%  Similarity=0.039  Sum_probs=97.7

Q ss_pred             HHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhc
Q 006173           38 VTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVST  117 (658)
Q Consensus        38 L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~  117 (658)
                      |..|+..|.++.|+.++  ..-.+. ++-+..|-|+|| -|+-.||.+||++||+. +.+ +|.. |.+||||||+||..
T Consensus       554 LLDaaLeGEldlVq~~i--~ev~Dp-SqpNdEGITaLH-NAiCaghyeIVkFLi~~-gan-VNa~-DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRII--YEVTDP-SQPNDEGITALH-NAICAGHYEIVKFLIEF-GAN-VNAA-DSDGWTPLHCAASC  626 (752)
T ss_pred             HHhhhhcchHHHHHHHH--HhhcCC-CCCCccchhHHh-hhhhcchhHHHHHHHhc-CCc-ccCc-cCCCCchhhhhhhc
Confidence            78899999999999998  222222 344789999999 99999999999999999 445 8999 99999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHH--HhCcHHHHHHhcc
Q 006173          118 GKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAA--KAGKRDAVRHLLP  174 (658)
Q Consensus       118 G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa--~~g~~~iv~~Ll~  174 (658)
                      +++-+++.|++.|+.+....-.           + ++||..-+-  +.|..++.+||..
T Consensus       627 Nnv~~ckqLVe~GaavfAsTlS-----------D-meTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVFASTLS-----------D-METAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CchHHHHHHHhccceEEeeecc-----------c-ccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999987666666           6 888875442  3566777777754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.30  E-value=1e-11  Score=121.64  Aligned_cols=126  Identities=14%  Similarity=0.135  Sum_probs=109.4

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCC-----hHHHHHHHhcCCc-cccccccCCC
Q 006173           33 DSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVP-----ATLVDKLLSKVPR-NCLQNFARDE  106 (658)
Q Consensus        33 ~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~-----~~iv~~Ll~~~~~-~~l~~~~d~~  106 (658)
                      ...++++.++..|+.+.++.++ .. +...+.+ +.+|.|||| .|+..|+     .++++.|++.+.. +..+.+ |..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~-~~~g~t~l~-~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~-~~~  146 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLL-AS-GADVNAK-DADGDTPLH-LAALNGNPPEGNIEVAKLLLEAGADLDVNNLR-DED  146 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHH-Hc-CCCcccc-cCCCCcHHH-HHHhcCCcccchHHHHHHHHHcCCCCCCcccc-CCC
Confidence            3678999999999999998888 43 3445444 999999999 9999999     9999999999551 457778 999


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173          107 GSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus       107 G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      |+||||+|+..|+.+++++|++.+++. ...+.           . |.||+++|+..|+.++++.++..+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~-----------~-g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADP-NSRNS-----------Y-GVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCC-ccccc-----------C-CCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999998886 44444           5 999999999999999999999975

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.26  E-value=9.6e-12  Score=91.48  Aligned_cols=54  Identities=31%  Similarity=0.551  Sum_probs=44.1

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 006173          107 GSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLL  173 (658)
Q Consensus       107 G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll  173 (658)
                      |+||||+||+.|+.+++++|++++.++ +..+.           + |+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~-----------~-g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDE-----------D-GRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-T-----------T-S--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCC-----------C-CCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999886 44466           6 999999999999999999986

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.25  E-value=1.1e-11  Score=91.22  Aligned_cols=54  Identities=15%  Similarity=0.270  Sum_probs=44.3

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHH
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLM  127 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll  127 (658)
                      |+|||| .||+.|+.+++++|++. +.+ ++.+ |.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh-~A~~~g~~~~~~~Ll~~-~~d-in~~-d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLH-WAARSGNLEIVKLLLEH-GAD-INAQ-DEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHH-HHHHTT-HHHHHHHHHT-TSG-TT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHH-HHHHhCCHHHHHHHHHC-CCC-CCCC-CCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999 99999999999999999 444 8888 999999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.25  E-value=3.3e-11  Score=113.44  Aligned_cols=120  Identities=18%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             CcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccC
Q 006173           71 SIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEE  150 (658)
Q Consensus        71 ~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~  150 (658)
                      ..||. -++..|.++-...||+. .. .++.. |..|.|||..|++.|+.++|++|++.|++++.....           
T Consensus        13 ~~~Ll-e~i~Kndt~~a~~LLs~-vr-~vn~~-D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg-----------   77 (396)
T KOG1710|consen   13 KSPLL-EAIDKNDTEAALALLST-VR-QVNQR-DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHG-----------   77 (396)
T ss_pred             hhHHH-HHHccCcHHHHHHHHHH-hh-hhhcc-CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccc-----------
Confidence            57899 99999999999999987 33 37788 999999999999999999999999999998776666           


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHH
Q 006173          151 KDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLK  206 (658)
Q Consensus       151 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~  206 (658)
                      . +.||||.||.+|+.++.++|++.|+. ...+.-|+|+-..|+.-|+.++|..+=.
T Consensus        78 ~-~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   78 T-LYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             c-cccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            7 99999999999999999999999995 5788999999999999999998876543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.21  E-value=1.2e-11  Score=91.47  Aligned_cols=56  Identities=20%  Similarity=0.267  Sum_probs=29.1

Q ss_pred             HHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHH
Q 006173           90 LLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMA  160 (658)
Q Consensus        90 Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~A  160 (658)
                      ||+++ +.+++.+ |.+|.||||+||..|+.++|++|++.+.++ +.++.           . |+||||+|
T Consensus         1 LL~~~-~~~~n~~-d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~-----------~-G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHG-PADVNAQ-DKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDK-----------D-GQTPLHYA   56 (56)
T ss_dssp             ------T--TT----TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---T-----------T-S--HHHH-
T ss_pred             CCccC-cCCCcCc-CCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcC-----------C-CCCHHHhC
Confidence            56664 4457888 888999999999999999999998777775 66666           6 89999887

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.16  E-value=1.2e-10  Score=131.36  Aligned_cols=104  Identities=14%  Similarity=0.100  Sum_probs=84.2

Q ss_pred             cHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCC
Q 006173           72 IFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEK  151 (658)
Q Consensus        72 T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~  151 (658)
                      +.|| .|+..|+.+.|+.|++.+ .+ ++.+ |..|+||||+||..|+.+++++|++.|+++ +..+.           .
T Consensus        84 ~~L~-~aa~~G~~~~vk~LL~~G-ad-in~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~-----------~  147 (664)
T PTZ00322         84 VELC-QLAASGDAVGARILLTGG-AD-PNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDK-----------D  147 (664)
T ss_pred             HHHH-HHHHcCCHHHHHHHHHCC-CC-CCCc-CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-----------C
Confidence            3588 899999999999999984 33 7788 999999999999999999999999998886 45555           6


Q ss_pred             CCCcHHHHHHHhCcHHHHHHhccC-------CCC-CCCCCcchhHHHHH
Q 006173          152 DDLLPVHMAAKAGKRDAVRHLLPK-------TRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       152 ~G~TpLh~Aa~~g~~~iv~~Ll~~-------~~~-~~~~~~g~t~Lh~A  192 (658)
                       |.||||+|+..|+.+++++|+++       +++ +..+..|.+++..+
T Consensus       148 -G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        148 -GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             -CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence             99999999999999999999988       442 34555566655433

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=7.7e-11  Score=119.48  Aligned_cols=115  Identities=14%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             hhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcH
Q 006173           77 VGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLP  156 (658)
Q Consensus        77 ~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~Tp  156 (658)
                      -|+-.|..|+|+..+....  +.... |++|.||||-|+..||.+||++|++.|+++ +..+.           + ||||
T Consensus       556 DaaLeGEldlVq~~i~ev~--DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DS-----------d-GWTP  619 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVT--DPSQP-NDEGITALHNAICAGHYEIVKFLIEFGANV-NAADS-----------D-GWTP  619 (752)
T ss_pred             hhhhcchHHHHHHHHHhhc--CCCCC-CccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccC-----------C-CCch
Confidence            6899999999999998753  24555 999999999999999999999999999997 55566           6 9999


Q ss_pred             HHHHHHhCcHHHHHHhccCCCC--CCCCCcchhHHHHH--HhcCcHHHHHHHHHh
Q 006173          157 VHMAAKAGKRDAVRHLLPKTRE--PLDGRQGFVLLKFL--IDSNLFDMALALLKC  207 (658)
Q Consensus       157 Lh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~g~t~Lh~A--~~~g~~~iv~~LL~~  207 (658)
                      ||+||..++..+++.|++.|+-  ...-+++.|+..-|  .+.|+.++.++|..-
T Consensus       620 LHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  620 LHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999999999999999983  33445677877766  466788888888653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.08  E-value=3.9e-10  Score=127.12  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=88.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      .+|+.|+..|+.+.++.|+ + .+..++.+ |.+|+|||| +||..|+.++|++|++.+ .+ ++.+ |..|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL-~-~Gadin~~-d~~G~TpLh-~Aa~~g~~eiv~~LL~~G-ad-vn~~-d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILL-T-GGADPNCR-DYDGRTPLH-IACANGHVQVVRVLLEFG-AD-PTLL-DKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHH-H-CCCCCCCc-CCCCCcHHH-HHHHCCCHHHHHHHHHCC-CC-CCCC-CCCCCCHHHHHH
Confidence            4699999999999999999 4 44556655 889999999 999999999999999994 44 7888 999999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHH
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAA  161 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa  161 (658)
                      ..|+.+++++|++.+...    ...+++++.++. . |.+|+..+.
T Consensus       157 ~~g~~~iv~~Ll~~~~~~----~~~ga~~~~~~~-~-g~~~~~~~~  196 (664)
T PTZ00322        157 ENGFREVVQLLSRHSQCH----FELGANAKPDSF-T-GKPPSLEDS  196 (664)
T ss_pred             HCCcHHHHHHHHhCCCcc----cccCCCCCcccc-C-CCCccchhh
Confidence            999999999999883321    111222333332 4 777776554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.94  E-value=2.1e-09  Score=109.88  Aligned_cols=122  Identities=16%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             HHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHh
Q 006173           37 QVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVS  116 (658)
Q Consensus        37 ~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~  116 (658)
                      .+..|+..+|+-.+++..  .++.++-.+ +++..|.|| +|+..|+-|+|+++|++++++.++.. |..|.|+||-||.
T Consensus       869 eil~av~~~D~~klqE~h--~~gg~ll~~-~~~~~sllh-~a~~tg~~eivkyildh~p~elld~~-de~get~lhkaa~  943 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETH--LNGGSLLIQ-GPDHCSLLH-YAAKTGNGEIVKYILDHGPSELLDMA-DETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHHhccHHHHHHHH--hcCCceEee-CcchhhHHH-HHHhcCChHHHHHHHhcCCHHHHHHH-hhhhhHHHHHHHH
Confidence            389999999998888877  444444334 788899999 99999999999999999998989999 9999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173          117 TGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus       117 ~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      .++-.++++|++.|+.+ ...+.           + |.||-.-|-..|..++..||-++.
T Consensus       944 ~~~r~vc~~lvdagasl-~ktd~-----------k-g~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASL-RKTDS-----------K-GKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hcchHHHHHHHhcchhh-eeccc-----------C-CCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999987 55555           6 999999999999999999996654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.66  E-value=1.4e-06  Score=94.94  Aligned_cols=132  Identities=16%  Similarity=0.174  Sum_probs=99.1

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcc--cccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPN--ALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~--~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ...++.....|+..||.-.|++.+.+....  .+++. |.-|+++|| .|+.+.+.|++++|+++ +..        . .
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~-iai~nenle~~eLLl~~-~~~--------~-g   89 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALH-IAIDNENLELQELLLDT-SSE--------E-G   89 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhcee-cccccccHHHHHHHhcC-ccc--------c-c
Confidence            344566688999999999999999333332  23444 888999999 99999999999999998 211        1 4


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      .+|-+|++.|.+++|+.++.....-..... .++++..... . +.|||++||..++.||+++|+.+++
T Consensus        90 dALL~aI~~~~v~~VE~ll~~~~~~~~~~~-~~d~~~~~ft-~-ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVHFVDAPYLER-SGDANSPHFT-P-DITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccchhcc-ccccCcccCC-C-CccHHHHHHHhcchHHHHHHHHcCC
Confidence            588999999999999999987543211111 2222222333 5 7899999999999999999999988

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.55  E-value=8.9e-08  Score=96.57  Aligned_cols=101  Identities=13%  Similarity=0.007  Sum_probs=84.3

Q ss_pred             cchhhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCcccccccc
Q 006173           24 KDEKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFA  103 (658)
Q Consensus        24 ~~~~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~  103 (658)
                      +.+.-..+.+.-.+++.|++.||+..++.+.  -.+.++..+ |-+.+|+|| +||..|++++|++|++. ...+.+.+ 
T Consensus       496 RR~~~~~~~~~~i~~~~aa~~GD~~alrRf~--l~g~D~~~~-DyD~RTaLH-vAAaEG~v~v~kfl~~~-~kv~~~~k-  569 (622)
T KOG0506|consen  496 RREGGPRENDTVINVMYAAKNGDLSALRRFA--LQGMDLETK-DYDDRTALH-VAAAEGHVEVVKFLLNA-CKVDPDPK-  569 (622)
T ss_pred             ccccCcccccchhhhhhhhhcCCHHHHHHHH--Hhccccccc-ccccchhhe-eecccCceeHHHHHHHH-HcCCCChh-
Confidence            3333355566778899999999999999998  333456555 888999999 99999999999999998 44447788 


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYN  130 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~  130 (658)
                      |..|+|||--|-..+|.+++++|-+..
T Consensus       570 DRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  570 DRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            999999999999999999999998764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.53  E-value=3e-07  Score=93.19  Aligned_cols=97  Identities=21%  Similarity=0.251  Sum_probs=85.5

Q ss_pred             cccccCCCCChH------HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh
Q 006173           99 LQNFARDEGSEY------MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHL  172 (658)
Q Consensus        99 l~~~~d~~G~Tp------Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~L  172 (658)
                      +..+ |++|.|+      ||-.++.|+.+..-.||..|++.+.....           + |.||||+|++.|+..-+++|
T Consensus       120 ~~~r-DdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe-----------k-g~TpLHvAAk~Gq~~Q~ElL  186 (669)
T KOG0818|consen  120 LPCR-DDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE-----------K-GNTPLHVAAKAGQILQAELL  186 (669)
T ss_pred             CCCC-CcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc-----------c-CCchhHHHHhccchhhhhHH
Confidence            3455 7778775      99999999999999999988886555555           7 99999999999999999999


Q ss_pred             ccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          173 LPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       173 l~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                      +-+|++ ...|.+|.||+.+|-..||.++++.|++..
T Consensus       187 ~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  187 AVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             hhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHHH
Confidence            999997 588999999999999999999999998763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.50  E-value=1.4e-07  Score=59.34  Aligned_cols=28  Identities=18%  Similarity=0.447  Sum_probs=23.3

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCC
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEEL  133 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l  133 (658)
                      +|+||||+||+.|+.|+|++|+++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4788888888888888888888888765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.46  E-value=1e-07  Score=102.17  Aligned_cols=105  Identities=14%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             HHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccC-CCCChHHHHHHhcCC
Q 006173           41 YILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFAR-DEGSEYMEYAVSTGK  119 (658)
Q Consensus        41 A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d-~~G~TpLh~Aa~~G~  119 (658)
                      +.-.|....++.++ +++....-...|..|+|+|| +|+..|..++++.||++| .+ +..+ | +.|+||||-|.+.||
T Consensus        24 ~~tKs~~Nqlk~F~-~k~c~n~anikD~~GR~alH-~~~S~~k~~~l~wLlqhG-id-v~vq-D~ESG~taLHRaiyyG~   98 (1267)
T KOG0783|consen   24 SKTKSEPNQLKGFS-EKSCQNLANIKDRYGRTALH-IAVSENKNSFLRWLLQHG-ID-VFVQ-DEESGYTALHRAIYYGN   98 (1267)
T ss_pred             hhhcCChhHHHHHH-HHhhhhhhhHHHhhccceee-eeeccchhHHHHHHHhcC-ce-eeec-cccccchHhhHhhhhch
Confidence            33344555677777 66555443444888999999 999999999999999984 33 5566 5 478899999999999


Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHh
Q 006173          120 LNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKA  163 (658)
Q Consensus       120 ~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~  163 (658)
                      ++++-.||.+|..+ .+.++           + |..||..-++-
T Consensus        99 idca~lLL~~g~SL-~i~Dk-----------e-glsplq~~~r~  129 (1267)
T KOG0783|consen   99 IDCASLLLSKGRSL-RIKDK-----------E-GLSPLQFLSRV  129 (1267)
T ss_pred             HHHHHHHHhcCCce-EEecc-----------c-CCCHHHHHhhc
Confidence            99999999888775 66666           7 99998877663

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.45  E-value=1.2e-07  Score=101.75  Aligned_cols=85  Identities=7%  Similarity=0.013  Sum_probs=76.6

Q ss_pred             hhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCC
Q 006173          348 HEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKR  427 (658)
Q Consensus       348 ~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G  427 (658)
                      .+++|..|+|+||+|+..|..+++++||++| .+..-.-...|+||||-|+.+|+.+++.+||++|+    .+..+|++|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhG-idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~----SL~i~Dkeg  119 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHG-IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR----SLRIKDKEG  119 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcC-ceeeeccccccchHhhHhhhhchHHHHHHHHhcCC----ceEEecccC
Confidence            3557888999999999999999999999999 77655544689999999999999999999999997    778999999


Q ss_pred             CchhhhHhhc
Q 006173          428 INILHIAAMS  437 (658)
Q Consensus       428 ~TpLHlAa~~  437 (658)
                      ..||..-++-
T Consensus       120 lsplq~~~r~  129 (1267)
T KOG0783|consen  120 LSPLQFLSRV  129 (1267)
T ss_pred             CCHHHHHhhc
Confidence            9999999983

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.36  E-value=2.2e-06  Score=87.12  Aligned_cols=79  Identities=13%  Similarity=0.095  Sum_probs=72.2

Q ss_pred             cHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhh
Q 006173          357 KPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAM  436 (658)
Q Consensus       357 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  436 (658)
                      .-||..++.|+.++.--||..| ++....--.+|.||||+|++.|+..-+++|+-+|+    +++++|.+|.||+.||-.
T Consensus       135 rQLhasvRt~nlet~LRll~lG-A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA----D~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLG-AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA----DPGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcc-cccCCCCcccCCchhHHHHhccchhhhhHHhhccC----CCCCCCCCCCcHHHHHHh
Confidence            3599999999999999999999 77666556799999999999999999999999999    889999999999999999


Q ss_pred             cCCC
Q 006173          437 SVPS  440 (658)
Q Consensus       437 ~g~~  440 (658)
                      .|+.
T Consensus       210 ~gH~  213 (669)
T KOG0818|consen  210 GGHH  213 (669)
T ss_pred             cCch
Confidence            9994

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.34  E-value=9.5e-07  Score=90.86  Aligned_cols=97  Identities=18%  Similarity=0.137  Sum_probs=85.8

Q ss_pred             ccccccCCCCChHHHHHHhcCCHHHHHHHHhcCC-CCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173           98 CLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNE-ELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus        98 ~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~-~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      .+-.+ +.+.+|-||+|+..|+-|+|+++++++| ++....+.           . |+|+||-|+-.++..+.++|++.|
T Consensus       891 ~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de-----------~-get~lhkaa~~~~r~vc~~lvdag  957 (1004)
T KOG0782|consen  891 SLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADE-----------T-GETALHKAACQRNRAVCQLLVDAG  957 (1004)
T ss_pred             ceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh-----------h-hhHHHHHHHHhcchHHHHHHHhcc
Confidence            36677 8899999999999999999999999987 34455555           7 999999999999999999999999


Q ss_pred             CC-CCCCCcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          177 RE-PLDGRQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       177 ~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                      +. ...|..|.||-..|-..|..|++.+|-.+
T Consensus       958 asl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  958 ASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            94 67899999999999999999999988765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.34  E-value=5.6e-07  Score=58.29  Aligned_cols=32  Identities=13%  Similarity=0.244  Sum_probs=22.5

Q ss_pred             CCChHHHHHHHhCCHhHHHHHhcCCCcccccccccc
Q 006173          389 DGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANID  424 (658)
Q Consensus       389 ~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D  424 (658)
                      +|+||||+|+.+++.+++++|++.|+    +++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga----~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA----DINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS----CTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC----CCCCCC
Confidence            46777777777777777777777776    555555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.31  E-value=1.1e-06  Score=90.71  Aligned_cols=91  Identities=18%  Similarity=0.086  Sum_probs=77.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      .|||.++...+++.....+ .......-.+.|..|+|||| .|+.-||.+.++.|+..+ .+ +..+ |++|+||||.|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el-~~~~~~~id~~D~~g~TpLh-lAV~Lg~~~~a~~Ll~a~-Ad-v~~k-N~~gWs~L~EAv   96 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQEL-LAKVSLVIDRRDPPGRTPLH-LAVRLGHVEAARILLSAG-AD-VSIK-NNEGWSPLHEAV   96 (560)
T ss_pred             cccchhhhccchhhHHHHH-hhhhhceeccccCCCCccHH-HHHHhcCHHHHHHHHhcC-CC-cccc-ccccccHHHHHH
Confidence            5699999999999998877 34333334456889999999 999999999999999994 33 7788 999999999999


Q ss_pred             hcCCHHHHHHHHhcCC
Q 006173          116 STGKLNLITTLMGYNE  131 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~  131 (658)
                      ..|+.+++..++.+..
T Consensus        97 ~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   97 STGNEQIITEVLRHLK  112 (560)
T ss_pred             HcCCHHHHHHHHHHhH
Confidence            9999999999887643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.30  E-value=7.4e-07  Score=56.00  Aligned_cols=25  Identities=8%  Similarity=0.211  Sum_probs=14.5

Q ss_pred             CChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          390 GYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       390 G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      |+||||+|+.+|+.+++++|++.|+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            5555555555555555555555554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.27  E-value=0.00048  Score=75.81  Aligned_cols=115  Identities=18%  Similarity=0.126  Sum_probs=97.2

Q ss_pred             hhhcCCChHHHHHHHhcCCc--cccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCC
Q 006173           77 VGIPDVPATLVDKLLSKVPR--NCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDL  154 (658)
Q Consensus        77 ~Aa~~g~~~iv~~Ll~~~~~--~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~  154 (658)
                      .|+..|+.-.|+..++....  -.+|.. |.-|+++||+|..+-|.|++++|++.+-..     .           +   
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenle~~eLLl~~~~~~-----g-----------d---   90 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENLELQELLLDTSSEE-----G-----------D---   90 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccHHHHHHHhcCcccc-----c-----------h---
Confidence            69999999999999987533  246777 999999999999999999999999877553     2           3   


Q ss_pred             cHHHHHHHhCcHHHHHHhccCCCCC-----------CCCCcchhHHHHHHhcCcHHHHHHHHHhCCCcc
Q 006173          155 LPVHMAAKAGKRDAVRHLLPKTREP-----------LDGRQGFVLLKFLIDSNLFDMALALLKCHPMIA  212 (658)
Q Consensus       155 TpLh~Aa~~g~~~iv~~Ll~~~~~~-----------~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~  212 (658)
                       +|.+|+..|..++|+.++.+....           ..-..+.||+..|+..+++||++.||+++..+.
T Consensus        91 -ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   91 -ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             -HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence             899999999999999999987621           333456799999999999999999999976654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=1.5e-06  Score=89.59  Aligned_cols=90  Identities=17%  Similarity=0.257  Sum_probs=73.7

Q ss_pred             cHHHHhhhcCCChHHHHH-HHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccC
Q 006173           72 IFEFIVGIPDVPATLVDK-LLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEE  150 (658)
Q Consensus        72 T~Lh~~Aa~~g~~~iv~~-Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~  150 (658)
                      -||| .++.....+-... |... ....++.. |..|+||||+|+..|+.+.++.|+..++++ .++|+           
T Consensus        22 ~~lh-~~~~~~~~~sl~~el~~~-~~~~id~~-D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~-----------   86 (560)
T KOG0522|consen   22 KPLH-WAVVTTDSDSLEQELLAK-VSLVIDRR-DPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNN-----------   86 (560)
T ss_pred             cccc-hhhhccchhhHHHHHhhh-hhceeccc-cCCCCccHHHHHHhcCHHHHHHHHhcCCCc-ccccc-----------
Confidence            3599 8887777555444 4443 34457788 999999999999999999999999999986 66777           


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          151 KDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       151 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      . |++|||-|+..|+.+++..++.+..
T Consensus        87 ~-gWs~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   87 E-GWSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             c-cccHHHHHHHcCCHHHHHHHHHHhH
Confidence            6 9999999999999998888877643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.25  E-value=1.4e-06  Score=56.45  Aligned_cols=28  Identities=18%  Similarity=0.497  Sum_probs=21.8

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCC
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEEL  133 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l  133 (658)
                      +|+||||+||..|+.+++++|++.++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            4778888888888888888888877765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.21  E-value=1.3e-06  Score=88.30  Aligned_cols=95  Identities=12%  Similarity=0.099  Sum_probs=80.2

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      ..++..+++ +|++.|++..++.+.-. + .+++.. |-+.+|+||.||..|+++++++|++.....+..++.       
T Consensus       503 ~~~~~i~~~-~aa~~GD~~alrRf~l~-g-~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR-------  571 (622)
T KOG0506|consen  503 ENDTVINVM-YAAKNGDLSALRRFALQ-G-MDLETK-DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR-------  571 (622)
T ss_pred             cccchhhhh-hhhhcCCHHHHHHHHHh-c-cccccc-ccccchhheeecccCceeHHHHHHHHHcCCCChhhc-------
Confidence            345567889 99999999998887765 2 348888 999999999999999999999999987665566666       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                          - |+|||--|...+|.+++++|-+...
T Consensus       572 ----w-~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  572 ----W-GRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             ----c-CCCcchHhHhcCcHHHHHHHHHHhc
Confidence                7 9999999999999999999977644

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.10  E-value=5.4e-06  Score=85.95  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=67.0

Q ss_pred             hhhcCCChHHHHHHHhcCCcccc--ccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCC
Q 006173           77 VGIPDVPATLVDKLLSKVPRNCL--QNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDL  154 (658)
Q Consensus        77 ~Aa~~g~~~iv~~Ll~~~~~~~l--~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~  154 (658)
                      .|+...++..+-+||.+|...-+  ... +.+|+||||+||+.|++.+.++|+=.+.++ ..++.           . |.
T Consensus       630 ~A~~~~Dl~t~~lLLAhg~~~e~~~t~~-~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda-----------~-g~  695 (749)
T KOG0705|consen  630 RAVAAEDLQTAILLLAHGSREEVNETCG-EGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDA-----------H-GR  695 (749)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhcccc-CCCCcchhhhhhhhcchhHHHHHHHhCccc-eeccc-----------C-Cc
Confidence            57777777777788877633222  233 567788999999999998888888888775 55555           5 88


Q ss_pred             cHHHHHHHhCcHHHHHHhccCCCC
Q 006173          155 LPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       155 TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      |+|.||-..|..+++..|+++|..
T Consensus       696 t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  696 TALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhhhhHhhcccHHHHHHHHHcCCC
Confidence            888888888888888888888873

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.93  E-value=2.4e-05  Score=81.28  Aligned_cols=89  Identities=13%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcc--ccccc-ccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPN--ALTCI-IVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYME  112 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~--~~~~~-~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh  112 (658)
                      ..|..|+...|+..+..||  .++.  .++.. -+.+|+|+|| .||+.|++.+.++|+=++ .+ +... |.+|+|||.
T Consensus       626 qqLl~A~~~~Dl~t~~lLL--Ahg~~~e~~~t~~~~~grt~LH-La~~~gnVvl~QLLiWyg-~d-v~~r-da~g~t~l~  699 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLL--AHGSREEVNETCGEGDGRTALH-LAARKGNVVLAQLLIWYG-VD-VMAR-DAHGRTALF  699 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hccCchhhhccccCCCCcchhh-hhhhhcchhHHHHHHHhC-cc-ceec-ccCCchhhh
Confidence            4488999999999999998  4443  23322 2456799999 999999999999999874 33 7788 999999999


Q ss_pred             HHHhcCCHHHHHHHHhcC
Q 006173          113 YAVSTGKLNLITTLMGYN  130 (658)
Q Consensus       113 ~Aa~~G~~~iv~~Ll~~~  130 (658)
                      ||-..|.-|++..|+..|
T Consensus       700 yar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYG  717 (749)
T ss_pred             hHhhcccHHHHHHHHHcC
Confidence            999999999999999986

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.86  E-value=1.1e-05  Score=90.15  Aligned_cols=125  Identities=12%  Similarity=0.074  Sum_probs=98.2

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhc-CCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCC
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSK-VPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDP  144 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~-~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~  144 (658)
                      ..-.|.|.|| .++..++.-+++.+++- +..  -... |.+|.-.+|+ |..++.+.+-+|......-..+++.     
T Consensus       570 ~~~r~~lllh-L~a~~lyawLie~~~e~~~~~--~~el-d~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~-----  639 (975)
T KOG0520|consen  570 VNFRDMLLLH-LLAELLYAWLIEKVIEWAGSG--DLEL-DRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR-----  639 (975)
T ss_pred             CCCcchHHHH-HHHHHhHHHHHHHHhcccccC--chhh-cccCCChhhH-hhhcCCceeEEEEeecccccccccC-----
Confidence            3557899999 99999999999999985 222  2233 6677777777 6667777777777665554566666     


Q ss_pred             CCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-------CCCCCcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          145 NIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-------PLDGRQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       145 ~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-------~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                            . |+||||||+..|+..++..|++.+++       ......|.|+-..|..+|+..+.-+|-+.
T Consensus       640 ------~-G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  640 ------N-GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ------C-CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence                  7 99999999999999999999988773       24556799999999999999888877665

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.73  E-value=5.8e-05  Score=67.79  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             cccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173           99 LQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus        99 l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      ++.+ |..|+|||+.||..|+.+.|.+|+.++...+...+.           . |.+.+.+|=+.|+.++|+.|.+..
T Consensus         5 in~r-D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~-----------s-sldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    5 INAR-DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE-----------S-SLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             ccch-hhhcchHHHHHhhhcchhHHHHHhccCccccccccc-----------c-cchHHHHHHhcChHHHHHHHHHHh
Confidence            4555 666666666666666666666666666333344444           4 556666666666666665555543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.70  E-value=3.5e-05  Score=86.23  Aligned_cols=132  Identities=11%  Similarity=0.025  Sum_probs=103.3

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      ...+++-||.++..|..-.+.+++ +-. +......+.+|.-.+| + |..++.+..-+|+.. ....++.+ |..|+||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~-e~~-~~~~~eld~d~qgV~h-f-ca~lg~ewA~ll~~~-~~~ai~i~-D~~G~tp  644 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVI-EWA-GSGDLELDRDGQGVIH-F-CAALGYEWAFLPISA-DGVAIDIR-DRNGWTP  644 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHh-ccc-ccCchhhcccCCChhh-H-hhhcCCceeEEEEee-cccccccc-cCCCCcc
Confidence            456888999999999999999999 532 2233444888999999 7 777888888888776 44558999 9999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccC
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPK  175 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~  175 (658)
                      ||+|+..|+..++..|++.+++-....     ||.-..- . |.|+-..|..+|+..+.-+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~t-----dps~~~p-~-g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVT-----DPSPETP-G-GKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhcccccccc-----CCCCCCC-C-CCchhhhhhcccccchHHHHhhh
Confidence            999999999999999998877543222     2322222 5 89999999999999998888665

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.62  E-value=0.00014  Score=65.43  Aligned_cols=75  Identities=9%  Similarity=0.017  Sum_probs=62.9

Q ss_pred             cccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCccccc
Q 006173           61 ALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVE  139 (658)
Q Consensus        61 ~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~  139 (658)
                      .++.+ |..|+|||+ .|+..|+.+.|.+|+.++. ..+... |..|.+++.+|-+.|+.++|+.|-+...+-....+.
T Consensus         4 ~in~r-D~fgWTalm-caa~eg~~eavsyllgrg~-a~vgv~-d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns   78 (223)
T KOG2384|consen    4 NINAR-DAFGWTALM-CAAMEGSNEAVSYLLGRGV-AFVGVT-DESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS   78 (223)
T ss_pred             Cccch-hhhcchHHH-HHhhhcchhHHHHHhccCc-cccccc-ccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence            35555 889999999 9999999999999999953 348888 999999999999999999999999886554333333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.51  E-value=0.00017  Score=71.35  Aligned_cols=59  Identities=20%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC
Q 006173          108 SEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP  179 (658)
Q Consensus       108 ~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~  179 (658)
                      .--|..||+.|.++.|++|++.|-++ +..+.           . ...||.+|+..||.++|++|+++|+.-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~-----------f-D~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDR-----------F-DSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhc-----------c-cccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            44589999999999999999988876 44444           4 788999999999999999999999953

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.49  E-value=8.1e-05  Score=84.04  Aligned_cols=81  Identities=11%  Similarity=-0.027  Sum_probs=74.9

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhh
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILH  432 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  432 (658)
                      ..|.|+||.|+..|..-++++|++.+ .+ ++.+|..|+||||.+...|+...+..++++|+    .-++.|.+|.+||+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g-a~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a----~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG-AD-VNALDSKGRTPLHHATASGHTSIACLLLKRGA----DPNAFDPDGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC-Cc-chhhhccCCCcchhhhhhcccchhhhhccccc----cccccCccCcchhh
Confidence            45789999999999999999999999 65 88899999999999999999999999999998    66899999999999


Q ss_pred             hHhhcCC
Q 006173          433 IAAMSVP  439 (658)
Q Consensus       433 lAa~~g~  439 (658)
                      +|....+
T Consensus       728 ~a~~~~~  734 (785)
T KOG0521|consen  728 IAMEAAN  734 (785)
T ss_pred             HHhhhcc
Confidence            9988844

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.37  E-value=0.00017  Score=81.58  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=75.3

Q ss_pred             CCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCc
Q 006173           68 DQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIK  147 (658)
Q Consensus        68 ~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~  147 (658)
                      ..|.|+|| .|+..|..-++++|++.+. + ++.. |..|+||||.+...|+...+..|++++++. ...+.        
T Consensus       654 ~~~~s~lh-~a~~~~~~~~~e~ll~~ga-~-vn~~-d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~--------  720 (785)
T KOG0521|consen  654 CIGCSLLH-VAVGTGDSGAVELLLQNGA-D-VNAL-DSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDP--------  720 (785)
T ss_pred             hcccchhh-hhhccchHHHHHHHHhcCC-c-chhh-hccCCCcchhhhhhcccchhhhhccccccc-cccCc--------
Confidence            35799999 9999999999999999953 4 8899 999999999999999999999999988875 44454        


Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHh
Q 006173          148 DEEKDDLLPVHMAAKAGKRDAVRHL  172 (658)
Q Consensus       148 ~~~~~G~TpLh~Aa~~g~~~iv~~L  172 (658)
                         + |.+||++|....+.+++-+|
T Consensus       721 ---~-~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  721 ---D-GKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             ---c-CcchhhHHhhhccccHHHHH
Confidence               5 99999999887666665544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.22  E-value=0.00062  Score=67.58  Aligned_cols=75  Identities=11%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCC-CCChHHHH
Q 006173           35 YKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARD-EGSEYMEY  113 (658)
Q Consensus        35 ~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~-~G~TpLh~  113 (658)
                      +..|.+||+.||.+.|+.|+ + .+-.+|+. |+...+||. .|+-.||.++|++|+++|.   +..+ |. +|.-+ ||
T Consensus        37 f~elceacR~GD~d~v~~LV-e-tgvnVN~v-D~fD~spL~-lAsLcGHe~vvklLLenGA---iC~r-dtf~G~RC-~Y  107 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLV-E-TGVNVNAV-DRFDSSPLY-LASLCGHEDVVKLLLENGA---ICSR-DTFDGDRC-HY  107 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHH-H-hCCCcchh-hcccccHHH-HHHHcCcHHHHHHHHHcCC---cccc-cccCcchh-hh
Confidence            66799999999999999999 5 44556655 888899999 9999999999999999963   3333 33 44443 55


Q ss_pred             HHhcC
Q 006173          114 AVSTG  118 (658)
Q Consensus       114 Aa~~G  118 (658)
                      ++-+.
T Consensus       108 gaLnd  112 (516)
T KOG0511|consen  108 GALND  112 (516)
T ss_pred             hhhhH
Confidence            55443

>smart00248 ANK ankyrin repeats

Probab=96.18  E-value=0.0079  Score=36.36  Aligned_cols=26  Identities=19%  Similarity=0.431  Sum_probs=18.4

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCC
Q 006173          107 GSEYMEYAVSTGKLNLITTLMGYNEE  132 (658)
Q Consensus       107 G~TpLh~Aa~~G~~~iv~~Ll~~~~~  132 (658)
                      |.||||+|+..|+.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            66777777777777777777766654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.69  E-value=0.012  Score=35.55  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=20.7

Q ss_pred             CCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          153 DLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       153 G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      |.||+|+|+..|+.+++++|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7788888888888888888887765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.22  E-value=0.45  Score=44.68  Aligned_cols=118  Identities=11%  Similarity=0.124  Sum_probs=80.0

Q ss_pred             HHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCC---ccccccccCCCCChHHHH
Q 006173           37 QVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVP---RNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        37 ~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~---~~~l~~~~d~~G~TpLh~  113 (658)
                      .|-.|+..-|.+.+-.+. .. ..        +-.++|. .|...+..+++.+|+....   .+.+...   .+.--+.|
T Consensus       156 sledAV~AsN~~~i~~~V-td-Kk--------dA~~Am~-~si~~~K~dva~~lls~f~ft~~dv~~~~---~~~ydieY  221 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLV-TD-KK--------DAHQAMW-LSIGNAKEDVALYLLSKFNFTKQDVASME---KELYDIEY  221 (284)
T ss_pred             cHHHHHhhcCHHHHHHHh-cc-hH--------HHHHHHH-HHhcccHHHHHHHHHhhcceecchhhhcC---cchhhHHH
Confidence            477888888888888877 22 11        1247888 9999999999999998752   1212221   22223444


Q ss_pred             HH--hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          114 AV--STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       114 Aa--~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      +-  -+.+..++++.+++|---++.+-        +-.|. |.|-|--|..+++.+++.+|+++|+
T Consensus       222 ~LS~h~a~~kvL~~Fi~~Glv~vN~~F--------~~~NS-GdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  222 LLSEHSASYKVLEYFINRGLVDVNKKF--------QKVNS-GDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHhhcCCcHHHHHHHHhccccccchhh--------hccCC-cchHHHhHHhcCcHHHHHHHHHcCc
Confidence            43  34467788888887643222111        12235 9999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.88  E-value=0.12  Score=53.77  Aligned_cols=62  Identities=8%  Similarity=-0.024  Sum_probs=44.9

Q ss_pred             HHHHHHHhhcCCCc-----ccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHh
Q 006173          369 EIVMGIMNSYFPWS-----LEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAA  435 (658)
Q Consensus       369 ~~v~~Ll~~~~~~~-----~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  435 (658)
                      ..+++|.+.. .+.     ....+..--|+||+|+..|..++|.++|+.|.    +-..+|..|+||..+++
T Consensus       405 ~~ie~lken~-lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~----Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  405 DSIEALKENL-LSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC----DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcC-CcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC----CchhcccCCCCcccccc
Confidence            3455555554 322     12234456789999999999999999999986    45788999999998887

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=90.97  E-value=0.27  Score=51.29  Aligned_cols=63  Identities=8%  Similarity=-0.003  Sum_probs=50.1

Q ss_pred             HHHHHHhccCCCC-------CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcC
Q 006173          166 RDAVRHLLPKTRE-------PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKR  229 (658)
Q Consensus       166 ~~iv~~Ll~~~~~-------~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~  229 (658)
                      .+.+++|.+++..       ...+.--.|+||+|+.+|.-++|.++|+.. ..+..+|..|.||..+++..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccccH
Confidence            4566677766652       234455679999999999999999999997 77789999999999987744

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.86  E-value=6.5  Score=36.07  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=38.0

Q ss_pred             HHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhc
Q 006173          358 PMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFN  411 (658)
Q Consensus       358 pLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  411 (658)
                      -|..|+..|-...+.+.++.+ .+       ...++|-.|+++++..|+.+++.
T Consensus       146 hl~~a~~kgll~F~letlkyg-g~-------~~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYG-GN-------VDIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcC-Cc-------ccHHHHHHHHHhhHHHHHHHhhc
Confidence            467789999999999999998 33       22399999999999999998875

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=85.59  E-value=4.8  Score=38.03  Aligned_cols=48  Identities=21%  Similarity=0.266  Sum_probs=36.5

Q ss_pred             cHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          155 LPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       155 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                      -.|--|+...+.+-+.-++....      .-.+++-+|+..+..+++.+|+.+.
T Consensus       155 isledAV~AsN~~~i~~~VtdKk------dA~~Am~~si~~~K~dva~~lls~f  202 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK------DAHQAMWLSIGNAKEDVALYLLSKF  202 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH------HHHHHHHHHhcccHHHHHHHHHhhc
Confidence            35667888888777777765533      2468899999999999999999874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.57  E-value=1.4  Score=34.47  Aligned_cols=48  Identities=19%  Similarity=0.153  Sum_probs=41.3

Q ss_pred             cHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          155 LPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       155 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                      .-+..|+..|+.|+++.+++.+...      ...+..|+...+.|++++|++++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4689999999999999999765321      66799999999999999999985

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.96  E-value=2.4  Score=33.19  Aligned_cols=47  Identities=15%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             cHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcC
Q 006173          357 KPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       357 tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                      .-+..|...|+.|+++.+++.. ..     +   ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            5678999999999999999765 11     1   5679999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=80.64  E-value=0.93  Score=41.56  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=42.9

Q ss_pred             ccCCChHHHHHHHhCCHhHHH-HHhcCCCcccccccccccCCCchhhhHhhc
Q 006173          387 NKDGYDIFKVAVEHRREKVFN-IIFNFPNIYPFFMANIDEKRINILHIAAMS  437 (658)
Q Consensus       387 d~~G~T~Lh~A~~~~~~~iv~-~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  437 (658)
                      |.+-.+|||-|++-++.+++- |+++..+.-+..+|..|.+|..+|.+|.-.
T Consensus       219 d~kTe~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~~  270 (280)
T KOG4591|consen  219 DGKTENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALCR  270 (280)
T ss_pred             cCCCcchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHHH
Confidence            566778999999999999875 677887767778999999999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	658
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 71/584 (12%), Positives = 176/584 (30%), Gaps = 169/584 (28%)

Query: 158 HMAAKAGK-----RDAVRHLLPKTREPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIA 212
           HM  + G+     +D +        +  D +    + K ++     D        H +++
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--------HIIMS 57

Query: 213 RADIGETGKILESLSKRP----KAFASGSRLGSWKRLLYQWI--PIQEEYNPHPHPPSEN 266
           +  +  T ++  +L  +     + F     +    R+ Y+++  PI+ E    P   +  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKF-----VEEVLRINYKFLMSPIKTEQR-QPSMMTRM 111

Query: 267 VGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKII 326
                ++  +        K+ +          R +    L   L+EL P+ K++    +I
Sbjct: 112 YIEQRDRLYNDNQV--FAKYNVS---------RLQPYLKLRQALLELRPA-KNV----LI 155

Query: 327 H------EQTLEILRIMCAGAVDILNTHEEAQNVFKKPMF--KAARLGIYEIVMGIMNS- 377
                  +  +         A+D+  +++  Q      +F          E V+ ++   
Sbjct: 156 DGVLGSGKTWV---------ALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 378 YFPWSLEFKNK-DGYDIFKVAVEHRREKVFNIIFNFPNIYP---FFMANIDEKRINILHI 433
            +     + ++ D     K+ +   + ++  ++ + P  Y      + N+   +      
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKA----W 259

Query: 434 AAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTL--------QDQLNDKDKTPREVFTK 485
            A ++                       +C    L         D L+    T   +   
Sbjct: 260 NAFNL-----------------------SC--KILLTTRFKQVTDFLS--AATTTHISLD 292

Query: 486 EHEKLVEEGE------KWMKDTAGSCSVVATLI--MTI-VFAAAITVPGGSDSRGMPNFL 536
            H   +   E      K++                  + + A +I      D     +  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-----RDGLATWDNW 347

Query: 537 EEPSF----TIFGIS-------------NALALFSSVISVLI---FLGIL---TSRFSEE 573
           +  +     TI   S             + L++F    S  I    L ++     +    
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--SAHIPTILLSLIWFDVIKSDVM 405

Query: 574 DFLVSLPRK-LI--------IGLITLFFSIACLMVAFAATVH---ITQFHPWK----WVI 617
             +  L +  L+        I + +++  +   +    A +H   +  ++  K      +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDL 464

Query: 618 IPTALLGFLPVFL---FATLQFPLLIEVFASTYGPGIFHPMKFL 658
           IP  L  +    +      ++ P  + +F       +F   +FL
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFL 503

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 70/509 (13%), Positives = 141/509 (27%), Gaps = 192/509 (37%)

Query: 26  EKIIKDIDSY--KQVTRYILENDWKGLEDYIMSKTPNA-----LTCIIVDQSSIFE-FIV 77
           +  + + D    + + + IL    + ++  IMSK   +        ++  Q  + + F+ 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 78  GI------------------PDVPATL----VDKL------LSK--VPR--------NCL 99
            +                  P +   +     D+L       +K  V R          L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 100 QNF-----------------------ARDEGSE-YMEYAV---STGKLNLITTLMGYNEE 132
                                           +  M++ +   +    N   T++   ++
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 133 L-----PNIKVEKKDDPNIKD--EEKDDLLPVHMAAKAGKR-----DAVRHLLPKTREPL 180
           L     PN         NIK         L   + +K  +        V++   K     
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF 262

Query: 181 DGRQGFVLLKFLI---DSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGS 237
           +        K L+      + D   A    H  +    +  T    E  S          
Sbjct: 263 NLS-----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKS---------- 305

Query: 238 RLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFG- 296
                  LL +++  + +              DL +++  T+  +L         S    
Sbjct: 306 -------LLLKYLDCRPQ--------------DLPREVLTTNPRRL---------SIIAE 335

Query: 297 SLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFK 356
           S+R  L    W+N               +  ++   I+      ++++L    E + +F 
Sbjct: 336 SIRDGLA--TWDNW------------KHVNCDKLTTIIES----SLNVLEP-AEYRKMFD 376

Query: 357 K-PMF------KAARLGI------YEIVMGIMNSYFPWSLEFKNKDG-----YDI---FK 395
           +  +F          L +         VM ++N    +SL  K           I    K
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 396 VAVE-----HRREKVFNII--FNFPNIYP 417
           V +E     HR      I+  +N P  + 
Sbjct: 437 VKLENEYALHRS-----IVDHYNIPKTFD 460

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	658
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.63
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.6

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-43  Score=383.26  Aligned_cols=376  Identities=14%  Similarity=0.109  Sum_probs=277.2

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ..+-.+.||||.||..|+.+.|+.|+ +. +...+.. +..|+|||| .||..|+.++|++|++.+ .+ ++.+ |..|.
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll-~~-g~~~~~~-~~~~~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~   81 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVKNLL-QR-GASPNVS-NVKVETPLH-MAARAGHTEVAKYLLQNK-AK-VNAK-AKDDQ   81 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHH-HT-TCCSCCS-SSCCCCHHH-HHHHHTCHHHHHHHHHHT-CC-SSCC-CTTSC
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHH-Hc-CCCCCCC-CCCCCCHHH-HHHHcCCHHHHHHHHhCC-CC-CCCC-CCCCC
Confidence            34456889999999999999999999 44 4444444 788999999 999999999999999994 33 7788 99999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchh
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFV  187 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t  187 (658)
                      ||||+||..|+.++|++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ...+..|.|
T Consensus        82 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-----------~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  148 (437)
T 1n11_A           82 TPLHCAARIGHTNMVKLLLENNANP-NLATT-----------A-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT  148 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCT-TCCCT-----------T-CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CHHHHHHHCCCHHHHHHHHhCCCCC-CCCCC-----------C-CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC
Confidence            9999999999999999999999875 44455           6 99999999999999999999999985 567889999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENV  267 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  267 (658)
                      |||+|+..|+.+++++|++++.+ .+..+.+|.||||+|+..+       +..+++.++..........          .
T Consensus       149 ~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~~----------~  210 (437)
T 1n11_A          149 PLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHN-------NLDIVKLLLPRGGSPHSPA----------W  210 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTT-------CHHHHHHHGGGTCCSCCCC----------T
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcC-------CHHHHHHHHhCCCCCCCcC----------C
Confidence            99999999999999999998544 5778899999999999986       3466777765443221100          0


Q ss_pred             CCchhh-hhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHH-HHhhhhhHHHHHHHHHHHHhhhhhh
Q 006173          268 GGDLEK-QLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSI-RDAKIIHEQTLEILRIMCAGAVDIL  345 (658)
Q Consensus       268 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~  345 (658)
                      .+.-+- +........++.++++........+.               .+...+ ......+   .++++.+++    ..
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------------~g~t~L~~A~~~g~---~~~v~~Ll~----~~  268 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV---------------QGVTPLHLAAQEGH---AEMVALLLS----KQ  268 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------TCCCHHHHHHHTTC---HHHHHHHHT----TT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------CCCCHHHHHHHCCC---HHHHHHHHh----cC
Confidence            011111 11111223455555554321111110               000011 1112222   233444433    33


Q ss_pred             cchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCccccccccccc
Q 006173          346 NTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDE  425 (658)
Q Consensus       346 ~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~  425 (658)
                      .+.+..+..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.
T Consensus       269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d~n~~~~  342 (437)
T 1n11_A          269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTK  342 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC----CTTCCCT
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-cc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC----CCCCCCC
Confidence            445567888999999999999999999999998 55 56779999999999999999999999999988    7899999


Q ss_pred             CCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcCcchhhhccCCCCCchhhhHHH
Q 006173          426 KRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTKE  486 (658)
Q Consensus       426 ~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~Tp~dl~~~~  486 (658)
                      .|+||||+|++.|+.+.+           .+.  ++.   ....+.+|.+|+||++++.+.
T Consensus       343 ~g~t~L~~A~~~g~~~iv-----------~~L--l~~---ga~~~~~~~~g~t~l~~A~~~  387 (437)
T 1n11_A          343 LGYSPLHQAAQQGHTDIV-----------TLL--LKN---GASPNEVSSDGTTPLAIAKRL  387 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHH-----------HHH--HHT---TCCSCCCCSSSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHCChHHHH-----------HHH--HHC---cCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999984221           111  111   123667899999999998654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9e-41  Score=361.04  Aligned_cols=347  Identities=14%  Similarity=0.118  Sum_probs=258.5

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ..+..+.+|||.|+..|+.+.++.|+ +. +..++.+ +.+|+|||| .|+..|+.++|++|++++ .+ ++.. |..|.
T Consensus        42 ~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~-g~~~~~~-~~~g~t~L~-~A~~~g~~~~v~~Ll~~g-a~-~~~~-~~~g~  114 (437)
T 1n11_A           42 VSNVKVETPLHMAARAGHTEVAKYLL-QN-KAKVNAK-AKDDQTPLH-CAARIGHTNMVKLLLENN-AN-PNLA-TTAGH  114 (437)
T ss_dssp             CSSSCCCCHHHHHHHHTCHHHHHHHH-HH-TCCSSCC-CTTSCCHHH-HHHHHTCHHHHHHHHHHT-CC-TTCC-CTTCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHH-hC-CCCCCCC-CCCCCCHHH-HHHHCCCHHHHHHHHhCC-CC-CCCC-CCCCC
Confidence            34556789999999999999999999 44 3445544 789999999 999999999999999994 33 6777 99999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchh
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFV  187 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t  187 (658)
                      ||||+|+..|+.+++++|++.+++.. ..+.           . |.||||+|+..|+.+++++|++++++ +..+..|.|
T Consensus       115 t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~-----------~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  181 (437)
T 1n11_A          115 TPLHIAAREGHVETVLALLEKEASQA-CMTK-----------K-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT  181 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSC-CCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCc-CCCC-----------C-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence            99999999999999999999988753 3344           5 99999999999999999999999885 567888999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENV  267 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  267 (658)
                      |||+|+..|+.+++++|++++.+ ....+.+|.||||+|+..+       +..+++.++.....++..+.....      
T Consensus       182 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~-------~~~~~~~Ll~~g~~~~~~~~~g~t------  247 (437)
T 1n11_A          182 PLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQN-------QVEVARSLLQYGGSANAESVQGVT------  247 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCTTCCCTTCCC------
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCC------
Confidence            99999999999999999988554 4667778999999999885       346677776655433322111100      


Q ss_pred             CCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHH-HHhhhhhHHHHHHHHHHHHhhhhhhc
Q 006173          268 GGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSI-RDAKIIHEQTLEILRIMCAGAVDILN  346 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~  346 (658)
                        .+. +........++.+++.........+.               .+...+ ......+   .++++.+.+..    .
T Consensus       248 --~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~---------------~g~t~L~~A~~~~~---~~~~~~Ll~~g----~  302 (437)
T 1n11_A          248 --PLH-LAAQEGHAEMVALLLSKQANGNLGNK---------------SGLTPLHLVAQEGH---VPVADVLIKHG----V  302 (437)
T ss_dssp             --HHH-HHHHTTCHHHHHHHHTTTCCTTCCCT---------------TCCCHHHHHHHHTC---HHHHHHHHHHT----C
T ss_pred             --HHH-HHHHCCCHHHHHHHHhcCCCCCCCCC---------------CCCCHHHHHHHcCC---HHHHHHHHhCC----c
Confidence              000 00111223444555443321111100               000011 1111222   23444444433    3


Q ss_pred             chhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccC
Q 006173          347 THEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEK  426 (658)
Q Consensus       347 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~  426 (658)
                      +.+.++..|+||||+|+..|+.++|++|++++ .+ ++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.+
T Consensus       303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad-~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga----~~~~~~~~  376 (437)
T 1n11_A          303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-AD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----SPNEVSSD  376 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCSS
T ss_pred             cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CC-CCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC----CCCCCCCC
Confidence            44557788999999999999999999999999 65 56789999999999999999999999999998    77999999


Q ss_pred             CCchhhhHhhcCCC
Q 006173          427 RINILHIAAMSVPS  440 (658)
Q Consensus       427 G~TpLHlAa~~g~~  440 (658)
                      |+||||+|++.|+.
T Consensus       377 g~t~l~~A~~~g~~  390 (437)
T 1n11_A          377 GTTPLAIAKRLGYI  390 (437)
T ss_dssp             SCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCcH
Confidence            99999999999983

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.3e-39  Score=334.75  Aligned_cols=283  Identities=12%  Similarity=0.059  Sum_probs=236.7

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCCh
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSE  109 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~T  109 (658)
                      ...++.++||.||+.||.+.|+.|| +. +.+++.+.+..|+|||| +||..|+.++|++||+++ .+ ++.+ |..+.+
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL-~~-Gadvn~~~~~~g~TpLh-~A~~~g~~~iv~~Ll~~g-a~-~~~~-~~~~~~   94 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLL-EG-GANVNFQEEEGGWTPLH-NAVQMSREDIVELLLRHG-AD-PVLR-KKNGAT   94 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH-HH-TCCTTCCCTTTCCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTCCC
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHH-HC-CCCCCccCCCCCcCHHH-HHHHcCCHHHHHHHHHcC-Cc-hhhh-ccCCCc
Confidence            3456889999999999999999999 54 45566664567999999 999999999999999995 33 6778 999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC----------
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP----------  179 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~----------  179 (658)
                      |+|.++..++.+++..+++.++++ +..+.           . |.||||+|+..|+.+++++|++++++.          
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~-----------~-g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~  161 (337)
T 4g8k_A           95 PFILAAIAGSVKLLKLFLSKGADV-NECDF-----------Y-GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  161 (337)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCT-TCBCT-----------T-CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---
T ss_pred             hhHHHHhcccchhhHHhhhccchh-hhhcc-----------C-CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccc
Confidence            999999999999999999998886 44455           6 999999999999999999999998731          


Q ss_pred             -CCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCC
Q 006173          180 -LDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNP  258 (658)
Q Consensus       180 -~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~  258 (658)
                       ..+..|.||||+|+..|+.+++++||++.+..++.+|..|.||||.++..+..                          
T Consensus       162 ~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~--------------------------  215 (337)
T 4g8k_A          162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD--------------------------  215 (337)
T ss_dssp             --CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT--------------------------
T ss_pred             ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc--------------------------
Confidence             35667999999999999999999999887777889999999999987765311                          


Q ss_pred             CCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHH
Q 006173          259 HPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMC  338 (658)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  338 (658)
                                .+                                                           ...+++.++
T Consensus       216 ----------~~-----------------------------------------------------------~~~i~~lLl  226 (337)
T 4g8k_A          216 ----------SD-----------------------------------------------------------VEAITHLLL  226 (337)
T ss_dssp             ----------TT-----------------------------------------------------------HHHHHHHHH
T ss_pred             ----------cc-----------------------------------------------------------HHHHHHHHH
Confidence                      00                                                           001222222


Q ss_pred             HhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccc
Q 006173          339 AGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPF  418 (658)
Q Consensus       339 ~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~  418 (658)
                          ....+.+.+|..|+||||+|+..|+.++++.|++.. ...++.+|.+|+||||+|+++|+.++|++|++.|+    
T Consensus       227 ----~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~-~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA----  297 (337)
T 4g8k_A          227 ----DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA----  297 (337)
T ss_dssp             ----HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC----
T ss_pred             ----HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc-CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----
Confidence                233445567888999999999999999999999986 66788899999999999999999999999999998    


Q ss_pred             cccccccCCCchhhhHhhcCCC
Q 006173          419 FMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       419 ~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ++|     +.||||+|++.|+.
T Consensus       298 d~n-----~~~~L~~A~~~~~~  314 (337)
T 4g8k_A          298 STD-----CGDLVMTARRNYDH  314 (337)
T ss_dssp             SST-----TCCHHHHHHHTTCH
T ss_pred             CCC-----CCCHHHHHHHcCCH
Confidence            444     45699999999984

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.3e-39  Score=323.74  Aligned_cols=270  Identities=13%  Similarity=0.061  Sum_probs=227.8

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      .++.++||.|+..|+.+.++.++ +.. ..++...+..|+|||| .|+..|+.++|++|++.+ .+ ++.. |..|.|||
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll-~~g-~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L   76 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLL-EGG-ANVNFQEEEGGWTPLH-NAVQMSREDIVELLLRHG-AD-PVLR-KKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH-HTT-CCTTCCCTTTCCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTCCCHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHH-HcC-CCcccccCCCCCcHHH-HHHHcCCHHHHHHHHHcC-CC-Cccc-CCCCCCHH
Confidence            56889999999999999999999 544 4455555778999999 999999999999999994 33 6777 99999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC-CC---------
Q 006173          112 EYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP-LD---------  181 (658)
Q Consensus       112 h~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~~---------  181 (658)
                      |+|+..|+.+++++|+++++++ +..+.           . |.||||+|+..|+.+++++|++++++. ..         
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  143 (285)
T 1wdy_A           77 LLAAIAGSVKLLKLFLSKGADV-NECDF-----------Y-GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER  143 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCBCT-----------T-CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CccCc-----------c-cCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHh
Confidence            9999999999999999998886 44444           6 999999999999999999999999852 22         


Q ss_pred             -CCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCC
Q 006173          182 -GRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHP  260 (658)
Q Consensus       182 -~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~  260 (658)
                       +..|.||||+|+..|+.++++.|++..+...+.+|..|.||||+|+..+....                          
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~--------------------------  197 (285)
T 1wdy_A          144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD--------------------------  197 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT--------------------------
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch--------------------------
Confidence             78899999999999999999999998777778899999999999998853200                          


Q ss_pred             CCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHh
Q 006173          261 HPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAG  340 (658)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  340 (658)
                                                                                           ..++++.+.+.
T Consensus       198 ---------------------------------------------------------------------~~~i~~~Ll~~  208 (285)
T 1wdy_A          198 ---------------------------------------------------------------------VEAITHLLLDH  208 (285)
T ss_dssp             ---------------------------------------------------------------------HHHHHHHHHHT
T ss_pred             ---------------------------------------------------------------------HHHHHHHHHHc
Confidence                                                                                 01222333332


Q ss_pred             hhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccc
Q 006173          341 AVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFM  420 (658)
Q Consensus       341 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~i  420 (658)
                          ..+.+.+|..|.||||+|+..|+.+++++|++.. +..++.+|..|+||||+|+..|+.+++++|++.|+    ++
T Consensus       209 ----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga----~~  279 (285)
T 1wdy_A          209 ----GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA----ST  279 (285)
T ss_dssp             ----TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS-SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS----CS
T ss_pred             ----CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC----CC
Confidence                2344457788999999999999999999999955 55678889999999999999999999999999998    56


Q ss_pred             cccc
Q 006173          421 ANID  424 (658)
Q Consensus       421 n~~D  424 (658)
                      +.+|
T Consensus       280 ~~~d  283 (285)
T 1wdy_A          280 DCGD  283 (285)
T ss_dssp             CCSS
T ss_pred             Cccc
Confidence            6666

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2e-38  Score=331.55  Aligned_cols=284  Identities=11%  Similarity=0.053  Sum_probs=232.2

Q ss_pred             hhhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCC
Q 006173           26 EKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARD  105 (658)
Q Consensus        26 ~~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~  105 (658)
                      .....+..+.++||.||+.|+.+.++.++ ...+..++.+ +..|+|||| .|+..|+.++|++|++.+ .+ ++.. |.
T Consensus        16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~-d~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~   89 (351)
T 3utm_A           16 KAVLTGEYKKDELLEAARSGNEEKLMALL-TPLNVNCHAS-DGRKSTPLH-LAAGYNRVRIVQLLLQHG-AD-VHAK-DK   89 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHC-CTTTTTCCCS-STTCCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CT
T ss_pred             eeeeeccccchhHHHHHHcCCHHHHHHHH-HhcCCCcccC-CCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-CCcc-CC
Confidence            33445566889999999999999999999 6555555544 889999999 999999999999999994 34 7888 99


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCc
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQ  184 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~  184 (658)
                      .|.||||+|+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ...+..
T Consensus        90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  156 (351)
T 3utm_A           90 GGLVPLHNACSYGHYEVTELLLKHGACV-NAMDL-----------W-QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH  156 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence            9999999999999999999999999886 44455           6 99999999999999999999999985 577888


Q ss_pred             chhHHHHHHh---------------------cCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhh
Q 006173          185 GFVLLKFLID---------------------SNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWK  243 (658)
Q Consensus       185 g~t~Lh~A~~---------------------~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~  243 (658)
                      |.+++|.|+.                     .+..+.+..++.... .....+..|.||||+|+..+..           
T Consensus       157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~-----------  224 (351)
T 3utm_A          157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHP-----------  224 (351)
T ss_dssp             SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCST-----------
T ss_pred             CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhCc-----------
Confidence            9998887654                     444555555555432 3344677899999999988421           


Q ss_pred             hhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHh
Q 006173          244 RLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDA  323 (658)
Q Consensus       244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  323 (658)
                                                                                                      
T Consensus       225 --------------------------------------------------------------------------------  224 (351)
T 3utm_A          225 --------------------------------------------------------------------------------  224 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCH
Q 006173          324 KIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRRE  403 (658)
Q Consensus       324 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  403 (658)
                           ...++++.+.+.    ..+.+.+|..|+||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+.+|+.
T Consensus       225 -----~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~-~n~~d~~g~t~L~~A~~~~~~  293 (351)
T 3utm_A          225 -----KRKQVAELLLRK----GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AK-MNALDSLGQTALHRAALAGHL  293 (351)
T ss_dssp             -----THHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred             -----cHHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC-CCCcCCCCCCHHHHHHHcCcH
Confidence                 011223333332    2334456788999999999999999999999998 65 567899999999999999999


Q ss_pred             hHHHHHhcCCCcccccccccccCCCchhhhHh
Q 006173          404 KVFNIIFNFPNIYPFFMANIDEKRINILHIAA  435 (658)
Q Consensus       404 ~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  435 (658)
                      +++++|++.|+    +++.+|.+|+||||+|.
T Consensus       294 ~~v~~Ll~~ga----d~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          294 QTCRLLLSYGS----DPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHHHHHHTTC----CTTCCCTTSCCHHHHSC
T ss_pred             HHHHHHHHcCC----CCCCcCCCCCChhhhhh
Confidence            99999999998    77999999999999995

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=316.32  Aligned_cols=243  Identities=11%  Similarity=0.026  Sum_probs=187.4

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcc----------cccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCcccccc
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPN----------ALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQN  101 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~----------~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~  101 (658)
                      .++.++||.|+..|+.+.+..++ ...+.          .++ ..+.+|+|||| .||..|+.++|+.|++.+ .+ ++.
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~g~t~L~-~Aa~~g~~~~v~~Ll~~g-~~-~~~   87 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSK-PAGPRDFPGIRLLSNPLM-GDAVSDWSPMH-EAAIHGHQLSLRNLISQG-WA-VNI   87 (285)
T ss_dssp             ------------------------------CCSEECCCCTTC-SSSCCSCCHHH-HHHHTTCHHHHHHHHHTT-CC-SCE
T ss_pred             hHHHHHHHHHhhcCCCCCcccCC-CCccccccchhhhhCccc-CCCccCCCHHH-HHHHcCCHHHHHHHHHCC-CC-CCC
Confidence            45789999999999998888866 33222          122 23788999999 999999999999999984 33 788


Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCC
Q 006173          102 FARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLD  181 (658)
Q Consensus       102 ~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~  181 (658)
                      + |..|.||||+||..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++...
T Consensus        88 ~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (285)
T 3d9h_A           88 I-TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTA-----------D-WHTPLFNACVSGSWDCVNLLLQHGASVQP  153 (285)
T ss_dssp             E-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCT-----------T-CCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             c-CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCC-----------C-CCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence            8 999999999999999999999999998875 44455           6 99999999999999999999999997666


Q ss_pred             CCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCC
Q 006173          182 GRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPH  261 (658)
Q Consensus       182 ~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~  261 (658)
                      +..|.||||+|+..|+.++++.|++.+.+. +                                                
T Consensus       154 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~------------------------------------------------  184 (285)
T 3d9h_A          154 ESDLASPIHEAARRGHVECVNSLIAYGGNI-D------------------------------------------------  184 (285)
T ss_dssp             SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-T------------------------------------------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C------------------------------------------------
Confidence            777999999999999999999999874322 1                                                


Q ss_pred             CCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhh
Q 006173          262 PPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGA  341 (658)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  341 (658)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (285)
T 3d9h_A          185 --------------------------------------------------------------------------------  184 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCccccccc
Q 006173          342 VDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMA  421 (658)
Q Consensus       342 ~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in  421 (658)
                              .+|..|.||||+|+..|+.+++++|++.+ .+..  .|..|+||||+|+..++.+++++|++.|+    +++
T Consensus       185 --------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~  249 (285)
T 3d9h_A          185 --------HKISHLGTPLYLACENQQRACVKKLLESG-ADVN--QGKGQDSPLHAVVRTASEELACLLMDFGA----DTQ  249 (285)
T ss_dssp             --------CCBTTTBCHHHHHHHTTCHHHHHHHHHTT-CCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTC----CTT
T ss_pred             --------CcCCCCCCHHHHHHHcCcHHHHHHHHHCC-CCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCC
Confidence                    13445789999999999999999999998 7644  48899999999999999999999999988    789


Q ss_pred             ccccCCCchhhhHhhc
Q 006173          422 NIDEKRINILHIAAMS  437 (658)
Q Consensus       422 ~~D~~G~TpLHlAa~~  437 (658)
                      .+|.+|+||||+|+..
T Consensus       250 ~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          250 AKNAEGKRPVELVPPE  265 (285)
T ss_dssp             CCCTTSCCGGGGSCTT
T ss_pred             CcCCCCCCHHHHhcCc
Confidence            9999999999999943

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-37  Score=324.50  Aligned_cols=307  Identities=13%  Similarity=0.078  Sum_probs=235.0

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +..|.|+|| .||..|+.+.|+.|+...+ ..++.. |..|.||||+||..|+.++|++|++.++++ +..+.       
T Consensus        21 ~~~~~~~L~-~A~~~g~~~~v~~ll~~~~-~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-------   89 (351)
T 3utm_A           21 GEYKKDELL-EAARSGNEEKLMALLTPLN-VNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDK-------   89 (351)
T ss_dssp             HHHHHHHHH-HHHHHTCHHHHHHHCCTTT-TTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-------
T ss_pred             ccccchhHH-HHHHcCCHHHHHHHHHhcC-CCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-------
Confidence            567899999 9999999999999998733 447888 999999999999999999999999999885 44555       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHH
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILES  225 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~  225 (658)
                          . |.||||+|+..|+.+++++|++++++ +..|..|.||||+|+..|+.+++++|++++.+ .+..+..|.||+++
T Consensus        90 ----~-g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~  163 (351)
T 3utm_A           90 ----G-GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDM  163 (351)
T ss_dssp             ----T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             ----C-CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHH
Confidence                6 99999999999999999999999985 67889999999999999999999999998544 57788999999998


Q ss_pred             HhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHH
Q 006173          226 LSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFV  305 (658)
Q Consensus       226 Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (658)
                      |+..+..          +.+                                       .+.+                 
T Consensus       164 a~~~~~~----------~~~---------------------------------------~~~~-----------------  177 (351)
T 3utm_A          164 APTPELR----------ERL---------------------------------------TYEF-----------------  177 (351)
T ss_dssp             CSSHHHH----------HHH---------------------------------------HHHH-----------------
T ss_pred             HhhhhhH----------HHH---------------------------------------Hhhh-----------------
Confidence            8765210          000                                       0000                 


Q ss_pred             HHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHh---CcHHHHHHHHhhcCCCc
Q 006173          306 LWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARL---GIYEIVMGIMNSYFPWS  382 (658)
Q Consensus       306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~---G~~~~v~~Ll~~~~~~~  382 (658)
                            ..   ...........   ...+..+.    .........+..|.||||+|+..   ++.+++++|++.+ .+ 
T Consensus       178 ------~~---~~~~~~~~~~~---~~~~~~~l----~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~-  239 (351)
T 3utm_A          178 ------KG---HSLLQAAREAD---LAKVKKTL----ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-AN-  239 (351)
T ss_dssp             ------HH---HHHHHHHHTTC---HHHHHHHT----TTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CC-
T ss_pred             ------cc---cHHHHHHHhcc---HHHHHHHH----HhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CC-
Confidence                  00   00000000000   01111111    11111122567799999999999   6689999999998 65 


Q ss_pred             ccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHh
Q 006173          383 LEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVEN  462 (658)
Q Consensus       383 ~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~  462 (658)
                      ++.+|..|+||||+|+..|+.+++++|++.|+    ++|.+|..|+||||+|++.|+.+.+           .+.  ++.
T Consensus       240 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~n~~d~~g~t~L~~A~~~~~~~~v-----------~~L--l~~  302 (351)
T 3utm_A          240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----KMNALDSLGQTALHRAALAGHLQTC-----------RLL--LSY  302 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHH-----------HHH--HHT
T ss_pred             cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCcHHHH-----------HHH--HHc
Confidence            56779999999999999999999999999998    7899999999999999999984211           111  111


Q ss_pred             hcCcchhhhccCCCCCchhhhHHHHHHHHHhh
Q 006173          463 CVHPTLQDQLNDKDKTPREVFTKEHEKLVEEG  494 (658)
Q Consensus       463 ~~~~~~~~~~n~~G~Tp~dl~~~~~~~l~~~~  494 (658)
                         ....+.+|++|+||++++.+...++..+.
T Consensus       303 ---gad~~~~~~~g~tal~~a~~~~~~~l~~~  331 (351)
T 3utm_A          303 ---GSDPSIISLQGFTAAQMGNEAVQQILSES  331 (351)
T ss_dssp             ---TCCTTCCCTTSCCHHHHSCHHHHHHHHHC
T ss_pred             ---CCCCCCcCCCCCChhhhhhHHHHHHHHhc
Confidence               12367899999999999987776666553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-38  Score=332.49  Aligned_cols=285  Identities=10%  Similarity=0.074  Sum_probs=205.4

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhhcCcc----------------------cccccccCCCCcHHHHhhhcCCChHHHHHH
Q 006173           33 DSYKQVTRYILENDWKGLEDYIMSKTPN----------------------ALTCIIVDQSSIFEFIVGIPDVPATLVDKL   90 (658)
Q Consensus        33 ~~~~~L~~A~~~G~~~~v~~ll~~~~~~----------------------~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~L   90 (658)
                      ....+|+.|+..|+.+.++.++ +....                      .+....+..|.|||| .|+..|+ ++++.|
T Consensus        36 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~-~Aa~~~~-~~~~~L  112 (373)
T 2fo1_E           36 SSQHSLLEASYDGYIKRQRNEL-QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLH-TEAAGSY-AITEPI  112 (373)
T ss_dssp             -----------------------------------------------------------CCCHHH-HHHHSSS-CCCSCC
T ss_pred             ccccccccccCCccccchhhhh-hhhccccCccccCCCCCccccccccccccccCCCCCCccHHH-HHhcCCc-hHHHHh
Confidence            4556677777777777666554 21110                      011234678999999 9999654 788887


Q ss_pred             HhcCCccccccccC-CCCChHHHHHHhcCCHHHHHHHH--------hcCCCCCcccccCCCCCCCcccCCCCCcHHHHHH
Q 006173           91 LSKVPRNCLQNFAR-DEGSEYMEYAVSTGKLNLITTLM--------GYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAA  161 (658)
Q Consensus        91 l~~~~~~~l~~~~d-~~G~TpLh~Aa~~G~~~iv~~Ll--------~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa  161 (658)
                      +..    .++.. | ..|+||||+||..|+.+++++|+        +.++++ +..+.           . |.||||+|+
T Consensus       113 ~~~----~~n~~-d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~-----------~-g~TpL~~A~  174 (373)
T 2fo1_E          113 TRE----SVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDC-----------D-ENTPLMLAV  174 (373)
T ss_dssp             STT----TTTTC-CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCT-----------T-SCCHHHHHH
T ss_pred             ccc----ccccc-CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCC-----------C-CCCHHHHHH
Confidence            653    36677 7 79999999999999999888877        566664 34444           6 999999999


Q ss_pred             HhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCC--CccccccCCCCcHhHHHhcCCCCCCCCCC
Q 006173          162 KAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHP--MIARADIGETGKILESLSKRPKAFASGSR  238 (658)
Q Consensus       162 ~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~--~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~  238 (658)
                      ..|+.++|++|++++++ ...+..|.||||+|+..|+.+++++|++...  ...+..|.+|.||||+|+..+..    ..
T Consensus       175 ~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~----~~  250 (373)
T 2fo1_E          175 LARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR----DQ  250 (373)
T ss_dssp             HHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST----TH
T ss_pred             HcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCc----ch
Confidence            99999999999999985 6789999999999999999999999998752  45577899999999999988521    01


Q ss_pred             cchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhH
Q 006173          239 LGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIK  318 (658)
Q Consensus       239 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  318 (658)
                      .                                                                               
T Consensus       251 ~-------------------------------------------------------------------------------  251 (373)
T 2fo1_E          251 V-------------------------------------------------------------------------------  251 (373)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             H-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhhhhhhc-----chhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChH
Q 006173          319 SIRDAKIIHEQTLEILRIMCAGAVDILN-----THEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDI  393 (658)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~  393 (658)
                                   ++++.+++.. ...+     ....+|..|.||||+|+..|+.+++++|++++ +..++.+|.+|+||
T Consensus       252 -------------~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~n~~d~~g~Tp  316 (373)
T 2fo1_E          252 -------------ASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-GSNKDKQDEDGKTP  316 (373)
T ss_dssp             -------------HHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS-CCCTTCCCTTCCCH
T ss_pred             -------------HHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc-CCCccCcCCCCCCH
Confidence                         1222222222 1111     11225678999999999999999999999998 77888899999999


Q ss_pred             HHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          394 FKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       394 Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ||+|+.+|+.+++++|++.|+    +++.+|.+|+||||+|++.|+.
T Consensus       317 L~~A~~~g~~~iv~~Ll~~ga----d~~~~d~~g~t~l~~A~~~g~~  359 (373)
T 2fo1_E          317 IMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQLAQANNHH  359 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC----CSSCCCSSSCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCC----CccCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999999998    7899999999999999999984

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.9e-36  Score=302.61  Aligned_cols=248  Identities=14%  Similarity=0.111  Sum_probs=208.6

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      +|+|||| .|+..|+.++|++|++.+ .+ ++...+..|.||||+|+..|+.+++++|++.++++ ...+.         
T Consensus         4 ~g~~~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~---------   70 (285)
T 1wdy_A            4 EDNHLLI-KAVQNEDVDLVQQLLEGG-AN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKK---------   70 (285)
T ss_dssp             HHHHHHH-HHHHTTCHHHHHHHHHTT-CC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT---------
T ss_pred             ccchHHH-HHHHcCCHHHHHHHHHcC-CC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC---------
Confidence            5789999 999999999999999995 34 33332778999999999999999999999998875 44444         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCcccc---------ccCC
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARA---------DIGE  218 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~---------~d~~  218 (658)
                        . |.||||+|+..|+.+++++|++++++ ...+..|.||||+|+..|+.+++++|++++.+....         .+..
T Consensus        71 --~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~  147 (285)
T 1wdy_A           71 --N-GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG  147 (285)
T ss_dssp             --T-CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred             --C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccC
Confidence              6 99999999999999999999999985 678999999999999999999999999986654322         1778


Q ss_pred             CCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchh
Q 006173          219 TGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSL  298 (658)
Q Consensus       219 g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (658)
                      |.||||+|+..++.                                                                  
T Consensus       148 g~t~L~~A~~~~~~------------------------------------------------------------------  161 (285)
T 1wdy_A          148 GATALMDAAEKGHV------------------------------------------------------------------  161 (285)
T ss_dssp             CCCHHHHHHHHTCH------------------------------------------------------------------
T ss_pred             CCcHHHHHHHcCCH------------------------------------------------------------------
Confidence            99999999988522                                                                  


Q ss_pred             HHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCc----HHHHHHH
Q 006173          299 RQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGI----YEIVMGI  374 (658)
Q Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~----~~~v~~L  374 (658)
                                                       ++++.+++.   ...+.+.+|..|.||||+|+..|+    .+++++|
T Consensus       162 ---------------------------------~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~L  205 (285)
T 1wdy_A          162 ---------------------------------EVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLL  205 (285)
T ss_dssp             ---------------------------------HHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH
T ss_pred             ---------------------------------HHHHHHHHh---cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHH
Confidence                                             122222221   022334467789999999999999    9999999


Q ss_pred             HhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhc-CCCcccccccccccCCCchhhhHhhcCCC
Q 006173          375 MNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFN-FPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       375 l~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ++++ .+ ++.+|..|+||||+|+..|+.+++++|++ .|+    +++.+|.+|+||||+|++.|+.
T Consensus       206 l~~g-~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~----~~~~~~~~g~t~l~~A~~~~~~  266 (285)
T 1wdy_A          206 LDHG-AD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             HHTT-CC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHcC-CC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC----CccccCCCCCcHHHHHHHcCcH
Confidence            9998 65 56779999999999999999999999999 666    7899999999999999999984

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.2e-36  Score=302.35  Aligned_cols=251  Identities=10%  Similarity=0.034  Sum_probs=174.7

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhcCCc-cccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCC
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSKVPR-NCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDP  144 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~-~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~  144 (658)
                      .|.+|+|||| .||..|+.++|++|++.+.. ..++.+ |..|+||||+||..|+.+++++|+++++++ +..+.     
T Consensus         5 ~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-----   76 (282)
T 1oy3_D            5 VTEDGDTALH-LAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAER-----   76 (282)
T ss_dssp             CCTTCCCHHH-HHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-----
T ss_pred             cCCCCCcHHH-HHHHcCCHHHHHHHHhcCCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-----
Confidence            3889999999 99999999999999988532 347888 999999999999999999999999999886 44555     


Q ss_pred             CCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC--------------CCCCcchhHHHHHHhcCcHHHHHHHHHhCCC
Q 006173          145 NIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP--------------LDGRQGFVLLKFLIDSNLFDMALALLKCHPM  210 (658)
Q Consensus       145 ~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~--------------~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~  210 (658)
                            . |.||||+|+..|+.+++++|+++++..              .....+.++++.+...+.......++.....
T Consensus        77 ------~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (282)
T 1oy3_D           77 ------G-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (282)
T ss_dssp             ------T-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             ------C-CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhh
Confidence                  6 999999999999999999999988731              2334566777777776665555555544455


Q ss_pred             ccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhh
Q 006173          211 IARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQK  290 (658)
Q Consensus       211 ~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (658)
                      ..+.+|..|.||||+|+..++.                                                          
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~----------------------------------------------------------  171 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDA----------------------------------------------------------  171 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCH----------------------------------------------------------
T ss_pred             cCCCcCCCCcCHHHHHHHcCCH----------------------------------------------------------
Confidence            6678899999999999998522                                                          


Q ss_pred             CCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhh-cCCCcHHHHHHHhCcHH
Q 006173          291 IPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQ-NVFKKPMFKAARLGIYE  369 (658)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~g~tpLh~Aa~~G~~~  369 (658)
                                                               ++++.+++..    .+.+.++ ..|+||||+|+..|+.+
T Consensus       172 -----------------------------------------~~v~~Ll~~g----~~~~~~~~~~g~tpL~~A~~~~~~~  206 (282)
T 1oy3_D          172 -----------------------------------------EMVRLLRDAG----ADLNKPEPTCGRTPLHLAVEAQAAS  206 (282)
T ss_dssp             -----------------------------------------HHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             -----------------------------------------HHHHHHHHcC----CCCCCCCCCCCcCHHHHHHHcCCHH
Confidence                                                     2222333222    2223344 34999999999999999


Q ss_pred             HHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          370 IVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       370 ~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ++++|++++ .+ ++.+|..|+||||+|+.+++.+++++|++.|+    +++.+|.+|.|||++|....+.
T Consensus       207 ~v~~Ll~~g-ad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          207 VLELLLKAG-AD-PTARMYGGRTPLGSALLRPNPILARLLRAHGA----PEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHHHHHHTT-CC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC----CCCCCC----------------
T ss_pred             HHHHHHHcC-CC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCC----CcCcCCCcccccccccCCcccc
Confidence            999999999 65 56789999999999999999999999999999    7899999999999999987653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.8e-36  Score=315.55  Aligned_cols=260  Identities=13%  Similarity=0.082  Sum_probs=210.0

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHH--------hcCCccccc
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLL--------SKVPRNCLQ  100 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll--------~~~~~~~l~  100 (658)
                      .++..+.+|||.|+..|+ +.++.++ ..   .++...+.+|+|||| .||..|+.++|+.|+        +. +. +++
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~-~~---~~n~~d~~~g~t~Lh-~Aa~~g~~~~v~~Ll~~~~~~ll~~-ga-~vn  160 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPIT-RE---SVNIIDPRHNRTVLH-WIASNSSAEKSEDLIVHEAKECIAA-GA-DVN  160 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCS-TT---TTTTCCCSSCCCHHH-HHHCTTCCSCCTTHHHHHHHHHHHT-CC-CTT
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhc-cc---cccccCCcCCCCHHH-HHHHCCCHHHHHHHHHHHHHHHHhc-CC-CCc
Confidence            456678999999999554 6666655 32   344443478999999 999999999998887        45 33 378


Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC---C
Q 006173          101 NFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT---R  177 (658)
Q Consensus       101 ~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~---~  177 (658)
                      .. |..|.||||+|+..|+.++|++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++   .
T Consensus       161 ~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~-----------~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  226 (373)
T 2fo1_E          161 AM-DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNK-----------S-ERSALHQAAANRDFGMMVYMLNSTKLKG  226 (373)
T ss_dssp             CC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-----------T-CCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             CC-CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCC-----------C-CCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            88 999999999999999999999999999886 44555           6 999999999999999999999997   3


Q ss_pred             -CCCCCCcchhHHHHHHhcC---cHHHHHHHHHhCCCccc-------cccCCCCcHhHHHhcCCCCCCCCCCcchhhhhh
Q 006173          178 -EPLDGRQGFVLLKFLIDSN---LFDMALALLKCHPMIAR-------ADIGETGKILESLSKRPKAFASGSRLGSWKRLL  246 (658)
Q Consensus       178 -~~~~~~~g~t~Lh~A~~~g---~~~iv~~LL~~~~~~~~-------~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i  246 (658)
                       ....|..|.||||+|+..+   +.+++++|++.+.+...       .+|..|.||||+|+..++.              
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~--------------  292 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM--------------  292 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH--------------
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH--------------
Confidence             4678999999999999998   89999999999765432       3677899999999998632              


Q ss_pred             cccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhh
Q 006173          247 YQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKII  326 (658)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  326 (658)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (373)
T 2fo1_E          293 --------------------------------------------------------------------------------  292 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHH
Q 006173          327 HEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVF  406 (658)
Q Consensus       327 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  406 (658)
                           ++++.+++..   ..+.+.+|..|+||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+.+|+.+++
T Consensus       293 -----~~v~~Ll~~~---~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad-~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          293 -----PIVKYLVGEK---GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-AS-VEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             -----HHHHHHHHHS---CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CC-SSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             -----HHHHHHHHhc---CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC-ccCCCCCCCCHHHHHHHcCCHHHH
Confidence                 2222232211   1334457788999999999999999999999998 65 567899999999999999999999


Q ss_pred             HHHhcCCC
Q 006173          407 NIIFNFPN  414 (658)
Q Consensus       407 ~~Ll~~~~  414 (658)
                      ++|++.++
T Consensus       363 ~~Ll~~~a  370 (373)
T 2fo1_E          363 DIFDRCRP  370 (373)
T ss_dssp             HHHHTTC-
T ss_pred             HHHHhcCc
Confidence            99999976

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-35  Score=313.30  Aligned_cols=269  Identities=10%  Similarity=-0.006  Sum_probs=214.5

Q ss_pred             hhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCC
Q 006173           27 KIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDE  106 (658)
Q Consensus        27 ~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~  106 (658)
                      .+..+..+++|||.||..|+.+.++.|+ +. +..++.+ +..|+|||| +||..|+.++|++|++.+.    +.. +.+
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll-~~-g~~~~~~-d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~----~~~-~~~   83 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLI-ET-GVSPTIQ-NRFGCTALH-LACKFGCVDTAKYLASVGE----VHS-LWH   83 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHH-HT-TCCTTCC-CTTCCCHHH-HHHHHCCHHHHHHHHHHCC----CCC-CBT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHH-Hc-CCCcccc-CCCCCcHHH-HHHHcCCHHHHHHHHHCCC----Ccc-ccC
Confidence            3455678999999999999999999999 44 4445544 889999999 9999999999999999954    233 568


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhc----CCCCCccccc------CCCCCCCcccCCCCCcHHHHHHHhC--cHHHHHHhcc
Q 006173          107 GSEYMEYAVSTGKLNLITTLMGY----NEELPNIKVE------KKDDPNIKDEEKDDLLPVHMAAKAG--KRDAVRHLLP  174 (658)
Q Consensus       107 G~TpLh~Aa~~G~~~iv~~Ll~~----~~~l~~~~~~------~~~d~~~~~~~~~G~TpLh~Aa~~g--~~~iv~~Ll~  174 (658)
                      |.||||+|+..|+.+++++|++.    +.+.......      ...+++.++. . |.||||+|+..|  +.++|++|++
T Consensus        84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC-K-GQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE-S-CCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC-C-CCCHHHHHHHcCCchHHHHHHHHH
Confidence            99999999999999999999998    5543221000      0011222333 6 999999999999  9999999999


Q ss_pred             CCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhccccccc
Q 006173          175 KTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQ  253 (658)
Q Consensus       175 ~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~  253 (658)
                      ++++ +..|..|.||||+|+..|+.+++++|++.+++....                                       
T Consensus       162 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------------------------------------  202 (364)
T 3ljn_A          162 LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL---------------------------------------  202 (364)
T ss_dssp             HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSC---------------------------------------
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc---------------------------------------
Confidence            9985 678999999999999999999999999986542000                                       


Q ss_pred             ccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHH
Q 006173          254 EEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEI  333 (658)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  333 (658)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (364)
T 3ljn_A          203 --------------------------------------------------------------------------------  202 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCC
Q 006173          334 LRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFP  413 (658)
Q Consensus       334 l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  413 (658)
                                   +.+.+|..|+||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..|+.+++++|++.+
T Consensus       203 -------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          203 -------------RLDYANKQGNSHLHWAILINWEDVAMRFVEMG-ID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             -------------CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             -------------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence                         00114556889999999999999999999998 66 5678999999999999999999999999997


Q ss_pred             Cccc--------ccccccccCCCchhhhHhhcCCC
Q 006173          414 NIYP--------FFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       414 ~~~~--------~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      +...        ......|..|+|||++|+..|+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~  302 (364)
T 3ljn_A          268 DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK  302 (364)
T ss_dssp             CHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred             CchhhhcCcccCcccccccccccccchhhhhccCH
Confidence            6321        11223788999999999988863

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1e-35  Score=296.72  Aligned_cols=220  Identities=13%  Similarity=0.102  Sum_probs=160.4

Q ss_pred             cccccCCCCChHHHHHHhcC-------------CHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCc
Q 006173           99 LQNFARDEGSEYMEYAVSTG-------------KLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGK  165 (658)
Q Consensus        99 l~~~~d~~G~TpLh~Aa~~G-------------~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~  165 (658)
                      ++.+ |.+|+||||+|+..|             +.++++.|++.++++....+.           . |+||||+|+..|+
T Consensus         3 vn~~-d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~-----------~-g~t~L~~A~~~g~   69 (253)
T 1yyh_A            3 VNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR-----------T-GETALHLAARYSR   69 (253)
T ss_dssp             --------------------------------------------------CCCT-----------T-SCCHHHHHHHTTC
T ss_pred             CCCC-CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC-----------C-CCcHHHHHHHcCC
Confidence            5566 788888888888766             899999999999988666666           6 9999999999999


Q ss_pred             HHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhh
Q 006173          166 RDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKR  244 (658)
Q Consensus       166 ~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~  244 (658)
                      .++|++|++++++ ...|..|.||||+|+..|+.++++.|++.++...+.+|.+|.||||+|+..++.       .    
T Consensus        70 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~----  138 (253)
T 1yyh_A           70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE-------G----  138 (253)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS-------S----
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH-------H----
Confidence            9999999999985 678899999999999999999999999998877888999999999999988532       1    


Q ss_pred             hhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhh
Q 006173          245 LLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAK  324 (658)
Q Consensus       245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  324 (658)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (253)
T 1yyh_A          139 --------------------------------------------------------------------------------  138 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHh
Q 006173          325 IIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREK  404 (658)
Q Consensus       325 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  404 (658)
                              +++.+++    ...+.+.+|..|+||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..|+.+
T Consensus       139 --------~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~-~~~~~~~g~tpL~~A~~~~~~~  204 (253)
T 1yyh_A          139 --------MLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-AN-KDMQNNREETPLFLAAREGSYE  204 (253)
T ss_dssp             --------HHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             --------HHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC-CCCcCCCCCCHHHHHHHCCCHH
Confidence                    1112222    22233446778999999999999999999999998 65 5677999999999999999999


Q ss_pred             HHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          405 VFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       405 iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ++++|++.|+    +++.+|..|+||||+|++.|+.
T Consensus       205 ~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          205 TAKVLLDHFA----NRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHcCC----CccccccCCCCHHHHHHHcCCH
Confidence            9999999998    7789999999999999999984

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.2e-35  Score=285.41  Aligned_cols=212  Identities=15%  Similarity=0.205  Sum_probs=182.0

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcC--CCCCcccccCCCCCCCc
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYN--EELPNIKVEKKDDPNIK  147 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~--~~l~~~~~~~~~d~~~~  147 (658)
                      |+|||| .||..|+.++|+.|++. .++..+.. |..|.||||+|+..|+.+++++|++.+  +++....+.        
T Consensus         2 g~t~L~-~A~~~g~~~~v~~Ll~~-~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------   70 (228)
T 2dzn_A            2 SNYPLH-QACMENEFFKVQELLHS-KPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD--------   70 (228)
T ss_dssp             -CCHHH-HHHHTTCHHHHHHHHHH-CGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT--------
T ss_pred             CccHHH-HHHHhCCHHHHHHHHhc-CccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC--------
Confidence            789999 99999999999999999 44546667 999999999999999999999999998  443332444        


Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHhccCC--CC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhH
Q 006173          148 DEEKDDLLPVHMAAKAGKRDAVRHLLPKT--RE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILE  224 (658)
Q Consensus       148 ~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~--~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh  224 (658)
                         . |.||||+|+..|+.+++++|++++  ++ ...+..|.||||+|+..|+.++++.|++++.+. +.          
T Consensus        71 ---~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~----------  135 (228)
T 2dzn_A           71 ---S-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI----------  135 (228)
T ss_dssp             ---T-SCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CC----------
T ss_pred             ---C-CCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cc----------
Confidence               5 999999999999999999999998  43 577888999999999999999999999874322 11          


Q ss_pred             HHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHH
Q 006173          225 SLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKF  304 (658)
Q Consensus       225 ~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (658)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (228)
T 2dzn_A          136 --------------------------------------------------------------------------------  135 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccc
Q 006173          305 VLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLE  384 (658)
Q Consensus       305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~  384 (658)
                                                                    +|..|.||||+|+..|+.+++++|++.+ +..++
T Consensus       136 ----------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~  168 (228)
T 2dzn_A          136 ----------------------------------------------KDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVN  168 (228)
T ss_dssp             ----------------------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTT-CCCSC
T ss_pred             ----------------------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcC-ccccc
Confidence                                                          3345889999999999999999999999 88888


Q ss_pred             ccccCCChHHHHHHHhCCHhHHHHHh-cCCCcccccccccccCCCchhhhHhhcC
Q 006173          385 FKNKDGYDIFKVAVEHRREKVFNIIF-NFPNIYPFFMANIDEKRINILHIAAMSV  438 (658)
Q Consensus       385 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~~~~~~~~in~~D~~G~TpLHlAa~~g  438 (658)
                      .+|..|+||||+|+..|+.+++++|+ +.|+    +++.+|.+|+||||+|++.+
T Consensus       169 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga----~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC----CSCCBCTTSCBGGGGCSSTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----CCCccCCCCCcHHHHHHHHH
Confidence            89999999999999999999999999 7887    78999999999999998653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7e-36  Score=305.44  Aligned_cols=264  Identities=13%  Similarity=0.112  Sum_probs=208.2

Q ss_pred             HHHHhCCHHHHHHHHhhcCccc-------ccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHH
Q 006173           40 RYILENDWKGLEDYIMSKTPNA-------LTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYME  112 (658)
Q Consensus        40 ~A~~~G~~~~v~~ll~~~~~~~-------~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh  112 (658)
                      .++.+|..+.++.++ ......       .....+.+|.|||| .||..|+.++|+.|++.+ .+ ++.. |..|.||||
T Consensus         4 ~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~l~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~   78 (299)
T 1s70_B            4 ADAKQKRNEQLKRWI-GSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERG-AD-INYA-NVDGLTALH   78 (299)
T ss_dssp             HHHHHHHHHHHHHHH-HTTTSSCCSCCCCSCCCCEECHHHHHH-HHHHHTCHHHHHHHHHHC-CC-TTCB-CTTCCBHHH
T ss_pred             hHHHHHHHHHHHHHH-ccccccccccccCcccccccCCccHHH-HHHHcCCHHHHHHHHHcC-CC-Cccc-CCCCCCHHH
Confidence            468888889999988 433221       11123456789999 999999999999999994 33 7788 999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHH
Q 006173          113 YAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKF  191 (658)
Q Consensus       113 ~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~  191 (658)
                      +||..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.++|++|++++++ ...+..|.||||+
T Consensus        79 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~-----------~-g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  145 (299)
T 1s70_B           79 QACIDDNVDMVKFLVENGANI-NQPDN-----------E-GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI  145 (299)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCCCC-----------C-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence            999999999999999998886 44455           6 99999999999999999999999985 6788999999999


Q ss_pred             HHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCch
Q 006173          192 LIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDL  271 (658)
Q Consensus       192 A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  271 (658)
                      |+..++.++++.++...+......+..+.++++                                               
T Consensus       146 A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-----------------------------------------------  178 (299)
T 1s70_B          146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIML-----------------------------------------------  178 (299)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred             HHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH-----------------------------------------------
Confidence            999999999999887644332221111111111                                               


Q ss_pred             hhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhh
Q 006173          272 EKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEA  351 (658)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  351 (658)
                                                                                  ..+..+...   ........
T Consensus       179 ------------------------------------------------------------~~~~~~l~~---~~~~~~~~  195 (299)
T 1s70_B          179 ------------------------------------------------------------RDARQWLNS---GHINDVRH  195 (299)
T ss_dssp             ------------------------------------------------------------HHHHHHHHH---TCCCCCCC
T ss_pred             ------------------------------------------------------------HHHHHHHhc---cCcchhhh
Confidence                                                                        001111111   11122235


Q ss_pred             hcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchh
Q 006173          352 QNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINIL  431 (658)
Q Consensus       352 ~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  431 (658)
                      +..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|..|+|||
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l  269 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQAR-YD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAF  269 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTT-CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTT
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcC-CC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC----CCCCcCCCCCCHH
Confidence            667999999999999999999999998 65 56789999999999999999999999999998    7899999999999


Q ss_pred             hhHhhc
Q 006173          432 HIAAMS  437 (658)
Q Consensus       432 HlAa~~  437 (658)
                      |+|++.
T Consensus       270 ~~A~~~  275 (299)
T 1s70_B          270 DVADED  275 (299)
T ss_dssp             TSCCSG
T ss_pred             HHHHHH
Confidence            999754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7e-35  Score=290.64  Aligned_cols=228  Identities=15%  Similarity=0.147  Sum_probs=129.2

Q ss_pred             hhhhhhHHHHHHHHhC-------------CHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCc
Q 006173           30 KDIDSYKQVTRYILEN-------------DWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPR   96 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G-------------~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~   96 (658)
                      .+.+++||||.|+..|             +.+.++.++ +.. ..++...+.+|+|||| .||..|+.++|++|++.+ .
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll-~~g-~~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~   81 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQG-ASLHNQTDRTGETALH-LAARYSRSDAAKRLLEAS-A   81 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHH-HHHHTTCHHHHHHHHHTT-C
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHH-Hcc-CCcccccCCCCCcHHH-HHHHcCCHHHHHHHHHcC-C
Confidence            3445666666666655             555666655 322 2232333555666666 666666666666666652 2


Q ss_pred             cccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173           97 NCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus        97 ~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      + ++.. |..|.||||+|+..|+.+++++|++.++......+.           . |.||||+|+..|+.+++++|++++
T Consensus        82 ~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g  147 (253)
T 1yyh_A           82 D-ANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-----------D-GTTPLILAARLAVEGMLEDLINSH  147 (253)
T ss_dssp             C-TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-----------T-CCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred             C-CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-----------C-CCcHHHHHHHcChHHHHHHHHHcC
Confidence            2 4455 566666666666666666666666655533334443           4 666666666666666666666665


Q ss_pred             CC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhccccccccc
Q 006173          177 RE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEE  255 (658)
Q Consensus       177 ~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~  255 (658)
                      ++ +..|..|.||||+|+..|+.++++.|++.+.+                                             
T Consensus       148 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------------------------------------------  182 (253)
T 1yyh_A          148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---------------------------------------------  182 (253)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---------------------------------------------
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------------------
Confidence            53 44555566666666666666666666654221                                             


Q ss_pred             CCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHH
Q 006173          256 YNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILR  335 (658)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  335 (658)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (253)
T 1yyh_A          183 --------------------------------------------------------------------------------  182 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          336 IMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       336 ~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                                  .+.+|..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+++|+.+|+++|.....
T Consensus       183 ------------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          183 ------------KDMQNNREETPLFLAAREGSYETAKVLLDHF-AN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             ------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             ------------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CC-ccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence                        1224566889999999999999999999999 66 56789999999999999999999999998743

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.8e-34  Score=284.49  Aligned_cols=213  Identities=15%  Similarity=0.106  Sum_probs=173.9

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +.+|.|||| .||..|+.+++++|++.+ .+ ++.. |..|.||||+|+..|+.+++++|++.++++ +..+.       
T Consensus         8 ~~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-------   75 (237)
T 3b7b_A            8 HQNKRSPLH-AAAEAGHVDICHMLVQAG-AN-IDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDA-------   75 (237)
T ss_dssp             SCCSCCHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCT-------
T ss_pred             cCCCCCHHH-HHHHcCcHHHHHHHHHcC-CC-cCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCC-------
Confidence            677888888 888888888888888873 33 6666 778888888888888888888888877764 33444       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCC--CCCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhH
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR--EPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILE  224 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~--~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh  224 (658)
                          . |.||||+|+..|+.+++++|+++++  ....+..|.||||+|+..|+.++++.|++.+.+.             
T Consensus        76 ----~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------  137 (237)
T 3b7b_A           76 ----E-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-------------  137 (237)
T ss_dssp             ----T-SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------
T ss_pred             ----C-CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------
Confidence                5 8888888888888888888888874  3566777888888888888888888888764321             


Q ss_pred             HHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHH
Q 006173          225 SLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKF  304 (658)
Q Consensus       225 ~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (658)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (237)
T 3b7b_A          138 --------------------------------------------------------------------------------  137 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccc
Q 006173          305 VLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLE  384 (658)
Q Consensus       305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~  384 (658)
                                                                  +.++..|.||||+|+..|+.+++++|++.+ .+ ++
T Consensus       138 --------------------------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~-~~  171 (237)
T 3b7b_A          138 --------------------------------------------NIRDNEENICLHWAAFSGCVDIAEILLAAK-CD-LH  171 (237)
T ss_dssp             --------------------------------------------TCCCTTSCCHHHHHHHHCCHHHHHHHHTTT-CC-TT
T ss_pred             --------------------------------------------CccCCCCCCHHHHHHHCCCHHHHHHHHHcC-CC-CC
Confidence                                                        113456889999999999999999999999 66 56


Q ss_pred             ccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          385 FKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       385 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                      .+|..|+||||+|+..++.+++++|++.|+    +++.+|.+|+||||+|++.++
T Consensus       172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          172 AVNIHGDSPLHIAARENRYDCVVLFLSRDS----DVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHSCTTCH
T ss_pred             CcCCCCCCHHHHHHHhCCHhHHHHHHHcCC----CCCccCCCCCCHHHHHHHHHH
Confidence            679999999999999999999999999998    789999999999999999987

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=291.52  Aligned_cols=243  Identities=16%  Similarity=0.080  Sum_probs=180.1

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCC---------ccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCccc
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVP---------RNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIK  137 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~---------~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~  137 (658)
                      ...|.|+|| .|+..|+.+.+..++..++         ...++.. |..|+||||+||..|+.+++++|++.++++ +..
T Consensus        12 ~~~~~~~lH-~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~   88 (285)
T 3d9h_A           12 SGLVPRGSH-MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NII   88 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEE
T ss_pred             chHHHHHHH-HHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCc
Confidence            567999999 9999999777777655421         1235667 999999999999999999999999998885 555


Q ss_pred             ccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCcccccc
Q 006173          138 VEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADI  216 (658)
Q Consensus       138 ~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d  216 (658)
                      +.           . |+||||+|+..|+.++|++|++++++ ...|..|.||||+|+..|+.++++.|++.+.+..    
T Consensus        89 ~~-----------~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----  152 (285)
T 3d9h_A           89 TA-----------D-HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----  152 (285)
T ss_dssp             CT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----
T ss_pred             CC-----------C-CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC----
Confidence            55           6 99999999999999999999999985 6789999999999999999999999998743220    


Q ss_pred             CCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccc
Q 006173          217 GETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFG  296 (658)
Q Consensus       217 ~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (658)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (285)
T 3d9h_A          153 --------------------------------------------------------------------------------  152 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHh
Q 006173          297 SLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMN  376 (658)
Q Consensus       297 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~  376 (658)
                                                                            .+..|.||||+|+..|+.+++++|++
T Consensus       153 ------------------------------------------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~  178 (285)
T 3d9h_A          153 ------------------------------------------------------PESDLASPIHEAARRGHVECVNSLIA  178 (285)
T ss_dssp             ------------------------------------------------------CSCTTSCHHHHHHHHTCHHHHHHHHH
T ss_pred             ------------------------------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                                  01237799999999999999999999


Q ss_pred             hcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHH
Q 006173          377 SYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQW  456 (658)
Q Consensus       377 ~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~  456 (658)
                      .+ .+ ++.+|..|+||||+|+..|+.+++++|++.|+    ++| +|.+|+||||+|++.|+.+.+           .+
T Consensus       179 ~g-~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~-~~~~g~t~L~~A~~~~~~~~v-----------~~  240 (285)
T 3d9h_A          179 YG-GN-IDHKISHLGTPLYLACENQQRACVKKLLESGA----DVN-QGKGQDSPLHAVVRTASEELA-----------CL  240 (285)
T ss_dssp             TT-CC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC----CTT-CCBTTBCHHHHHHHTTCHHHH-----------HH
T ss_pred             CC-CC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC----CCC-CCCCCCCHHHHHHHcCCHHHH-----------HH
Confidence            98 65 56779999999999999999999999999988    556 499999999999999984211           11


Q ss_pred             HHHHHhhcCcchhhhccCCCCCchhhhHH
Q 006173          457 FKAVENCVHPTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       457 ~~~v~~~~~~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      .  ++   .....+.+|++|+||++++.+
T Consensus       241 L--l~---~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          241 L--MD---FGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             H--HH---TTCCTTCCCTTSCCGGGGSCT
T ss_pred             H--HH---CCCCCCCcCCCCCCHHHHhcC
Confidence            1  11   122367899999999999863

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.4e-34  Score=284.15  Aligned_cols=216  Identities=11%  Similarity=0.063  Sum_probs=184.3

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhcC--CccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSKV--PRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDD  143 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~--~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d  143 (658)
                      .|.+|+|||| .||..|+.++|+.|++..  ....++.. |..|.||||+|+..|+.+++++|++.++++ ...+.    
T Consensus         5 ~d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~----   77 (241)
T 1k1a_A            5 ADEDGDTPLH-IAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDR----   77 (241)
T ss_dssp             --CTTCCHHH-HHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT----
T ss_pred             cCCCCCcHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC----
Confidence            3889999999 999999999999999731  22347788 999999999999999999999999988875 44444    


Q ss_pred             CCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC----C-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCC
Q 006173          144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR----E-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGE  218 (658)
Q Consensus       144 ~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~----~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~  218 (658)
                             . |.||||+|+..|+.+++++|+++++    + ...+..|.||||+|+..|+.++++.|++.+.+...     
T Consensus        78 -------~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----  144 (241)
T 1k1a_A           78 -------H-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-----  144 (241)
T ss_dssp             -------T-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-----
T ss_pred             -------C-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-----
Confidence                   5 9999999999999999999999986    2 56788899999999999999999999987543210     


Q ss_pred             CCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchh
Q 006173          219 TGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSL  298 (658)
Q Consensus       219 g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (658)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (241)
T 1k1a_A          145 --------------------------------------------------------------------------------  144 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhh-cCCCcHHHHHHHhCcHHHHHHHHhh
Q 006173          299 RQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQ-NVFKKPMFKAARLGIYEIVMGIMNS  377 (658)
Q Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~g~tpLh~Aa~~G~~~~v~~Ll~~  377 (658)
                                                                          .+ ..|.||||+|+..|+.+++++|+++
T Consensus       145 ----------------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (241)
T 1k1a_A          145 ----------------------------------------------------VDIKSGRSPLIHAVENNSLSMVQLLLQH  172 (241)
T ss_dssp             ----------------------------------------------------CCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ----------------------------------------------------ccccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence                                                                11 3478999999999999999999999


Q ss_pred             cCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          378 YFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       378 ~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                      + .+ ++.+|..|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+..|+
T Consensus       173 g-~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          173 G-AN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             T-CC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCTTTTCSSHHH
T ss_pred             C-CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC----CCCCcCCCCCCHHHHHHhcCc
Confidence            8 65 56679999999999999999999999999998    778999999999999998876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.4e-33  Score=293.74  Aligned_cols=263  Identities=12%  Similarity=0.051  Sum_probs=211.7

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHH
Q 006173           33 DSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYME  112 (658)
Q Consensus        33 ~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh  112 (658)
                      .++||||.||..|+.+.|+.||  +++...+.+ +..+.+++| .++..++.+++..+++. ..+ ++.. |..|.||||
T Consensus        58 ~g~TpLh~A~~~g~~~iv~~Ll--~~ga~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~-d~~g~t~l~  130 (337)
T 4g8k_A           58 GGWTPLHNAVQMSREDIVELLL--RHGADPVLR-KKNGATPFI-LAAIAGSVKLLKLFLSK-GAD-VNEC-DFYGFTAFM  130 (337)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHH--HTTCCTTCC-CTTCCCHHH-HHHHHTCHHHHHHHHTT-TCC-TTCB-CTTCCBHHH
T ss_pred             CCcCHHHHHHHcCCHHHHHHHH--HcCCchhhh-ccCCCchhH-HHHhcccchhhHHhhhc-cch-hhhh-ccCCCCHHH
Confidence            4789999999999999999999  455555544 888999999 99999999999999988 433 7888 999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccC-CCC-CCCCCcchhHHH
Q 006173          113 YAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPK-TRE-PLDGRQGFVLLK  190 (658)
Q Consensus       113 ~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~-~~~-~~~~~~g~t~Lh  190 (658)
                      +|+..|+.+++++|++.++++ +.......+++..+. . |.||||+|+..|+.++|++|+++ +++ +..|..|.|++|
T Consensus       131 ~A~~~~~~~~~~~ll~~ga~~-~~~~~~~~~~~~~~~-~-g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~  207 (337)
T 4g8k_A          131 EAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRK-G-GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  207 (337)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCCCC-----CTT-C-SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHHHcCcHHHHHHHHHcCCCc-chhhccccccccccC-C-CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence            999999999999999999886 333333444555555 6 99999999999999999999964 664 678999999999


Q ss_pred             HHHhcCc----HHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCC
Q 006173          191 FLIDSNL----FDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSEN  266 (658)
Q Consensus       191 ~A~~~g~----~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  266 (658)
                      .++..+.    .+++++|++++. .++.+|.+|.||||+|++.++.                                  
T Consensus       208 ~~~~~~~~~~~~~i~~lLl~~ga-d~n~~d~~g~t~L~~a~~~~~~----------------------------------  252 (337)
T 4g8k_A          208 HALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHL----------------------------------  252 (337)
T ss_dssp             HHHHHSCTTTHHHHHHHHHHTTC-CTTCCCGGGCCHHHHHHHTTCH----------------------------------
T ss_pred             HHHHHcCcccHHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhhhh----------------------------------
Confidence            8876543    457788888754 4578899999999999998532                                  


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhc
Q 006173          267 VGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILN  346 (658)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  346 (658)
                                                                                       +.++.++.   ....
T Consensus       253 -----------------------------------------------------------------~~v~~Ll~---~~~~  264 (337)
T 4g8k_A          253 -----------------------------------------------------------------GLVQRLLE---QEHI  264 (337)
T ss_dssp             -----------------------------------------------------------------HHHHHHHT---STTC
T ss_pred             -----------------------------------------------------------------HHHHHHHH---hcCC
Confidence                                                                             11111111   1122


Q ss_pred             chhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCc
Q 006173          347 THEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNI  415 (658)
Q Consensus       347 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~  415 (658)
                      +.+.+|..|+||||+|++.|+.++|++|++++ .+      .+++||||+|+.+|+.++|++|+++|++
T Consensus       265 ~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Ad------~n~~~~L~~A~~~~~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          265 EINDTDSDGKTALLLAVELKLKKIAELLCKRG-AS------TDCGDLVMTARRNYDHSLVKVLLSHGAK  326 (337)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-CS------STTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC------CCCCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            34457888999999999999999999999999 54      3567899999999999999999999993

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.3e-34  Score=291.26  Aligned_cols=253  Identities=14%  Similarity=0.066  Sum_probs=175.0

Q ss_pred             cccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCC--CcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173           99 LQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEEL--PNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus        99 l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l--~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      ++.. |.+|+||||+||..|+.++|++|++.+++.  .+..+.           . |+||||+||..|+.++|++|++++
T Consensus         2 ~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-----------~-g~t~L~~A~~~g~~~~v~~Ll~~g   68 (282)
T 1oy3_D            2 FGYV-TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-----------L-GQTALHLAAILGEASTVEKLYAAG   68 (282)
T ss_dssp             CCCC-CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCcc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4566 999999999999999999999999988763  344555           6 999999999999999999999999


Q ss_pred             CC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccc------------cCCCCcHhHHHhcCCCCCCCCCCcchhh
Q 006173          177 RE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARAD------------IGETGKILESLSKRPKAFASGSRLGSWK  243 (658)
Q Consensus       177 ~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~------------d~~g~TpLh~Aa~~~~~~~s~~~l~~~~  243 (658)
                      ++ ...+..|.||||+|+..|+.++++.|++..+......            ...+.++++.++.....           
T Consensus        69 a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  137 (282)
T 1oy3_D           69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE-----------  137 (282)
T ss_dssp             CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc-----------
Confidence            95 6789999999999999999999999999865432110            01112222211111000           


Q ss_pred             hhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHh
Q 006173          244 RLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDA  323 (658)
Q Consensus       244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  323 (658)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (282)
T 1oy3_D          138 --------------------------------------------------------------------------------  137 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCH
Q 006173          324 KIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRRE  403 (658)
Q Consensus       324 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  403 (658)
                                 ............+.+.++..|.||||+|+..|+.+++++|++++ ++.....+..|+||||+|+..|+.
T Consensus       138 -----------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~  205 (282)
T 1oy3_D          138 -----------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAA  205 (282)
T ss_dssp             -----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             -----------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCH
Confidence                       00000000111223346788999999999999999999999999 765443334599999999999999


Q ss_pred             hHHHHHhcCCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhc-CcchhhhccCCCCCchhh
Q 006173          404 KVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCV-HPTLQDQLNDKDKTPREV  482 (658)
Q Consensus       404 ~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~-~~~~~~~~n~~G~Tp~dl  482 (658)
                      +++++|++.|+    ++|.+|.+|+||||+|++.|+.+.+                 +.++ .....+.+|.+|+||++.
T Consensus       206 ~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~~~~~~~v-----------------~~Ll~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          206 SVLELLLKAGA----DPTARMYGGRTPLGSALLRPNPILA-----------------RLLRAHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             HHHHHHHHTTC----CTTCCCTTSCCHHHHHHTSSCHHHH-----------------HHHHHTTCCCCCCC---------
T ss_pred             HHHHHHHHcCC----CCcccccCCCCHHHHHHHcCCcHHH-----------------HHHHHcCCCcCcCCCcccccccc
Confidence            99999999998    7899999999999999999984211                 1111 122367899999999999


Q ss_pred             hHHHHH
Q 006173          483 FTKEHE  488 (658)
Q Consensus       483 ~~~~~~  488 (658)
                      +.....
T Consensus       265 a~~~~~  270 (282)
T 1oy3_D          265 SGSDSD  270 (282)
T ss_dssp             ------
T ss_pred             cCCccc
Confidence            866543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=289.77  Aligned_cols=214  Identities=14%  Similarity=0.124  Sum_probs=131.1

Q ss_pred             CCCCcHHHHhhhcCCChHHHHHHHhcCCc------cccccccCCCCChHHHHHHhcCCH-HHHHHHHhcCCCCCcccccC
Q 006173           68 DQSSIFEFIVGIPDVPATLVDKLLSKVPR------NCLQNFARDEGSEYMEYAVSTGKL-NLITTLMGYNEELPNIKVEK  140 (658)
Q Consensus        68 ~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~------~~l~~~~d~~G~TpLh~Aa~~G~~-~iv~~Ll~~~~~l~~~~~~~  140 (658)
                      ..+.|||| .||..|+.++|++||+.+..      ..++.. |..|.||||.|+..++. +++++|++.|+++ +..+. 
T Consensus         9 ~~~~~~L~-~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~-   84 (269)
T 4b93_B            9 YREVEKLL-RAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ-   84 (269)
T ss_dssp             CHHHHHHH-HHHHTTCHHHHHHHHTCC-----------------------------------------CCCCT-TCCCT-
T ss_pred             ccchhHHH-HHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC-
Confidence            33455566 66666666666666555321      123445 66677777777766654 3666677666654 33344 


Q ss_pred             CCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCC
Q 006173          141 KDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGET  219 (658)
Q Consensus       141 ~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g  219 (658)
                                + |+||||+||..|+.++|++|++.+++ ...+..|.||+|.|+..++.++++.|++.+.+. +.     
T Consensus        85 ----------~-G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~-----  147 (269)
T 4b93_B           85 ----------D-GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NK-----  147 (269)
T ss_dssp             ----------T-SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CC-----
T ss_pred             ----------C-CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CC-----
Confidence                      5 77777777777777777777777764 456667777777777777777777777653321 11     


Q ss_pred             CcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhH
Q 006173          220 GKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLR  299 (658)
Q Consensus       220 ~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (658)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (269)
T 4b93_B          148 --------------------------------------------------------------------------------  147 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcC
Q 006173          300 QKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYF  379 (658)
Q Consensus       300 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~  379 (658)
                                                                         +|..|+||||+||..|+.+++++|++++ 
T Consensus       148 ---------------------------------------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-  175 (269)
T 4b93_B          148 ---------------------------------------------------KDLSGNTPLIYACSGGHHELVALLLQHG-  175 (269)
T ss_dssp             ---------------------------------------------------CCTTCCCHHHHHHHTTCGGGHHHHHHTT-
T ss_pred             ---------------------------------------------------CCCCCCCHHHHHHHCCCHHHHHHHHHCC-
Confidence                                                               2345778888888888888999999888 


Q ss_pred             CCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          380 PWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       380 ~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                      .+ ++.+|..|+||||+|+.+|+.++|++|++.|+    ++|.+|.+|+||||+|++.++
T Consensus       176 ad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga----d~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          176 AS-INASNNKGNTALHEAVIEKHVFVVELLLLHGA----SVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCSGGGSCTTCH
T ss_pred             CC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHhCCc
Confidence            65 56678899999999999999999999999988    778999999999999987653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-33  Score=277.16  Aligned_cols=212  Identities=17%  Similarity=0.176  Sum_probs=137.9

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      .+.|||| .|+..|+.+.++.|++. .+..++.. |..|.||||+|+..|+.+++++|++.++++ +..+.         
T Consensus         5 ~~~~~l~-~A~~~g~~~~v~~ll~~-~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~---------   71 (231)
T 3aji_A            5 VSNIMIC-NLAYSGKLDELKERILA-DKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD---------   71 (231)
T ss_dssp             CSSSHHH-HHHHHTCHHHHHHHHHH-CGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT---------
T ss_pred             cccchHH-HHHHhCCHHHHHHHHHh-chhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCC---------
Confidence            4566777 77777777777777766 33335556 667777777777777777777777666554 33333         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHh
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLS  227 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa  227 (658)
                        . |+||||+|+..|+.+++++|++++++ ...+..|.||||+|+..|+.++++.|++++.+. +.             
T Consensus        72 --~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~-------------  134 (231)
T 3aji_A           72 --A-GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DA-------------  134 (231)
T ss_dssp             --T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC-------------
T ss_pred             --C-CCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CC-------------
Confidence              4 77777777777777777777777664 455666777777777777777777766653211 00             


Q ss_pred             cCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHH
Q 006173          228 KRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLW  307 (658)
Q Consensus       228 ~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (658)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (231)
T 3aji_A          135 --------------------------------------------------------------------------------  134 (231)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccc
Q 006173          308 NNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKN  387 (658)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d  387 (658)
                                                                 ++..|.||||+|+..|+.+++++|++.+ .+ ++.+|
T Consensus       135 -------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~-~~~~~  169 (231)
T 3aji_A          135 -------------------------------------------KDHYDATAMHRAAAKGNLKMVHILLFYK-AS-TNIQD  169 (231)
T ss_dssp             -------------------------------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CC-SCCCC
T ss_pred             -------------------------------------------cCCCCCcHHHHHHHcCCHHHHHHHHhcC-CC-ccccC
Confidence                                                       2233567777777777777777777766 43 44556


Q ss_pred             cCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          388 KDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       388 ~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                      ..|+||||+|+..++.+++++|++.|+    +++.+|.+|+||||+|++.++
T Consensus       170 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          170 TEGNTPLHLACDEERVEEAKFLVTQGA----SIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCHHHHSCHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHhhHH
Confidence            677777777777777777777777766    556777777777777765544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=7.5e-34  Score=278.84  Aligned_cols=223  Identities=14%  Similarity=0.057  Sum_probs=194.5

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      +.+|||.|+..|+.+.++.++ +..+...+ ..+.+|.|||| .|+..|+.++|++|++.+ .+ ++.. |..|.||||+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll-~~~~~~~~-~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~   79 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERI-LADKSLAT-RTDQDSRTALH-WACSAGHTEIVEFLLQLG-VP-VNDK-DDAGWSPLHI   79 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHH-HHCGGGGG-CCCTTSCCHHH-HHHHHTCHHHHHHHHHTT-CC-SCCC-CTTSCCHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHH-Hhchhhhh-cCCCCCCCHHH-HHHHcCcHHHHHHHHHhC-CC-CCCc-CCCCCCHHHH
Confidence            568999999999999999999 76666554 34889999999 999999999999999994 33 7778 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHH
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A  192 (658)
                      |+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ...+..|.||||+|
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  146 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHV-NAVNQ-----------N-GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA  146 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            99999999999999999886 44454           5 99999999999999999999999985 67889999999999


Q ss_pred             HhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchh
Q 006173          193 IDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLE  272 (658)
Q Consensus       193 ~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (658)
                      +..|+.++++.|++.+.+. +.                                                          
T Consensus       147 ~~~~~~~~v~~Ll~~g~~~-~~----------------------------------------------------------  167 (231)
T 3aji_A          147 AAKGNLKMVHILLFYKAST-NI----------------------------------------------------------  167 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCS-CC----------------------------------------------------------
T ss_pred             HHcCCHHHHHHHHhcCCCc-cc----------------------------------------------------------
Confidence            9999999999999864322 11                                                          


Q ss_pred             hhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhh
Q 006173          273 KQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQ  352 (658)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  352 (658)
                                                                                                    +|
T Consensus       168 ------------------------------------------------------------------------------~~  169 (231)
T 3aji_A          168 ------------------------------------------------------------------------------QD  169 (231)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------cC
Confidence                                                                                          33


Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      ..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..++.+++++|.+.++
T Consensus       170 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          170 TEGNTPLHLACDEERVEEAKFLVTQG-AS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTT-CC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCC-CC-CCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            45889999999999999999999998 65 46789999999999999999999999988754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.7e-34  Score=302.41  Aligned_cols=215  Identities=16%  Similarity=0.125  Sum_probs=182.2

Q ss_pred             cccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCC
Q 006173           65 IIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDP  144 (658)
Q Consensus        65 ~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~  144 (658)
                      ..|.+|.|||| .||..|+.++|++|++.+ .+ ++.. |..|.||||+||..|+.++|++|++.+++..   ..     
T Consensus        15 ~~d~~g~t~L~-~Aa~~g~~~~v~~Ll~~g-~~-~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~-----   82 (364)
T 3ljn_A           15 KSDDENMEKIH-VAARKGQTDEVRRLIETG-VS-PTIQ-NRFGCTALHLACKFGCVDTAKYLASVGEVHS---LW-----   82 (364)
T ss_dssp             -CCHHHHHHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CB-----
T ss_pred             ccCCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-cccc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---cc-----
Confidence            34778999999 999999999999999994 33 7888 9999999999999999999999999998542   23     


Q ss_pred             CCcccCCCCCcHHHHHHHhCcHHHHHHhccC----CCC-CC-----------------CCCcchhHHHHHHhcC--cHHH
Q 006173          145 NIKDEEKDDLLPVHMAAKAGKRDAVRHLLPK----TRE-PL-----------------DGRQGFVLLKFLIDSN--LFDM  200 (658)
Q Consensus       145 ~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~----~~~-~~-----------------~~~~g~t~Lh~A~~~g--~~~i  200 (658)
                            . |.||||+|+..|+.++|++|+++    +.+ ..                 .+..|.||||+|+..|  +.++
T Consensus        83 ------~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~  155 (364)
T 3ljn_A           83 ------H-GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEM  155 (364)
T ss_dssp             ------T-TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHH
T ss_pred             ------C-CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHH
Confidence                  4 99999999999999999999998    442 11                 5666777777777777  7777


Q ss_pred             HHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHH
Q 006173          201 ALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSK  280 (658)
Q Consensus       201 v~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (658)
                      +++|++.+.+.                                                                     
T Consensus       156 v~~Ll~~ga~~---------------------------------------------------------------------  166 (364)
T 3ljn_A          156 IKILVQLGASP---------------------------------------------------------------------  166 (364)
T ss_dssp             HHHHHHHTCCT---------------------------------------------------------------------
T ss_pred             HHHHHHcCCCC---------------------------------------------------------------------
Confidence            77777663221                                                                     


Q ss_pred             HHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHH
Q 006173          281 IQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMF  360 (658)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh  360 (658)
                                                                                          +.+|..|.||||
T Consensus       167 --------------------------------------------------------------------~~~d~~g~t~L~  178 (364)
T 3ljn_A          167 --------------------------------------------------------------------TAKDKADETPLM  178 (364)
T ss_dssp             --------------------------------------------------------------------TCCCTTSCCHHH
T ss_pred             --------------------------------------------------------------------cccCCCCCCHHH
Confidence                                                                                124456889999


Q ss_pred             HHHHhCcHHHHHHHHhhcCCCc----ccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhh
Q 006173          361 KAARLGIYEIVMGIMNSYFPWS----LEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAM  436 (658)
Q Consensus       361 ~Aa~~G~~~~v~~Ll~~~~~~~----~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  436 (658)
                      +|+..|+.+++++|++++ ++.    ++.+|..|+||||+|+..|+.+++++|++.|+    ++|.+|.+|+||||+|++
T Consensus       179 ~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~  253 (364)
T 3ljn_A          179 RAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI----DVNMEDNEHTVPLYLSVR  253 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHH
Confidence            999999999999999998 663    67789999999999999999999999999998    789999999999999999


Q ss_pred             cCCC
Q 006173          437 SVPS  440 (658)
Q Consensus       437 ~g~~  440 (658)
                      .|+.
T Consensus       254 ~g~~  257 (364)
T 3ljn_A          254 AAMV  257 (364)
T ss_dssp             TCCH
T ss_pred             hChH
Confidence            9985

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=287.37  Aligned_cols=227  Identities=16%  Similarity=0.155  Sum_probs=163.6

Q ss_pred             hhhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccc------cccccCCCCcHHHHhhhcCCCh-HHHHHHHhcCCccc
Q 006173           26 EKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNAL------TCIIVDQSSIFEFIVGIPDVPA-TLVDKLLSKVPRNC   98 (658)
Q Consensus        26 ~~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~------~~~~~~~g~T~Lh~~Aa~~g~~-~iv~~Ll~~~~~~~   98 (658)
                      ++..+|+.+.+||+.||..|+.+.|+.|| +......      ....+..|.|||| .|+..++. .+++.|++.| .+ 
T Consensus         3 ee~kkd~~~~~~L~~A~~~G~~~~v~~LL-~~~~~~~~~~~~~~~~~~~~~~t~L~-~a~~~~~~~~~v~~Ll~~G-ad-   78 (269)
T 4b93_B            3 EETKKDYREVEKLLRAVADGDLEMVRYLL-EWTEEDLEDAEDTVSAADPEFCHPLC-QCPKCAPAQKRLAKVPASG-LG-   78 (269)
T ss_dssp             ----CCCHHHHHHHHHHHTTCHHHHHHHH-TCC-----------------------------------------CC-CC-
T ss_pred             cccccCccchhHHHHHHHcCCHHHHHHHH-HCCCcccccccccccccCccCCCHHH-HHHHhCCHHHHHHHHHHCC-CC-
Confidence            44566788899999999999999999999 5433221      1123677899999 99988775 5889999884 33 


Q ss_pred             cccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173           99 LQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus        99 l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      ++.+ |.+|+||||+||..|+.++|++|++.++++ ...+.           . |.||+|+|+..++.+++++|++++++
T Consensus        79 vn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~-----------~-g~t~l~~a~~~~~~~~~~~Ll~~g~~  144 (269)
T 4b93_B           79 VNVT-SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNA-----------D-QAVPLHLACQQGHFQVVKCLLDSNAK  144 (269)
T ss_dssp             TTCC-CTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCT-----------T-CCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCc-CCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCC-----------C-CCCccccccccChHHHHHHHHHCCCC
Confidence            7888 999999999999999999999999999886 44444           5 99999999999999999999999985


Q ss_pred             -CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCC
Q 006173          179 -PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYN  257 (658)
Q Consensus       179 -~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~  257 (658)
                       +.+|..|.||||+|+..|+.+++++|++.+.++ +.                                           
T Consensus       145 ~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~-------------------------------------------  180 (269)
T 4b93_B          145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NA-------------------------------------------  180 (269)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TC-------------------------------------------
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-Cc-------------------------------------------
Confidence             678999999999999999999999999874332 11                                           


Q ss_pred             CCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHH
Q 006173          258 PHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIM  337 (658)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  337 (658)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (269)
T 4b93_B          181 --------------------------------------------------------------------------------  180 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhc
Q 006173          338 CAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFN  411 (658)
Q Consensus       338 ~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  411 (658)
                                   ++..|.||||+|+..|+.++|++|++++ .+ ++.+|.+|+||||+|+++++  ++++|..
T Consensus       181 -------------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad-~~~~d~~G~TpL~~A~~~~~--i~~lL~~  237 (269)
T 4b93_B          181 -------------SNNKGNTALHEAVIEKHVFVVELLLLHG-AS-VQVLNKRQRTAVDCAEQNSK--IMELLQV  237 (269)
T ss_dssp             -------------BCTTSCBHHHHHHHTTCHHHHHHHHHTT-CC-SCCCCTTSCCSGGGSCTTCH--HHHHTTC
T ss_pred             -------------cccCCCcHHHHHHHcCCHHHHHHHHHCC-CC-CCCcCCCCCCHHHHHHhCCc--HHHHHHH
Confidence                         3445889999999999999999999999 65 57789999999999988775  5554433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1e-33  Score=279.55  Aligned_cols=228  Identities=13%  Similarity=0.118  Sum_probs=189.4

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhh---cCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCC
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMS---KTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDE  106 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~---~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~  106 (658)
                      .+.++++|||.||..|+.+.++.++ +   ..+..++.+ +..|.|||| .|+..|+.+++++|++.+ .+ ++.. |..
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~   78 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLV-NLFQQGGRELDIY-NNLRQTPLH-LAVITTLPSVVRLLVTAG-AS-PMAL-DRH   78 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHH-HHHHHTTCCSCCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTT
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHH-HHHHhcCCCCCcc-cccCCCHHH-HHHHcCCHHHHHHHHHcC-CC-cccc-CCC
Confidence            4567889999999999999999998 5   244555544 788999999 999999999999999984 33 6777 999


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCC---CCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          107 GSEYMEYAVSTGKLNLITTLMGYNEE---LPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       107 G~TpLh~Aa~~G~~~iv~~Ll~~~~~---l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      |.||||+|+..|+.+++++|++.++.   .....+.           . |.||||+|+..|+.+++++|++++++ ...+
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  146 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-----------D-GLTALHVAVNTECQETVQLLLERGADIDAVD  146 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-----------C-CCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            99999999999999999999999873   1233333           6 99999999999999999999999985 4455


Q ss_pred             -CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCC
Q 006173          183 -RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPH  261 (658)
Q Consensus       183 -~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~  261 (658)
                       ..|.||||+|+..|+.++++.|++.+.+. +                                                
T Consensus       147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~------------------------------------------------  177 (241)
T 1k1a_A          147 IKSGRSPLIHAVENNSLSMVQLLLQHGANV-N------------------------------------------------  177 (241)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-T------------------------------------------------
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-C------------------------------------------------
Confidence             78999999999999999999999874322 1                                                


Q ss_pred             CCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhh
Q 006173          262 PPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGA  341 (658)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  341 (658)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (241)
T 1k1a_A          178 --------------------------------------------------------------------------------  177 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          342 VDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       342 ~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                              .+|..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..|+.++++.|.+.++
T Consensus       178 --------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          178 --------AQMYSGSSALHSASGRGLLPLVRTLVRSG-AD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             --------CBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CC-TTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             --------CcCCCCCCHHHHHHHcCCHHHHHHHHhcC-CC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence                    13445889999999999999999999998 65 56789999999999999999999999988754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.2e-33  Score=271.13  Aligned_cols=221  Identities=15%  Similarity=0.154  Sum_probs=185.5

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCcccccc-ccCCCCChHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQN-FARDEGSEYME  112 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~-~~d~~G~TpLh  112 (658)
                      +.+|||.||..|+.+.++.++ +..+.... ..+.+|+|||| .|+..|+.+++++|++.+....++. . |..|.||||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~-~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELL-HSKPSLLL-QKDQDGRIPLH-WSVSFQAHEITSFLLSKMENVNLDDYP-DDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHH-HHCGGGTT-CCCTTSCCHHH-HHHHTTCHHHHHHHHHTCTTCCGGGCC-CTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHH-hcCccccc-cCCCCCCCHHH-HHHHcCCHHHHHHHHhccccccccccC-CCCCCCHHH
Confidence            358999999999999999999 66655443 34889999999 9999999999999999964333555 6 899999999


Q ss_pred             HHHhcCCHHHHHHHHhcC--CCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHH
Q 006173          113 YAVSTGKLNLITTLMGYN--EELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLL  189 (658)
Q Consensus       113 ~Aa~~G~~~iv~~Ll~~~--~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~L  189 (658)
                      +|+..|+.+++++|++.+  +++ +..+.           . |.||||+|+..|+.+++++|++++++ ..+|..|.|||
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  144 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLKPDL-NKITN-----------Q-GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL  144 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSCCCT-TCCCT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCccc-ccCCc-----------C-CCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHH
Confidence            999999999999999998  554 44444           6 99999999999999999999999985 67899999999


Q ss_pred             HHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCC
Q 006173          190 KFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGG  269 (658)
Q Consensus       190 h~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  269 (658)
                      |+|+..|+.++++.|++.++...+.                                                       
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~~~~~-------------------------------------------------------  169 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKSAVNW-------------------------------------------------------  169 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCSCC-------------------------------------------------------
T ss_pred             HHHHHcCCHHHHHHHHhcCcccccC-------------------------------------------------------
Confidence            9999999999999999875332211                                                       


Q ss_pred             chhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchh
Q 006173          270 DLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHE  349 (658)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  349 (658)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (228)
T 2dzn_A          170 --------------------------------------------------------------------------------  169 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcCCCcHHHHHHHhCcHHHHHHHH-hhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcC
Q 006173          350 EAQNVFKKPMFKAARLGIYEIVMGIM-NSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       350 ~~~~~g~tpLh~Aa~~G~~~~v~~Ll-~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                       +|..|+||||+|+..|+.+++++|+ +.+ . .++.+|.+|+||||+|+..   +++++|+++
T Consensus       170 -~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a-~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          170 -QDKQGWTPLFHALAEGHGDAAVLLVEKYG-A-EYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             -CCTTSCCHHHHHHHTTCHHHHHHHHHHHC-C-CSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C-CCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence             3445889999999999999999999 666 4 4677899999999999654   567777654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.5e-33  Score=272.42  Aligned_cols=225  Identities=15%  Similarity=0.113  Sum_probs=191.3

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ..+..+.+|||.||..|+.+.++.++ +. +..++.. +.+|.|||| .|+..|+.++|++|++.+ .+ ++.. |..|.
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~-g~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~   78 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLV-QA-GANIDTC-SEDQRTPLM-EAAENNHLEAVKYLIKAG-AL-VDPK-DAEGS   78 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHH-HT-TCCTTCC-CTTCCCHHH-HHHHTTCHHHHHHHHTTT-CC-CCCC-CTTSC
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHH-Hc-CCCcCcc-CCCCCCHHH-HHHHhCCHHHHHHHHhCC-CC-CCCC-CCCCC
Confidence            34556889999999999999999999 44 4445444 788999999 999999999999999984 33 6777 99999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchh
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFV  187 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t  187 (658)
                      ||||+|+..|+.+++++|++.++...+..+.           . |.||||+|+..|+.+++++|++++++ ...+..|.|
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  146 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-----------G-GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI  146 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC
Confidence            9999999999999999999998544455665           6 99999999999999999999999985 678899999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENV  267 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  267 (658)
                      |||+|+..|+.++++.|++.+.+. +.                                                     
T Consensus       147 ~L~~A~~~~~~~~~~~Ll~~g~~~-~~-----------------------------------------------------  172 (237)
T 3b7b_A          147 CLHWAAFSGCVDIAEILLAAKCDL-HA-----------------------------------------------------  172 (237)
T ss_dssp             HHHHHHHHCCHHHHHHHHTTTCCT-TC-----------------------------------------------------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCC-CC-----------------------------------------------------
Confidence            999999999999999999874322 11                                                     


Q ss_pred             CCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcc
Q 006173          268 GGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNT  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  347 (658)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (237)
T 3b7b_A          173 --------------------------------------------------------------------------------  172 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhc
Q 006173          348 HEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFN  411 (658)
Q Consensus       348 ~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  411 (658)
                         +|..|.||||+|+..|+.+++++|++++ .+ ++.+|.+|+||||+|+.+++.+.+..+++
T Consensus       173 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad-~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          173 ---VNIHGDSPLHIAARENRYDCVVLFLSRD-SD-VTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             ---CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CC-TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             ---cCCCCCCHHHHHHHhCCHhHHHHHHHcC-CC-CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence               2345789999999999999999999998 65 56679999999999999999876665554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.3e-32  Score=266.77  Aligned_cols=228  Identities=11%  Similarity=0.072  Sum_probs=188.7

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCC
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPN  145 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~  145 (658)
                      +|..|.|||| .|+..|+.+++++|++.+ .+ ++.. |..|.||||+|+..|+.+++++|++.+++.....+.      
T Consensus         5 ~d~~~~~~l~-~A~~~g~~~~~~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~------   74 (240)
T 3eu9_A            5 IDDYSTWDIV-KATQYGIYERCRELVEAG-YD-VRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD------   74 (240)
T ss_dssp             CSCGGGCCHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT------
T ss_pred             cccccchHHH-HHHHcCChHHHHHHHHcC-CC-cCCC-CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC------
Confidence            3778899999 999999999999999984 33 7777 899999999999999999999999999887666666      


Q ss_pred             CcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhH
Q 006173          146 IKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILE  224 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh  224 (658)
                           . |.||||+|+..|+.+++++|++++++ ...+..|.||||+|+..|+.++++.|++++.+ .+.+|.+|.||||
T Consensus        75 -----~-~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~  147 (240)
T 3eu9_A           75 -----L-NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLM  147 (240)
T ss_dssp             -----T-TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             -----c-CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHH
Confidence                 6 99999999999999999999999885 56788999999999999999999999998554 5778889999999


Q ss_pred             HHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHH
Q 006173          225 SLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKF  304 (658)
Q Consensus       225 ~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (658)
                      +|+.++..      ..+.+                                                             
T Consensus       148 ~a~~~~~~------~~~~~-------------------------------------------------------------  160 (240)
T 3eu9_A          148 WAAYRTHS------VDPTR-------------------------------------------------------------  160 (240)
T ss_dssp             HHHHHCCS------STTHH-------------------------------------------------------------
T ss_pred             HHHHhCCh------HHHHH-------------------------------------------------------------
Confidence            99966432      00111                                                             


Q ss_pred             HHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhc-CCCcHHHHHHHhCcHHHHHHHHhhcCCCcc
Q 006173          305 VLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQN-VFKKPMFKAARLGIYEIVMGIMNSYFPWSL  383 (658)
Q Consensus       305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~  383 (658)
                                                     .+.    ....+.+..+. .|.||||+|+..|+.+++++|++++ .+ +
T Consensus       161 -------------------------------~L~----~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~-~  203 (240)
T 3eu9_A          161 -------------------------------LLL----TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-AN-V  203 (240)
T ss_dssp             -------------------------------HHH----HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CC-T
T ss_pred             -------------------------------HHH----hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CC-C
Confidence                                           111    11122222343 7899999999999999999999998 66 5


Q ss_pred             cccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          384 EFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       384 ~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      +.+|..|+||||+|+..|+.+++++|++.++
T Consensus       204 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          204 DAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            6779999999999999999999999999976

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=4.6e-32  Score=264.53  Aligned_cols=214  Identities=15%  Similarity=0.160  Sum_probs=174.9

Q ss_pred             CCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHH
Q 006173           45 NDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLIT  124 (658)
Q Consensus        45 G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~  124 (658)
                      |+.+.++.++ + .+..++...+.+|+|||| .||..|+.++|++|++.+ .+ ++.. |..|.||||+|+..|+.++++
T Consensus         2 g~~~~i~~Ll-~-~g~~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~   75 (223)
T 2f8y_A            2 DAPAVISDFI-Y-QGASLHNQTDRTGETALH-LAARYSRSDAAKRLLEAS-AD-ANIQ-DNMGRTPLHAAVSADAQGVFQ   75 (223)
T ss_dssp             ---CCEETTE-E-TTCCTTCCCTTTCCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHH-H-cCCCcccccCCCCCchHH-HHHHcCCHHHHHHHHHcC-CC-CCCc-CCCCCCHHHHHHHcCCHHHHH
Confidence            5666777777 3 344454555788999999 999999999999999884 33 6677 889999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHH
Q 006173          125 TLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALA  203 (658)
Q Consensus       125 ~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~  203 (658)
                      +|++.++......+.           . |.||||+|+..|+.+++++|++++++ ...|..|.||||+|+..|+.+++++
T Consensus        76 ~Ll~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  143 (223)
T 2f8y_A           76 ILIRNRATDLDARMH-----------D-GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV  143 (223)
T ss_dssp             HHHHBTTSCTTCCCT-----------T-CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCCCcccCCC-----------C-CCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            999988755566666           6 99999999999999999999998885 5678889999999999999999999


Q ss_pred             HHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHH
Q 006173          204 LLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQL  283 (658)
Q Consensus       204 LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (658)
                      |++++.+. +                                                                      
T Consensus       144 Ll~~g~~~-~----------------------------------------------------------------------  152 (223)
T 2f8y_A          144 LLKNGANK-D----------------------------------------------------------------------  152 (223)
T ss_dssp             HHHTTCCT-T----------------------------------------------------------------------
T ss_pred             HHHcCCCC-C----------------------------------------------------------------------
Confidence            88864322 1                                                                      


Q ss_pred             HHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHH
Q 006173          284 KKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAA  363 (658)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa  363 (658)
                                                                                        .+|..|.||||+|+
T Consensus       153 ------------------------------------------------------------------~~~~~g~t~L~~A~  166 (223)
T 2f8y_A          153 ------------------------------------------------------------------MQNNREETPLFLAA  166 (223)
T ss_dssp             ------------------------------------------------------------------CCCTTCCCHHHHHH
T ss_pred             ------------------------------------------------------------------CcCCCCcCHHHHHH
Confidence                                                                              13445889999999


Q ss_pred             HhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCc
Q 006173          364 RLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNI  415 (658)
Q Consensus       364 ~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~  415 (658)
                      ..|+.+++++|++++ .+ ++.+|..|+||||+|+..++.+++++|++.|+.
T Consensus       167 ~~~~~~~v~~Ll~~g-a~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          167 REGSYETAKVLLDHF-AN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHTCHHHHHHHHHTT-CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HcCCHHHHHHHHHcC-CC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            999999999999998 65 566799999999999999999999999999873

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=5e-32  Score=274.85  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=178.2

Q ss_pred             HHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCH
Q 006173           41 YILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKL  120 (658)
Q Consensus        41 A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~  120 (658)
                      ++...+.+.++.+| ...  .++.+ |.+|+|||| .|+..|+.++|++|++.+ .+ ++..   +|.||||+||..|+.
T Consensus         6 ~i~~~~~~~v~~lL-~~~--~~~~~-d~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~---~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            6 RINTWKSKQLKSFL-SSK--DTFKA-DVHGHSASY-YAIADNNVRLVCTLLNAG-AL-KNLL---ENEFPLHQAATLEDT   75 (285)
T ss_dssp             TGGGCCHHHHHHHH-HST--TTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-GG-GSCC---TTCCHHHHHTTSSSC
T ss_pred             HHHhcCHHHHHHHH-HhC--CCCcc-CCCCCCHHH-HHHHcCCHHHHHHHHhCC-CC-CCCC---CCCCHHHHHHHcCCH
Confidence            35677888888888 333  24434 889999999 999999999999999994 33 4444   489999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcc-hhHHHHHHhcCcH
Q 006173          121 NLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQG-FVLLKFLIDSNLF  198 (658)
Q Consensus       121 ~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g-~t~Lh~A~~~g~~  198 (658)
                      +++++|++.++++ +..+.           . |+||||+|+..|+.+++++|++++++ ...+..| .||||+|+..|+.
T Consensus        76 ~~v~~Ll~~ga~~-~~~d~-----------~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~  142 (285)
T 3kea_A           76 KIVKILLFSGLDD-SQFDD-----------K-GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV  142 (285)
T ss_dssp             HHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCCC-CCcCC-----------C-CCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Confidence            9999999998885 44455           6 99999999999999999999999885 5678888 7999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhh
Q 006173          199 DMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVT  278 (658)
Q Consensus       199 ~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (658)
                      +++++|+++++...   +.                                                             
T Consensus       143 ~~v~~Ll~~g~~~~---~~-------------------------------------------------------------  158 (285)
T 3kea_A          143 SIVSYFLSEIPSTF---DL-------------------------------------------------------------  158 (285)
T ss_dssp             HHHHHHHTTSCTTC---CC-------------------------------------------------------------
T ss_pred             HHHHHHHhCCCccc---cc-------------------------------------------------------------
Confidence            99999998754321   00                                                             


Q ss_pred             HHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcH
Q 006173          279 SKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKP  358 (658)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tp  358 (658)
                                                                                                ..|.||
T Consensus       159 --------------------------------------------------------------------------~~g~t~  164 (285)
T 3kea_A          159 --------------------------------------------------------------------------AILLSC  164 (285)
T ss_dssp             --------------------------------------------------------------------------STHHHH
T ss_pred             --------------------------------------------------------------------------cCCccH
Confidence                                                                                      135588


Q ss_pred             HHHHHHhCcHHHHHHHHhhcCCCcccccccCCChH-HHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhc
Q 006173          359 MFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDI-FKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMS  437 (658)
Q Consensus       359 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~  437 (658)
                      ||+|+..|+.+++++|++++ .+ ++.+|..|+|| ||+|+.+++.+++++|++.|+    +++.+|       |.|+..
T Consensus       165 L~~A~~~g~~~~v~~Ll~~g-ad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga----d~~~~~-------~~a~~~  231 (285)
T 3kea_A          165 IHITIKNGHVDMMILLLDYM-TS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI----NIYSAN-------LENVLL  231 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-HH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB----CSTTTT-------GGGGTT
T ss_pred             HHHHHHcChHHHHHHHHHcC-CC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC----CCCCCC-------hhhhhc
Confidence            88888888888888888887 54 55677888887 888888888888888888877    566666       355555


Q ss_pred             CC
Q 006173          438 VP  439 (658)
Q Consensus       438 g~  439 (658)
                      |+
T Consensus       232 ~~  233 (285)
T 3kea_A          232 DD  233 (285)
T ss_dssp             TC
T ss_pred             CC
Confidence            55

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=2e-33  Score=290.98  Aligned_cols=281  Identities=11%  Similarity=0.058  Sum_probs=189.2

Q ss_pred             hCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCc-cc--c-cc-------ccCCCC---Ch
Q 006173           44 ENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPR-NC--L-QN-------FARDEG---SE  109 (658)
Q Consensus        44 ~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~-~~--l-~~-------~~d~~G---~T  109 (658)
                      ....+.++.++  ..+..++.. +..|.|++|      |+.++|+.|++++.. +.  + ..       +....+   .+
T Consensus        29 ~~~~dlv~~ll--~~ga~i~~~-~~~g~~~~~------g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (327)
T 1sw6_A           29 TFTHDLTSDFL--SSPLKIMKA-LPSPVVNDN------EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ   99 (327)
T ss_dssp             ECCTTCCCSTT--TSSCCCEEC-BCCCCCCCH------HHHHHHHHHHHHHHC---------------------------
T ss_pred             hhcCchHHHHh--hCCcccccC-CCCCCcccC------chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccc
Confidence            44555677777  556667655 788999988      999999999988521 10  0 00       001122   23


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhH
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVL  188 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~  188 (658)
                      .+|+|+..+..+++++|++.+.++....+.           . |+||||+||..|+.++|++|++++++ +.+|..|.||
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~-----------~-g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp  167 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDE-----------H-GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC  167 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCST-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCC-----------C-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            468889889999999999998886443555           6 99999999999999999999999995 6889999999


Q ss_pred             HHHHHhcCc---HHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCC
Q 006173          189 LKFLIDSNL---FDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSE  265 (658)
Q Consensus       189 Lh~A~~~g~---~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~  265 (658)
                      ||+|+..|+   .++++.|++......+.+|.+|.||||+|++....   .....+++.++...                
T Consensus       168 Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~---~g~~~~v~~Ll~~~----------------  228 (327)
T 1sw6_A          168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM---TGCSAAAKYYLDIL----------------  228 (327)
T ss_dssp             HHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS---TTCHHHHHHHHHHH----------------
T ss_pred             HHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccc---cccHHHHHHHHHHH----------------
Confidence            999999998   78888888887666788999999999999983110   00111111111000                


Q ss_pred             CCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 006173          266 NVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDIL  345 (658)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  345 (658)
                                         ..++....                     ..        ...+            ......
T Consensus       229 -------------------~~~~~~~~---------------------~~--------~i~~------------~~~~~g  248 (327)
T 1sw6_A          229 -------------------MGWIVKKQ---------------------NR--------PIQS------------GTNEKE  248 (327)
T ss_dssp             -------------------HHHHHHGG---------------------GC--------CEEE------------C-----
T ss_pred             -------------------HHHHhccc---------------------ch--------HHHh------------hhhccc
Confidence                               00000000                     00        0000            000112


Q ss_pred             cchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCccccccccccc
Q 006173          346 NTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDE  425 (658)
Q Consensus       346 ~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~  425 (658)
                      .+.+.++..|.||||.|+.      +++|+++.    ++.+|..|+||||+|+.+|+.+++++|++.|+    +++.+|.
T Consensus       249 ~~~~~~~~~g~t~L~~a~~------~~~Ll~~~----~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga----d~~~~d~  314 (327)
T 1sw6_A          249 SKPNDKNGERKDSILENLD------LKWIIANM----LNAQDSNGDTCLNIAARLGNISIVDALLDYGA----DPFIANK  314 (327)
T ss_dssp             -----------CHHHHHCS------HHHHHHHT----TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC----CTTCCCT
T ss_pred             CCcccccccCCChhHHHHH------HHHHHHhC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCC
Confidence            3334577889999999996      88899886    45678999999999999999999999999998    7899999


Q ss_pred             CCCchhhhHhhcC
Q 006173          426 KRINILHIAAMSV  438 (658)
Q Consensus       426 ~G~TpLHlAa~~g  438 (658)
                      +|+||||+|++.|
T Consensus       315 ~G~TpL~~A~~~g  327 (327)
T 1sw6_A          315 SGLRPVDFGAGLE  327 (327)
T ss_dssp             TSCCGGGGTCC--
T ss_pred             CCCCHHHHHHhcC
Confidence            9999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.5e-32  Score=270.65  Aligned_cols=218  Identities=11%  Similarity=0.106  Sum_probs=179.2

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhcCCcc--ccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSKVPRN--CLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDD  143 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~--~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d  143 (658)
                      .|.+|+|||| .|+..|+.++|+.|++.+...  .++.. |..|.||||+|+..|+.+++++|++.++++ +..+.    
T Consensus         4 ~d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~----   76 (236)
T 1ikn_D            4 LTEDGDSFLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF----   76 (236)
T ss_dssp             ---CCCCTTH-HHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT----
T ss_pred             CCCCCCchhH-HHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC----
Confidence            4789999999 999999999999999985432  58888 999999999999999999999999988875 44455    


Q ss_pred             CCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-------CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCcccccc
Q 006173          144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-------PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADI  216 (658)
Q Consensus       144 ~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-------~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d  216 (658)
                             . |.||||+|+..|+.+++++|++++++       ...+..|.||||+|+..|+.+++++|++++.+. +   
T Consensus        77 -------~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~---  144 (236)
T 1ikn_D           77 -------R-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-N---  144 (236)
T ss_dssp             -------T-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-T---
T ss_pred             -------C-CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-C---
Confidence                   6 99999999999999999999999873       457778999999999999999999999874432 0   


Q ss_pred             CCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccc
Q 006173          217 GETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFG  296 (658)
Q Consensus       217 ~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (658)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (236)
T 1ikn_D          145 --------------------------------------------------------------------------------  144 (236)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhc-CCCcHHHHHHHhCcHHHHHHHH
Q 006173          297 SLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQN-VFKKPMFKAARLGIYEIVMGIM  375 (658)
Q Consensus       297 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~g~tpLh~Aa~~G~~~~v~~Ll  375 (658)
                                                                           .++. .|.||||+|+..|+.+++++|+
T Consensus       145 -----------------------------------------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll  171 (236)
T 1ikn_D          145 -----------------------------------------------------AQEPCNGRTALHLAVDLQNPDLVSLLL  171 (236)
T ss_dssp             -----------------------------------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             -----------------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                                                 0222 5889999999999999999999


Q ss_pred             hhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCC
Q 006173          376 NSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVP  439 (658)
Q Consensus       376 ~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~  439 (658)
                      +++ .+ ++.+|..|+||||+|+.+++.+++++|++.|++.  ....++.+|.||.+.+.....
T Consensus       172 ~~g-a~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~--~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          172 KCG-AD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN--LQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             TTT-CC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG--GSSCCCCCTTTCCCCC-----
T ss_pred             HcC-CC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhh--hhcCCccchHHHHhhhccccc
Confidence            998 65 5678999999999999999999999999999833  456899999999998876554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=4.6e-31  Score=257.41  Aligned_cols=202  Identities=11%  Similarity=0.091  Sum_probs=171.0

Q ss_pred             CCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHH
Q 006173           81 DVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMA  160 (658)
Q Consensus        81 ~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~A  160 (658)
                      .|+.+++++|++.+ .+..+.. |..|.||||+||..|+.+++++|++.++++ +..+.           . |.||||+|
T Consensus         1 gg~~~~i~~Ll~~g-~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A   65 (223)
T 2f8y_A            1 GDAPAVISDFIYQG-ASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN-----------M-GRTPLHAA   65 (223)
T ss_dssp             ----CCEETTEETT-CCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHH
T ss_pred             CCcHHHHHHHHHcC-CCccccc-CCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-----------C-CCCHHHHH
Confidence            37888999999984 4434556 889999999999999999999999998875 44444           5 99999999


Q ss_pred             HHhCcHHHHHHhccCCC--CCCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCC
Q 006173          161 AKAGKRDAVRHLLPKTR--EPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSR  238 (658)
Q Consensus       161 a~~g~~~iv~~Ll~~~~--~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~  238 (658)
                      +..|+.+++++|+++++  ....+..|.||||+|+..|+.++++.|++.+.+. +                         
T Consensus        66 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~-------------------------  119 (223)
T 2f8y_A           66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-N-------------------------  119 (223)
T ss_dssp             HHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-T-------------------------
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-c-------------------------
Confidence            99999999999999887  3567889999999999999999999999864322 1                         


Q ss_pred             cchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhH
Q 006173          239 LGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIK  318 (658)
Q Consensus       239 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  318 (658)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (223)
T 2f8y_A          120 --------------------------------------------------------------------------------  119 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHH
Q 006173          319 SIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAV  398 (658)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~  398 (658)
                                                     .+|..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+
T Consensus       120 -------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~-~~~~~~~g~t~L~~A~  166 (223)
T 2f8y_A          120 -------------------------------AVDDLGKSALHWAAAVNNVDAAVVLLKNG-AN-KDMQNNREETPLFLAA  166 (223)
T ss_dssp             -------------------------------CBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTCCCHHHHHH
T ss_pred             -------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CC-CCCcCCCCcCHHHHHH
Confidence                                           13345889999999999999999999998 65 5667999999999999


Q ss_pred             HhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          399 EHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       399 ~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ..++.+++++|++.|+    +++.+|..|+||||+|++.++.
T Consensus       167 ~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          167 REGSYETAKVLLDHFA----NRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             HHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHcCC----CCccccccCCCHHHHHHHhcch
Confidence            9999999999999998    6789999999999999999984

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=4e-31  Score=268.20  Aligned_cols=160  Identities=15%  Similarity=0.125  Sum_probs=139.5

Q ss_pred             hhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCC
Q 006173           27 KIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDE  106 (658)
Q Consensus        27 ~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~  106 (658)
                      .+..+.+++||||.|+..|+.+.++.|+ +. +..++..   +|+|||| .|+..|+.++|++|++++ .+ ++.. |..
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~-g~~~~~~---~g~t~L~-~A~~~g~~~~v~~Ll~~g-a~-~~~~-d~~   94 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLL-NA-GALKNLL---ENEFPLH-QAATLEDTKIVKILLFSG-LD-DSQF-DDK   94 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT-TGGGSCC---TTCCHHH-HHTTSSSCHHHHHHHHTT-CC-TTCC-CTT
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHH-hC-CCCCCCC---CCCCHHH-HHHHcCCHHHHHHHHHCC-CC-CCCc-CCC
Confidence            3455677999999999999999999999 44 4445533   6999999 999999999999999994 34 7788 999


Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCC-CcHHHHHHHhCcHHHHHHhccCCCCCCCCCcc
Q 006173          107 GSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDD-LLPVHMAAKAGKRDAVRHLLPKTREPLDGRQG  185 (658)
Q Consensus       107 G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G-~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g  185 (658)
                      |.||||+|+..|+.+++++|++.++++ +..+.           . | .||||+|+..|+.+++++|++++++......|
T Consensus        95 g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-----------~-g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g  161 (285)
T 3kea_A           95 GNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGK-----------T-GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL  161 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSS-----------S-GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCC-----------C-CCCCHHHHHHHcCCHHHHHHHHhCCCccccccCC
Confidence            999999999999999999999999885 44454           5 7 89999999999999999999999865444599


Q ss_pred             hhHHHHHHhcCcHHHHHHHHHhC
Q 006173          186 FVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       186 ~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                      .||||+|+..|+.+++++|++++
T Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~g  184 (285)
T 3kea_A          162 LSCIHITIKNGHVDMMILLLDYM  184 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHcChHHHHHHHHHcC
Confidence            99999999999999999999873

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1.5e-30  Score=255.42  Aligned_cols=129  Identities=16%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      .|+|||| .|+..|+.++|+.|++..+ .+++.. |..|+||||+||..|+.+++++|++.++++.....      +.+|
T Consensus         2 ~g~t~L~-~A~~~g~~~~v~~Ll~~~g-~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~------~~~~   72 (232)
T 2rfa_A            2 IWESPLL-LAAKENDVQALSKLLKFEG-CEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM------TSEL   72 (232)
T ss_dssp             CTTCHHH-HHHHTTCHHHHHHHHTTTC-SCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC------CSTT
T ss_pred             CCCCHHH-HHHHcCCHHHHHHHHHhcC-CCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc------cccC
Confidence            4788888 8888888888888888733 347777 88888899998888888888888888876422110      1112


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCC-------------CCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLD-------------GRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~-------------~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                      . . |.||||+|+..|+.+++++|++++++ ...             |..|.||||+|+..|+.++++.|++++
T Consensus        73 ~-~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  144 (232)
T 2rfa_A           73 Y-E-GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG  144 (232)
T ss_dssp             T-T-TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT
T ss_pred             C-C-CcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            2 5 88888888888888888888888874 222             236778888888888888888777764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=3.7e-31  Score=260.65  Aligned_cols=219  Identities=11%  Similarity=0.106  Sum_probs=171.8

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCC---CCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-C
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEE---LPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-P  179 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~---l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~  179 (658)
                      |.+|+||||+|+..|+.++++.|++.++.   ..+..+.           . |.||||+|+..|+.+++++|++++++ .
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   72 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-----------L-QQTPLHLAVITNQPEIAEALLGAGCDPE   72 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-----------T-CCCHHHHHHHTTCHHHHHCCCSCCCCSC
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            89999999999999999999999988764   2344444           6 99999999999999999999999985 6


Q ss_pred             CCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCC
Q 006173          180 LDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPH  259 (658)
Q Consensus       180 ~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~  259 (658)
                      ..|..|.||||+|+..|+.++++.|++.+......                                             
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~---------------------------------------------  107 (236)
T 1ikn_D           73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH---------------------------------------------  107 (236)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS---------------------------------------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH---------------------------------------------
Confidence            78899999999999999999999999875421000                                             


Q ss_pred             CCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHH
Q 006173          260 PHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCA  339 (658)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  339 (658)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (236)
T 1ikn_D          108 --------------------------------------------------------------------------------  107 (236)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccccccc-CCChHHHHHHHhCCHhHHHHHhcCCCcccc
Q 006173          340 GAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNK-DGYDIFKVAVEHRREKVFNIIFNFPNIYPF  418 (658)
Q Consensus       340 ~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~  418 (658)
                            ......+..|.||||+|+..|+.+++++|++++ .+. +.+|. .|+||||+|+..|+.+++++|++.|+    
T Consensus       108 ------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----  175 (236)
T 1ikn_D          108 ------SILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----  175 (236)
T ss_dssp             ------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC----
T ss_pred             ------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----
Confidence                  000114456899999999999999999999999 664 55676 99999999999999999999999998    


Q ss_pred             cccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcCcchhhhccCCCCCchhhhHH
Q 006173          419 FMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVHPTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       419 ~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      +++.+|..|+||||+|+..|+.+.+           .   .+.+.-........|.+|+||.+...+
T Consensus       176 ~~~~~~~~g~tpl~~A~~~~~~~~~-----------~---~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          176 DVNRVTYQGYSPYQLTWGRPSTRIQ-----------Q---QLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             CSCCCCTTCCCGGGGCTTSSCHHHH-----------H---HHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             CCCcccCCCCCHHHHHHccCchHHH-----------H---HHHHcchhhhhcCCccchHHHHhhhcc
Confidence            7899999999999999999984211           1   111111112355789999999987643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-30  Score=265.93  Aligned_cols=250  Identities=14%  Similarity=0.071  Sum_probs=192.2

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ..+.++.+|||.||..|+.+.++.|+ +.. ..++.. +.+|.|||| .||..|+.++|++|++.+ .+ ++.. |..|.
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll-~~g-~~~~~~-~~~g~t~L~-~A~~~g~~~~v~~Ll~~g-a~-~~~~-~~~g~  107 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLL-ERG-ADINYA-NVDGLTALH-QACIDDNVDMVKFLVENG-AN-INQP-DNEGW  107 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHH-HHC-CCTTCB-CTTCCBHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTSC
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHH-HcC-CCCccc-CCCCCCHHH-HHHHcCCHHHHHHHHHCC-CC-CCCC-CCCCC
Confidence            34556889999999999999999999 543 445544 889999999 999999999999999984 33 7788 99999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC--CCCCcch
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP--LDGRQGF  186 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~g~  186 (658)
                      ||||+|+..|+.+++++|++.++++ ...+.           . |.||||+|+..|+.+++++|+......  ..+..+.
T Consensus       108 tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~  174 (299)
T 1s70_B          108 IPLHAAASCGYLDIAEYLISQGAHV-GAVNS-----------E-GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE  174 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCC-CCcCC-----------C-CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhh
Confidence            9999999999999999999999886 44455           6 999999999999999999998765421  1222223


Q ss_pred             hHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCC
Q 006173          187 VLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSEN  266 (658)
Q Consensus       187 t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  266 (658)
                      ++++        ..+..++..........+..|.||||+|+..++.                                  
T Consensus       175 ~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~----------------------------------  212 (299)
T 1s70_B          175 RIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT----------------------------------  212 (299)
T ss_dssp             HHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH----------------------------------
T ss_pred             hHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH----------------------------------
Confidence            3333        3345666666666666778899999999988522                                  


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhc
Q 006173          267 VGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILN  346 (658)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  346 (658)
                                                                                       ++++.+++    ...
T Consensus       213 -----------------------------------------------------------------~~v~~Ll~----~g~  223 (299)
T 1s70_B          213 -----------------------------------------------------------------EVLKLLIQ----ARY  223 (299)
T ss_dssp             -----------------------------------------------------------------HHHHHHHT----TTC
T ss_pred             -----------------------------------------------------------------HHHHHHHH----cCC
Confidence                                                                             12222222    223


Q ss_pred             chhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhc
Q 006173          347 THEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFN  411 (658)
Q Consensus       347 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  411 (658)
                      +.+.+|..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|++.....+.+++-+
T Consensus       224 d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad-~~~~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CD-MEAVNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CC-CCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34457788999999999999999999999999 65 56789999999999977544433334333

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=9.2e-30  Score=250.66  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=151.7

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      -++.++|+.|+..|+.+.++.++ +. +..++.+ +.+|.|||| .|+..|+.++|++|++.+ .+..... +..|.|||
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll-~~-g~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~~-~~~~~~~-~~~~~t~L   80 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELV-EA-GYDVRQP-DKENVTLLH-WAAINNRIDLVKYYISKG-AIVDQLG-GDLNSTPL   80 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHH-HT-TCCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CCTTCCB-TTTTBCHH
T ss_pred             cccchHHHHHHHcCChHHHHHHH-Hc-CCCcCCC-CCCCCCHHH-HHHHhCCHHHHHHHHHcC-Ccchhhc-CCcCCChh
Confidence            45668999999999999999999 43 3445444 788999999 999999999999999994 3434445 67799999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHH
Q 006173          112 EYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLK  190 (658)
Q Consensus       112 h~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh  190 (658)
                      |+|+..|+.+++++|++.++++ ...+.           . |.||||+|+..|+.+++++|++++++ ...+..|.||||
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  147 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADP-SLIDG-----------E-GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM  147 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-cccCC-----------C-CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHH
Confidence            9999999999999999998875 44444           6 99999999999999999999999985 678899999999


Q ss_pred             HHHhcCc-HHHHHHHHHhCCCccccccC-CCCcHhHHHhcCC
Q 006173          191 FLIDSNL-FDMALALLKCHPMIARADIG-ETGKILESLSKRP  230 (658)
Q Consensus       191 ~A~~~g~-~~iv~~LL~~~~~~~~~~d~-~g~TpLh~Aa~~~  230 (658)
                      +|+..++ .++++.|++.+.+. +..+. .|.||||+|+..+
T Consensus       148 ~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          148 WAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             HHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHT
T ss_pred             HHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcC
Confidence            9997666 78888888886655 44554 8999999999885

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=8.8e-30  Score=244.05  Aligned_cols=147  Identities=13%  Similarity=0.057  Sum_probs=118.9

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +..+.|||| .|+..|+.+.|+.|++.++ ..++.. |.+|.||||+|+..|+.+++++|++.++++ +..+.       
T Consensus         2 ~~~~~~~L~-~A~~~g~~~~v~~ll~~~~-~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-------   70 (201)
T 3hra_A            2 KTYEVGALL-EAANQRDTKKVKEILQDTT-YQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNS-------   70 (201)
T ss_dssp             -CCCTTHHH-HHHHTTCHHHHHHHHTCTT-CCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-------
T ss_pred             CcccccHHH-HHHHhccHHHHHHHHHcCC-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-------
Confidence            456889999 9999999999999998843 348888 999999999999999999999999988875 44444       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCC--CCCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhH
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR--EPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILE  224 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~--~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh  224 (658)
                          . |.||||+|+..|+.+++++|++++.  ....+..|.||||+|+..|+.++++.|+++++...+.+|.+|.||||
T Consensus        71 ----~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A           71 ----I-SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             ----T-SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             ----C-CCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence                5 9999999999999999999995544  36788889999999999999999999999875555555555555555


Q ss_pred             HHhcC
Q 006173          225 SLSKR  229 (658)
Q Consensus       225 ~Aa~~  229 (658)
                      +|+..
T Consensus       146 ~A~~~  150 (201)
T 3hra_A          146 EAVGL  150 (201)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            55444

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1.4e-29  Score=248.56  Aligned_cols=170  Identities=16%  Similarity=0.083  Sum_probs=140.4

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCcc---ccccccCCCCChH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRN---CLQNFARDEGSEY  110 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~---~l~~~~d~~G~Tp  110 (658)
                      +.||||.|+..|+.+.++.++ +..+..++.+ +.+|+|||| .|+..|+.++|++|++.+...   ..+.. |..|.||
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll-~~~g~~~~~~-~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~g~t~   78 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLL-KFEGCEVHQR-GAMGETALH-IAALYDNLEAAMVLMEAAPELVFEPMTSE-LYEGQTA   78 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHH-TTTCSCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHHCGGGGGCCCCST-TTTTCCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-HhcCCCcccC-CCCCCCHHH-HHHHcCCHHHHHHHHHcCchhcccccccc-CCCCcCH
Confidence            569999999999999999999 6546666655 889999999 999999999999999995321   12556 7899999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCccccc--CCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchh
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVE--KKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFV  187 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~--~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t  187 (658)
                      ||+|+..|+.+++++|++.++++......  ...+++..|. . |.||||+|+..|+.+++++|++++++ +.+|..|.|
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~-~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t  156 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY-Y-GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT  156 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCC-C-CSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeeccccccc-C-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            99999999999999999999886443221  0112233333 5 99999999999999999999999986 678999999


Q ss_pred             HHHHHHhcCcHHHH----HHHHHhCC
Q 006173          188 LLKFLIDSNLFDMA----LALLKCHP  209 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv----~~LL~~~~  209 (658)
                      |||+|+..|+.+++    +.|++.+.
T Consensus       157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          157 VLHILILQPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            99999999999988    77776643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=2.8e-30  Score=260.37  Aligned_cols=159  Identities=16%  Similarity=0.143  Sum_probs=120.4

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhcC---Cccccc----cccCCCCChHHHHHHhc---CCHHHHHHHHhcCCCCCc
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSKV---PRNCLQ----NFARDEGSEYMEYAVST---GKLNLITTLMGYNEELPN  135 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~---~~~~l~----~~~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~l~~  135 (658)
                      .+.+|+|||| .||..|+.++|+.|++.+   +.+ ++    .. |..|+||||+||..   |+.++|++|++.+++...
T Consensus         9 ~d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~-~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            9 PRLYDRRSIF-DAVAQSNCQELESLLPFLQRSKKR-LTDSEFKD-PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             --CCCHHHHH-HHHHTTCSSTTTTHHHHHHHSCCC-TTSGGGSC-TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCcccchHHH-HHHHcCCHHHHHHHHHHHhhcccc-cCCccccc-CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            3788999999 999999999999999853   222 22    35 78999999999986   999999999998765322


Q ss_pred             ccccCCCCCCCcccC-CCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCC--------------cchhHHHHHHhcCcHH
Q 006173          136 IKVEKKDDPNIKDEE-KDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGR--------------QGFVLLKFLIDSNLFD  199 (658)
Q Consensus       136 ~~~~~~~d~~~~~~~-~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~--------------~g~t~Lh~A~~~g~~~  199 (658)
                      ....  .+.+..+.+ . |.||||+|+..|+.++|++|++++++ ...+.              .|.||||+|+..|+.+
T Consensus        86 ~~~~--i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           86 LKQF--VNASYTDSYYK-GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             HHHH--HTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             hhHH--hhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            1100  001111111 5 99999999999999999999999985 44554              7999999999999999


Q ss_pred             HHHHHHHh--CCCccccccCCCCcHhHHHhcCC
Q 006173          200 MALALLKC--HPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       200 iv~~LL~~--~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      ++++|++.  .+...+.+|.+|.||||+|+..+
T Consensus       163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~  195 (273)
T 2pnn_A          163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVA  195 (273)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHHhcccCCCCceeeCCCCCcHHHHHHHcc
Confidence            99999994  34455667777777777777653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=7.3e-29  Score=237.61  Aligned_cols=102  Identities=7%  Similarity=-0.005  Sum_probs=87.0

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      +..+.||||.||..|+.+.++.|+..++..++..+.           . |.||||+|+..|+.+++++|++++++ +..+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   69 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-----------E-GNTPLNIAVHNNDIEIAKALIDRGADINLQN   69 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            567999999999999999999999988744455555           6 99999999999999999999999985 6788


Q ss_pred             CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccC
Q 006173          183 RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIG  217 (658)
Q Consensus       183 ~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~  217 (658)
                      ..|.||||+|+..|+.++++.|++..+...+.+|.
T Consensus        70 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  104 (201)
T 3hra_A           70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR  104 (201)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccC
Confidence            99999999999999999999999775544333333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1.8e-29  Score=251.77  Aligned_cols=154  Identities=18%  Similarity=0.146  Sum_probs=116.7

Q ss_pred             CCCcHHHHhhhcCCChH----HHHHHHhcCCcccccc----ccCCCCChHHHHHHhc---CCHHHHHHHHhcCCCCCccc
Q 006173           69 QSSIFEFIVGIPDVPAT----LVDKLLSKVPRNCLQN----FARDEGSEYMEYAVST---GKLNLITTLMGYNEELPNIK  137 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~----iv~~Ll~~~~~~~l~~----~~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~l~~~~  137 (658)
                      .|+|||| .||..|+.+    ++++|++.+ .+ ++.    . |..|+||||+||..   |+.+++++|++.+++.....
T Consensus         1 ~G~t~L~-~A~~~g~~~~v~~ll~~l~~~g-~~-i~~~~~~~-d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   76 (256)
T 2etb_A            1 FDRDRLF-SVVSRGVPEELTGLLEYLRWNS-KY-LTDSAYTE-GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK   76 (256)
T ss_dssp             CCHHHHH-HHHHHTCGGGGTTHHHHHHHHT-CC-TTSGGGSB-TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS
T ss_pred             CCccHHH-HHHHcCCHHHHHHHHHHHHHcC-CC-cccccccC-CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh
Confidence            4789999 999999997    445666663 33 665    7 89999999999999   99999999999887653222


Q ss_pred             ccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCc-------------chhHHHHHHhcCcHHHHHH
Q 006173          138 VEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQ-------------GFVLLKFLIDSNLFDMALA  203 (658)
Q Consensus       138 ~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~-------------g~t~Lh~A~~~g~~~iv~~  203 (658)
                      ..  .+.+..+.+..|.||||+|+..|+.+++++|++++++ +..+..             |.||||+|+..|+.+++++
T Consensus        77 ~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  154 (256)
T 2etb_A           77 PL--VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY  154 (256)
T ss_dssp             CG--GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hh--cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence            10  0111222222299999999999999999999999985 445554             9999999999999999999


Q ss_pred             HHHh--CCCccccccCCCCcHhHHHhc
Q 006173          204 LLKC--HPMIARADIGETGKILESLSK  228 (658)
Q Consensus       204 LL~~--~~~~~~~~d~~g~TpLh~Aa~  228 (658)
                      |+++  .+...+.+|.+|.||||+|+.
T Consensus       155 Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          155 LLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             HHhccccCCCcCccCCCCCCHHHHHHH
Confidence            9994  344456666667777776665

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=1.8e-28  Score=227.47  Aligned_cols=156  Identities=16%  Similarity=0.193  Sum_probs=138.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      ++|+.||+.|+.+.|+.|| + .+.+++.+ |.+|+|||| .|+..|+.++++.|++.+ .+ ++.+ |.+|+||||+||
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll-~-~Gadvn~~-d~~g~t~l~-~a~~~~~~~~~~~ll~~g-ad-~~~~-d~~g~TpLh~A~   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLI-E-NGADVNAS-DSDGRTPLH-HAAENGHKEVVKLLISKG-AD-VNAK-DSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-H-TTCCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHH-H-CCCCCCCc-CCCCCCHHH-HHHHcCCHHHHHHHHhcc-cc-hhhh-ccCCCCHHHHHH
Confidence            5799999999999999999 4 45556655 889999999 999999999999999994 34 7888 999999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHh
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLID  194 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~  194 (658)
                      ..|+.++|++|+++++++ +.++.           . |+||||+||..|+.++|++|++++++ ..+|..|.||||+|+.
T Consensus        79 ~~g~~~~v~~Ll~~gadv-n~~d~-----------~-G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~  145 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADV-NAKDS-----------D-GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE  145 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHCcCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            999999999999999886 45555           6 99999999999999999999999996 6789999999999999


Q ss_pred             cCcHHHHHHHHHhCCCc
Q 006173          195 SNLFDMALALLKCHPMI  211 (658)
Q Consensus       195 ~g~~~iv~~LL~~~~~~  211 (658)
                      .|+.+++++|++++.++
T Consensus       146 ~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          146 HGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             TTCHHHHHHHHTC----
T ss_pred             cCCHHHHHHHHHCCCCc
Confidence            99999999999987654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=6.3e-29  Score=250.42  Aligned_cols=175  Identities=14%  Similarity=0.139  Sum_probs=133.8

Q ss_pred             hhhhhhhhHHHHHHHHhCCHHHHHHHHhhc---Cccccc---ccccCCCCcHHHHhhhcC---CChHHHHHHHhcCCcc-
Q 006173           28 IIKDIDSYKQVTRYILENDWKGLEDYIMSK---TPNALT---CIIVDQSSIFEFIVGIPD---VPATLVDKLLSKVPRN-   97 (658)
Q Consensus        28 ~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~---~~~~~~---~~~~~~g~T~Lh~~Aa~~---g~~~iv~~Ll~~~~~~-   97 (658)
                      ...+.++.+|||.||..|+.+.++.|+ +.   .+..++   ...+..|+|||| .||..   |+.++|++|++.+... 
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~~~~g~tpL~-~A~~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLL-PFLQRSKKRLTDSEFKDPETGKTCLL-KAMLNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHH-HHHHHSCCCTTSGGGSCTTTCCCHHH-HHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHH-HHHhhcccccCCcccccCcCCCCHHH-HHHHHHhcCChHHHHHHHHhhcccc
Confidence            345667899999999999999999998 42   222222   134779999999 99976   9999999999985210 


Q ss_pred             --------ccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCccccc---CCCCCCCcccCCCCCcHHHHHHHhCcH
Q 006173           98 --------CLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVE---KKDDPNIKDEEKDDLLPVHMAAKAGKR  166 (658)
Q Consensus        98 --------~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~---~~~d~~~~~~~~~G~TpLh~Aa~~g~~  166 (658)
                              ..... |..|.||||+|+..|+.++|++|++.++++......   ...+.+..+. . |.||||+|+..|+.
T Consensus        85 ~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~-~-g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           85 SLKQFVNASYTDS-YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY-F-GELPLSLAACTNQL  161 (273)
T ss_dssp             CHHHHHTCCCCST-TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCC-S-CBSHHHHHHHTTCH
T ss_pred             chhHHhhcccccc-cCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccccccc-C-CCCHHHHHHHcCCH
Confidence                    12225 779999999999999999999999999886443320   0011112222 4 99999999999999


Q ss_pred             HHHHHhcc---CCCC-CCCCCcchhHHHHHHhcCc---------HHHHHHHHHh
Q 006173          167 DAVRHLLP---KTRE-PLDGRQGFVLLKFLIDSNL---------FDMALALLKC  207 (658)
Q Consensus       167 ~iv~~Ll~---~~~~-~~~~~~g~t~Lh~A~~~g~---------~~iv~~LL~~  207 (658)
                      +++++|++   ++++ +.+|..|.||||+|+..|+         .++++.|++.
T Consensus       162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~  215 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL  215 (273)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh
Confidence            99999999   7775 6789999999999999887         6777777765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2.2e-29  Score=260.62  Aligned_cols=275  Identities=10%  Similarity=-0.007  Sum_probs=184.3

Q ss_pred             CCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccc--cCCCCCC
Q 006173           68 DQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKV--EKKDDPN  145 (658)
Q Consensus        68 ~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~--~~~~d~~  145 (658)
                      ..+.+|+|     ..+.++|++|++.| .+ ++.. |..|.|++|     |+.++|+.|++++.+......  ....+..
T Consensus        21 ~~~~~~~~-----~~~~dlv~~ll~~g-a~-i~~~-~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~   87 (327)
T 1sw6_A           21 DRTAGPII-----TFTHDLTSDFLSSP-LK-IMKA-LPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSS   87 (327)
T ss_dssp             ----CCEE-----ECCTTCCCSTTTSS-CC-CEEC-BCCCCCCCH-----HHHHHHHHHHHHHHC---------------
T ss_pred             cccccchh-----hhcCchHHHHhhCC-cc-cccC-CCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccc
Confidence            34456666     35568899999994 34 7888 999999988     999999999999865321000  0000000


Q ss_pred             CcccCC--CCCcHHHHHHHhCcHHHHHHhccCCCC-CC-CCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCc
Q 006173          146 IKDEEK--DDLLPVHMAAKAGKRDAVRHLLPKTRE-PL-DGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGK  221 (658)
Q Consensus       146 ~~~~~~--~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~-~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~T  221 (658)
                      -++...  ...+.+|+|+..+..+++++|++.+.+ +. +|..|.||||+|+..|+.+++++||+++. .++.+|.+|.|
T Consensus        88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga-d~n~~d~~g~T  166 (327)
T 1sw6_A           88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYGDNMGES  166 (327)
T ss_dssp             ----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBCCTTCCC
T ss_pred             cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCC
Confidence            000001  022346899999999999999999985 55 79999999999999999999999999864 45789999999


Q ss_pred             HhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHH
Q 006173          222 ILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQK  301 (658)
Q Consensus       222 pLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (658)
                      |||+|+..++..                                                                    
T Consensus       167 pLh~A~~~g~~~--------------------------------------------------------------------  178 (327)
T 1sw6_A          167 CLVKAVKSVNNY--------------------------------------------------------------------  178 (327)
T ss_dssp             HHHHHHHSSHHH--------------------------------------------------------------------
T ss_pred             HHHHHHHhcccc--------------------------------------------------------------------
Confidence            999999985210                                                                    


Q ss_pred             HHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHH----hCcHHHHHHHHhh
Q 006173          302 LKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAAR----LGIYEIVMGIMNS  377 (658)
Q Consensus       302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~----~G~~~~v~~Ll~~  377 (658)
                                                  ..+.+..+++.+   ..+.+.+|..|+||||+|+.    .|+.++++.|++.
T Consensus       179 ----------------------------~~~~~~~ll~~~---~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          179 ----------------------------DSGTFEALLDYL---YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             ----------------------------HTTCHHHHHHHH---GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             ----------------------------cHHHHHHHHHhh---hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence                                        000011111111   12234577889999999999    9999999999987


Q ss_pred             cCC-------------------CcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcC
Q 006173          378 YFP-------------------WSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSV  438 (658)
Q Consensus       378 ~~~-------------------~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g  438 (658)
                      + .                   ..++.+|..|+||||.|+.      +++|++.      .+|.+|.+|+||||+|++.|
T Consensus       228 ~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~------~~n~~d~~G~TpLh~A~~~g  294 (327)
T 1sw6_A          228 L-MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN------MLNAQDSNGDTCLNIAARLG  294 (327)
T ss_dssp             H-HHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH------TTTCCCTTSCCHHHHHHHHC
T ss_pred             H-HHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh------CCCCCCCCCCCHHHHHHHcC
Confidence            2 1                   2356678999999999985      8899988      47999999999999999999


Q ss_pred             CCCCCChhHHhhHHHHHHHHHHHhhcC-cchhhhccCCCCCchhhhHH
Q 006173          439 PSTEVPGAALQMQRELQWFKAVENCVH-PTLQDQLNDKDKTPREVFTK  485 (658)
Q Consensus       439 ~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n~~G~Tp~dl~~~  485 (658)
                      +.+.                 ++.++. ....+.+|++|+||++++.+
T Consensus       295 ~~~~-----------------v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          295 NISI-----------------VDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             CHHH-----------------HHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             CHHH-----------------HHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            8422                 121111 22367899999999998743

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=3.5e-28  Score=242.46  Aligned_cols=172  Identities=14%  Similarity=0.051  Sum_probs=132.1

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhh---cCcccccc---cccCCCCcHHHHhhhcC---CChHHHHHHHhcCCccc-----c
Q 006173           34 SYKQVTRYILENDWKGLEDYIMS---KTPNALTC---IIVDQSSIFEFIVGIPD---VPATLVDKLLSKVPRNC-----L   99 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~---~~~~~~~~---~~~~~g~T~Lh~~Aa~~---g~~~iv~~Ll~~~~~~~-----l   99 (658)
                      +.+|||.||..|+.+.++.++ +   ..+..++.   ..+.+|+|||| .|+..   |+.++|++|++.+....     +
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll-~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLL-EYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHH-HHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHH-HHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            579999999999998665544 2   33444554   24889999999 99999   99999999999852210     1


Q ss_pred             ----ccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcc-
Q 006173          100 ----QNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLP-  174 (658)
Q Consensus       100 ----~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~-  174 (658)
                          ... |..|.||||+|+..|+.+++++|++.++++..........++....+.+|.||||+|+..|+.+++++|++ 
T Consensus        80 ~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDE-FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCST-TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccc-cccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                123 57899999999999999999999999988643322111111222222239999999999999999999999 


Q ss_pred             --CCCC-CCCCCcchhHHHHHHh--cCcHH-------HHHHHHHhC
Q 006173          175 --KTRE-PLDGRQGFVLLKFLID--SNLFD-------MALALLKCH  208 (658)
Q Consensus       175 --~~~~-~~~~~~g~t~Lh~A~~--~g~~~-------iv~~LL~~~  208 (658)
                        ++++ +.+|..|.||||+|+.  .++.+       +++.|++.+
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g  204 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG  204 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC
Confidence              7875 6889999999999998  77887       777777763

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=3.9e-28  Score=242.68  Aligned_cols=159  Identities=16%  Similarity=0.099  Sum_probs=121.6

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHh----cCCccccccc---cCCCCChHHHHHH---hcCCHHHHHHHHhcCCCCCcc
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLS----KVPRNCLQNF---ARDEGSEYMEYAV---STGKLNLITTLMGYNEELPNI  136 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~----~~~~~~l~~~---~d~~G~TpLh~Aa---~~G~~~iv~~Ll~~~~~l~~~  136 (658)
                      +..|+|+|| .||+.|+.+.|+.|++    .+ .+ ++..   .|..|.||||+|+   +.|+.+++++|++.+++....
T Consensus         2 ~~~~~~~L~-~A~~~g~~~~v~~ll~~l~~~~-~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            2 KVFNRPILF-DIVSRGSPDGLEGLLSFLLTHK-KR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             CCCCHHHHH-HHHHHTCGGGGTTHHHHHHHHT-CC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHH-HHHHhCCHHHHHHHHHHHHhcC-CC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence            567889999 9999999996666665    53 22 4433   0377999999999   779999999999987643221


Q ss_pred             cccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC--------------CcchhHHHHHHhcCcHHHH
Q 006173          137 KVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG--------------RQGFVLLKFLIDSNLFDMA  201 (658)
Q Consensus       137 ~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~--------------~~g~t~Lh~A~~~g~~~iv  201 (658)
                      ......+.+.+|. . |+||||+||..|+.++|++|++++++ +..+              ..|.||||+|+..|+.+++
T Consensus        79 ~~~~~~~~~~~d~-~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  156 (260)
T 3jxi_A           79 REFINSPFRDVYY-R-GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV  156 (260)
T ss_dssp             HHHHTCCBCCSSE-E-SBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred             Hhhhccccccccc-C-CCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence            1100011111222 5 99999999999999999999999985 4455              5899999999999999999


Q ss_pred             HHHHHh--CCCccccccCCCCcHhHHHhcCC
Q 006173          202 LALLKC--HPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       202 ~~LL~~--~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      ++|++.  .+..++.+|.+|.||||+|++.+
T Consensus       157 ~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~  187 (260)
T 3jxi_A          157 HYLTENGHKQADLRRQDSRGNTVLHALVAIA  187 (260)
T ss_dssp             HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHhccccCCCCcccCCCCCcHHHHHHHhc
Confidence            999994  35566889999999999999764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=3.6e-29  Score=261.84  Aligned_cols=167  Identities=13%  Similarity=0.099  Sum_probs=101.5

Q ss_pred             hhhhhHHHHHHHH-hCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCcc-ccccccCCCCC
Q 006173           31 DIDSYKQVTRYIL-ENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRN-CLQNFARDEGS  108 (658)
Q Consensus        31 ~~~~~~~L~~A~~-~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~-~l~~~~d~~G~  108 (658)
                      ...+.+.++.|.. .++.+.++.++ +.         +.+++|||| .||..|+.++|++|++.+.+. ..+.. |..|.
T Consensus        62 ~~~~ll~~~~a~~~~~~~~~~~~l~-~~---------g~~~~T~Lh-~Aa~~G~~e~v~~Ll~~ga~~~~~~~~-~~~~~  129 (376)
T 2aja_A           62 QVRQLLCLYYAHYNRNAKQLWSDAH-KK---------GIKSEVICF-VAAITGCSSALDTLCLLLTSDEIVKVI-QAENY  129 (376)
T ss_dssp             HHHHHHHHHHHHTTTTCTTHHHHHH-HH---------TCCHHHHHH-HHHHHCCHHHHHHHTTC--CCSSCC---CHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHH-Hc---------CCCcCCHHH-HHHHcCCHHHHHHHHHcCCcHHHHHHh-ccCCC
Confidence            3345555666555 35555555555 22         223457777 777777777777777764322 11223 55667


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCC--cccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC-C--CCC
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELP--NIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP-L--DGR  183 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~--~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~--~~~  183 (658)
                      ||||+||..|+.++|++|++.+++..  ....            . +.||||+||..|+.++|++|++++++. .  .|.
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~------------~-~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~  196 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQA------------E-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQA  196 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH------------H-HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCC------------C-CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCC
Confidence            77777777777777777777775421  1112            2 467777777777777777777777642 2  566


Q ss_pred             cchhHHHHHH-hcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          184 QGFVLLKFLI-DSNLFDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       184 ~g~t~Lh~A~-~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      .|.||||+|+ ..|+.+++++|++.+ .       .|.||||+|+++|
T Consensus       197 ~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g  236 (376)
T 2aja_A          197 ENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYG  236 (376)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTT
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCC
Confidence            6777777777 777777777777632 1       2667777777765

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=5.5e-27  Score=217.43  Aligned_cols=154  Identities=19%  Similarity=0.253  Sum_probs=135.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchh
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFV  187 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t  187 (658)
                      ++|+.||+.|+.++|+.|++.|+++ +.++.           . |+||||+|+..|+.+++++|++++++ ..+|.+|.|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~-----------~-g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~T   72 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDS-----------D-GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT   72 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-----------C-CCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCC
Confidence            5799999999999999999999886 45555           6 99999999999999999999999995 678999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENV  267 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  267 (658)
                      |||+|+..|+.++++.|++++.++ +.                                                     
T Consensus        73 pLh~A~~~g~~~~v~~Ll~~gadv-n~-----------------------------------------------------   98 (169)
T 4gpm_A           73 PLHHAAENGHKEVVKLLISKGADV-NA-----------------------------------------------------   98 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TC-----------------------------------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCC-CC-----------------------------------------------------
Confidence            999999999999999999875432 11                                                     


Q ss_pred             CCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcc
Q 006173          268 GGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNT  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  347 (658)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (169)
T 4gpm_A           99 --------------------------------------------------------------------------------   98 (169)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          348 HEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       348 ~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                         +|.+|+||||+|+..|+.+++++|++++ .+ ++.+|.+|+||||+|+.+|+.+++++|++.|+
T Consensus        99 ---~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           99 ---KDSDGRTPLHHAAENGHKEVVKLLISKG-AD-VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             ---CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             ---CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence               3456889999999999999999999998 65 56789999999999999999999999999998

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=1.1e-27  Score=241.59  Aligned_cols=195  Identities=13%  Similarity=0.173  Sum_probs=165.0

Q ss_pred             CCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCc
Q 006173           68 DQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIK  147 (658)
Q Consensus        68 ~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~  147 (658)
                      ..+++++| .|+..|+.+.++.+++.+....++.. |.+|+||||+||..|+.++|++|++.++...+..+.        
T Consensus        74 ~~~~~~l~-~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~--------  143 (276)
T 4hbd_A           74 LACRSDAH-PELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR--------  143 (276)
T ss_dssp             HHHSTTCC-HHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT--------
T ss_pred             HHhccCCC-HHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC--------
Confidence            34578999 99999999999999987544457888 999999999999999999999999999844566666        


Q ss_pred             ccCCCCCcHHHHHH-----HhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCc
Q 006173          148 DEEKDDLLPVHMAA-----KAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGK  221 (658)
Q Consensus       148 ~~~~~G~TpLh~Aa-----~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~T  221 (658)
                         . |.||||+|+     ..++.+++++|++.+.. ...+..|.||||+|+..|+.++++.|++.+.+. +        
T Consensus       144 ---~-g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n--------  210 (276)
T 4hbd_A          144 ---A-GYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-N--------  210 (276)
T ss_dssp             ---T-SCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-T--------
T ss_pred             ---C-CCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-C--------
Confidence               6 999999999     67889999999999984 567788999999999999999999999874332 1        


Q ss_pred             HhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHH
Q 006173          222 ILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQK  301 (658)
Q Consensus       222 pLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (658)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (276)
T 4hbd_A          211 --------------------------------------------------------------------------------  210 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCC
Q 006173          302 LKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPW  381 (658)
Q Consensus       302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~  381 (658)
                                                                      .+|..|+||||+|+..|+.+++++|++.. ..
T Consensus       211 ------------------------------------------------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~-ga  241 (276)
T 4hbd_A          211 ------------------------------------------------VQDDDGSTALMCACEHGHKEIAGLLLAVP-SC  241 (276)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHHTST-TC
T ss_pred             ------------------------------------------------CCCCCCCCHHHHHHHCCCHHHHHHHHhcC-CC
Confidence                                                            13456889999999999999999999943 34


Q ss_pred             cccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          382 SLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       382 ~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      .++.+|.+|+||||+|+.+|+.+++++|+++..
T Consensus       242 d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          242 DISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            567789999999999999999999999998743

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=8.7e-28  Score=240.12  Aligned_cols=206  Identities=14%  Similarity=0.066  Sum_probs=160.1

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhh---cCccccccc---ccCCCCcHHHHhhh---cCCChHHHHHHHhcCCc------
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMS---KTPNALTCI---IVDQSSIFEFIVGI---PDVPATLVDKLLSKVPR------   96 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~---~~~~~~~~~---~~~~g~T~Lh~~Aa---~~g~~~iv~~Ll~~~~~------   96 (658)
                      ..+.++||.||+.|+.+.++.++ +   ..+..++..   .+.+|+|||| .|+   ..|+.++|++|++.+..      
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll-~~l~~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLL-SFLLTHKKRLTDEEFREPSTGKTCLP-KALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHH-HHHHHHTCCTTSGGGSCTTTCCCHHH-HHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHH-HHHHhcCCCcchhhhhccCCCCcHHH-HHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            34679999999999999887777 4   233333322   2477999999 999   78999999999998521      


Q ss_pred             ---cccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccC---CCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 006173           97 ---NCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEK---KDDPNIKDEEKDDLLPVHMAAKAGKRDAVR  170 (658)
Q Consensus        97 ---~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~---~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~  170 (658)
                         ..++.. |..|+||||+||..|+.++|++|++.++++.......   ..|.+..+. . |+||||+|+..|+.++|+
T Consensus        81 ~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~-~-g~tpL~~A~~~g~~~~v~  157 (260)
T 3jxi_A           81 FINSPFRDV-YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY-F-GELPLSLAACTNQPHIVH  157 (260)
T ss_dssp             HHTCCBCCS-SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCC-S-CSSHHHHHHHTTCHHHHH
T ss_pred             hhccccccc-ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccccc-C-CCCHHHHHHHcCCHHHHH
Confidence               124455 6699999999999999999999999998864433210   001111111 5 999999999999999999


Q ss_pred             Hhcc---CCCC-CCCCCcchhHHHHHHhcCc---------HHHHHHHHHhCCCcc------ccccCCCCcHhHHHhcCCC
Q 006173          171 HLLP---KTRE-PLDGRQGFVLLKFLIDSNL---------FDMALALLKCHPMIA------RADIGETGKILESLSKRPK  231 (658)
Q Consensus       171 ~Ll~---~~~~-~~~~~~g~t~Lh~A~~~g~---------~~iv~~LL~~~~~~~------~~~d~~g~TpLh~Aa~~~~  231 (658)
                      +|++   ++++ +.+|..|.||||+|+..++         .++++.|++++.+..      +.+|.+|.||||+|++.+ 
T Consensus       158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g-  236 (260)
T 3jxi_A          158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG-  236 (260)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT-
T ss_pred             HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC-
Confidence            9999   7775 6889999999999998887         799999999855432      678999999999999996 


Q ss_pred             CCCCCCCcchhhhhhccc
Q 006173          232 AFASGSRLGSWKRLLYQW  249 (658)
Q Consensus       232 ~~~s~~~l~~~~~~i~~~  249 (658)
                            +.++++.++...
T Consensus       237 ------~~~~v~~Ll~~g  248 (260)
T 3jxi_A          237 ------KIGIFQHIIRRE  248 (260)
T ss_dssp             ------CHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHhC
Confidence                  346777776554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=1e-26  Score=216.81  Aligned_cols=168  Identities=11%  Similarity=0.069  Sum_probs=141.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHH
Q 006173           35 YKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYA  114 (658)
Q Consensus        35 ~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~A  114 (658)
                      .+|||.||..|+.+.++.++ +..+..++.+ +..|+|||| .|+..|+.++|++|++.+ .+ ++.. |..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~A   76 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHL-RKGDNLVNKP-DERGFTPLI-WASAFGEIETVRFLLEWG-AD-PHIL-AKERESALSLA   76 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHH-TTCSGGGGCC-CTTSCCHHH-HHHHTTCHHHHHHHHHHT-CC-TTCC-CTTCCCHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHH-HcCcccccCC-CCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-chhh-cccCCCHHHHH
Confidence            47899999999999999999 6655545544 889999999 999999999999999994 33 7788 99999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHH
Q 006173          115 VSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLI  193 (658)
Q Consensus       115 a~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~  193 (658)
                      +..|+.+++++|++.++++ +..+.           . |+||||+|+..|+.+++++|++++++ ..+|..|.||||+|+
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  143 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDI-NIYDW-----------N-GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV  143 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHCCCHHHHHHHHHcCCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            9999999999999998885 44455           6 99999999999999999999999985 678999999999999


Q ss_pred             hcCcHHHHHHHHHhCCCccccccCCCCcH
Q 006173          194 DSNLFDMALALLKCHPMIARADIGETGKI  222 (658)
Q Consensus       194 ~~g~~~iv~~LL~~~~~~~~~~d~~g~Tp  222 (658)
                      ..|+.++++.|+++..+. ..++..|.||
T Consensus       144 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~p  171 (172)
T 3v30_A          144 ALGYRKVQQVIENHILKL-FQSNLVPADP  171 (172)
T ss_dssp             HHTCHHHHHHHHHHHHHH-SCC-------
T ss_pred             HhCcHHHHHHHHHHHHHH-hcccCCCCCC
Confidence            999999999999986543 4556666665

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=6.7e-28  Score=252.24  Aligned_cols=174  Identities=9%  Similarity=0.019  Sum_probs=136.2

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhhcCc-ccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCcc-ccccccCCCC
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMSKTP-NALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRN-CLQNFARDEG  107 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~-~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~-~l~~~~d~~G  107 (658)
                      .+.+..||||.||+.|+.+.++.|+ +... ......++..|.|||| .||..|+.++|++|++++... ..+.. +.+ 
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll-~~ga~~~~~~~~~~~~~tpL~-~Aa~~G~~eiv~~Ll~~gad~~~~~i~-~~~-  163 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLC-LLLTSDEIVKVIQAENYQAFR-LAAENGHLHVLNRLCELAPTEIMAMIQ-AEN-  163 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHT-TC--CCSSCC--CHHHHHHHH-HHHHTTCHHHHHHHHHSCTTTHHHHHS-HHH-
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHH-HcCCcHHHHHHhccCCCCHHH-HHHHcCCHHHHHHHHhCCCCccccccC-CCC-
Confidence            3445679999999999999999999 4432 1122233567899999 999999999999999996321 01222 223 


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCCCCc-ccccCCCCCCCcccCCCCCcHHHHHH-HhCcHHHHHHhccCCCCCCCCCcc
Q 006173          108 SEYMEYAVSTGKLNLITTLMGYNEELPN-IKVEKKDDPNIKDEEKDDLLPVHMAA-KAGKRDAVRHLLPKTREPLDGRQG  185 (658)
Q Consensus       108 ~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~-~~~~~~~d~~~~~~~~~G~TpLh~Aa-~~g~~~iv~~Ll~~~~~~~~~~~g  185 (658)
                      .||||+||..|+.++|++|+++++++.. ..+.           . |.||||+|| ..|+.++|++|+++++      .|
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~-----------~-g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~  225 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQA-----------E-NYYAFRWAAVGRGHHNVINFLLDCPV------ML  225 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH-----------H-HHHHHHHHHSTTCCHHHHHHHTTSHH------HH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCC-----------C-CCCHHHHHHHHCCCHHHHHHHHhCCC------cc
Confidence            9999999999999999999999988643 2455           5 999999999 9999999999999764      48


Q ss_pred             hhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCC
Q 006173          186 FVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRP  230 (658)
Q Consensus       186 ~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~  230 (658)
                      .||||+|+..|+.+++++|++++.+. +.+    .++++.|+..|
T Consensus       226 ~taL~~Aa~~g~~evv~lL~~~ga~~-~~~----~~~l~~A~~~g  265 (376)
T 2aja_A          226 AYAEIHEFEYGEKYVNPFIARHVNRL-KEM----HDAFKLSNPDG  265 (376)
T ss_dssp             HHHHHCTTTTTTTTHHHHHHHHHHHH-HHH----HTTTTTTSSSS
T ss_pred             chHHHHHHHCCCHHHHHHHHhcCccc-ccc----cHHHHHHHHCC
Confidence            99999999999999999999985443 222    24788887775

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=7.4e-28  Score=235.58  Aligned_cols=200  Identities=14%  Similarity=0.051  Sum_probs=129.4

Q ss_pred             HHHHhcCC-ccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcH
Q 006173           88 DKLLSKVP-RNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKR  166 (658)
Q Consensus        88 ~~Ll~~~~-~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~  166 (658)
                      +.|++.+. ++..+.. +..|.||||+||..|+.+++++|++.++++ +..+.           . |+||||+||..|+.
T Consensus         2 ~~ll~~~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-----------~-g~tpLh~A~~~g~~   67 (229)
T 2vge_A            2 RSVLRKAGSPRKARRA-RLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNE-----------E-GITALHNAICGANY   67 (229)
T ss_dssp             --------CCCCCCCT-TSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCT-----------T-SCCHHHHHHHTTCH
T ss_pred             eehhccCCCCcccccc-ccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCC-----------C-CCCHHHHHHHcCCH
Confidence            44555542 2223333 556667777777777777777777776654 33444           4 77777777777777


Q ss_pred             HHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhh
Q 006173          167 DAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRL  245 (658)
Q Consensus       167 ~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~  245 (658)
                      +++++|++++++ +..|..|.||||+|+..|+.+++++|++.+.+.....+.                            
T Consensus        68 ~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~----------------------------  119 (229)
T 2vge_A           68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS----------------------------  119 (229)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSS----------------------------
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCC----------------------------
Confidence            777777777764 456667777777777777777777777664433111112                            


Q ss_pred             hcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhh
Q 006173          246 LYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKI  325 (658)
Q Consensus       246 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  325 (658)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (229)
T 2vge_A          120 --------------------------------------------------------------------------------  119 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHH--HHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCH
Q 006173          326 IHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKA--ARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRRE  403 (658)
Q Consensus       326 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~A--a~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  403 (658)
                                                  .|+||||+|  +..|+.+++++|++.+ ++ ++.+|..|.||+|.++.... 
T Consensus       120 ----------------------------~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~-~~~~~~~~~~~l~~~~~~~~-  168 (229)
T 2vge_A          120 ----------------------------DGATAFEKCDPYREGYADCATYLADVE-QS-MGLMNSGAVYALWDYSAEFG-  168 (229)
T ss_dssp             ----------------------------TTCCTGGGCCTTSTTHHHHHHHHHHHH-HH-TTTSGGGEEEESSCBCCSST-
T ss_pred             ----------------------------CCCCHHHHHHHHhcChHHHHHHHHHcC-CC-cccccCCchHHHHHHhhccc-
Confidence                                        345555555  5667778888888888 54 55568888888886554433 


Q ss_pred             hHHHHHhcCCCcccccccccccCCCchhhhHhhcCCCCCCC
Q 006173          404 KVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPSTEVP  444 (658)
Q Consensus       404 ~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~  444 (658)
                        .++|++.|++  ..++.+|.+|+||||+|++.|+.+.+.
T Consensus       169 --~~~ll~~ga~--~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          169 --DELSFREGES--VTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             --TBCCBCTTCE--EEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             --cccCcccccc--ccccccCCCcccHHHHHHHcCCcceee
Confidence              3577788762  247899999999999999999875553

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1.2e-25  Score=207.16  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=137.6

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      ..+|||.|+..|+.+.++.++ + .+..++.+ +..|+|||| .|+. |+.+++++|++.+ .+ ++.+ |..|.||||+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll-~-~~~~~~~~-~~~g~t~L~-~A~~-~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~   76 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLL-Q-NNVNVNAQ-NGFGRTALQ-VMKL-GNPEIARRLLLRG-AN-PDLK-DRTGFAVIHD   76 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHT-T-SCCCTTCC-CTTSCCHHH-HCCS-SCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHH-h-CCCCcccc-CccCccHHH-HHHc-CcHHHHHHHHHcC-CC-CCCC-CCCCCCHHHH
Confidence            458999999999999999999 4 44445444 889999999 9999 9999999999994 33 7788 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC--CCCCCcchhHHHH
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE--PLDGRQGFVLLKF  191 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~g~t~Lh~  191 (658)
                      |+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++  ...+..|.||||+
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~  143 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADV-NIEDN-----------E-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  143 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCcCC-----------C-CCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHH
Confidence            99999999999999998875 44555           6 99999999999999999999999985  6889999999999


Q ss_pred             HHhcCcHHHHHHHHHhCC
Q 006173          192 LIDSNLFDMALALLKCHP  209 (658)
Q Consensus       192 A~~~g~~~iv~~LL~~~~  209 (658)
                      |+..|+.+++++|++++.
T Consensus       144 A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          144 ARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHTTCHHHHHHHHHTC-
T ss_pred             HHHcCCHHHHHHHHHhCC
Confidence            999999999999999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=4.7e-26  Score=212.38  Aligned_cols=169  Identities=18%  Similarity=0.138  Sum_probs=137.1

Q ss_pred             CChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcc
Q 006173          107 GSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQG  185 (658)
Q Consensus       107 G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g  185 (658)
                      +.||||.||..|+.++++.|++.++...+..+.           . |+||||+|+..|+.+++++|++++++ ...+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   69 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-----------R-GFTPLIWASAFGEIETVRFLLEWGADPHILAKER   69 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccC
Confidence            468999999999999999999998875566666           6 99999999999999999999999885 5778899


Q ss_pred             hhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCC
Q 006173          186 FVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSE  265 (658)
Q Consensus       186 ~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~  265 (658)
                      .||||+|+..|+.++++.|++++.+. +                                                    
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~----------------------------------------------------   96 (172)
T 3v30_A           70 ESALSLASTGGYTDIVGLLLERDVDI-N----------------------------------------------------   96 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCT-T----------------------------------------------------
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-C----------------------------------------------------
Confidence            99999999999999999998764321 1                                                    


Q ss_pred             CCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhh
Q 006173          266 NVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDIL  345 (658)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  345 (658)
                                                                                                      
T Consensus        97 --------------------------------------------------------------------------------   96 (172)
T 3v30_A           97 --------------------------------------------------------------------------------   96 (172)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCccccccccccc
Q 006173          346 NTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDE  425 (658)
Q Consensus       346 ~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~  425 (658)
                          .+|..|+||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..++.+++++|++.++    .+..++.
T Consensus        97 ----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~----~~~~~~~  166 (172)
T 3v30_A           97 ----IYDWNGGTPLLYAVRGNHVKCVEALLARG-AD-LTTEADSGYTPMDLAVALGYRKVQQVIENHIL----KLFQSNL  166 (172)
T ss_dssp             ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH----HHSCC--
T ss_pred             ----CCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH----HHhcccC
Confidence                13445889999999999999999999998 65 56678999999999999999999999999977    6678888


Q ss_pred             CCCch
Q 006173          426 KRINI  430 (658)
Q Consensus       426 ~G~Tp  430 (658)
                      .|.||
T Consensus       167 ~~~~p  171 (172)
T 3v30_A          167 VPADP  171 (172)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            88887

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.6e-25  Score=203.72  Aligned_cols=154  Identities=14%  Similarity=0.154  Sum_probs=135.8

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      +.+|||.|+..|+.+.++.++ +..+...+.. +..|+|||| . |..|+.+++++|++.+ .+ ++.. |..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~-~-~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLL-HRELVHPDAL-NRFGKTALQ-V-MMFGSTAIALELLKQG-AS-PNVQ-DTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH-HTTCCCTTCC-CTTSCCHHH-H-SCTTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHH-HhhCcCcccc-CCCCCcHHH-H-HHcCCHHHHHHHHHCC-CC-CCCc-CCCCCCHHHH
Confidence            468999999999999999999 5533345444 889999999 8 9999999999999994 33 7788 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHHHHH
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLI  193 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~  193 (658)
                      |+..|+.+++++|++.++++ +..+.           . |+||||+|+..|+.+++++|+++.....+|..|.||||+|+
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~  141 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADV-NVPDG-----------T-GALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL  141 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCS-CCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCC-CCcCC-----------C-CCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHH
Confidence            99999999999999998875 44555           6 99999999999999999999999334788999999999999


Q ss_pred             hcCcHHHHHHHHHh
Q 006173          194 DSNLFDMALALLKC  207 (658)
Q Consensus       194 ~~g~~~iv~~LL~~  207 (658)
                      ..|+.++++.|+++
T Consensus       142 ~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          142 QRGAQDLVDILQGH  155 (156)
T ss_dssp             HSCCHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHhh
Confidence            99999999999975

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=2.3e-25  Score=207.13  Aligned_cols=157  Identities=17%  Similarity=0.153  Sum_probs=138.8

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      .....++|+.||+.|+.+.++.|+ +. +..++.+ +.+|.|||| .|+..|+.++|++|++.+ .+ ++.. |..|.||
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll-~~-g~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~   83 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILM-AN-GADVNAE-DASGWTPLH-LAAFNGHLEIVEVLLKNG-AD-VNAV-DHAGMTP   83 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHH-HT-TCCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTSCCH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHH-HC-CCCCCCC-CCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-CCcc-CCCCCCH
Confidence            345779999999999999999999 44 4445544 889999999 999999999999999994 33 7788 9999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHH
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLL  189 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~L  189 (658)
                      ||+|+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ..+|..|.|||
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  150 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGADV-NANDM-----------E-GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF  150 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            99999999999999999998886 44455           6 99999999999999999999999986 67899999999


Q ss_pred             HHHHhcCcHHHHHHHHHh
Q 006173          190 KFLIDSNLFDMALALLKC  207 (658)
Q Consensus       190 h~A~~~g~~~iv~~LL~~  207 (658)
                      |+|+..|+.+++++|++.
T Consensus       151 ~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          151 DISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHhCCHHHHHHHHHc
Confidence            999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=8e-26  Score=209.68  Aligned_cols=158  Identities=12%  Similarity=0.117  Sum_probs=140.1

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      +.+|||.|+..|+.+.++.++ +. +..++.+ +.+|+|||| .|+..|+.++|++|++.+ .+ ++.. |..|.||||+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll-~~-~~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~   75 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRI-EQ-ENVINHT-DEEGFTPLM-WAAAHGQIAVVEFLLQNG-AD-PQLL-GKGRESALSL   75 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHH-HH-SSCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTCCCHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHH-Hc-CCCcCCC-CCCCCCHHH-HHHHCCCHHHHHHHHHcC-CC-CCCc-CCCCCcHHHH
Confidence            468999999999999999999 54 3445544 889999999 999999999999999994 33 7778 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHH
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A  192 (658)
                      |+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ..+|..|.||||+|
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  142 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDV-NEYDW-----------N-GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA  142 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CcCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            99999999999999998886 44455           6 99999999999999999999999986 67899999999999


Q ss_pred             HhcCcHHHHHHHHHhCCCc
Q 006173          193 IDSNLFDMALALLKCHPMI  211 (658)
Q Consensus       193 ~~~g~~~iv~~LL~~~~~~  211 (658)
                      +..|+.++++.|+++...+
T Consensus       143 ~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          143 VALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHTCHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHHH
Confidence            9999999999999886543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1.8e-25  Score=206.06  Aligned_cols=61  Identities=18%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      ..|+||||+|+..|+.+++++|++++ ++.++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       101 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          101 NEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            34677888888888888888888888 77667778888888888888888888888888776

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=1.5e-25  Score=212.93  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=134.6

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCCh
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSE  109 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~T  109 (658)
                      .+..+.||||.|+..|+.+.++.++ +. +..++.+ +..|+|||| .|+..|+.++|++|++.+ .+ ++.. |..|.|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll-~~-~~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t  103 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLV-EN-FDKLEDK-DIEGSTALI-WAVKNNRLGIAEKLLSKG-SN-VNTK-DFSGKT  103 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHH-HH-HCCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHHT-CC-TTCC-CTTSCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-Hh-ccccccc-cccCccHHH-HHHHcCCHHHHHHHHHCC-CC-CCCC-CCCCCc
Confidence            4556889999999999999999999 43 3444444 778999999 999999999999999984 33 7777 899999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhH
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVL  188 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~  188 (658)
                      |||+|+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ..+|..|.||
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  170 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANV-NDRNL-----------E-GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA  170 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-----------T-CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            999999999999999999988875 44444           5 99999999999999999999999885 5788999999


Q ss_pred             HHHHHhcCcHHHHHHHHHh
Q 006173          189 LKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       189 Lh~A~~~g~~~iv~~LL~~  207 (658)
                      ||+|+..|+.+++++|++.
T Consensus       171 l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          171 EASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHhc
Confidence            9999999999999999876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1.9e-25  Score=206.64  Aligned_cols=158  Identities=17%  Similarity=0.138  Sum_probs=137.9

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      +.++.+|||.|+..|+.+.++.++ +..+...+. .+..|.|||| .|+..|+.++|++|++.+ .+ ++.. |..|.||
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll-~~~~~~~~~-~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~   78 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLC-TVQSVNCRD-IEGRQSTPLH-FAAGYNRVSVVEYLLQHG-AD-VHAK-DKGGLVP   78 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHC-CTTTTTCCC-TTTTCCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTSCCH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHH-HcCCCCccc-cccCCCCHHH-HHHHcChHHHHHHHHhcC-CC-CCcc-CCCCCCH
Confidence            456789999999999999999999 555544443 3778899999 999999999999999994 33 7788 9999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHH
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLL  189 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~L  189 (658)
                      ||+|+..|+.+++++|++.++++ +..+.           . |+||||+|+..|+.+++++|++++++ ..+|..|.|||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  145 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKHGAVV-NVADL-----------W-KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL  145 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTG
T ss_pred             HHHHHHcCcHHHHHHHHhCCCCC-CCcCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChh
Confidence            99999999999999999998885 44455           6 99999999999999999999999985 67899999999


Q ss_pred             HHHHhcCcHHHHHHHHHhC
Q 006173          190 KFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       190 h~A~~~g~~~iv~~LL~~~  208 (658)
                      |+|+. |+.+++++|+++.
T Consensus       146 ~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          146 DLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             GGSCT-TCHHHHHHHHTC-
T ss_pred             HhHhc-CChHHHHHHhhcc
Confidence            99877 8899999998763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=5.3e-25  Score=201.03  Aligned_cols=150  Identities=13%  Similarity=0.065  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      ..++|+.|+..|+.+.++.++ +.... .+  .+..|.|||| .|+..|+.+++++|++.+ .+ ++.. |..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll-~~g~~-~~--~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~   73 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILM-ANGAP-FT--TDWLGTSPLH-LAAQYGHFSTTEVLLRAG-VS-RDAR-TKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH-HHTCC-CC--CCTTCCCHHH-HHHHHTCHHHHHHHHTTT-CC-TTCC-CTTCCCHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHH-HcCCC-CC--cCCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-CCCC-CCCCCCHHHH
Confidence            358999999999999999999 55443 22  3788999999 999999999999999984 33 7778 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHH
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A  192 (658)
                      |+..|+.+++++|++.++++ +..+.           . |+||||+|+..|+.+++++|++++++ ..+|..|.||||+|
T Consensus        74 A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  140 (153)
T 1awc_B           74 AASEGHANIVEVLLKHGADV-NAKDM-----------L-KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcChHHHHHHHHHcCCCC-CCCCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            99999999999999998875 44455           6 99999999999999999999999985 67899999999999


Q ss_pred             HhcCcHHHHHHH
Q 006173          193 IDSNLFDMALAL  204 (658)
Q Consensus       193 ~~~g~~~iv~~L  204 (658)
                      +..|+.+++++|
T Consensus       141 ~~~~~~~i~~~L  152 (153)
T 1awc_B          141 IDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=4.5e-25  Score=209.68  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=113.6

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      |.+|+|||| .||..|+.++|++|++.+ .+ ++.. |..|.||||+|+..|+.+++++|++.++++ +..+.       
T Consensus        32 d~~g~t~L~-~A~~~g~~~~v~~Ll~~~-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-------   99 (192)
T 2rfm_A           32 DSYNRTPLM-VACMLGMENAIDKLVENF-DK-LEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDF-------   99 (192)
T ss_dssp             CTTCCCHHH-HHHHHTCGGGHHHHHHHH-CC-TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-------
T ss_pred             CCCCCCHHH-HHHHcCCHHHHHHHHHhc-cc-cccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-------
Confidence            889999999 999999999999999984 33 7778 999999999999999999999999998875 44455       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCC
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHP  209 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~  209 (658)
                          . |.||||+|+..|+.+++++|++++++ ..+|..|.||||+|+..|+.++++.|++.+.
T Consensus       100 ----~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  158 (192)
T 2rfm_A          100 ----S-GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA  158 (192)
T ss_dssp             ----T-SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ----C-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence                6 99999999999999999999999985 6788999999999999999999999998743

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=4.6e-26  Score=229.70  Aligned_cols=181  Identities=9%  Similarity=0.069  Sum_probs=156.6

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcc-cccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPN-ALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYME  112 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~-~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh  112 (658)
                      ..+++|.|+..|+.+.++.++ +...+ .++.+ |.+|+|||| .||..|+.++|++|++.+. .+++.. |..|.||||
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~n~~-d~~g~T~Lh-~A~~~g~~~~v~~Ll~~g~-~~~~~~-~~~g~tpL~  150 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMS-ARLLDYVVNIA-DSNGNTALH-YSVSHANFPVVQQLLDSGV-CKVDKQ-NRAGYSPIM  150 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHC-HHHHHHHHTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTSC-CCTTCC-CTTSCCHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHH-HHHHhhcCcCC-CCCCCCHHH-HHHHCCCHHHHHHHHHCCC-CcCCCC-CCCCCCHHH
Confidence            446678899999999999988 43222 23333 889999999 9999999999999999953 348888 999999999


Q ss_pred             HHH-----hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcch
Q 006173          113 YAV-----STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGF  186 (658)
Q Consensus       113 ~Aa-----~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~  186 (658)
                      +|+     ..|+.+++++|++.+... ...+.           . |+||||+|+..|+.++|++|++++++ +.+|..|.
T Consensus       151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~  217 (276)
T 4hbd_A          151 LTALATLKTQDDIETVLQLFRLGNIN-AKASQ-----------A-GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS  217 (276)
T ss_dssp             HGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             HHHHHHhhhhhhHHHHHHHHHcCCCc-cccCC-----------C-CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            999     779999999999999664 44444           5 99999999999999999999999996 67899999


Q ss_pred             hHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCC
Q 006173          187 VLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKA  232 (658)
Q Consensus       187 t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~  232 (658)
                      ||||+|+..|+.++++.|++..+...+.+|.+|.||||+|+..++.
T Consensus       218 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          218 TALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999966667788999999999999999643

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=6.4e-25  Score=203.57  Aligned_cols=122  Identities=14%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      .|+|||| .|+..|+.++|+.|++.+ .+ ++.. |..|.||||+|+..|+.+++++|++.++++ +..+.         
T Consensus         2 ~~~t~L~-~A~~~g~~~~v~~ll~~~-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~---------   67 (167)
T 3v31_A            2 ANSLSVH-QLAAQGEMLYLATRIEQE-NV-INHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGK---------   67 (167)
T ss_dssp             TTCCCHH-HHHHTTCHHHHHHHHHHS-SC-TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT---------
T ss_pred             CCcchHH-HHHHCCCHHHHHHHHHcC-CC-cCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCC---------
Confidence            4677777 777777777777777773 22 6666 777777777777777777777777776664 33333         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                        . |.||||+|+..|+.+++++|++++++ +..|..|.||||+|+..|+.++++.|+++
T Consensus        68 --~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  124 (167)
T 3v31_A           68 --G-RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES  124 (167)
T ss_dssp             --T-CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             --C-CCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence              4 77777777777777777777776653 44555666666666666666666666654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=5.3e-25  Score=206.73  Aligned_cols=159  Identities=13%  Similarity=0.111  Sum_probs=141.5

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      ..++||.||..|+.+.++.++ +..+..++.+ +..|+|||| .||..|+.++|++|++.+ .+ ++.. |..|.||||+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~   78 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWL-DNTENDLNQG-DDHGFSPLH-WACREGRSAVVEMLIMRG-AR-INVM-NRGDDTPLHL   78 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHH-HCTTSCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTCCCHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH-hcCccccccc-CCCCCCHHH-HHHHcCcHHHHHHHHHcC-CC-CCCc-CCCCCCHHHH
Confidence            567899999999999999999 6656656544 889999999 999999999999999994 33 7788 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHH
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A  192 (658)
                      |+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ..+|..|.||||+|
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~-~~~d~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKADI-NAVNE-----------H-GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA  145 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence            99999999999999998886 44455           6 99999999999999999999999996 67899999999999


Q ss_pred             HhcCcHHHHHHHHHhCCCc
Q 006173          193 IDSNLFDMALALLKCHPMI  211 (658)
Q Consensus       193 ~~~g~~~iv~~LL~~~~~~  211 (658)
                      +..++.++++.|++.+.+.
T Consensus       146 ~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          146 KAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             CHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHhhcCc
Confidence            9999999999999987655

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=2.3e-24  Score=200.33  Aligned_cols=59  Identities=20%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCC
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFP  413 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  413 (658)
                      ..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..++.+++++|++.|
T Consensus       111 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          111 MEGHTPLHLAAMFGHLEIVEVLLKNG-AD-VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-CC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            34667777777777777777777777 54 4556777778888887777777777777654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=1.2e-24  Score=201.25  Aligned_cols=92  Identities=18%  Similarity=0.200  Sum_probs=58.1

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      |.+|.||||.|+..|+.++++.|++.++......+.           . |.||||+|+..|+.+++++|++++++ +..|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   72 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-----------R-QSTPLHFAAGYNRVSVVEYLLQHGADVHAKD   72 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-----------C-CCCHHHHHHHcChHHHHHHHHhcCCCCCccC
Confidence            556666677777667777776666654433333333           4 66677777766666677766666663 4556


Q ss_pred             CcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          183 RQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       183 ~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                      ..|.||||+|+..|+.+++++|++.
T Consensus        73 ~~g~t~L~~A~~~~~~~~v~~Ll~~   97 (165)
T 3twr_A           73 KGGLVPLHNACSYGHYEVAELLVKH   97 (165)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhC
Confidence            6666666666666666666666665

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=2.1e-24  Score=202.61  Aligned_cols=69  Identities=16%  Similarity=0.040  Sum_probs=48.1

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCC
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKR  427 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G  427 (658)
                      ..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..++.+++++|++.|+    .++..+.++
T Consensus       103 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~----~~~~~~~~~  171 (179)
T 3f6q_A          103 EHGNVPLHYACFWGQDQVAEDLVANG-AL-VSICNKYGEMPVDKAKAPLRELLRERAEKMGQ----NLNRIPYKD  171 (179)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTT-CC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC----CCSCBCCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCC-CC-cchhccCCCCcHHHHHHHHHHHHHHHHHHhhc----CcccCCccc
Confidence            34667777777777777777777777 54 45567777777777777777777777777776    445544443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=3.1e-26  Score=224.05  Aligned_cols=181  Identities=9%  Similarity=-0.023  Sum_probs=152.5

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS  108 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~  108 (658)
                      ..+..+.+|||.||..|+.+.++.|+ +. +..++.+ +.+|+|||| .||..|+.++|++|++.+ .+ ++.+ |..|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~-g~~~~~~-d~~g~tpLh-~A~~~g~~~~v~~Ll~~g-a~-~n~~-d~~g~   88 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAV-KE-MNDPSQP-NEEGITALH-NAICGANYSIVDFLITAG-AN-VNSP-DSHGW   88 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHH-HH-SSCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTCC
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHH-hc-CCCCCCC-CCCCCCHHH-HHHHcCCHHHHHHHHHCC-CC-CCCC-CCCCC
Confidence            34567889999999999999999999 54 3345544 889999999 999999999999999994 34 7888 99999


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHH--HHhCcHHHHHHhccCCCC-CCCCCcc
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMA--AKAGKRDAVRHLLPKTRE-PLDGRQG  185 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~A--a~~g~~~iv~~Ll~~~~~-~~~~~~g  185 (658)
                      ||||+||..|+.+++++|++.++++....+.           . |+||||+|  +..|+.+++++|++++++ +..|..|
T Consensus        89 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-----------~-g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~  156 (229)
T 2vge_A           89 TPLHCAASCNDTVICMALVQHGAAIFATTLS-----------D-GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGA  156 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTTCCCSS-----------T-TCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGE
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcccccCC-----------C-CCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCc
Confidence            9999999999999999999999987555555           5 99999999  999999999999999984 6788899


Q ss_pred             hhHHHHHHhcCcHHHHHHHHHhCCCc-cccccCCCCcHhHHHhcCCC
Q 006173          186 FVLLKFLIDSNLFDMALALLKCHPMI-ARADIGETGKILESLSKRPK  231 (658)
Q Consensus       186 ~t~Lh~A~~~g~~~iv~~LL~~~~~~-~~~~d~~g~TpLh~Aa~~~~  231 (658)
                      .|++|.++..+..   +.|++.+.+. .+.+|.+|.||||+|++.++
T Consensus       157 ~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          157 VYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             EEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             hHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCC
Confidence            9999966655433   4555654442 56789999999999999964

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=4e-25  Score=217.86  Aligned_cols=184  Identities=11%  Similarity=0.021  Sum_probs=111.9

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      +..|.||||.|++.|+.++++.|+++|+++. .. .           . |.||||+|+..|+.++|++|++.+++ +..|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~-~~-~-----------~-~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d   67 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FN-P-----------L-PLALLLDSSLEGEFDLVQRIIYEVDDPSLPN   67 (239)
T ss_dssp             -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc-cC-c-----------h-hhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            4457778888887777788887777777652 22 2           3 77888888888888888888877764 5667


Q ss_pred             CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCC
Q 006173          183 RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHP  262 (658)
Q Consensus       183 ~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~  262 (658)
                      ..|.||||+|+..|+.+++++|++.+.+. +.                                                
T Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~------------------------------------------------   98 (239)
T 1ycs_B           68 DEGITALHNAVCAGHTEIVKFLVQFGVNV-NA------------------------------------------------   98 (239)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TC------------------------------------------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cc------------------------------------------------
Confidence            77788888888888888888887763322 11                                                


Q ss_pred             CCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhh
Q 006173          263 PSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAV  342 (658)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  342 (658)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (239)
T 1ycs_B           99 --------------------------------------------------------------------------------   98 (239)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCC-hHHHHH--HHhCCHhHHHHHhcCCCcccc-
Q 006173          343 DILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGY-DIFKVA--VEHRREKVFNIIFNFPNIYPF-  418 (658)
Q Consensus       343 ~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~-T~Lh~A--~~~~~~~iv~~Ll~~~~~~~~-  418 (658)
                              +|..|+||||+|+..|+.+++++|++++ ++. +.+|..|. ||||+|  +..|+.+++++|++.+++... 
T Consensus        99 --------~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B           99 --------ADSDGWTPLHCAASCNNVQVCKFLVESG-AAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             --------CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTT
T ss_pred             --------cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccccc
Confidence                    3445788888899999999999999998 764 44565555 999999  788999999999998762210 


Q ss_pred             ----cccccccCCCchhhhHhhcCCC
Q 006173          419 ----FMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       419 ----~in~~D~~G~TpLHlAa~~g~~  440 (658)
                          .....|..|.||+|+|.+.|..
T Consensus       169 ~~~~~~al~d~~~~~~~eLa~~~G~~  194 (239)
T 1ycs_B          169 NKGVIYALWDYEPQNDDELPMKEGDC  194 (239)
T ss_dssp             GGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred             ccceEEEEeccCCCCCCcccccCCCE
Confidence                1223388899999999999873

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=7.3e-24  Score=193.43  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=36.2

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHH
Q 006173          354 VFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNII  409 (658)
Q Consensus       354 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  409 (658)
                      .|+||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+.+|+.+++++|
T Consensus        99 ~g~t~L~~A~~~~~~~~v~~Ll~~g-a~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           99 LKMTALHWATEHNHQEVVELLIKYG-AD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            4566666666667777777777766 44 344566777777777777777777665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=7e-25  Score=216.13  Aligned_cols=181  Identities=13%  Similarity=0.044  Sum_probs=124.7

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCCh
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSE  109 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~T  109 (658)
                      |+..+.||||.|++.|+.+.++.++  .++..++  .++.|.|||| .|+..|+.++|+.|++.+.  +++.. |..|.|
T Consensus         1 p~~~g~t~L~~a~~~~~~~~~~~ll--~~g~~~~--~~~~~~t~L~-~A~~~g~~~~v~~Ll~~g~--~~~~~-d~~g~t   72 (239)
T 1ycs_B            1 PEITGQVSLPPGKRTNLRKTGSERI--AHGMRVK--FNPLPLALLL-DSSLEGEFDLVQRIIYEVD--DPSLP-NDEGIT   72 (239)
T ss_dssp             ----------------------------------------CHHHHH-HHHHHTCHHHHHHHTSTTS--SCCCC-CTTSCC
T ss_pred             CCccccccCchhhhhhhHHHHHHHh--ccCCCcc--cCchhhHHHH-HHHHcCCHHHHHHHHHcCC--CCCCc-CCCCCC
Confidence            3567899999999999999999999  4444443  3578899999 9999999999999999943  48888 999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcch-h
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGF-V  187 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~-t  187 (658)
                      |||+||..|+.+++++|++.++++ +..+.           . |+||||+|+..|+.+++++|++++++ ...+..|. |
T Consensus        73 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~-----------~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t  139 (239)
T 1ycs_B           73 ALHNAVCAGHTEIVKFLVQFGVNV-NAADS-----------D-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT  139 (239)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCT-TCCCT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence            999999999999999999999886 55555           6 99999999999999999999999995 56666666 9


Q ss_pred             HHHHH--HhcCcHHHHHHHHHhCCCcc--------ccccCCCCcHhHHHhcCCC
Q 006173          188 LLKFL--IDSNLFDMALALLKCHPMIA--------RADIGETGKILESLSKRPK  231 (658)
Q Consensus       188 ~Lh~A--~~~g~~~iv~~LL~~~~~~~--------~~~d~~g~TpLh~Aa~~~~  231 (658)
                      |||+|  +..|+.+++++|++...+..        ...+..+.+|++++.+.|.
T Consensus       140 ~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          140 AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            99999  88899999999998754321        1226678888888887763

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=9.9e-24  Score=193.10  Aligned_cols=143  Identities=14%  Similarity=0.077  Sum_probs=129.6

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCccc
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDE  149 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~  149 (658)
                      |.|||| .|+..|+.++++.|++. ....++.. |..|.||||+ |..|+.+++++|++.++++ +..+.          
T Consensus         2 ~~~~L~-~A~~~g~~~~v~~ll~~-~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~----------   66 (156)
T 1bd8_A            2 AGDRLS-GAAARGDVQEVRRLLHR-ELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDT----------   66 (156)
T ss_dssp             HHHHHH-HHHHHTCHHHHHHHHHT-TCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCT----------
T ss_pred             cchHHH-HHHHhCCHHHHHHHHHh-hCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCC----------
Confidence            579999 99999999999999998 44458888 9999999999 9999999999999998885 44555          


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhc
Q 006173          150 EKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSK  228 (658)
Q Consensus       150 ~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~  228 (658)
                       . |.||||+|+..|+.+++++|++++++ ..+|..|.||||+|+..|+.++++.|++.  ...+.+|.+|.||||+|++
T Consensus        67 -~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~  142 (156)
T 1bd8_A           67 -S-GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQ  142 (156)
T ss_dssp             -T-SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHH
T ss_pred             -C-CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHH
Confidence             6 99999999999999999999999985 67889999999999999999999999998  5567889999999999999


Q ss_pred             CCC
Q 006173          229 RPK  231 (658)
Q Consensus       229 ~~~  231 (658)
                      .++
T Consensus       143 ~~~  145 (156)
T 1bd8_A          143 RGA  145 (156)
T ss_dssp             SCC
T ss_pred             cCc
Confidence            864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=4.5e-24  Score=201.19  Aligned_cols=155  Identities=8%  Similarity=0.044  Sum_probs=133.4

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCCh----HHHHHHHhcCCccccccccCCCC
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPA----TLVDKLLSKVPRNCLQNFARDEG  107 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~----~iv~~Ll~~~~~~~l~~~~d~~G  107 (658)
                      ..+|++|+.||+.|+.+.++.++ +....   .+.+..|+|||| .|+..|+.    ++|++|++.| .+ ++.+ |.+|
T Consensus         4 ~~~~~~l~~Aa~~g~~~~~~~l~-~~~~~---~~~~~~g~T~Lh-~A~~~~~~~~~~~iv~~Ll~~G-ad-vn~~-d~~g   75 (186)
T 3t8k_A            4 MSEYRTVSAAAMLGTYEDFLELF-EKGYE---DKESVLKSNILY-DVLRNNNDEARYKISMFLINKG-AD-IKSR-TKEG   75 (186)
T ss_dssp             HHHCSSHHHHHHHSCHHHHHHHH-HHSSS---CHHHHHTTTHHH-HHTTCSCHHHHHHHHHHHHHTT-CC-SSCC-CTTC
T ss_pred             cccccHHHHHHHcCCHHHHHHHH-hcCcc---cccccCCCCHHH-HHHHcCCcchHHHHHHHHHHCC-CC-CCCC-CCCC
Confidence            45789999999999999999999 55433   232467999999 99999985    5999999994 44 8888 9999


Q ss_pred             ChHHHHHHhcCC------HHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCC-cHHHHHHHhC-----cHHHHHHhcc-
Q 006173          108 SEYMEYAVSTGK------LNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDL-LPVHMAAKAG-----KRDAVRHLLP-  174 (658)
Q Consensus       108 ~TpLh~Aa~~G~------~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~-TpLh~Aa~~g-----~~~iv~~Ll~-  174 (658)
                      +||||+|+..|+      .+++++|+++|+++ +.++.           . |. ||||+|+..|     +.+++++|++ 
T Consensus        76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~-----------~-g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~  142 (186)
T 3t8k_A           76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYK-----------P-YKIVVFKNIFNYFVDENEMIPLYKLIFSQ  142 (186)
T ss_dssp             CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBG-----------G-GTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCC-----------C-cCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence            999999999997      68999999999986 45555           6 99 9999999944     4679999999 


Q ss_pred             CCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          175 KTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       175 ~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                      ++++ +.+|..|.||||+|+..|+.++++.|++.
T Consensus       143 ~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          143 SGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            8885 78999999999999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=2.1e-22  Score=179.80  Aligned_cols=125  Identities=16%  Similarity=0.058  Sum_probs=97.5

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +..|.|||| .|+..|+.++|++|++.+ .+ ++.+ |..|.||||+|+. |+.+++++|++.++++......       
T Consensus         9 ~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~-------   76 (136)
T 1d9s_A            9 GGSSDAGLA-TAAARGQVETVRQLLEAG-AD-PNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA-------   76 (136)
T ss_dssp             CCCCSCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTT-------
T ss_pred             CCCCccHHH-HHHHcCCHHHHHHHHHcC-CC-cCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCC-------
Confidence            677888888 888888888888888873 33 6677 8888888888888 8888888888877765322222       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhC
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~  208 (658)
                          . |+||||+|+..|+.+++++|++++++ ..+|..|.||||+|+..++.+++++|++++
T Consensus        77 ----~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           77 ----T-LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             ----T-TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                3 78888888888888888888888875 567788888888888888888888888764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=1.1e-22  Score=186.18  Aligned_cols=137  Identities=14%  Similarity=0.044  Sum_probs=69.5

Q ss_pred             hhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCCh-HH
Q 006173           33 DSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSE-YM  111 (658)
Q Consensus        33 ~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~T-pL  111 (658)
                      .+.+|||.|+..|+.+.++.|+ +. +..++.+ +..|+|||| +|+ .|+.++|++|++.+ .+ ++.+ |..|.| ||
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll-~~-g~~~~~~-~~~g~t~L~-~A~-~~~~~~v~~Ll~~g-~~-~~~~-d~~g~ttpL   82 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALL-EA-GANPNAP-NSYGRRPIQ-VMM-MGSARVAELLLLHG-AE-PNCA-DPATLTRPV   82 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHH-TT-TCCTTCC-CSSSCCTTT-SSC-TTCHHHHHHHHTTT-CC-CCCC-CTTTCCCHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHH-Hc-CCCCCCC-CCCCCCHHH-HHH-cCCHHHHHHHHHcC-CC-CCCc-CCCCCcHHH
Confidence            3556666666666666666666 22 3333333 555666666 553 56666666666652 22 4555 556665 66


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHH
Q 006173          112 EYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLK  190 (658)
Q Consensus       112 h~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh  190 (658)
                      |+|+..|+.+++++|++.++++ +.++.           . |+||||+|+..|+.+++++|++++++ ..++..|.|+.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~-----------~-g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARL-DVRDA-----------W-GRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-SCCCT-----------T-CCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC-cccCC-----------C-CCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            6666666666666666655553 33333           4 66666666666666666666666553 344555555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=7.6e-22  Score=176.11  Aligned_cols=131  Identities=11%  Similarity=0.077  Sum_probs=110.4

Q ss_pred             hhhhhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCC
Q 006173           26 EKIIKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARD  105 (658)
Q Consensus        26 ~~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~  105 (658)
                      +...+...+.+|||.||..|+.+.++.|+ +. +..++.+ +.+|+|||| .|+..|+.+++++|++.+ .+ ++.. |.
T Consensus         6 ~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll-~~-g~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-d~   78 (136)
T 2jab_A            6 HHHHHGSDLGKKLLEAARAGQDDEVRILM-AN-GADVNAK-DEYGLTPLY-LATAHGHLEIVEVLLKNG-AD-VNAV-DA   78 (136)
T ss_dssp             ------CHHHHHHHHHHHHTCHHHHHHHH-HT-TCCTTCC-CTTSCCHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CT
T ss_pred             CCCcccccccHHHHHHHHhCCHHHHHHHH-Hc-CCCCCCc-CCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-CCcC-CC
Confidence            33455567899999999999999999999 44 4445544 889999999 999999999999999994 33 7788 99


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCC
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKT  176 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~  176 (658)
                      .|.||||+|+..|+.+++++|++.++++ +..+.           . |+||||+|+..|+.+++++|+++|
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-----------~-g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDK-----------F-GKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-cCcCC-----------C-CCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999998885 44555           6 999999999999999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=5.1e-22  Score=181.80  Aligned_cols=143  Identities=18%  Similarity=0.083  Sum_probs=112.6

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +..|.|||| .|+..|+.++|++|++.+ .+ ++.. |..|+||||+|+ .|+.+++++|++.++++ +..+.       
T Consensus         9 ~~~~~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~-------   75 (156)
T 1bi7_B            9 MEPSADWLA-TAAARGRVEEVRALLEAG-AN-PNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP-------   75 (156)
T ss_dssp             -CCSTTHHH-HHHHHTCHHHHHHHHTTT-CC-TTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT-------
T ss_pred             CccchHHHH-HHHHcCCHHHHHHHHHcC-CC-CCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC-------
Confidence            678999999 999999999999999984 33 7888 999999999985 99999999999999886 55555       


Q ss_pred             cccCCCCCc-HHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhH
Q 006173          147 KDEEKDDLL-PVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILE  224 (658)
Q Consensus       147 ~~~~~~G~T-pLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh  224 (658)
                          . |.| |||+|+..|+.+++++|++++++ ..+|..|.||||+|+..|+.+++++|++++. ..+.+|..|.||.+
T Consensus        76 ----~-g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           76 ----A-TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-GTRGSNHARIDAAE  149 (156)
T ss_dssp             ----T-TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             ----C-CCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC-CCCccCcCcCcccc
Confidence                5 999 99999999999999999999985 6789999999999999999999999998854 45788899999988


Q ss_pred             HHhc
Q 006173          225 SLSK  228 (658)
Q Consensus       225 ~Aa~  228 (658)
                      -+..
T Consensus       150 ~~~~  153 (156)
T 1bi7_B          150 GPSD  153 (156)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            5543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=7.3e-23  Score=202.23  Aligned_cols=144  Identities=12%  Similarity=0.024  Sum_probs=119.8

Q ss_pred             ccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 006173           64 CIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDD  143 (658)
Q Consensus        64 ~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d  143 (658)
                      .+....+.+++. +++..|+.+.+..+... ..    .. +.+|.||||+||..|+.++++.|++ +.++ +..+.    
T Consensus         9 ~~~~~~~~~~~l-~~~~~g~~~~~~~~~~~-~~----~~-~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~----   75 (244)
T 3ui2_A            9 SRTAGEGAMEYL-IEWKDGHSPSWVPSSYI-AA----DV-VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE----   75 (244)
T ss_dssp             EEEETTTEEEEE-EEESSCCCCEEEEGGGS-CH----HH-HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCT----
T ss_pred             hhhcCCCccHHH-HHHHcCCCccccccccc-cc----cc-ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCC----
Confidence            344567789999 99999998887766554 22    22 6689999999999999999999998 6664 44555    


Q ss_pred             CCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC-CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCc
Q 006173          144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG-RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGK  221 (658)
Q Consensus       144 ~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~-~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~T  221 (658)
                             . |+||||+||..|+.++|++|++++++ +..+ ..|.||||+|+..|+.++++.|++++. ..+.+|..|.|
T Consensus        76 -------~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t  146 (244)
T 3ui2_A           76 -------N-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLT  146 (244)
T ss_dssp             -------T-SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCC
T ss_pred             -------C-CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCc
Confidence                   6 99999999999999999999999996 3555 889999999999999999999999854 45778999999


Q ss_pred             HhHHHhcC
Q 006173          222 ILESLSKR  229 (658)
Q Consensus       222 pLh~Aa~~  229 (658)
                      |||+|++.
T Consensus       147 ~l~~A~~~  154 (244)
T 3ui2_A          147 ALELAREI  154 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.86  E-value=4.4e-22  Score=177.70  Aligned_cols=128  Identities=16%  Similarity=0.074  Sum_probs=112.0

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCC-C
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDE-G  107 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~-G  107 (658)
                      ..+..+.+|||.|+..|+.+.++.|+ +. +..++.+ +..|+|||| .|+. |+.++|++|++.+ .+ ++.+ |.. |
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~-g~~~~~~-~~~g~t~L~-~A~~-~~~~~v~~Ll~~g-~~-~~~~-~~~~g   78 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLL-EA-GADPNAL-NRFGRRPIQ-VMMM-GSAQVAELLLLHG-AE-PNCA-DPATL   78 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHH-HT-TCCTTCC-CTTCCTTTT-TSTT-SCHHHHHHHHHHT-CC-SSCC-BTTTT
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHH-Hc-CCCcCCc-CCCCCCHHH-HHHc-CCHHHHHHHHHCC-CC-CCCc-CCCCC
Confidence            34556889999999999999999999 44 4445544 889999999 9999 9999999999994 34 7788 888 9


Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          108 SEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       108 ~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      .||||+|+..|+.+++++|++.++++ +..+.           . |+||||+|+..|+.+++++|+++|+
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~-----------~-g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARL-DVCDA-----------W-GRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSS-----------S-SSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999885 45555           6 9999999999999999999999876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=1.3e-22  Score=191.12  Aligned_cols=137  Identities=13%  Similarity=0.076  Sum_probs=109.3

Q ss_pred             hhhcCCChHHHHHHHhcCCcc---------ccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCc
Q 006173           77 VGIPDVPATLVDKLLSKVPRN---------CLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIK  147 (658)
Q Consensus        77 ~Aa~~g~~~iv~~Ll~~~~~~---------~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~  147 (658)
                      +|++.|..+.+++|++.....         ..... |.+|.||||+||..|+.++++.|++ +.++ +..+.        
T Consensus         6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~--------   74 (183)
T 3deo_A            6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE--------   74 (183)
T ss_dssp             EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHH-HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCT--------
T ss_pred             HHHHhcCCchhHHHHHHhCCCCccccchhcccccC-CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCC--------
Confidence            566677777777777542111         11223 5689999999999999999999998 6654 44455        


Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC-CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHH
Q 006173          148 DEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG-RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILES  225 (658)
Q Consensus       148 ~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~-~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~  225 (658)
                         . |+||||+|+..|+.+++++|++++++ +..+ ..|.||||+|+..|+.++++.|++++. ..+.+|.+|.||||+
T Consensus        75 ---~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~~  149 (183)
T 3deo_A           75 ---N-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALEL  149 (183)
T ss_dssp             ---T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTSCCHHHH
T ss_pred             ---C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCC-CCcCCCCCCCCHHHH
Confidence               6 99999999999999999999999985 3555 889999999999999999999999854 457889999999998


Q ss_pred             HhcC
Q 006173          226 LSKR  229 (658)
Q Consensus       226 Aa~~  229 (658)
                      |++.
T Consensus       150 A~~~  153 (183)
T 3deo_A          150 AREI  153 (183)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=9.7e-22  Score=175.43  Aligned_cols=124  Identities=17%  Similarity=0.164  Sum_probs=112.3

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      ...|.|||| .||..|+.++|++|++.+ .+ ++.. |..|.||||+||..|+.+++++|++.++++ +..+.       
T Consensus        11 ~~~~~t~l~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~-------   78 (136)
T 2jab_A           11 GSDLGKKLL-EAARAGQDDEVRILMANG-AD-VNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDA-------   78 (136)
T ss_dssp             -CHHHHHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-------
T ss_pred             cccccHHHH-HHHHhCCHHHHHHHHHcC-CC-CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC-------
Confidence            456899999 999999999999999994 34 7888 999999999999999999999999998875 44455       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                          . |.||||+|+..|+.+++++|++++++ ...|..|.||||+|+..|+.++++.|++.
T Consensus        79 ----~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           79 ----I-GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             ----T-CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             ----C-CCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence                6 99999999999999999999999985 67899999999999999999999999975

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.85  E-value=3.4e-21  Score=168.89  Aligned_cols=124  Identities=18%  Similarity=0.270  Sum_probs=99.6

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      +|+|||| .|+..|+.+++++|++.+ .+ ++.. |..|.||||+|+..|+.+++++|++.++++ +..+.         
T Consensus         1 ~g~t~L~-~A~~~~~~~~v~~Ll~~~-~~-~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~---------   66 (126)
T 1n0r_A            1 NGRTPLH-LAARNGHLEVVKLLLEAG-AD-VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK---------   66 (126)
T ss_dssp             CCCCHHH-HHHHHTCHHHHHHHHHHT-CC-TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT---------
T ss_pred             CCccHHH-HHHHcCcHHHHHHHHHcC-CC-CCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCC---------
Confidence            4788888 888888888888888873 33 6667 888888888888888888888888887764 34444         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCC
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHP  209 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~  209 (658)
                        . |.||||+|+..|+.+++++|++++++ ..+|..|.||||+|+..|+.+++++|++++.
T Consensus        67 --~-g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           67 --N-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             --T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             --C-CCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence              5 88888888888888888888888875 5677888888888888888888888887753

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=1.4e-21  Score=184.14  Aligned_cols=144  Identities=8%  Similarity=-0.045  Sum_probs=123.0

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCccccccccC-CCCChHHHHHHhcCCH----HHHHHHHhcCCCCCcccccCCCCC
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFAR-DEGSEYMEYAVSTGKL----NLITTLMGYNEELPNIKVEKKDDP  144 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d-~~G~TpLh~Aa~~G~~----~iv~~Ll~~~~~l~~~~~~~~~d~  144 (658)
                      +.++|| .|++.|+.+.++.+++.+    .+.. + ..|+||||+|+..|+.    +++++|+++|+++ +.++.     
T Consensus         6 ~~~~l~-~Aa~~g~~~~~~~l~~~~----~~~~-~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-----   73 (186)
T 3t8k_A            6 EYRTVS-AAAMLGTYEDFLELFEKG----YEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTK-----   73 (186)
T ss_dssp             HCSSHH-HHHHHSCHHHHHHHHHHS----SSCH-HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCT-----
T ss_pred             cccHHH-HHHHcCCHHHHHHHHhcC----cccc-cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCC-----
Confidence            468999 999999999999999873    2334 4 7899999999999985    5999999999986 44555     


Q ss_pred             CCcccCCCCCcHHHHHHHhCc------HHHHHHhccCCCC-CCCCCcch-hHHHHHHhcC-----cHHHHHHHHHhCCCc
Q 006173          145 NIKDEEKDDLLPVHMAAKAGK------RDAVRHLLPKTRE-PLDGRQGF-VLLKFLIDSN-----LFDMALALLKCHPMI  211 (658)
Q Consensus       145 ~~~~~~~~G~TpLh~Aa~~g~------~~iv~~Ll~~~~~-~~~~~~g~-t~Lh~A~~~g-----~~~iv~~LL~~~~~~  211 (658)
                            . |+||||+|+..|+      .+++++|+++|++ +.+|..|. ||||+|+..+     +.+++++|++..+..
T Consensus        74 ------~-g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad  146 (186)
T 3t8k_A           74 ------E-GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ  146 (186)
T ss_dssp             ------T-CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred             ------C-CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence                  6 9999999999997      5789999999996 78999999 9999999944     457999999944566


Q ss_pred             cccccCCCCcHhHHHhcCCCC
Q 006173          212 ARADIGETGKILESLSKRPKA  232 (658)
Q Consensus       212 ~~~~d~~g~TpLh~Aa~~~~~  232 (658)
                      ++.+|.+|.||||+|++.+..
T Consensus       147 ~~~~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A          147 LLIKDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             TTCCCTTSCCHHHHHHTTTCH
T ss_pred             CcccCCCCCCHHHHHHHcCCH
Confidence            799999999999999998643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=1.5e-20  Score=176.94  Aligned_cols=140  Identities=11%  Similarity=0.026  Sum_probs=121.1

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccC-CCCCh
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFAR-DEGSE  109 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d-~~G~T  109 (658)
                      +.++.+|||.|+..|+.+.++.++ +  +..++.+ +.+|+|||| .|+..|+.++|++|++++ .+ ++.+ | ..|+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll-~--~~~~~~~-d~~g~t~L~-~A~~~~~~~~v~~Ll~~g-a~-~~~~-~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLL-E--DRDVDAV-DENGRTALL-FVAGLGSDKCVRLLAEAG-AD-LDHR-DMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHT-T--TSCTTCC-CTTSCCHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH-h--cCCCCCc-CCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-CCcC-CCCCCCC
Confidence            457889999999999999999999 5  4455544 889999999 999999999999999994 34 6666 6 89999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHH
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLL  189 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~L  189 (658)
                      |||+|+..|+.+++++|++.++++ +.++.           . |+||||+|++.++.                ..+.++|
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~-----------~-g~tpl~~A~~~~~~----------------~~~~~~l  163 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADI-EVEDE-----------R-GLTALELAREILKT----------------TPKGNPM  163 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-----------T-SCCHHHHHHHHHHT----------------CCCCSHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCC-cCCCC-----------C-CCCHHHHHHHhccC----------------cccccHH
Confidence            999999999999999999999886 45555           6 99999999987654                3468999


Q ss_pred             HHHHhcCcHHHHHHHHHh
Q 006173          190 KFLIDSNLFDMALALLKC  207 (658)
Q Consensus       190 h~A~~~g~~~iv~~LL~~  207 (658)
                      ++|+..|+.++++.|.++
T Consensus       164 ~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          164 QFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCHHHHHHHHHHh
Confidence            999999999999998765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.6e-20  Score=164.60  Aligned_cols=124  Identities=15%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHH
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEY  113 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~  113 (658)
                      +.+|||.|+..|+.+.++.++ +. +..++.. +..|.|||| .|+..|+.+++++|++.+ .+ ++.+ |..|.||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll-~~-~~~~~~~-~~~g~t~L~-~A~~~~~~~~~~~Ll~~g-~~-~~~~-~~~g~t~l~~   74 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLL-EA-GADVNAK-DKNGRTPLH-LAARNGHLEVVKLLLEAG-AD-VNAK-DKNGRTPLHL   74 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHH-HH-TCCTTCC-CTTSCCHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHH-Hc-CCCCCCc-CCCCCcHHH-HHHHcCcHHHHHHHHHcC-CC-Cccc-CCCCCcHHHH
Confidence            568999999999999999999 54 3334433 788999999 999999999999999984 33 7778 9999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          114 AVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       114 Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      |+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|+++|+
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~-~~~~~-----------~-g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADV-NAKDK-----------N-GRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHcChHHHHHHHHHcCCCC-cccCC-----------C-CCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999999999999998885 44555           6 9999999999999999999999886

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=3.6e-21  Score=171.89  Aligned_cols=125  Identities=18%  Similarity=0.148  Sum_probs=102.8

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCC
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPN  145 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~  145 (658)
                      .+.+|+|||| .|+..|+.+++++|++.+ .+ ++.+ |..|.||||+|+..|+.+++++|++.++++ +..+.      
T Consensus         6 ~~~~g~t~L~-~A~~~~~~~~~~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~------   74 (137)
T 3c5r_A            6 TNHRGETLLH-IASIKGDIPSVEYLLQNG-SD-PNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGY------   74 (137)
T ss_dssp             CCTTCCCHHH-HHHHHTCHHHHHHHHHTT-CC-SCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCG------
T ss_pred             cCCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-CCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCC------
Confidence            3778899999 999999999999999884 33 6777 889999999999999999999999888775 44444      


Q ss_pred             CcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHh
Q 006173          146 IKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKC  207 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~  207 (658)
                           . |.||||+|+..|+.+++++|++++++ ..+|..|.||||+|+..+..+++++|.+.
T Consensus        75 -----~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           75 -----Q-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             -----G-GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             -----C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence                 5 89999999999999999999999885 67888999999999988888877666554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=2e-20  Score=184.76  Aligned_cols=141  Identities=11%  Similarity=0.019  Sum_probs=121.7

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccC-CCCCh
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFAR-DEGSE  109 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d-~~G~T  109 (658)
                      +..+.||||.||..|+.+.++.++ +  +..++.+ +.+|+|||| .||..|+.++|++|++++ .+ ++.+ | ..|+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll-~--~~~~~~~-d~~g~t~L~-~A~~~g~~~~v~~Ll~~g-a~-~~~~-~~~~g~t  113 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLL-E--DRDVDAV-DENGRTALL-FVAGLGSDKCVRLLAEAG-AD-LDHR-DMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTT-T--TCCTTCB-CTTSCBHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CSSSCCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHH-c--CCCCCCc-CCCCCCHHH-HHHHCCCHHHHHHHHHcC-CC-CCcC-CCCCCCC
Confidence            346899999999999999999999 4  4455554 889999999 999999999999999994 34 6666 6 88999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHH
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLL  189 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~L  189 (658)
                      |||+||..|+.+++++|++.++++ +..+.           . |.||||+|+..++                ...+.|||
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~-----------~-g~t~l~~A~~~~~----------------~~~~~~~l  164 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADI-EVEDE-----------R-GLTALELAREILK----------------TTPKGNPM  164 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-CCCHHHHHHHHHT----------------TCCCSSHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-----------C-CCcHHHHHHHHHh----------------ccCCCCHH
Confidence            999999999999999999999886 45555           6 9999999997432                25679999


Q ss_pred             HHHHhcCcHHHHHHHHHhC
Q 006173          190 KFLIDSNLFDMALALLKCH  208 (658)
Q Consensus       190 h~A~~~g~~~iv~~LL~~~  208 (658)
                      |+|+..|+.++++.|++..
T Consensus       165 ~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          165 QFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhc
Confidence            9999999999999999863

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.8e-20  Score=190.76  Aligned_cols=138  Identities=13%  Similarity=0.040  Sum_probs=115.8

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCcccccc------ccCCCCChHHHHHHhc---CCHHHHHHHHhcCCCCCcccccC
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQN------FARDEGSEYMEYAVST---GKLNLITTLMGYNEELPNIKVEK  140 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~------~~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~l~~~~~~~  140 (658)
                      +.++|| .|+..|+.+.|+.|++.+ .+ ++.      . |..|.||||+|+..   |+.+++++|++.++++ +..+. 
T Consensus       151 ~~~~L~-~A~~~g~~~~v~~ll~~g-~d-~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~-  224 (301)
T 2b0o_E          151 EPQRLW-TAICNRDLLSVLEAFANG-QD-FGQPLPGPDA-QAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA-  224 (301)
T ss_dssp             CHHHHH-HHHHTTCHHHHHHHHHTT-CC-TTSCEECSSS-CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCT-
T ss_pred             hHHHHh-hhhhccCHHHHHHHHhcC-Cc-ccccCCCccc-CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCC-
Confidence            356799 999999999999999884 33 444      6 88999999999997   8999999999999886 44455 


Q ss_pred             CCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCC
Q 006173          141 KDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGET  219 (658)
Q Consensus       141 ~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g  219 (658)
                                . |+||||+|+..|+.++|++|++++++ ..+|..|.||||+|+..|+.+++++|++.+.+       .|
T Consensus       225 ----------~-G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g  286 (301)
T 2b0o_E          225 ----------D-GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TF  286 (301)
T ss_dssp             ----------T-CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TT
T ss_pred             ----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CC
Confidence                      6 99999999999999999999999996 68899999999999999999999999987543       58


Q ss_pred             CcHhHHHhcCCC
Q 006173          220 GKILESLSKRPK  231 (658)
Q Consensus       220 ~TpLh~Aa~~~~  231 (658)
                      .||||+|++.+.
T Consensus       287 ~tpLh~A~~~g~  298 (301)
T 2b0o_E          287 AFPLHVDYSWVI  298 (301)
T ss_dssp             SSCCC-------
T ss_pred             CChhHHHHhcCC
Confidence            999999998863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.5e-20  Score=164.55  Aligned_cols=114  Identities=16%  Similarity=0.245  Sum_probs=83.1

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +..|+|||| .|+..|+.++|+.|++.+ .+ ++.. |..|+||||+||..|+.+++++|++.++++ +..+.       
T Consensus         4 ~~~~~~~l~-~A~~~~~~~~v~~ll~~~-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~-------   71 (123)
T 3aaa_C            4 GSMCDKEFM-WALKNGDLDEVKDYVAKG-ED-VNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDK-------   71 (123)
T ss_dssp             ---CHHHHH-HHHHTTCHHHHHHHHHTT-CC-TTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-------
T ss_pred             ccccchHHH-HHHHcCCHHHHHHHHHcC-CC-cCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC-------
Confidence            456778888 888888888888888773 33 6667 778888888888888888888888777664 34444       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCc
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNL  197 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~  197 (658)
                          . |+||||+|+..|+.+++++|++++++ ..+|..|.||||+|...+.
T Consensus        72 ----~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           72 ----H-HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             ----T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHH
T ss_pred             ----C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHH
Confidence                5 88888888888888888888888774 5677778888887754433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=1e-20  Score=192.60  Aligned_cols=141  Identities=11%  Similarity=0.055  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHhCCHHHHHHHHhhcCccccccc-----ccCCCCcHHHHhhhcC---CChHHHHHHHhcCCccccccccCC
Q 006173           34 SYKQVTRYILENDWKGLEDYIMSKTPNALTCI-----IVDQSSIFEFIVGIPD---VPATLVDKLLSKVPRNCLQNFARD  105 (658)
Q Consensus        34 ~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~-----~~~~g~T~Lh~~Aa~~---g~~~iv~~Ll~~~~~~~l~~~~d~  105 (658)
                      ..++|+.|+..|+.+.++.++ +.. ..++..     .+..|+|||| +|+..   |+.++|++|++.+ .+ ++.+ |.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll-~~g-~d~~~~~~~~~~~~~g~t~Lh-~A~~~~~~~~~~iv~~Ll~~g-ad-vn~~-d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAF-ANG-QDFGQPLPGPDAQAPEELVLH-LAVKVANQASLPLVDFIIQNG-GH-LDAK-AA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHH-HTT-CCTTSCEECSSSCSCEECHHH-HHHHTCCTTTHHHHHHHHHHS-SC-TTCC-CT
T ss_pred             hHHHHhhhhhccCHHHHHHHH-hcC-CcccccCCCcccCCCCccHHH-HHHHhcccCcHHHHHHHHhcC-CC-CCCC-CC
Confidence            346799999999999999999 443 334432     3778999999 99987   8999999999994 34 8888 99


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcc
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQG  185 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g  185 (658)
                      +|+||||+|+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++     .|
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~-----------~-G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g  286 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNE-----------A-GETALDIARKKHHKECEELLEQAQAG-----TF  286 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHHHHHH-----TT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-----------C-CCCHHHHHHHcCCHHHHHHHHHhcCC-----CC
Confidence            9999999999999999999999999886 55565           6 99999999999999999999998774     58


Q ss_pred             hhHHHHHHhcCcH
Q 006173          186 FVLLKFLIDSNLF  198 (658)
Q Consensus       186 ~t~Lh~A~~~g~~  198 (658)
                      .||||+|+..|+.
T Consensus       287 ~tpLh~A~~~g~~  299 (301)
T 2b0o_E          287 AFPLHVDYSWVIS  299 (301)
T ss_dssp             SSCCC--------
T ss_pred             CChhHHHHhcCCc
Confidence            9999999998864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=2.4e-20  Score=181.39  Aligned_cols=126  Identities=16%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhc-CCCCCcccccCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGY-NEELPNIKVEKKDDPN  145 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~-~~~l~~~~~~~~~d~~  145 (658)
                      +.+|.|||| .||..|+.++|+.|++.+ .+ ++.+ |..|+||||+||..|+.++|++|++. ++++ +..+.      
T Consensus        70 ~~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~------  138 (222)
T 3ehr_A           70 AESIDNPLH-EAAKRGNLSWLRECLDNR-VG-VNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNK------  138 (222)
T ss_dssp             EEEESCHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCT------
T ss_pred             ccccccccc-cccccCcHHHHHHHHhCC-CC-cccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCC------
Confidence            557889999 999999999999999984 33 7788 99999999999999999999999998 6664 45555      


Q ss_pred             CcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCC
Q 006173          146 IKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHP  209 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~  209 (658)
                           . |+||||+|+..|+.+++++|++++++ ..+|..|.||||+|+..++.++++.|++...
T Consensus       139 -----~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          139 -----L-GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             -----T-SCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             -----C-CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence                 6 99999999999999999999999985 6789999999999999999999999988744

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.80  E-value=3.4e-20  Score=165.53  Aligned_cols=128  Identities=10%  Similarity=0.047  Sum_probs=108.2

Q ss_pred             hhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCCh
Q 006173           30 KDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSE  109 (658)
Q Consensus        30 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~T  109 (658)
                      .+.++.+|||.|+..|+.+.++.++ + .+..++.+ +..|+|||| .|+..|+.+++++|++.+ .+ ++.+ |..|.|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll-~-~g~~~~~~-~~~g~t~L~-~A~~~~~~~~~~~Ll~~g-~~-~~~~-~~~g~t   78 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLL-Q-NGSDPNVK-DHAGWTPLH-EACNHGHLKVVELLLQHK-AL-VNTT-GYQNDS   78 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHH-H-TTCCSCCC-CTTSCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CGGGCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-H-cCCCCCcC-CCCCCCHHH-HHHHcCCHHHHHHHHHcC-Cc-ccCc-CCCCCC
Confidence            3466889999999999999999999 4 44445544 889999999 999999999999999984 33 7788 999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      |||+|+..|+.+++++|++.++++ +..+.           . |.||||+|+..+..+++++|.+...
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-----------~-g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASR-NAVNI-----------F-GLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-----------C-CCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999998885 55555           6 9999999999999999998877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.79  E-value=1.7e-19  Score=157.65  Aligned_cols=118  Identities=12%  Similarity=0.107  Sum_probs=99.0

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      ..+.+|||.|+..|+.+.++.++ +. +..++.+ +..|+|||| .|+..|+.++|++|++.+ .+ ++.+ |..|+|||
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll-~~-~~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~~~~-d~~g~tpL   77 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYV-AK-GEDVNRT-LEGGRKPLH-YAADCGQLEILEFLLLKG-AD-INAP-DKHHITPL   77 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHH-HT-TCCTTSC-CTTSSCHHH-HHHHTTCHHHHHHHHTTT-CC-TTCC-CTTSCCHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHH-Hc-CCCcCcc-CCCCCcHHH-HHHHcCCHHHHHHHHHcC-CC-CCcC-CCCCCCHH
Confidence            34679999999999999999999 44 3445544 889999999 999999999999999984 34 7888 99999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 006173          112 EYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAV  169 (658)
Q Consensus       112 h~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv  169 (658)
                      |+|+..|+.+++++|++.++++ +.++.           . |.||||+|+..+..+++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-----------~-g~t~l~~A~~~~~~~ll  122 (123)
T 3aaa_C           78 LSAVYEGHVSCVKLLLSKGADK-TVKGP-----------D-GLTAFEATDNQAIKALL  122 (123)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHCCCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCcCC-----------C-CCCHHHHhCCHHHHHHh
Confidence            9999999999999999999885 55555           6 99999999655555443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=1.5e-19  Score=181.83  Aligned_cols=124  Identities=11%  Similarity=0.049  Sum_probs=72.1

Q ss_pred             CcHHHHhhhcCCChHHHHHHHhcCCccc----cccccCCCCChHHHHHHhc---CCHHHHHHHHhcCCCCCcccccCCCC
Q 006173           71 SIFEFIVGIPDVPATLVDKLLSKVPRNC----LQNFARDEGSEYMEYAVST---GKLNLITTLMGYNEELPNIKVEKKDD  143 (658)
Q Consensus        71 ~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~----l~~~~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~l~~~~~~~~~d  143 (658)
                      .++|| .|+..|+.+.++.+++.+....    ++.. |..|.||||+||..   |+.+++++|++.++++ +.++.    
T Consensus       131 l~~l~-~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~----  203 (278)
T 1dcq_A          131 LHSLC-EAVKTRDIFGLLQAYADGVDLTEKIPLANG-HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTG----  203 (278)
T ss_dssp             HHHHH-HHHHTTCHHHHHHHHHTTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCT----
T ss_pred             hhhhh-hHhhhcccHHHHHHHHhhcchhhhcccccc-ccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCC----
Confidence            45666 6666666666666665532211    3444 55666666666665   5666666666666554 33333    


Q ss_pred             CCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCC
Q 006173          144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHP  209 (658)
Q Consensus       144 ~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~  209 (658)
                             . |+||||+|+..|+.++|++|++++++ +.+|..|.||||+|+..|+.+++++|++.+.
T Consensus       204 -------~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          204 -------K-GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             -------T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             -------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                   4 66666666666666666666666653 4556666666666666666666666665543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=1.4e-19  Score=175.90  Aligned_cols=128  Identities=10%  Similarity=0.082  Sum_probs=106.0

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      ..+.+|||.||..|+.+.++.|+ + .+..++.+ +..|+|||| .||..|+.++|++|++..+ .+++.+ |..|+|||
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll-~-~g~~~~~~-~~~g~t~L~-~A~~~~~~~~v~~Ll~~~g-~~~~~~-d~~g~tpL  144 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECL-D-NRVGVNGL-DKAGSTALY-WACHGGHKDIVEMLFTQPN-IELNQQ-NKLGDTAL  144 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHH-H-TTCCTTCC-CTTSCCHHH-HHHHTTCHHHHHHHTTSTT-CCCCCC-CTTSCCHH
T ss_pred             cccccccccccccCcHHHHHHHH-h-CCCCcccc-CCCCCCHHH-HHHHcCCHHHHHHHHcCCC-CCcccc-CCCCCCHH
Confidence            34679999999999999999999 4 44445544 889999999 9999999999999999833 348888 99999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173          112 EYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       112 h~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      |+|+..|+.+++++|+++++++ +..+.           . |.||||+|+..|+.++++.|++.++.
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-----------~-g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGART-DLRNI-----------E-KKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-CCCCT-----------T-SCCHHHHCCSHHHHHHHC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-ccccC-----------C-CCCHHHHhcchhHHHHHHHHhccchh
Confidence            9999999999999999999886 55666           6 99999999999999999999999883

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=8.8e-19  Score=144.89  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=81.7

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      +|+|||| .|+..|+.+++++|++.+ .+ ++.+ |..|+||||+|+..|+.+++++|++.++++ +.++.         
T Consensus         1 ~g~t~L~-~A~~~~~~~~v~~Ll~~g-~~-~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~---------   66 (93)
T 1n0q_A            1 NGRTPLH-LAARNGHLEVVKLLLEAG-AD-VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK---------   66 (93)
T ss_dssp             --CCHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT---------
T ss_pred             CCCcHHH-HHHHcCCHHHHHHHHHcC-CC-Cccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC---------
Confidence            5899999 999999999999999984 33 7888 999999999999999999999999998885 44555         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                        . |+||||+|+..|+.+++++|+++|+
T Consensus        67 --~-g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           67 --N-GRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             --T-SCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             --C-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence              6 9999999999999999999999886

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=2.7e-18  Score=172.57  Aligned_cols=128  Identities=16%  Similarity=0.166  Sum_probs=110.6

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCccccccc-----ccCCCCcHHHHhhhcC---CChHHHHHHHhcCCcccccccc
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCI-----IVDQSSIFEFIVGIPD---VPATLVDKLLSKVPRNCLQNFA  103 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~-----~~~~g~T~Lh~~Aa~~---g~~~iv~~Ll~~~~~~~l~~~~  103 (658)
                      ...+++|+.|+..||.+.++.++ +...+ +...     .+..|+|||| .|+..   |+.++|++|++++ .+ ++.+ 
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll-~~g~~-~~~~~~l~~~~~~g~t~Lh-~A~~~~~~~~~~~v~~Ll~~g-a~-in~~-  201 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAY-ADGVD-LTEKIPLANGHEPDETALH-LAVRSVDRTSLHIVDFLVQNS-GN-LDKQ-  201 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH-HTTCC-TTSBCCCSSCSSTTCBHHH-HHHHHCCTTTHHHHHHHHHHC-SC-TTCC-
T ss_pred             chhhhhhhhHhhhcccHHHHHHH-Hhhcc-hhhhccccccccCCCCcch-HHHHhcccchHHHHHHHHHCC-CC-cccc-
Confidence            34678999999999999999999 44433 2222     2778999999 99998   8999999999994 44 8888 


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      |..|+||||+|+..|+.++|++|++.|+++ +.++.           . |.||||+|+..|+.+++++|+++++.
T Consensus       202 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~-----------~-g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          202 TGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANE-----------S-GETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999885 55555           6 99999999999999999999999883

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=2.3e-18  Score=179.23  Aligned_cols=144  Identities=12%  Similarity=0.076  Sum_probs=110.7

Q ss_pred             CCCcHHHHhhhcC-CChHHHHHHHhcCCccccccccC--CCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCC
Q 006173           69 QSSIFEFIVGIPD-VPATLVDKLLSKVPRNCLQNFAR--DEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPN  145 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~-g~~~iv~~Ll~~~~~~~l~~~~d--~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~  145 (658)
                      .+.|+|| .|+.. |+.++|+.|++.+. + ++.. |  ..|.||||+||..|+.++|++|++.++++ +..+.      
T Consensus       198 ~~~t~L~-~Aa~~~g~~~~v~~LL~~Ga-d-vn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~------  266 (368)
T 3jue_A          198 HPGALLF-RASGHPPSLPTMADALAHGA-D-VNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADS------  266 (368)
T ss_dssp             CHHHHHH-HHTSSSCCHHHHHHHHHTTC-C-TTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT------
T ss_pred             CCCcHHH-HHHHccCCHHHHHHHHHcCC-C-CCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCC------
Confidence            4568999 99999 99999999999853 3 6666 6  89999999999999999999999999886 44555      


Q ss_pred             CcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCC--ccccccCCCCcH
Q 006173          146 IKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPM--IARADIGETGKI  222 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~--~~~~~d~~g~Tp  222 (658)
                           . |+||||+|+..|+.+++++|++++++ ...|..|.||||+|+..|+.+++++|++....  .....+..+.|+
T Consensus       267 -----~-G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~  340 (368)
T 3jue_A          267 -----A-GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY  340 (368)
T ss_dssp             -----T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------
T ss_pred             -----C-CCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCH
Confidence                 6 99999999999999999999999995 67899999999999999999999999976432  223445668888


Q ss_pred             hHHHhcC
Q 006173          223 LESLSKR  229 (658)
Q Consensus       223 Lh~Aa~~  229 (658)
                      ++++...
T Consensus       341 l~i~~~~  347 (368)
T 3jue_A          341 LDIFRDF  347 (368)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            8866654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=2.4e-18  Score=179.05  Aligned_cols=146  Identities=12%  Similarity=0.088  Sum_probs=111.2

Q ss_pred             hhhhhhhHHHHHHHHh-CCHHHHHHHHhhcCccccccccc--CCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCC
Q 006173           29 IKDIDSYKQVTRYILE-NDWKGLEDYIMSKTPNALTCIIV--DQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARD  105 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~-G~~~~v~~ll~~~~~~~~~~~~~--~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~  105 (658)
                      .......++||.|+.. |+.+.++.+| + ++..++.. +  .+|.|||| .|+..|+.++|++|++++ .+ ++.. |.
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL-~-~Gadvn~~-~~~~~g~TpLh-~Aa~~g~~~iv~~LL~~G-ad-vn~~-d~  266 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADAL-A-HGADVNWV-NGGQDNATPLI-QATAANSLLACEFLLQNG-AN-VNQA-DS  266 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHH-H-TTCCTTCC-CTTTTCCCHHH-HHHHTTCHHHHHHHHHTT-CC-TTCC-CT
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHH-H-cCCCCCcc-ccccCCCCHHH-HHHHCCCHHHHHHHHHcC-CC-CCCC-CC
Confidence            3344577899999999 9999999999 4 44555544 4  78999999 999999999999999994 34 8888 99


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC----CCC
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE----PLD  181 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~----~~~  181 (658)
                      .|+||||+|+..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|+..+..    ...
T Consensus       267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~-~~~d~-----------~-G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~  333 (368)
T 3jue_A          267 AGRGPLHHATILGHTGLACLFLKRGADL-GARDS-----------E-GRDPLTIAMETANADIVTLLRLAKMREAEAAQG  333 (368)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHHC--------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCcCCC-CCcCC-----------C-CCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence            9999999999999999999999999886 55555           6 99999999999999999999988752    345


Q ss_pred             CCcchhHHHHHHh
Q 006173          182 GRQGFVLLKFLID  194 (658)
Q Consensus       182 ~~~g~t~Lh~A~~  194 (658)
                      +..+.|+++.+..
T Consensus       334 ~~~~~t~l~i~~~  346 (368)
T 3jue_A          334 QAGDETYLDIFRD  346 (368)
T ss_dssp             -------------
T ss_pred             CCCCCCHHHHHHH
Confidence            5667777776654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=8.2e-18  Score=139.00  Aligned_cols=91  Identities=21%  Similarity=0.369  Sum_probs=81.9

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCc
Q 006173          106 EGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQ  184 (658)
Q Consensus       106 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~  184 (658)
                      +|+||||+||..|+.+++++|++.++++ +.++.           . |+||||+|+..|+.+++++|++++++ +.+|..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~-----------~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~   67 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK-----------N-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN   67 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            4899999999999999999999998885 44555           6 99999999999999999999999985 678999


Q ss_pred             chhHHHHHHhcCcHHHHHHHHHhCC
Q 006173          185 GFVLLKFLIDSNLFDMALALLKCHP  209 (658)
Q Consensus       185 g~t~Lh~A~~~g~~~iv~~LL~~~~  209 (658)
                      |.||||+|+..|+.++++.|++++.
T Consensus        68 g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           68 GRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999998753

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=9.3e-18  Score=144.63  Aligned_cols=95  Identities=21%  Similarity=0.288  Sum_probs=55.0

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      |.+|+|||| .||..|+.++++.|++.+ .+ ++.. |..|.||||+|+..|+.+++++|++.++++ +..+.       
T Consensus         6 d~~g~t~L~-~A~~~~~~~~~~~Ll~~g-~~-~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~-------   73 (115)
T 2l6b_A            6 SKDGNTPLH-NAAKNGHAEEVKKLLSKG-AD-VNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSK-------   73 (115)
T ss_dssp             SCSSCCHHH-HHHHHTCHHHHHHHTTTT-CC-SSCC-CSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCT-------
T ss_pred             CCCCCCHHH-HHHHcCCHHHHHHHHHcC-CC-CCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCC-------
Confidence            455666666 666666666666666652 22 4555 566666666666666666666666655553 23333       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                          . |+||||+|+..|+.+++++|++++++
T Consensus        74 ----~-g~tpl~~A~~~~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           74 ----D-GNTPEHLAKKNGHHEIVKLLDAKGAD  100 (115)
T ss_dssp             ----T-CCCTTHHHHTTTCHHHHHHHHTTSSS
T ss_pred             ----C-CCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence                3 66666666666666666666666553

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.69  E-value=3.6e-17  Score=140.94  Aligned_cols=106  Identities=17%  Similarity=0.225  Sum_probs=93.1

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDG  182 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~  182 (658)
                      |++|.||||+||..|+.+++++|++.++++ +..+.           . |.||||+|+..|+.+++++|++++++ ..+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~-----------~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d   72 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSK-----------D-GNTPLHLAAKNGHAEIVKLLLAKGADVNARS   72 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCS-----------S-SCCTTHHHHTTTCHHHHHHHTTTTCCTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-----------C-CCCHHHHHHHcCcHHHHHHHHHcCCCCcccC
Confidence            899999999999999999999999998875 44455           6 99999999999999999999999985 6788


Q ss_pred             CcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHh
Q 006173          183 RQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKIL  223 (658)
Q Consensus       183 ~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpL  223 (658)
                      ..|.||||+|+..|+.++++.|++++.+ ++.++..|.||=
T Consensus        73 ~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~~  112 (115)
T 2l6b_A           73 KDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHH  112 (115)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTSSS-HHHHSCCCC---
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCccccccc
Confidence            9999999999999999999999988554 577888888873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.63  E-value=3.9e-16  Score=133.27  Aligned_cols=92  Identities=12%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             ccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCC
Q 006173           64 CIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDD  143 (658)
Q Consensus        64 ~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d  143 (658)
                      ...+.+|+|||| .|+..|+.+++++|++.+ .+ ++.+ |..|+||||+||..|+.+++++|++.++++ +..+.    
T Consensus        18 ~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g-~~-i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~----   88 (110)
T 2zgd_A           18 SHMGSDLGKKLL-EAARAGQDDEVRILMANG-AD-VAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDK----   88 (110)
T ss_dssp             ----CCHHHHHH-HHHHHTCHHHHHHHHHTT-CC-TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT----
T ss_pred             cccCCccchHHH-HHHHcCCHHHHHHHHHcC-CC-CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccc----
Confidence            345788999999 999999999999999984 33 7788 999999999999999999999999998885 44555    


Q ss_pred             CCCcccCCCCCcHHHHHHHhCcHHHHHHh
Q 006173          144 PNIKDEEKDDLLPVHMAAKAGKRDAVRHL  172 (658)
Q Consensus       144 ~~~~~~~~~G~TpLh~Aa~~g~~~iv~~L  172 (658)
                             . |+||||+|+..|+.+++++|
T Consensus        89 -------~-g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 -------F-GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -------T-SCCHHHHHHHHTCHHHHHHH
T ss_pred             -------C-CCcHHHHHHHcCCHHHHHHh
Confidence                   6 99999999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.60  E-value=1.8e-15  Score=129.13  Aligned_cols=92  Identities=21%  Similarity=0.275  Sum_probs=80.0

Q ss_pred             cccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173           99 LQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus        99 l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                      .... |.+|.||||+||..|+.+++++|++.++++ +..+.           . |.||||+||..|+.+++++|++++++
T Consensus        17 ~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~-----------~-g~tpLh~A~~~~~~~~v~~Ll~~ga~   82 (110)
T 2zgd_A           17 GSHM-GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK-----------N-GSTPLHLAARNGHLEVVKLLLEAGAD   82 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-CCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccc-CCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3444 889999999999999999999999998875 44455           6 99999999999999999999999985


Q ss_pred             -CCCCCcchhHHHHHHhcCcHHHHHHH
Q 006173          179 -PLDGRQGFVLLKFLIDSNLFDMALAL  204 (658)
Q Consensus       179 -~~~~~~g~t~Lh~A~~~g~~~iv~~L  204 (658)
                       ..+|..|.||||+|+..|+.+++++|
T Consensus        83 ~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence             67899999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	658
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.76

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-38  Score=332.14  Aligned_cols=349  Identities=15%  Similarity=0.128  Sum_probs=251.5

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHH
Q 006173           35 YKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYA  114 (658)
Q Consensus        35 ~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~A  114 (658)
                      .||||.||..|+.+.|+.|+ +. +..++.+ |.+|+|||| +||..|+.++|++|+++| .+ ++.. |.+|.||||+|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll-~~-g~~in~~-d~~g~TpL~-~A~~~g~~~iv~~Ll~~g-ad-i~~~-~~~g~t~L~~A   73 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLL-QR-GASPNVS-NVKVETPLH-MAARAGHTEVAKYLLQNK-AK-VNAK-AKDDQTPLHCA   73 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-HT-TCCSCCS-SSCCCCHHH-HHHHHTCHHHHHHHHHHT-CC-SSCC-CTTSCCHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHH-HC-CCCCCCC-CCCCCCHHH-HHHHcCCHHHHHHHHHCc-CC-CCCC-CCCCCCHHHHH
Confidence            38999999999999999999 44 4556655 889999999 999999999999999995 33 8888 99999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCCccccc----------------------CCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh
Q 006173          115 VSTGKLNLITTLMGYNEELPNIKVE----------------------KKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHL  172 (658)
Q Consensus       115 a~~G~~~iv~~Ll~~~~~l~~~~~~----------------------~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~L  172 (658)
                      +..|+.+++++|+...++.......                      .+...+.++. . |.+||+.|+..++.+++++|
T Consensus        74 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~a~~~~~~~~v~~l  151 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-K-GFTPLHVAAKYGKVRVAELL  151 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-T-SCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhccccccccccccccccccccc-c-cchHHHHHHHcCCHHHHHHH
Confidence            9999999999999887654322221                      1233344454 6 99999999999999999999


Q ss_pred             ccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhccccc
Q 006173          173 LPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIP  251 (658)
Q Consensus       173 l~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~  251 (658)
                      ++++.+ ...+.+|.+|||+|+..|+.++++.|++++.+ .+..+..|.||||.+......       .....++.....
T Consensus       152 l~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~-------~~~~~l~~~~~~  223 (408)
T d1n11a_         152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQV-------EVARSLLQYGGS  223 (408)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCH-------HHHHHHHHTTCC
T ss_pred             HHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchh-------hhhhhhhhcccc
Confidence            999985 57788999999999999999999999998654 477888999999999887422       222222211110


Q ss_pred             ccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHH
Q 006173          252 IQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTL  331 (658)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  331 (658)
                      ....        .  ..+.-.                                 +             ........   .
T Consensus       224 ~~~~--------~--~~~~t~---------------------------------l-------------~~a~~~~~---~  244 (408)
T d1n11a_         224 ANAE--------S--VQGVTP---------------------------------L-------------HLAAQEGH---A  244 (408)
T ss_dssp             TTCC--------C--TTCCCH---------------------------------H-------------HHHHHTTC---H
T ss_pred             cccc--------C--CCCCCH---------------------------------H-------------HHHHHhCc---H
Confidence            0000        0  000000                                 0             00000000   1


Q ss_pred             HHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhc
Q 006173          332 EILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFN  411 (658)
Q Consensus       332 ~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  411 (658)
                      ++++...    .........+..|.||+|.|++.++.+++++|++++ .+ ++..+..+.||||.|+..++.++++++++
T Consensus       245 ~~~~~~~----~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~-~~~~~~~~~t~L~~~~~~~~~~~~~~ll~  318 (408)
T d1n11a_         245 EMVALLL----SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ  318 (408)
T ss_dssp             HHHHHHH----TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             hHhhhhh----ccccccccccCCCCChhhhhhhcCcHHHHHHHHHCC-Cc-cccccccccccchhhcccCcceeeeeecc
Confidence            1122221    222333345677888888888888888888888887 55 45567788888888888888888888888


Q ss_pred             CCCcccccccccccCCCchhhhHhhcCCCCCCChhHHhhHHHHHHHHHHHhhcC-cchhhhccCCCCCchhhhHHH
Q 006173          412 FPNIYPFFMANIDEKRINILHIAAMSVPSTEVPGAALQMQRELQWFKAVENCVH-PTLQDQLNDKDKTPREVFTKE  486 (658)
Q Consensus       412 ~~~~~~~~in~~D~~G~TpLHlAa~~g~~~~v~~~~l~~~~~l~~~~~v~~~~~-~~~~~~~n~~G~Tp~dl~~~~  486 (658)
                      .|+    ++|.+|.+|+||||+|++.|+.+.                 |+.++. ....+.+|++|+||++++.+.
T Consensus       319 ~g~----~in~~d~~G~T~Lh~A~~~g~~~i-----------------v~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         319 HQA----DVNAKTKLGYSPLHQAAQQGHTDI-----------------VTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             TTC----CTTCCCTTSCCHHHHHHHTTCHHH-----------------HHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             ccc----cccccCCCCCCHHHHHHHcCCHHH-----------------HHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            877    778888888888888888887421                 121111 112567888888888887654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-34  Score=301.47  Aligned_cols=317  Identities=14%  Similarity=0.111  Sum_probs=245.0

Q ss_pred             hhhhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCc------------
Q 006173           29 IKDIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPR------------   96 (658)
Q Consensus        29 ~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~------------   96 (658)
                      ..+..+.||||.||+.|+.+.++.|| +. +..++.+ +.+|+|||| +|+..|+.+++++|++....            
T Consensus        28 ~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~-gadi~~~-~~~g~t~L~-~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~  103 (408)
T d1n11a_          28 VSNVKVETPLHMAARAGHTEVAKYLL-QN-KAKVNAK-AKDDQTPLH-CAARIGHTNMVKLLLENNANPNLATTAGHTPL  103 (408)
T ss_dssp             CSSSCCCCHHHHHHHHTCHHHHHHHH-HH-TCCSSCC-CTTSCCHHH-HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHH-HC-cCCCCCC-CCCCCCHHH-HHHHcCCHHHHHHHHHhhhccccccccccchh
Confidence            34566889999999999999999999 44 4456555 889999999 99999999999999976421            


Q ss_pred             -------------------cccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHH
Q 006173           97 -------------------NCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPV  157 (658)
Q Consensus        97 -------------------~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpL  157 (658)
                                         ...... |.+|.++|+.|+..++.++++.|++.+.++ +..+.           . |.|||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~-----------~-~~~~L  169 (408)
T d1n11a_         104 HIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGK-----------N-GLTPL  169 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCS-----------S-CCCHH
T ss_pred             hhhhhhccccccccccccccccccc-ccccchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC-----------c-CchHH
Confidence                               123455 788999999999999999999999998875 44444           5 99999


Q ss_pred             HHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCC
Q 006173          158 HMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASG  236 (658)
Q Consensus       158 h~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~  236 (658)
                      |+|+..|+.+++++|+.++++ ...+..|.||+|.++.....++...++..... ....+.+|.||||+|+..+..    
T Consensus       170 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~t~l~~a~~~~~~----  244 (408)
T d1n11a_         170 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHA----  244 (408)
T ss_dssp             HHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCH----
T ss_pred             HHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccc-ccccCCCCCCHHHHHHHhCcH----
Confidence            999999999999999999985 57889999999999999999999999887443 456678899999999988532    


Q ss_pred             CCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchh
Q 006173          237 SRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPS  316 (658)
Q Consensus       237 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  316 (658)
                         .+++..+.........        ..  .+.                                              
T Consensus       245 ---~~~~~~~~~~~~~~~~--------~~--~g~----------------------------------------------  265 (408)
T d1n11a_         245 ---EMVALLLSKQANGNLG--------NK--SGL----------------------------------------------  265 (408)
T ss_dssp             ---HHHHHHHTTTCCTTCC--------CT--TCC----------------------------------------------
T ss_pred             ---hHhhhhhccccccccc--------cC--CCC----------------------------------------------
Confidence               2233222111100000        00  000                                              


Q ss_pred             hHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHH
Q 006173          317 IKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKV  396 (658)
Q Consensus       317 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~  396 (658)
                      ..........+   .++++.+++.    ..+.+..+..+.||||.|+..|+.++++.+++.+ .+ ++.+|.+|+||||+
T Consensus       266 ~~l~~a~~~~~---~~i~~~Ll~~----g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g-~~-in~~d~~G~T~Lh~  336 (408)
T d1n11a_         266 TPLHLVAQEGH---VPVADVLIKH----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-AD-VNAKTKLGYSPLHQ  336 (408)
T ss_dssp             CHHHHHHHHTC---HHHHHHHHHH----TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CC-TTCCCTTSCCHHHH
T ss_pred             ChhhhhhhcCc---HHHHHHHHHC----CCccccccccccccchhhcccCcceeeeeecccc-cc-ccccCCCCCCHHHH
Confidence            00001111111   1333334333    3344456677899999999999999999999998 55 67789999999999


Q ss_pred             HHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          397 AVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       397 A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      |+++|+.++|++|+++|+    ++|.+|++|+||||+|++.|+.
T Consensus       337 A~~~g~~~iv~~Ll~~GA----d~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         337 AAQQGHTDIVTLLLKNGA----SPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTC----CSCCCCSSSCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999999    7899999999999999999984

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-33  Score=274.72  Aligned_cols=98  Identities=13%  Similarity=0.155  Sum_probs=88.0

Q ss_pred             ccCCCCcHHHHhhhcCCChHHHHHHHhcC-CccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCC
Q 006173           66 IVDQSSIFEFIVGIPDVPATLVDKLLSKV-PRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDP  144 (658)
Q Consensus        66 ~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~-~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~  144 (658)
                      ++++|+|||| .||..|+.++|++|++.+ ....++.+ |..|.||||+||..|+.+++++|++.|+++ +..+.     
T Consensus         5 i~~~G~t~Lh-~A~~~~~~~~v~~Ll~~~a~~~~i~~~-~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~-----   76 (255)
T d1oy3d_           5 VTEDGDTALH-LAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAER-----   76 (255)
T ss_dssp             CCTTCCCHHH-HHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-----
T ss_pred             CCcCCCCHHH-HHHHcCCHHHHHHHHHcCCCcccccCc-CCCCCCccchHHhhcccccccccccccccc-ccccc-----
Confidence            5889999999 999999999999999986 34557888 999999999999999999999999998885 45555     


Q ss_pred             CCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC
Q 006173          145 NIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE  178 (658)
Q Consensus       145 ~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  178 (658)
                            + |.||||+|+..|+.+++++|++....
T Consensus        77 ------~-g~tpL~~A~~~~~~~~~~~Ll~~~~~  103 (255)
T d1oy3d_          77 ------G-GHTALHLACRVRAHTCACVLLQPRPS  103 (255)
T ss_dssp             ------T-SCCHHHHHTTTTCHHHHHHHSSSCCS
T ss_pred             ------c-cchhhhhhhccCchHHHHHHHhhccc
Confidence                  6 99999999999999999999998763

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.8e-32  Score=262.25  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      +.|+.+|..|+.+.++.+| +.++..++.+ |.+|+|||| +||..|+.+++++|++.+. . .... +..+.++++.|+
T Consensus         5 ~~~~~~a~~G~~~~v~~~l-~~~~~~~~~~-D~~G~TpLh-~Aa~~g~~e~~~~l~~~~~-~-~~~~-~~~~~~~~~~~~   78 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESI-LADKSLATRT-DQDSRTALH-WACSAGHTEIVEFLLQLGV-P-VNDK-DDAGWSPLHIAA   78 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHH-HHCGGGGGCC-CTTSCCHHH-HHHHHTCHHHHHHHHHHTC-C-SCCC-CTTCCCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHH-HhCCCcCcCc-CCCCCCHHH-HHHHhhhhccccccccccc-c-cccc-cccccccccccc
Confidence            3455566666666666666 4555444433 556666666 6666666666666665522 1 2233 445566666666


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHh
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLID  194 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~  194 (658)
                      ..|+.+++++|+++++++ +..+.           . |.||||+|+..|+.+++++|++++.+ +.++..|.||||+|+.
T Consensus        79 ~~~~~~i~~~Ll~~~~d~-~~~d~-----------~-g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~  145 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQV-NAVNQ-----------N-GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA  145 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCT-----------T-CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccchhHHHhccCcee-EeeCC-----------C-CCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhh
Confidence            666666666666655543 33333           4 66666666666666666666665553 3455555555555555


Q ss_pred             cCcHHHHHHHHHh
Q 006173          195 SNLFDMALALLKC  207 (658)
Q Consensus       195 ~g~~~iv~~LL~~  207 (658)
                      .++.++++.|++.
T Consensus       146 ~~~~~~~~~L~~~  158 (223)
T d1uoha_         146 KGNLKMIHILLYY  158 (223)
T ss_dssp             TTCHHHHHHHHHT
T ss_pred             cCCcchhhhhccc
Confidence            5555555555443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1e-31  Score=259.99  Aligned_cols=207  Identities=15%  Similarity=0.193  Sum_probs=171.0

Q ss_pred             CCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCccc
Q 006173           70 SSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDE  149 (658)
Q Consensus        70 g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~  149 (658)
                      +++.|+ .+|..|+.+.|+.++.. .+..++.+ |.+|+||||+||..|+.+++++|++.+.......+           
T Consensus         3 ~~~~~~-~~a~~G~~~~v~~~l~~-~~~~~~~~-D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~-----------   68 (223)
T d1uoha_           3 SNLMVC-NLAYSGKLEELKESILA-DKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-----------   68 (223)
T ss_dssp             SSSHHH-HHHHTTCHHHHHHHHHH-CGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT-----------
T ss_pred             CHHHHH-HHHHhCCHHHHHHHHHh-CCCcCcCc-CCCCCCHHHHHHHhhhhcccccccccccccccccc-----------
Confidence            368899 99999999999999988 55668899 99999999999999999999999999887644444           


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhc
Q 006173          150 EKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSK  228 (658)
Q Consensus       150 ~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~  228 (658)
                       . +.++++.|+..|+.+++++|++++++ +..|.+|.||||+|+..|+.++++.|++++.+. +.+             
T Consensus        69 -~-~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~-------------  132 (223)
T d1uoha_          69 -A-GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAK-------------  132 (223)
T ss_dssp             -T-CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCC-------------
T ss_pred             -c-ccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCc-------------
Confidence             3 99999999999999999999999985 678999999999999999999999999874322 222             


Q ss_pred             CCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHh
Q 006173          229 RPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWN  308 (658)
Q Consensus       229 ~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (658)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (223)
T d1uoha_         133 --------------------------------------------------------------------------------  132 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccccccc
Q 006173          309 NLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNK  388 (658)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~  388 (658)
                                                                 +..|.||||+|+..|+.++++.|++.+ .+ ++.+|.
T Consensus       133 -------------------------------------------~~~~~t~L~~a~~~~~~~~~~~L~~~~-~~-i~~~d~  167 (223)
T d1uoha_         133 -------------------------------------------DHYEATAMHRAAAKGNLKMIHILLYYK-AS-TNIQDT  167 (223)
T ss_dssp             -------------------------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTT-CC-SCCCCT
T ss_pred             -------------------------------------------CCCCCccchhhhhcCCcchhhhhcccc-ce-eeeccC
Confidence                                                       334667777777777777777777776 44 566788


Q ss_pred             CCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHh
Q 006173          389 DGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAA  435 (658)
Q Consensus       389 ~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa  435 (658)
                      +|+||||+|+..|+.+++++|++.|+    +++.+|.+|+||||+|+
T Consensus       168 ~g~TpL~~Aa~~g~~~~v~~LL~~Ga----d~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         168 EGNTPLHLACDEERVEEAKLLVSQGA----SIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCHHHHCC
T ss_pred             CCCceeccccccCcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHH
Confidence            88888888888888888888888877    66788888888888773

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6e-31  Score=264.16  Aligned_cols=271  Identities=12%  Similarity=0.052  Sum_probs=222.0

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHH
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYM  111 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpL  111 (658)
                      +++.+.||.|++.||.+.|+.|+ + .+.+++.+.+..|+|||| .|+..|+.++++.|++.+. . .... +..+.+|.
T Consensus         3 ~~~~~~L~~Ai~~~~~e~vk~Ll-~-~G~din~~~~~~g~tpL~-~A~~~~~~eiv~~L~~~~~-~-~~~~-~~~~~~~~   76 (285)
T d1wdya_           3 VEDNHLLIKAVQNEDVDLVQQLL-E-GGANVNFQEEEGGWTPLH-NAVQMSREDIVELLLRHGA-D-PVLR-KKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH-H-TTCCTTCCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTC-C-TTCC-CTTCCCHH
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHH-H-CCCCcCccCCCCCCCHHH-HHHHcCCHHHhhhhccccc-c-cccc-ccccchhh
Confidence            46779999999999999999999 4 455576676778999999 9999999999999999843 3 5556 78899999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-----------CC
Q 006173          112 EYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-----------PL  180 (658)
Q Consensus       112 h~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-----------~~  180 (658)
                      ++|+..+..+....+++...+.. ..+.           . |.|++++|+..|+...++.++.....           ..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~-~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (285)
T d1wdya_          77 LLAAIAGSVKLLKLFLSKGADVN-ECDF-----------Y-GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER  143 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-CBCT-----------T-CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHH
T ss_pred             HHHhhcCCccccchhhhhccccc-cccc-----------C-CCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhh
Confidence            99999999999999999876642 3333           5 99999999999999999988877552           24


Q ss_pred             CCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCC
Q 006173          181 DGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHP  260 (658)
Q Consensus       181 ~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~  260 (658)
                      .+..|.||||+|++.|+.++++.|++..+...+..+..|.++++.+......                            
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~----------------------------  195 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----------------------------  195 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT----------------------------
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc----------------------------
Confidence            5667999999999999999999999987777788888999988866554211                            


Q ss_pred             CCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHh
Q 006173          261 HPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAG  340 (658)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  340 (658)
                              ..                                                           ...+++.+++.
T Consensus       196 --------~~-----------------------------------------------------------~~~i~~~Li~~  208 (285)
T d1wdya_         196 --------SD-----------------------------------------------------------VEAITHLLLDH  208 (285)
T ss_dssp             --------TT-----------------------------------------------------------HHHHHHHHHHT
T ss_pred             --------hH-----------------------------------------------------------HHHHHHHHHHC
Confidence                    00                                                           01223333332


Q ss_pred             hhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccc
Q 006173          341 AVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFM  420 (658)
Q Consensus       341 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~i  420 (658)
                          ..+.+.++..|.||||.|++.|+.+++++|++.+ +..++.+|.+|+||||+|+++|+.+++++|++.|+    ++
T Consensus       209 ----ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~-g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GA----d~  279 (285)
T d1wdya_         209 ----GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA----ST  279 (285)
T ss_dssp             ----TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS-SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS----CS
T ss_pred             ----CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CC
Confidence                3334457788999999999999999999999987 66788899999999999999999999999999999    77


Q ss_pred             ccccc
Q 006173          421 ANIDE  425 (658)
Q Consensus       421 n~~D~  425 (658)
                      |++|.
T Consensus       280 n~~d~  284 (285)
T d1wdya_         280 DCGDL  284 (285)
T ss_dssp             CCSSC
T ss_pred             CcccC
Confidence            88874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=4.5e-33  Score=278.58  Aligned_cols=263  Identities=12%  Similarity=0.060  Sum_probs=194.1

Q ss_pred             CcHHHHhhhcCCChHHHHHHHhcCCccccccccC-CCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCccc
Q 006173           71 SIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFAR-DEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDE  149 (658)
Q Consensus        71 ~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d-~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~  149 (658)
                      +||||+.+...|+.++++.|.+. +   ++.. | ++|+||||+||..|+.++|++|+.+...   ..-.+|+|+|.+|.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~-~---~n~~-~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~---~~l~~Gadvn~~d~   72 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRE-S---VNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAK---ECIAAGADVNAMDC   72 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTT-T---TTTC-CCSSCCCHHHHHHCTTCCSCCTTHHHHHHH---HHHHTCCCTTCCCT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhc-C---CCcC-CCCCCccHHHHHHHcCCHHHHHHHHhcchh---HHHHcCCCccccCC
Confidence            48998333445777787777766 3   3334 4 5799999999999999999888654321   00112344444444


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCC--CccccccCCCCcHhHHH
Q 006173          150 EKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHP--MIARADIGETGKILESL  226 (658)
Q Consensus       150 ~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~--~~~~~~d~~g~TpLh~A  226 (658)
                       + |+||||+|+..|+.++|++|+++|++ ..+|.+|.||||+|+..++.+++..+.....  ......+..+.++.+.+
T Consensus        73 -~-G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          73 -D-ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             -T-SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             -C-CCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence             7 99999999999999999999999996 5789999999999999999999988875432  23345677788888877


Q ss_pred             hcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHH
Q 006173          227 SKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVL  306 (658)
Q Consensus       227 a~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (658)
                      .......    .+...                                          ..+....               
T Consensus       151 ~~~~~~~----~~~~~------------------------------------------~~~~~~~---------------  169 (277)
T d2fo1e1         151 AHNEGRD----QVASA------------------------------------------KLLVEKG---------------  169 (277)
T ss_dssp             HHSCSTT----HHHHH------------------------------------------HHHHHHT---------------
T ss_pred             Hhccccc----ccccc------------------------------------------ccccccc---------------
Confidence            7664210    00000                                          0000000               


Q ss_pred             HhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCccccc
Q 006173          307 WNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFK  386 (658)
Q Consensus       307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~  386 (658)
                                                     ..............+..|.||||.++..|+.++++.++... +.....+
T Consensus       170 -------------------------------~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~-~~~~~~~  217 (277)
T d2fo1e1         170 -------------------------------AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK-GSNKDKQ  217 (277)
T ss_dssp             -------------------------------CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS-CCCTTCC
T ss_pred             -------------------------------ccccccccccccccccCCCCccccccccccccccccccccc-ccccccc
Confidence                                           00000011122335677999999999999999999988887 7777888


Q ss_pred             ccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcCCC
Q 006173          387 NKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       387 d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      |..|+||||+|++.|+.+++++|++.|+    ++|.+|.+|+||||+|++.|+.
T Consensus       218 d~~g~tpL~~A~~~g~~~iv~~Ll~~ga----din~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         218 DEDGKTPIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCSSSCCHHHHHHHTTCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCcC----CCCCcCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999999998    7899999999999999999984

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=4.2e-32  Score=268.25  Aligned_cols=230  Identities=14%  Similarity=0.069  Sum_probs=167.9

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCC--cccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELP--NIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PL  180 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~--~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~  180 (658)
                      |++|+||||+||+.|+.+++++|++.+++..  +.++.           . |+||||+||..|+.+++++|++++++ ..
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~-----------~-g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~   73 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-----------L-GQTALHLAAILGEASTVEKLYAAGAGVLV   73 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCC-----------C-CCCccchHHhhcccccccccccccccccc
Confidence            8999999999999999999999999877632  34444           6 99999999999999999999999985 67


Q ss_pred             CCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCC
Q 006173          181 DGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHP  260 (658)
Q Consensus       181 ~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~  260 (658)
                      +|.+|.||||+|+..++.++++.|++.......    ...............           .......          
T Consensus        74 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~----~~~~~~~~~~~~~~~-----------~~~~~~~----------  128 (255)
T d1oy3d_          74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPR----DASDTYLTQSQDCTP-----------DTSHAPA----------  128 (255)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCC----CC-----------------------------------------
T ss_pred             cccccchhhhhhhccCchHHHHHHHhhccchhc----ccchhhhhHHhhhcc-----------cchHHHH----------
Confidence            899999999999999999999999886443211    111000000000000           0000000          


Q ss_pred             CCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHh
Q 006173          261 HPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAG  340 (658)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  340 (658)
                                                                       ....                ...........
T Consensus       129 -------------------------------------------------~~~~----------------~~~~~~~~~~~  143 (255)
T d1oy3d_         129 -------------------------------------------------AVDS----------------QPNPENEEEPR  143 (255)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------HHHh----------------hcchhHHHHHH
Confidence                                                             0000                00000000000


Q ss_pred             hhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccc
Q 006173          341 AVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFM  420 (658)
Q Consensus       341 ~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~i  420 (658)
                      ........+.+|..|.||||+||+.|+.+++++|++.+ .+.....+..|+||||+|++.++.+++++|++.|+    ++
T Consensus       144 ~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga----di  218 (255)
T d1oy3d_         144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA----DP  218 (255)
T ss_dssp             CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CT
T ss_pred             hhhcCcccccccccCcccccccccccccccccchhccc-ccccccccccccccccccccccHHHHHHHHHHCCC----CC
Confidence            00112223347788999999999999999999999999 88777778899999999999999999999999988    78


Q ss_pred             cccccCCCchhhhHhhcCCC
Q 006173          421 ANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       421 n~~D~~G~TpLHlAa~~g~~  440 (658)
                      |.+|++|+||||+|++.++.
T Consensus       219 n~~d~~g~t~L~~A~~~~~~  238 (255)
T d1oy3d_         219 TARMYGGRTPLGSALLRPNP  238 (255)
T ss_dssp             TCCCTTSCCHHHHHHTSSCH
T ss_pred             CCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999984

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-31  Score=258.56  Aligned_cols=209  Identities=15%  Similarity=0.182  Sum_probs=154.9

Q ss_pred             CcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCc--ccccCCCCCCCcc
Q 006173           71 SIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPN--IKVEKKDDPNIKD  148 (658)
Q Consensus        71 ~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~--~~~~~~~d~~~~~  148 (658)
                      +|||| .||..|+.++|+.|++. .+..++.+ |.+|+||||+|+..|+.+++++|+++++++..  ..+.         
T Consensus         1 n~pLh-~A~~~g~~~~v~~Ll~~-~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~---------   68 (229)
T d1ixva_           1 NYPLH-QACMENEFFKVQELLHS-KPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD---------   68 (229)
T ss_dssp             CCHHH-HHHHHTCHHHHHHHHHH-CGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCT---------
T ss_pred             CHhHH-HHHHcCCHHHHHHHHHc-CCCccccc-CCCCCCHHHHHHHcCCccccchhhhhhccccccccccc---------
Confidence            47888 88888888888888876 44457777 88888888888888888888888877765421  2222         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCCC---CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHH
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTRE---PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILES  225 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~  225 (658)
                        . |.||+|+|+..+..++++.++..+..   ...+..+.|+++.++..++.++++.|++.+... .            
T Consensus        69 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~------------  132 (229)
T d1ixva_          69 --S-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-R------------  132 (229)
T ss_dssp             --T-SCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-C------------
T ss_pred             --c-ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-c------------
Confidence              4 77888888888888888877777652   346667777888888777777777777653221 0            


Q ss_pred             HhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHH
Q 006173          226 LSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFV  305 (658)
Q Consensus       226 Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (658)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (229)
T d1ixva_         133 --------------------------------------------------------------------------------  132 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccc
Q 006173          306 LWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEF  385 (658)
Q Consensus       306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~  385 (658)
                                                                  .+|..|+||||+|+..|+.++++.|++.+ +..++.
T Consensus       133 --------------------------------------------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~in~  167 (229)
T d1ixva_         133 --------------------------------------------IKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNW  167 (229)
T ss_dssp             --------------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHHTTT-CCCSCC
T ss_pred             --------------------------------------------ccCCCCCCccchhhhcccccccccccccc-cccccc
Confidence                                                        02344778888888888888888888887 777777


Q ss_pred             cccCCChHHHHHHHhCCHhHHHHHhcC-CCcccccccccccCCCchhhhHhh
Q 006173          386 KNKDGYDIFKVAVEHRREKVFNIIFNF-PNIYPFFMANIDEKRINILHIAAM  436 (658)
Q Consensus       386 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~in~~D~~G~TpLHlAa~  436 (658)
                      +|.+|+||||+|+.+|+.+++++|++. |+    +++.+|++|+||||+|+.
T Consensus       168 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~ga----d~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHCC----CSCCCCTTSCCTGGGCSC
T ss_pred             cccccCCchhhhcccccHHHHHHHHHhcCC----CCCCcCCCCCCHHHHHhh
Confidence            888888888888888888888888864 66    678888888888888874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.2e-32  Score=273.80  Aligned_cols=237  Identities=13%  Similarity=0.121  Sum_probs=188.3

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +.+|.|||| .||..|+.++|++||+.| .+ ++.+ |.+|.||||+|+..|+.++|++|++++.+. ...+.       
T Consensus        37 ~~~~~t~l~-~A~~~G~~~~v~~Ll~~G-ad-vn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~-------  104 (291)
T d1s70b_          37 KFDDGAVFL-AACSSGDTEEVLRLLERG-AD-INYA-NVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDN-------  104 (291)
T ss_dssp             EECHHHHHH-HHHHHTCHHHHHHHHHHC-CC-TTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-------
T ss_pred             CCCCchHHH-HHHHcCCHHHHHHHHHCC-CC-CCcc-CCCCCcHHHHHHhcCCceeeeeeccccccc-ccccc-------
Confidence            345679999 999999999999999995 34 7888 999999999999999999999999998875 33444       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHH
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILES  225 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~  225 (658)
                          . +.||||+|+..|+.++++.|++++.. ...|..|.+++++|+..++.+.+..++...+.........+..+.+ 
T Consensus       105 ----~-~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-  178 (291)
T d1s70b_         105 ----E-GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-  178 (291)
T ss_dssp             ----T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-
T ss_pred             ----c-ccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccccccccccccc-
Confidence                5 99999999999999999999999884 5788899999999999999999988887633221110000000000 


Q ss_pred             HhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHH
Q 006173          226 LSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFV  305 (658)
Q Consensus       226 Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (658)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (291)
T d1s70b_         179 --------------------------------------------------------------------------------  178 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccc
Q 006173          306 LWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEF  385 (658)
Q Consensus       306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~  385 (658)
                                               ......+.    .........+..|.||||.|+..|+.++++.|++.+ .+ ++.
T Consensus       179 -------------------------~~~~~~~~----~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~d-in~  227 (291)
T d1s70b_         179 -------------------------RDARQWLN----SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YD-VNI  227 (291)
T ss_dssp             -------------------------HHHHHHHH----HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CC-TTC
T ss_pred             -------------------------ccchhhhc----ccccccccccCCCCChhhHHHHcCChhhhcccccce-ec-ccc
Confidence                                     00000000    111122235667999999999999999999999998 65 567


Q ss_pred             cccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhh
Q 006173          386 KNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAM  436 (658)
Q Consensus       386 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~  436 (658)
                      +|.+|+||||+|+..|+.++|++|++.|+    ++|.+|++|+||||+|++
T Consensus       228 ~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga----dv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         228 KDYDGWTPLHAAAHWGKEEACRILVENLC----DMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTTTSCCS
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHH
Confidence            89999999999999999999999999998    789999999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-31  Score=256.48  Aligned_cols=223  Identities=15%  Similarity=0.127  Sum_probs=189.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCc-cccccccCCCCChHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPR-NCLQNFARDEGSEYMEYA  114 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~-~~l~~~~d~~G~TpLh~A  114 (658)
                      +|||+||+.|+.+.++.|| +..+..++.+ |.+|+|||| +|+..|+.++|++|++.+.. +..+.. |..|.||+|+|
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll-~~~~~~~~~~-d~~G~TpL~-~A~~~g~~~iv~~Ll~~ga~~~~~~~~-~~~~~~~~~~~   77 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELL-HSKPSLLLQK-DQDGRIPLH-WSVSFQAHEITSFLLSKMENVNLDDYP-DDSGWTPFHIA   77 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHH-HHCGGGTTCC-CTTSCCHHH-HHHHTTCHHHHHHHHTTCTTCCGGGCC-CTTSCCHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHH-HcCCCccccc-CCCCCCHHH-HHHHcCCccccchhhhhhccccccccc-ccccccccccc
Confidence            6999999999999999999 7777777655 899999999 99999999999999998632 334556 88999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCCcc-cccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHH
Q 006173          115 VSTGKLNLITTLMGYNEELPNI-KVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFL  192 (658)
Q Consensus       115 a~~G~~~iv~~Ll~~~~~l~~~-~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A  192 (658)
                      +..+..++++.++..+...... .+.           . +.|||+.++..++.+++++|++.+.. ...+..|.||||+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a  145 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITN-----------Q-GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA  145 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccccccccccc-----------c-cccccccccccchhhhhhhhhhhcccccccCCCCCCccchh
Confidence            9999999999999887653222 233           5 99999999999999999999999984 67899999999999


Q ss_pred             HhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchh
Q 006173          193 IDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLE  272 (658)
Q Consensus       193 ~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (658)
                      +..|+.++++.|++.++...+.                                                          
T Consensus       146 ~~~~~~~~~~~Ll~~~~~~in~----------------------------------------------------------  167 (229)
T d1ixva_         146 ASVGSLKLIELLCGLGKSAVNW----------------------------------------------------------  167 (229)
T ss_dssp             HHHTCHHHHHHHHTTTCCCSCC----------------------------------------------------------
T ss_pred             hhcccccccccccccccccccc----------------------------------------------------------
Confidence            9999999999999875433222                                                          


Q ss_pred             hhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhh
Q 006173          273 KQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQ  352 (658)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  352 (658)
                                                                                                    +|
T Consensus       168 ------------------------------------------------------------------------------~d  169 (229)
T d1ixva_         168 ------------------------------------------------------------------------------QD  169 (229)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          34


Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      .+|+||||+|+.+|+.+++++|+++. +..++.+|.+|+||||+|+.   .+++++|++.|+
T Consensus       170 ~~g~TpLh~A~~~~~~~~v~~Ll~~~-gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         170 KQGWTPLFHALAEGHGDAAVLLVEKY-GAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHH-CCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             cccCCchhhhcccccHHHHHHHHHhc-CCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            45889999999999999999999875 45577889999999999984   589999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=6.4e-31  Score=262.77  Aligned_cols=255  Identities=13%  Similarity=0.100  Sum_probs=193.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCC------ccccccccCCCCCh
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVP------RNCLQNFARDEGSE  109 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~------~~~l~~~~d~~G~T  109 (658)
                      +|||.++..+..+.++++| .+..  ++...+.+|+|||| +||..|+.++|+.|+.+..      ..+++.+ |.+|+|
T Consensus         2 ~p~~~~~~~~~~~~~~~~l-~~~~--~n~~~~~~g~T~Lh-~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-d~~G~T   76 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPI-TRES--VNIIDPRHNRTVLH-WIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENT   76 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCC-STTT--TTTCCCSSCCCHHH-HHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCC
T ss_pred             ChHHHHHHhCCCHHHHHHH-HhcC--CCcCCCCCCccHHH-HHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-CCCCCe
Confidence            5777666666666666666 3322  33332457999999 9999999999999875421      1247888 999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC----CCCCCCcc
Q 006173          110 YMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR----EPLDGRQG  185 (658)
Q Consensus       110 pLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~~g  185 (658)
                      |||+|+..|+.++|++|+++|+++ +.++.           . |.||||+|+..|+.++++++.....    ....+..+
T Consensus        77 pLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~-----------~-g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (277)
T d2fo1e1          77 PLMLAVLARRRRLVAYLMKAGADP-TIYNK-----------S-ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  143 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-----------T-CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             eecccccccccccccccccccccc-ccccc-----------c-ccccccchhhhcchhhhhhhhhccccccccccccccc
Confidence            999999999999999999999885 55555           6 9999999999999999999988764    35678888


Q ss_pred             hhHHHHHHhcCcHH---HHHHHHHhCC-------CccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhccccccccc
Q 006173          186 FVLLKFLIDSNLFD---MALALLKCHP-------MIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEE  255 (658)
Q Consensus       186 ~t~Lh~A~~~g~~~---iv~~LL~~~~-------~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~  255 (658)
                      .++.+.+...+..+   .+..+.+...       ......+..|.||||+++..++.                       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~-----------------------  200 (277)
T d2fo1e1         144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM-----------------------  200 (277)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH-----------------------
T ss_pred             chhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccc-----------------------
Confidence            99999998877544   4444444422       12234567799999999887522                       


Q ss_pred             CCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHH
Q 006173          256 YNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILR  335 (658)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  335 (658)
                                                                                                  +...
T Consensus       201 ----------------------------------------------------------------------------~~~~  204 (277)
T d2fo1e1         201 ----------------------------------------------------------------------------PIVK  204 (277)
T ss_dssp             ----------------------------------------------------------------------------HHHH
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0000


Q ss_pred             HHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcC
Q 006173          336 IMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       336 ~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                      .+..   ....+...+|..|+||||+|++.|+.++|++|++++ ++ ++.+|.+|+||||+|+++|+.++|++|++.
T Consensus       205 ~~l~---~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-ad-in~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         205 YLVG---EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-AS-VEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHH---HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cccc---cccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc-CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            0000   112233446788999999999999999999999999 76 577899999999999999999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=236.21  Aligned_cols=82  Identities=9%  Similarity=-0.035  Sum_probs=74.2

Q ss_pred             hcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchh
Q 006173          352 QNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINIL  431 (658)
Q Consensus       352 ~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpL  431 (658)
                      +..|.+|||.|+..+..++++.+++.+ .. ...+|..|+||||+|+.+|+.+++++|++.|+    ++|.+|.+|+|||
T Consensus       141 ~~~~~~~l~~a~~~~~~~~~~~~~~~~-~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga----d~n~~d~~G~TpL  214 (228)
T d1k1aa_         141 IKSGRSPLIHAVENNSLSMVQLLLQHG-AN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPL  214 (228)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCTT
T ss_pred             ccchhhHHHHHHHhhhhhhhhhhhhhc-cc-cccccccCcchHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHH
Confidence            345789999999999999999999988 54 56679999999999999999999999999998    7899999999999


Q ss_pred             hhHhhcCC
Q 006173          432 HIAAMSVP  439 (658)
Q Consensus       432 HlAa~~g~  439 (658)
                      |+|++.|+
T Consensus       215 ~~A~~~~~  222 (228)
T d1k1aa_         215 MVARSRRV  222 (228)
T ss_dssp             TTCSSHHH
T ss_pred             HHHHhCCC
Confidence            99998876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.9e-28  Score=240.39  Aligned_cols=248  Identities=14%  Similarity=0.111  Sum_probs=198.0

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      +++|+|| .|++.|+.++|++|++.| .+ ++.+.+..|+||||+|+..|+.+++++|++.++..... ..         
T Consensus         4 ~~~~~L~-~Ai~~~~~e~vk~Ll~~G-~d-in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~-~~---------   70 (285)
T d1wdya_           4 EDNHLLI-KAVQNEDVDLVQQLLEGG-AN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KK---------   70 (285)
T ss_dssp             HHHHHHH-HHHHTTCHHHHHHHHHTT-CC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CT---------
T ss_pred             CCcHHHH-HHHHcCCHHHHHHHHHCC-CC-cCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccccc-cc---------
Confidence            3579999 999999999999999995 44 65552568999999999999999999999998876333 33         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCc---------cccccCC
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMI---------ARADIGE  218 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~---------~~~~d~~  218 (658)
                        . +.+|.+.|+..+..+...++++...+ ...+..|.++++.|+..++...+..++......         ....+..
T Consensus        71 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (285)
T d1wdya_          71 --N-GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG  147 (285)
T ss_dssp             --T-CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred             --c-cchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhccc
Confidence              4 89999999999999999999998774 567888999999999999999999988764432         2244667


Q ss_pred             CCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchh
Q 006173          219 TGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSL  298 (658)
Q Consensus       219 g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (658)
                      |.||||+|+++++.                                                                  
T Consensus       148 g~t~L~~A~~~~~~------------------------------------------------------------------  161 (285)
T d1wdya_         148 GATALMDAAEKGHV------------------------------------------------------------------  161 (285)
T ss_dssp             CCCHHHHHHHHTCH------------------------------------------------------------------
T ss_pred             CchHHHHHHHcCCH------------------------------------------------------------------
Confidence            99999999988522                                                                  


Q ss_pred             HHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHH----hCcHHHHHHH
Q 006173          299 RQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAAR----LGIYEIVMGI  374 (658)
Q Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~----~G~~~~v~~L  374 (658)
                                                       +.++.+++.   ...+.+..+..|.++++.+..    .+..++++.|
T Consensus       162 ---------------------------------~~~~~Ll~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L  205 (285)
T d1wdya_         162 ---------------------------------EVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLL  205 (285)
T ss_dssp             ---------------------------------HHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH
T ss_pred             ---------------------------------HHHHHHHhc---cCCCcccccCCCCcccccccccccchHHHHHHHHH
Confidence                                             111222211   112223456677787776544    3456799999


Q ss_pred             HhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcC-CCcccccccccccCCCchhhhHhhcCCC
Q 006173          375 MNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNF-PNIYPFFMANIDEKRINILHIAAMSVPS  440 (658)
Q Consensus       375 l~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~in~~D~~G~TpLHlAa~~g~~  440 (658)
                      ++++ .+ ++.+|..|+||||+|+..|+.+++++|++. |.    ++|.+|.+|+||||+|++.|+.
T Consensus       206 i~~g-a~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~----din~~d~~G~TpL~~A~~~~~~  266 (285)
T d1wdya_         206 LDHG-AD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             HHTT-CC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHCC-CC-CCccCCCCCCccchhhhcCcHHHHHHHHHcCCC----CCcCCCCCCCCHHHHHHHcCCH
Confidence            9998 66 567899999999999999999999999986 54    7899999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-28  Score=236.50  Aligned_cols=83  Identities=8%  Similarity=0.004  Sum_probs=74.4

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhh
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILH  432 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLH  432 (658)
                      ..|.||||.|+..|+.++++.|+..+ +......+.+|+||||+|++.|+.+++++|++.|+    ++|.+|.+|+||||
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~ga----d~~~~~~~G~tpl~  183 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPYQ  183 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTTCCCGGG
T ss_pred             cccchhhhHHhhcCChhheeeecccC-cccccccccCCCCccccccccccHHHHHHHHhcCC----cccccCCCCCCHHH
Confidence            34789999999999999999999998 77666667789999999999999999999999988    78999999999999


Q ss_pred             hHhhcCCC
Q 006173          433 IAAMSVPS  440 (658)
Q Consensus       433 lAa~~g~~  440 (658)
                      +|++.++.
T Consensus       184 ~A~~~~~~  191 (221)
T d1iknd_         184 LTWGRPST  191 (221)
T ss_dssp             GCTTSSCH
T ss_pred             HHHHCCCH
Confidence            99998873

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=4.3e-28  Score=244.10  Aligned_cols=246  Identities=14%  Similarity=0.101  Sum_probs=184.5

Q ss_pred             hhhhhHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChH
Q 006173           31 DIDSYKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEY  110 (658)
Q Consensus        31 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~Tp  110 (658)
                      ++.+.++|+.||..||.+.|+.|| +. +.+++.+ |.+|+|||| +|+..|+.++|++|++++. + .... +..+.||
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll-~~-Gadvn~~-d~~G~T~L~-~A~~~g~~eiv~~Ll~~~~-~-~~~~-~~~~~~~  109 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLL-ER-GADINYA-NVDGLTALH-QACIDDNVDMVKFLVENGA-N-INQP-DNEGWIP  109 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHH-HH-CCCTTCB-CTTCCBHHH-HHHHTTCHHHHHHHHHTTC-C-TTCC-CTTSCCH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHH-HC-CCCCCcc-CCCCCcHHH-HHHhcCCceeeeeeccccc-c-cccc-ccccccc
Confidence            355779999999999999999999 54 3446555 889999999 9999999999999999953 3 5566 8889999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC--CCCCcchhH
Q 006173          111 MEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP--LDGRQGFVL  188 (658)
Q Consensus       111 Lh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~g~t~  188 (658)
                      ||+|+..|+.++++.|++.+... ...+.           . |.||+++|+..++.+.++.++......  .....+..+
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~-~~~~~-----------~-~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  176 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHV-GAVNS-----------E-GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI  176 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             ccccccccccchhhcccccCccc-ccccc-----------c-Cccccccccccccchhcccccccccccccccccccccc
Confidence            99999999999999999998764 44455           5 999999999999999999998765421  011111111


Q ss_pred             HHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCC
Q 006173          189 LKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVG  268 (658)
Q Consensus       189 Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  268 (658)
                      .+        ......+..........+.+|.||||.|+..++.                                    
T Consensus       177 ~~--------~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~------------------------------------  212 (291)
T d1s70b_         177 ML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT------------------------------------  212 (291)
T ss_dssp             HH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH------------------------------------
T ss_pred             cc--------ccchhhhcccccccccccCCCCChhhHHHHcCCh------------------------------------
Confidence            11        1122233333444456677899999998887522                                    


Q ss_pred             CchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcch
Q 006173          269 GDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTH  348 (658)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  348 (658)
                                                                                     ++++.++.    ...+.
T Consensus       213 ---------------------------------------------------------------~~~~~Ll~----~g~di  225 (291)
T d1s70b_         213 ---------------------------------------------------------------EVLKLLIQ----ARYDV  225 (291)
T ss_dssp             ---------------------------------------------------------------HHHHHHHT----TTCCT
T ss_pred             ---------------------------------------------------------------hhhccccc----ceecc
Confidence                                                                           12222222    22333


Q ss_pred             hhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCC
Q 006173          349 EEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFP  413 (658)
Q Consensus       349 ~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  413 (658)
                      +.++..|+||||+|+..|+.++|++|++++ ++ ++.+|++|+||||+|++    +++++|.+..
T Consensus       226 n~~~~~g~TpL~~A~~~g~~~iv~lLl~~G-ad-v~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         226 NIKDYDGWTPLHAAAHWGKEEACRILVENL-CD-MEAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCC-CC-CCCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence            456778999999999999999999999999 76 57789999999999975    6777777653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-28  Score=233.72  Aligned_cols=193  Identities=12%  Similarity=0.124  Sum_probs=155.4

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCC--ccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCC
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVP--RNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNI  146 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~--~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~  146 (658)
                      +|+|||| +|+..|+.++++.|++...  ...++.+ |.+|+||||+||..|+.+++++|++.+++. ...+.       
T Consensus         1 dG~t~Lh-~A~~~g~~~~~~~li~~~~~~~~~in~~-d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~-------   70 (221)
T d1iknd_           1 DGDSFLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF-------   70 (221)
T ss_dssp             CCCCTTH-HHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT-------
T ss_pred             CCChHHH-HHHHcCCHHHHHHHHHHHHhCCCCcccC-CCCCCccccccccccccccccccccccccc-ccccc-------
Confidence            5899999 9999999766666655431  2348888 999999999999999999999999988875 44555       


Q ss_pred             cccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-------CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCC
Q 006173          147 KDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-------PLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGET  219 (658)
Q Consensus       147 ~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-------~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g  219 (658)
                          . |.||||+|+..|+.++++.|++.+..       ......|.||||.|+..++.+++..|+..+.....      
T Consensus        71 ----~-g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~------  139 (221)
T d1iknd_          71 ----R-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA------  139 (221)
T ss_dssp             ----T-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC------
T ss_pred             ----c-cccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccc------
Confidence                6 99999999999999999999987662       24455577888888888888877777765432210      


Q ss_pred             CcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhH
Q 006173          220 GKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLR  299 (658)
Q Consensus       220 ~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (658)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (221)
T d1iknd_         140 --------------------------------------------------------------------------------  139 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcC
Q 006173          300 QKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYF  379 (658)
Q Consensus       300 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~  379 (658)
                                                                        ..+.+|.||||+|++.|+.+++++|++++ 
T Consensus       140 --------------------------------------------------~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-  168 (221)
T d1iknd_         140 --------------------------------------------------QEPCNGRTALHLAVDLQNPDLVSLLLKCG-  168 (221)
T ss_dssp             --------------------------------------------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTT-
T ss_pred             --------------------------------------------------ccccCCCCccccccccccHHHHHHHHhcC-
Confidence                                                              02345889999999999999999999999 


Q ss_pred             CCcccccccCCChHHHHHHHhCCHhHHHHHhcCCC
Q 006173          380 PWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPN  414 (658)
Q Consensus       380 ~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~  414 (658)
                      .+ ++.+|.+|+||||+|++.++.+++++|++...
T Consensus       169 ad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         169 AD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             CC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             Cc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            76 67789999999999999999999999999865

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.2e-28  Score=254.28  Aligned_cols=127  Identities=14%  Similarity=0.176  Sum_probs=102.1

Q ss_pred             cCCCCcHHHHhhhcCCChHHHHH---HHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCccc-ccCCC
Q 006173           67 VDQSSIFEFIVGIPDVPATLVDK---LLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIK-VEKKD  142 (658)
Q Consensus        67 ~~~g~T~Lh~~Aa~~g~~~iv~~---Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~-~~~~~  142 (658)
                      +..|.|||| +||..||.++++.   |++. +. .++.. |.+|+||||+||..||.++|++|++.++++.... ..   
T Consensus        87 ~~~~~t~L~-~Aa~~g~~~~~~~~~~L~~~-~~-~in~~-~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~---  159 (346)
T d2ajaa1          87 GIKSEVICF-VAAITGCSSALDTLCLLLTS-DE-IVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA---  159 (346)
T ss_dssp             TCCHHHHHH-HHHHHCCHHHHHHHTTC--C-CS-SCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH---
T ss_pred             cCCCCcHHH-HHHHhCCHHHHHHHHHHHhC-CC-ccccc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccc---
Confidence            668899999 9999999887776   5555 33 37888 9999999999999999999999999998864332 23   


Q ss_pred             CCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCC----CCCCcchhHHHHHHhcCcHHHHHHHHHhCC
Q 006173          143 DPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREP----LDGRQGFVLLKFLIDSNLFDMALALLKCHP  209 (658)
Q Consensus       143 d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~----~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~  209 (658)
                              + |+||||+||..||.++|++|++.++..    ..+.+|.||+|.|+.+|+.+++++|++.+.
T Consensus       160 --------~-g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         160 --------E-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             --------H-HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             --------C-CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCC
Confidence                    4 899999999999999999999998742    345667888889999999999999998643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2.6e-28  Score=251.69  Aligned_cols=58  Identities=3%  Similarity=0.088  Sum_probs=40.4

Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhhcCCCc----ccccccCCChHHHHHHHhCCHhHHHHHhcC
Q 006173          354 VFKKPMFKAARLGIYEIVMGIMNSYFPWS----LEFKNKDGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       354 ~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~----~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                      .+.++++.|+..|+.+++++|++.+ ...    ...++.+|+||||+|++.|+.++|++|++.
T Consensus       278 ~~~~~l~~a~~~~~ld~v~~Ll~~~-~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         278 YMLRNLIRRNDEVLLDDIRFLLSIP-GIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHCCGGGHHHHHHHHTST-TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhhhHHHHHhcCChHHHHHHHHhCc-ChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            3557777777788888888887765 421    222345677888888888888888888776

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-25  Score=211.75  Aligned_cols=220  Identities=13%  Similarity=0.100  Sum_probs=179.6

Q ss_pred             CCCCcHHHHhhhcCCChHHHHHHHhcC--CccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCC
Q 006173           68 DQSSIFEFIVGIPDVPATLVDKLLSKV--PRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPN  145 (658)
Q Consensus        68 ~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~--~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~  145 (658)
                      ++|+|||| .||..|+.++|+.|++..  ....++.. |..|+||||+||..|+.+++++|++.+++.. ....      
T Consensus         1 ~dG~TpLh-~A~~~g~~~~v~~Ll~~~~~~g~~in~~-d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~------   71 (228)
T d1k1aa_           1 EDGDTPLH-IAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDR------   71 (228)
T ss_dssp             CTTCCHHH-HHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT------
T ss_pred             CCCccHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCcc-CCCCCccceehhccccccccccccccccccc-cccc------
Confidence            37999999 999999999999998642  11247888 9999999999999999999999999998864 4444      


Q ss_pred             CcccCCCCCcHHHHHHHhCcHHHHHHhccCCC-----CCCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCC
Q 006173          146 IKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR-----EPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETG  220 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~-----~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~  220 (658)
                           . |.++++.|...++.++++.+.....     .........++||.+...........|...........+..|.
T Consensus        72 -----~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (228)
T d1k1aa_          72 -----H-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR  145 (228)
T ss_dssp             -----T-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCC
T ss_pred             -----c-cccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchh
Confidence                 4 9999999999999999888766544     2456677889999999999999999999888777777788899


Q ss_pred             cHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHH
Q 006173          221 KILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQ  300 (658)
Q Consensus       221 TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (658)
                      +||+.|+..+..                                                                    
T Consensus       146 ~~l~~a~~~~~~--------------------------------------------------------------------  157 (228)
T d1k1aa_         146 SPLIHAVENNSL--------------------------------------------------------------------  157 (228)
T ss_dssp             CHHHHHHHTTCH--------------------------------------------------------------------
T ss_pred             hHHHHHHHhhhh--------------------------------------------------------------------
Confidence            999999987421                                                                    


Q ss_pred             HHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCC
Q 006173          301 KLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFP  380 (658)
Q Consensus       301 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~  380 (658)
                                                     ...+.+.    ........+|..|.||||+|+..|+.+++++|++++ .
T Consensus       158 -------------------------------~~~~~~~----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-a  201 (228)
T d1k1aa_         158 -------------------------------SMVQLLL----QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-A  201 (228)
T ss_dssp             -------------------------------HHHHHHH----HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-C
T ss_pred             -------------------------------hhhhhhh----hhccccccccccCcchHHHHHHcCCHHHHHHHHHCC-C
Confidence                                           0111111    112233446788999999999999999999999999 7


Q ss_pred             CcccccccCCChHHHHHHHhCCHhHHH
Q 006173          381 WSLEFKNKDGYDIFKVAVEHRREKVFN  407 (658)
Q Consensus       381 ~~~~~~d~~G~T~Lh~A~~~~~~~iv~  407 (658)
                      + ++.+|.+|+||||+|+++|+.++|+
T Consensus       202 d-~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         202 D-SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             C-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             C-CCCCCCCCCCHHHHHHhCCCccccC
Confidence            6 6778999999999999999998874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=8.7e-25  Score=208.20  Aligned_cols=204  Identities=17%  Similarity=0.190  Sum_probs=127.9

Q ss_pred             hHHHHHHHhcCCcccccc-ccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHH
Q 006173           84 ATLVDKLLSKVPRNCLQN-FARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAK  162 (658)
Q Consensus        84 ~~iv~~Ll~~~~~~~l~~-~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~  162 (658)
                      .|+|+.|+++ +.+ ++. . |.+|+||||+||+.|+.+++++|++.++++ +.++.           . +.||++.++.
T Consensus         2 ~~~v~~Ll~~-g~d-in~~~-d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~-----------~-~~~~~~~~~~   65 (209)
T d1ot8a_           2 AQVISDLLAQ-GAE-LNATM-DKTGETSLHLAARFARADAAKRLLDAGADA-NSQDN-----------T-GRTPLHAAVA   65 (209)
T ss_dssp             HHHHHHHHHH-HHH-HHHHH-HHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHH
T ss_pred             HHHHHHHHHC-CCC-cCcCc-CCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccc-----------c-cccccccccc
Confidence            3677777777 333 544 4 677777777777777777777777777765 33444           4 7777777777


Q ss_pred             hCcHHHHHHhccCCC--CCCCCCcchhHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcc
Q 006173          163 AGKRDAVRHLLPKTR--EPLDGRQGFVLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLG  240 (658)
Q Consensus       163 ~g~~~iv~~Ll~~~~--~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~  240 (658)
                      .++............  .......|.++.+.+.......+.+.|..... ..+.++..|.|||+.++..+..        
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~~~~t~l~~~~~~~~~--------  136 (209)
T d1ot8a_          66 ADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA-DINAADNSGKTALHWAAAVNNT--------  136 (209)
T ss_dssp             TTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCH--------
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc-cccccCCCCCCcchhhcccCcc--------
Confidence            777665555555444  23455566777777777776666666665432 3344555566666655555311        


Q ss_pred             hhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHH
Q 006173          241 SWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSI  320 (658)
Q Consensus       241 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (658)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (209)
T d1ot8a_         137 --------------------------------------------------------------------------------  136 (209)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHh
Q 006173          321 RDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEH  400 (658)
Q Consensus       321 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~  400 (658)
                                 +.+..+.    ....+.+.+|..|.||||+||..|+.++++.|++++ ++ ++.+|.+|+||||+|+++
T Consensus       137 -----------~~~~~l~----~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-ad-~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         137 -----------EAVNILL----MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF-AN-REITDHMDRLPRDVASER  199 (209)
T ss_dssp             -----------HHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHT
T ss_pred             -----------eeeeeec----cccccccccccccccccchhccccHHHHHHHHHHCC-CC-CCCcCCCCCCHHHHHHHc
Confidence                       0001111    111122234566778888888888888888888777 65 456677788888888888


Q ss_pred             CCHhHHHHH
Q 006173          401 RREKVFNII  409 (658)
Q Consensus       401 ~~~~iv~~L  409 (658)
                      |+.+||++|
T Consensus       200 ~~~~iv~lL  208 (209)
T d1ot8a_         200 LHHDIVRLL  208 (209)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHhhc
Confidence            888887765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=4.3e-25  Score=210.34  Aligned_cols=200  Identities=14%  Similarity=0.072  Sum_probs=161.3

Q ss_pred             HHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcH
Q 006173          120 LNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLF  198 (658)
Q Consensus       120 ~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~  198 (658)
                      .|+|++|+++|+++....+.           + |.||||+||..|+.+++++|++.++. +.++..+.++++.++..++.
T Consensus         2 ~~~v~~Ll~~g~din~~~d~-----------~-G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~   69 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDK-----------T-GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAM   69 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----------H-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCCcCcCcCC-----------C-CCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccc
Confidence            58999999999997444566           6 99999999999999999999999985 67899999999999999988


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhh
Q 006173          199 DMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVT  278 (658)
Q Consensus       199 ~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (658)
                      +...................|.++.+.+......                                              
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  103 (209)
T d1ot8a_          70 GVFQILLRNRATNLNARMHDGTTPLILAARLAIE----------------------------------------------  103 (209)
T ss_dssp             HHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCT----------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccch----------------------------------------------
Confidence            8777776665555455556677777755444211                                              


Q ss_pred             HHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcH
Q 006173          279 SKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKP  358 (658)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tp  358 (658)
                                                                           ...+.+.    ....+.+.++..|.||
T Consensus       104 -----------------------------------------------------~~~~~L~----~~~~~~~~~~~~~~t~  126 (209)
T d1ot8a_         104 -----------------------------------------------------GMVEDLI----TADADINAADNSGKTA  126 (209)
T ss_dssp             -----------------------------------------------------THHHHHH----HTTCCTTCBCTTSCBH
T ss_pred             -----------------------------------------------------hhhhhhh----hhcccccccCCCCCCc
Confidence                                                                 0000111    1122223467789999


Q ss_pred             HHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCchhhhHhhcC
Q 006173          359 MFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINILHIAAMSV  438 (658)
Q Consensus       359 Lh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~TpLHlAa~~g  438 (658)
                      ||.|+..|..++++.+++.+ .+ ++.+|..|.||||+|+..|+.+++++|++.|+    ++|.+|.+|+||||+|++.|
T Consensus       127 l~~~~~~~~~~~~~~l~~~~-~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga----d~n~~d~~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         127 LHWAAAVNNTEAVNILLMHH-AN-RDAQDDKDETPLFLAAREGSYEASKALLDNFA----NREITDHMDRLPRDVASERL  200 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTT
T ss_pred             chhhcccCcceeeeeecccc-cc-ccccccccccccchhccccHHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999998 65 56779999999999999999999999999998    78999999999999999999


Q ss_pred             CC
Q 006173          439 PS  440 (658)
Q Consensus       439 ~~  440 (658)
                      +.
T Consensus       201 ~~  202 (209)
T d1ot8a_         201 HH  202 (209)
T ss_dssp             CH
T ss_pred             CH
Confidence            84

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4e-24  Score=193.70  Aligned_cols=152  Identities=14%  Similarity=0.162  Sum_probs=134.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      .+|+.||..||++.|+.+| +..+..++.+ |..|+|||| +|+. |+.++|++|++.+ .+ ++.. +..|.+||++|+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL-~~~~~~~n~~-d~~g~t~L~-~A~~-~~~~~v~~Ll~~~-~~-~~~~-~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLL-HRELVHPDAL-NRFGKTALQ-VMMF-GSTAIALELLKQG-AS-PNVQ-DTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHH-HTTCCCTTCC-CTTSCCHHH-HSCT-TCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHH-HhCCCCCCcc-CCCCCcccc-cccc-ccccccccccccc-cc-cccc-cccccccccccc
Confidence            5699999999999999999 6666666655 889999999 8875 8999999999984 33 7788 999999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCCCCCCCcchhHHHHHHhc
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTREPLDGRQGFVLLKFLIDS  195 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~g~t~Lh~A~~~  195 (658)
                      ..++.++++.+++.++++ +.++.           . |+||||+||..|+.+++++|+.......+|.+|.||||+|+..
T Consensus        77 ~~~~~~~~~~~l~~~~~~-n~~~~-----------~-~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADV-NVPDG-----------T-GALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS-CCCCT-----------T-SCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHS
T ss_pred             cccccccccccccccccc-ccccC-----------C-CCeeeccccccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            999999999999999875 44555           6 9999999999999999999986544577899999999999999


Q ss_pred             CcHHHHHHHHHh
Q 006173          196 NLFDMALALLKC  207 (658)
Q Consensus       196 g~~~iv~~LL~~  207 (658)
                      |+.+++++|+++
T Consensus       144 g~~~iv~~Ll~h  155 (156)
T d1bd8a_         144 GAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=190.04  Aligned_cols=153  Identities=19%  Similarity=0.251  Sum_probs=131.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchh
Q 006173          109 EYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFV  187 (658)
Q Consensus       109 TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t  187 (658)
                      +|||+||..|+.++|+.|+++|+++ +..+.           . |.||||+|+ .|+.+++++|++++++ ...+..|.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~-----------~-g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~   68 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNG-----------F-GRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFA   68 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT-----------T-SCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCC-----------c-ccccccccc-cccccccccccccccccccccccCcc
Confidence            8999999999999999999998885 55555           6 999999886 7899999999999885 577888899


Q ss_pred             HHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCC
Q 006173          188 LLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSENV  267 (658)
Q Consensus       188 ~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  267 (658)
                      +++.++..++.+.+..|++.....                                                        
T Consensus        69 ~l~~~~~~~~~~~~~~l~~~~~~~--------------------------------------------------------   92 (156)
T d1ihba_          69 VIHDAARAGFLDTLQTLLEFQADV--------------------------------------------------------   92 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT--------------------------------------------------------
T ss_pred             cccccccccccccccccccccccc--------------------------------------------------------
Confidence            999999999999888888764321                                                        


Q ss_pred             CCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhcc
Q 006173          268 GGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILNT  347 (658)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  347 (658)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (156)
T d1ihba_          93 --------------------------------------------------------------------------------   92 (156)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCC
Q 006173          348 HEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFP  413 (658)
Q Consensus       348 ~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~  413 (658)
                       +..+..|.+|||+|+..|+.++++.|++++ +.....+|.+|+||||+|++.++.+++++|+++|
T Consensus        93 -~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          93 -NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             -cccccccccccccccccccccccccccccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence             012345789999999999999999999999 8778889999999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.7e-23  Score=184.98  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=135.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      ++||.||..||.+.|+.|+ + ++.+++.+ |.+|.|||| +|+ .|+.+++++|++.+ .+ ++.. +..|.|||+.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll-~-~g~d~n~~-d~~g~TpL~-~A~-~~~~ei~~~Ll~~~-a~-~~~~-~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLL-Q-NNVNVNAQ-NGFGRTALQ-VMK-LGNPEIARRLLLRG-AN-PDLK-DRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHT-T-SCCCTTCC-CTTSCCHHH-HCC-SSCHHHHHHHHHTT-CC-TTCC-CTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHH-H-CCCCcCcc-CCccccccc-ccc-cccccccccccccc-cc-cccc-cccCcccccccc
Confidence            7899999999999999999 4 44556655 899999999 887 68999999999994 33 7788 999999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC--CCCCCCcchhHHHHHH
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR--EPLDGRQGFVLLKFLI  193 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~--~~~~~~~g~t~Lh~A~  193 (658)
                      ..|+.+.++.|+..+.+. ...+.           . |.+|||+|+..|+.+++++|+++++  ...+|.+|.||||+|+
T Consensus        75 ~~~~~~~~~~l~~~~~~~-~~~~~-----------~-~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~  141 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQADV-NIEDN-----------E-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR  141 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccc-ccccc-----------c-cccccccccccccccccccccccccccccccCCCCCCHHHHHH
Confidence            999999999999998875 44455           6 9999999999999999999999987  3678999999999999


Q ss_pred             hcCcHHHHHHHHHhC
Q 006173          194 DSNLFDMALALLKCH  208 (658)
Q Consensus       194 ~~g~~~iv~~LL~~~  208 (658)
                      ..++.+++++|++++
T Consensus       142 ~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         142 LYGRNEVVSLMQANG  156 (156)
T ss_dssp             HTTCHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHhcC
Confidence            999999999999863

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.1e-22  Score=180.28  Aligned_cols=149  Identities=15%  Similarity=0.126  Sum_probs=106.8

Q ss_pred             ChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC-CCCCCCcch
Q 006173          108 SEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR-EPLDGRQGF  186 (658)
Q Consensus       108 ~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~g~  186 (658)
                      .||||.||+.|+.++|++|+++++++.  .+.           . |+||||+|+..++.++++.++.... ....+..+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~-----------~-g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDW-----------L-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCT-----------T-CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--ccc-----------C-CCccccccccccccccccccccccccccccccccc
Confidence            377777777778888887777777642  344           4 7778877777777777777777666 345555666


Q ss_pred             hHHHHHHhcCcHHHHHHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCC
Q 006173          187 VLLKFLIDSNLFDMALALLKCHPMIARADIGETGKILESLSKRPKAFASGSRLGSWKRLLYQWIPIQEEYNPHPHPPSEN  266 (658)
Q Consensus       187 t~Lh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  266 (658)
                      ++++.++...+.++++.++....+.                                                       
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------------------------------   93 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHGADV-------------------------------------------------------   93 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCT-------------------------------------------------------
T ss_pred             cccccccccccceeeecccccCCcc-------------------------------------------------------
Confidence            7777777777777776665542211                                                       


Q ss_pred             CCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHHHHHhhhhhHHHHHHHHHHHHhhhhhhc
Q 006173          267 VGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKSIRDAKIIHEQTLEILRIMCAGAVDILN  346 (658)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  346 (658)
                                                                                                      
T Consensus        94 --------------------------------------------------------------------------------   93 (153)
T d1awcb_          94 --------------------------------------------------------------------------------   93 (153)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHH
Q 006173          347 THEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNII  409 (658)
Q Consensus       347 ~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  409 (658)
                        ..+|..|+||||+|+..|+.+++++|++.+ .+ ++.+|.+|+||||+|+.+|+.+++++|
T Consensus        94 --~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          94 --NAKDMLKMTALHWATEHNHQEVVELLIKYG-AD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             --TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --ccccccCchHHHhhhhcchhheeeeccccc-cC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence              113455778888888888888888888887 65 456788888888888888888888876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.3e-23  Score=207.54  Aligned_cols=78  Identities=8%  Similarity=0.019  Sum_probs=49.9

Q ss_pred             cCCCcHHHHHHHhCcHHHHHHHHh--hcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcCCCcccccccccccCCCch
Q 006173          353 NVFKKPMFKAARLGIYEIVMGIMN--SYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNFPNIYPFFMANIDEKRINI  430 (658)
Q Consensus       353 ~~g~tpLh~Aa~~G~~~~v~~Ll~--~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~in~~D~~G~Tp  430 (658)
                      ..+.++++.+........++.+..  .. ...++.+|.+|+||||+|+++|+.++|++|++.|+    +++.+|++|+||
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA----d~~~~n~~G~Tp  295 (301)
T d1sw6a_         221 NEKESKPNDKNGERKDSILENLDLKWII-ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA----DPFIANKSGLRP  295 (301)
T ss_dssp             ---------------CHHHHHCSHHHHH-HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC----CTTCCCTTSCCG
T ss_pred             ccccchhHHHHhcchHHHHHHHhhHHHH-hcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCH
Confidence            345566666655544443332211  11 12256689999999999999999999999999999    789999999999


Q ss_pred             hhhHh
Q 006173          431 LHIAA  435 (658)
Q Consensus       431 LHlAa  435 (658)
                      ||+|+
T Consensus       296 l~~A~  300 (301)
T d1sw6a_         296 VDFGA  300 (301)
T ss_dssp             GGGTC
T ss_pred             HHHcC
Confidence            99997

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.9e-22  Score=178.95  Aligned_cols=149  Identities=13%  Similarity=0.072  Sum_probs=129.6

Q ss_pred             hHHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHH
Q 006173           35 YKQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYA  114 (658)
Q Consensus        35 ~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~A  114 (658)
                      .|||+.||+.|+.+.|+.|| +... ..+  .+..|+|||| +|+..++.++++.++... .. .... +..+.++++.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL-~~ga-~~~--~~~~g~t~L~-~a~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILM-ANGA-PFT--TDWLGTSPLH-LAAQYGHFSTTEVLLRAG-VS-RDAR-TKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHH-HHTC-CCC--CCTTCCCHHH-HHHHHTCHHHHHHHHTTT-CC-TTCC-CTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHH-HcCC-Ccc--cccCCCcccc-cccccccccccccccccc-cc-cccc-ccccccccccc
Confidence            48999999999999999999 5543 332  3889999999 999999999999999883 33 3445 77889999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHH
Q 006173          115 VSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLI  193 (658)
Q Consensus       115 a~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~  193 (658)
                      +...+.++++++...+.+. ...+.           . |.||||+|+..|+.++|++|++++++ ..+|.+|.||||+|+
T Consensus        75 ~~~~~~~~~~~l~~~~~~~-~~~~~-----------~-g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~  141 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGADV-NAKDM-----------L-KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI  141 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccceeeecccccCCcc-ccccc-----------c-CchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHH
Confidence            9999999999999988875 44455           6 99999999999999999999999995 578999999999999


Q ss_pred             hcCcHHHHHHH
Q 006173          194 DSNLFDMALAL  204 (658)
Q Consensus       194 ~~g~~~iv~~L  204 (658)
                      .+|+.|++++|
T Consensus       142 ~~g~~eiv~lL  152 (153)
T d1awcb_         142 DNGNEDLAEIL  152 (153)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHhC
Confidence            99999999765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.1e-22  Score=181.04  Aligned_cols=55  Identities=15%  Similarity=0.181  Sum_probs=31.4

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHHHhCCHhHHHHHhcC
Q 006173          355 FKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAVEHRREKVFNIIFNF  412 (658)
Q Consensus       355 g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  412 (658)
                      |.||||+||+.|+.+++++|+ .+ .+ ++.+|.+|+||||+|++.|+.+++++|+++
T Consensus       101 ~~t~L~~A~~~~~~~i~~~L~-~~-~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         101 GALPIHLAVQEGHTAVVSFLA-AE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHH-TT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCeeecccccccccccccccc-cc-cc-ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            555666666666666665554 23 22 344566666666666666666666666543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4e-22  Score=201.05  Aligned_cols=183  Identities=16%  Similarity=0.057  Sum_probs=116.0

Q ss_pred             cccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCc-------HHHHHH
Q 006173           99 LQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGK-------RDAVRH  171 (658)
Q Consensus        99 l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~-------~~iv~~  171 (658)
                      ++...|.+|+||||+||..|+.++|++|+++|+++ ..++.           . |+||||.||..++       .+++++
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~-----------~-G~TpL~~A~~~~~~~~~~~~~~ll~~  165 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDN-----------M-GESCLVKAVKSVNNYDSGTFEALLDY  165 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT-----------T-CCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCc-----------c-cccHHHHhhhcccchhhhhHHHHHHH
Confidence            44333889999999999999999999999999986 55666           6 9999999998775       255666


Q ss_pred             hccCCCCCCCCCcchhHHHHHHhcCc----HHHH--------HHHHHhCCCccccccCCCCcHhHHHhcCCCCCCCCCCc
Q 006173          172 LLPKTREPLDGRQGFVLLKFLIDSNL----FDMA--------LALLKCHPMIARADIGETGKILESLSKRPKAFASGSRL  239 (658)
Q Consensus       172 Ll~~~~~~~~~~~g~t~Lh~A~~~g~----~~iv--------~~LL~~~~~~~~~~d~~g~TpLh~Aa~~~~~~~s~~~l  239 (658)
                      |.+..  ...|..|+||||+++..+.    .+++        ..+++............+.++++.+......       
T Consensus       166 l~~~~--~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  236 (301)
T d1sw6a_         166 LYPCL--ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD-------  236 (301)
T ss_dssp             HGGGG--GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C-------
T ss_pred             Hhhhh--hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchH-------
Confidence            55432  3567889999998875443    2222        2333333333233333344444432222100       


Q ss_pred             chhhhhhcccccccccCCCCCCCCCCCCCCchhhhhhhhHHHHHHHHHHhhCCCccchhHHHHHHHHHhhhhhhchhhHH
Q 006173          240 GSWKRLLYQWIPIQEEYNPHPHPPSENVGGDLEKQLSVTSKIQLKKFFLQKIPSAFGSLRQKLKFVLWNNLMELAPSIKS  319 (658)
Q Consensus       240 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  319 (658)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (301)
T d1sw6a_         237 --------------------------------------------------------------------------------  236 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhhhcchhhhhcCCCcHHHHHHHhCcHHHHHHHHhhcCCCcccccccCCChHHHHHH
Q 006173          320 IRDAKIIHEQTLEILRIMCAGAVDILNTHEEAQNVFKKPMFKAARLGIYEIVMGIMNSYFPWSLEFKNKDGYDIFKVAV  398 (658)
Q Consensus       320 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~tpLh~Aa~~G~~~~v~~Ll~~~~~~~~~~~d~~G~T~Lh~A~  398 (658)
                             .......+......      ..+.+|.+|+||||+||+.|+.++|++|++++ ++ ++.+|+.|+||||+|+
T Consensus       237 -------~~~~~~~~~~~~~~------~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad-~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         237 -------SILENLDLKWIIAN------MLNAQDSNGDTCLNIAARLGNISIVDALLDYG-AD-PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -------HHHHHCSHHHHHHH------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CC-TTCCCTTSCCGGGGTC
T ss_pred             -------HHHHHHhhHHHHhc------CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC-CCCCCCCCCCHHHHcC
Confidence                   00000000011111      12346888999999999999999999999999 66 6788999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.1e-22  Score=171.62  Aligned_cols=118  Identities=15%  Similarity=0.084  Sum_probs=65.4

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCC-hHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGS-EYMEYA  114 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~-TpLh~A  114 (658)
                      ++||.||..|+.+.++.|+ + ++.+++.+ +.+|.|||| +|+ .|+.++|++|++++ .+ ++.+ |..|. ||||+|
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll-~-~gad~n~~-~~~g~t~l~-~a~-~g~~~~v~~Ll~~g-a~-~~~~-~~~~~~~~L~~A   76 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALL-E-AGANPNAP-NSYGRRPIQ-VMM-MGSARVAELLLLHG-AE-PNCA-DPATLTRPVHDA   76 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHH-T-TTCCTTCC-CSSSCCTTT-SSC-TTCHHHHHHHHTTT-CC-CCCC-CTTTCCCHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHH-H-cCCccccc-ccccccccc-ccc-cccccccccccccc-cc-cccc-cccccccccccc
Confidence            4566666666666666666 3 23334333 555666666 543 45666666666653 22 4444 44443 466666


Q ss_pred             HhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcc
Q 006173          115 VSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLP  174 (658)
Q Consensus       115 a~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~  174 (658)
                      |+.|+.+++++|++.|+++ +.++.           . |+||||+|++.|+.+++++|++
T Consensus        77 ~~~g~~~~v~~Ll~~ga~~-~~~d~-----------~-G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGARL-DVRDA-----------W-GRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-SCCCT-----------T-CCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccc-ccccC-----------C-CCCHHHHHHHcCCHHHHHHHHh
Confidence            6666666666666665553 33333           4 6666666666666666666654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.4e-21  Score=165.09  Aligned_cols=117  Identities=19%  Similarity=0.096  Sum_probs=99.1

Q ss_pred             CCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcc
Q 006173           69 QSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKD  148 (658)
Q Consensus        69 ~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~  148 (658)
                      .+.++|| .||..|+.++|++|++++ .+ ++.+ |.+|.||||+|+ .|+.+++++|+++++++......         
T Consensus         2 p~~~~L~-~Aa~~G~~~~v~~Ll~~g-ad-~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~---------   67 (125)
T d1bi7b_           2 PSADWLA-TAAARGRVEEVRALLEAG-AN-PNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA---------   67 (125)
T ss_dssp             CSTTHHH-HHHHHTCHHHHHHHHTTT-CC-TTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT---------
T ss_pred             CChhHHH-HHHHCCCHHHHHHHHHcC-Cc-cccc-cccccccccccc-ccccccccccccccccccccccc---------
Confidence            3578999 999999999999999985 33 7888 999999999775 79999999999999986443333         


Q ss_pred             cCCCCCcHHHHHHHhCcHHHHHHhcc-----CCCCCCCCCcchhHHHHHHhcCcHHHHHHHHH
Q 006173          149 EEKDDLLPVHMAAKAGKRDAVRHLLP-----KTREPLDGRQGFVLLKFLIDSNLFDMALALLK  206 (658)
Q Consensus       149 ~~~~G~TpLh~Aa~~g~~~iv~~Ll~-----~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~LL~  206 (658)
                        . +.||||+|++.|+.+++++|++     ...+.    .|.||||+|+..|+.|++++|+.
T Consensus        68 --~-~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~----~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          68 --T-LTRPVHDAAREGFLDTLVVLHRAGARLDVRDA----WGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             --T-CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT----TCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             --c-cccccccccccccccccccccccccccccccC----CCCCHHHHHHHcCCHHHHHHHHh
Confidence              3 5579999999999999999975     33333    37899999999999999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=164.24  Aligned_cols=121  Identities=11%  Similarity=0.049  Sum_probs=104.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      +.|+.||..|+.+.++.++ + .+.+++.+ |.+|+|||| .||..|+.+++++|++.+ .+ ++.+ |.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll-~-~g~d~n~~-d~~g~t~Lh-~A~~~~~~~~~~~ll~~g-~~-~~~~-d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRII-Y-EVDDPSLP-NDEGITALH-NAVCAGHTEIVKFLVQFG-VN-VNAA-DSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHT-S-TTSSCCCC-CTTSCCHHH-HHHHHTCHHHHHHHHHHT-CC-TTCC-CTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHH-H-cCCCcccc-ccccccccc-cccccccccccccccccc-cc-cccc-cccCcccccccc
Confidence            6799999999999999999 4 44556655 889999999 999999999999999994 33 7888 999999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHH--HHhCcHHHHHHhccC
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMA--AKAGKRDAVRHLLPK  175 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~A--a~~g~~~iv~~Ll~~  175 (658)
                      ..|+.++|++|+++|+++....+.           . |+||++++  +..|+.+++++|++.
T Consensus        76 ~~g~~~~v~~Ll~~ga~v~~~~~~-----------~-~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAVFAMTYS-----------D-MQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCSS-----------S-CCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCCcccccCC-----------C-CCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999999999987554444           5 88887665  577899999999764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.3e-21  Score=167.67  Aligned_cols=57  Identities=14%  Similarity=0.200  Sum_probs=24.1

Q ss_pred             cHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCC
Q 006173           72 IFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEE  132 (658)
Q Consensus        72 T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~  132 (658)
                      |||+ .|++.|+.++|+.|++.+ .+ ++.. |..|+||||+|+..|+.+++++|++++++
T Consensus         4 tpL~-~A~~~g~~~~v~~Ll~~g-~d-~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~g~d   60 (118)
T d1myoa_           4 KEFM-WALKNGDLDEVKDYVAKG-ED-VNRT-LEGGRKPLHYAADCGQLEILEFLLLKGAD   60 (118)
T ss_dssp             HHHH-HHHHTTCHHHHHHHHTTT-CC-CCCC-SSSSCCTTHHHHHHSTTTHHHHHHHSSCT
T ss_pred             hHHH-HHHHCCCHHHHHHHHHhh-hc-cccc-cccccccccccccccccccccccccccce
Confidence            3444 444444444444444442 11 3333 44444444444444444444444444433

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=4.9e-21  Score=163.94  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=98.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHhhcCcccccccccCCCCcHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHH
Q 006173           36 KQVTRYILENDWKGLEDYIMSKTPNALTCIIVDQSSIFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAV  115 (658)
Q Consensus        36 ~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa  115 (658)
                      |||++|++.|+.+.++.|+ + .+.+++.+ +.+|+|||| .|+..|+.+++++|++.+ .+ ++.+ |.+|+||||+|+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll-~-~g~d~n~~-~~~g~t~lh-~A~~~~~~~~~~~ll~~g-~d-in~~-d~~g~tpLh~A~   76 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYV-A-KGEDVNRT-LEGGRKPLH-YAADCGQLEILEFLLLKG-AD-INAP-DKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-T-TTCCCCCC-SSSSCCTTH-HHHHHSTTTHHHHHHHSS-CT-TTCC-SSSCSCHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHH-H-hhhccccc-ccccccccc-cccccccccccccccccc-ce-eeec-ccccccchhhhh
Confidence            7999999999999999999 4 44556555 889999999 999999999999999994 34 7888 999999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcc
Q 006173          116 STGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLP  174 (658)
Q Consensus       116 ~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~  174 (658)
                      ..|+.+++++|+++|+++ +.++.           + |.||||+|..    +.++.|++
T Consensus        77 ~~~~~~~v~~Ll~~Gad~-~~~d~-----------~-G~t~l~~a~~----~~i~~LL~  118 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADK-TVKGP-----------D-GLTALEATDN----QAIKALLQ  118 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCS-SSSSS-----------S-TCCCCCTCSS----TTTGGGGC
T ss_pred             hcCchhhhhhhhcccccc-eeeCC-----------C-CCCHHHHHhH----HHHHHhcC
Confidence            999999999999999885 55566           6 9999999833    45555553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=6.5e-20  Score=164.21  Aligned_cols=127  Identities=16%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             hhhhHHHHHHHHhCCHHHHHHHHhhcCccccc-----ccccCCCCcHHHHhhhc---CCChHHHHHHHhcCCcccccccc
Q 006173           32 IDSYKQVTRYILENDWKGLEDYIMSKTPNALT-----CIIVDQSSIFEFIVGIP---DVPATLVDKLLSKVPRNCLQNFA  103 (658)
Q Consensus        32 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~-----~~~~~~g~T~Lh~~Aa~---~g~~~iv~~Ll~~~~~~~l~~~~  103 (658)
                      ..+...|+.|++.+|+..++.++ ... .++.     ...+..|+|||| +|+.   .|+.++|++|++++ .+ ++.+ 
T Consensus         4 ~~~l~~L~~Av~~~dl~~l~~~~-~~g-~d~~~~~~~~~~~~~g~t~Lh-~A~~~~~~~~~~iv~~Ll~~g-ad-in~~-   77 (154)
T d1dcqa1           4 AAKLHSLCEAVKTRDIFGLLQAY-ADG-VDLTEKIPLANGHEPDETALH-LAVRSVDRTSLHIVDFLVQNS-GN-LDKQ-   77 (154)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH-HTT-CCTTSBCCCSSCSSTTCBHHH-HHHHHCCTTTHHHHHHHHHHC-SC-TTCC-
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHH-HcC-CCcCCCCCcccCCCCCCchHH-HHHHhcCCCCHHHHHHHHHcC-CC-hhhh-
Confidence            34556789999999999999998 332 2222     223667999999 9996   47889999999994 44 8889 


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhccCCC
Q 006173          104 RDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTR  177 (658)
Q Consensus       104 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~  177 (658)
                      |.+|+||||+||..|+.+++++|+++|+++ +.++.           . |+||||+|++.|+.+++++|++.++
T Consensus        78 d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~-----------~-g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          78 TGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANE-----------S-GETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-----------T-SCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhhccccccccccccccccccccccCccc-cccCC-----------C-CCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999999999999986 56666           6 9999999999999999999999766

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-20  Score=162.84  Aligned_cols=119  Identities=14%  Similarity=0.137  Sum_probs=103.1

Q ss_pred             cHHHHhhhcCCChHHHHHHHhcCCccccccccCCCCChHHHHHHhcCCHHHHHHHHhcCCCCCcccccCCCCCCCcccCC
Q 006173           72 IFEFIVGIPDVPATLVDKLLSKVPRNCLQNFARDEGSEYMEYAVSTGKLNLITTLMGYNEELPNIKVEKKDDPNIKDEEK  151 (658)
Q Consensus        72 T~Lh~~Aa~~g~~~iv~~Ll~~~~~~~l~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~l~~~~~~~~~d~~~~~~~~  151 (658)
                      ++|| .||..|+.++|+.|++++ .+ ++.+ |++|+||||+||..|+.+++++|++.++++ +..+.           +
T Consensus         3 ~lL~-~A~~~G~~~~v~~Ll~~g-~d-~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~-----------~   66 (130)
T d1ycsb1           3 ALLL-DSSLEGEFDLVQRIIYEV-DD-PSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADS-----------D   66 (130)
T ss_dssp             HHHH-HHHHHTCHHHHHHHTSTT-SS-CCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCT-----------T
T ss_pred             HHHH-HHHHcCCHHHHHHHHHcC-CC-cccc-cccccccccccccccccccccccccccccc-ccccc-----------c
Confidence            6899 999999999999999994 44 8888 999999999999999999999999998875 45555           6


Q ss_pred             CCCcHHHHHHHhCcHHHHHHhccCCCC-CCC-CCcchhHHHHH--HhcCcHHHHHHHHHh
Q 006173          152 DDLLPVHMAAKAGKRDAVRHLLPKTRE-PLD-GRQGFVLLKFL--IDSNLFDMALALLKC  207 (658)
Q Consensus       152 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~-~~~g~t~Lh~A--~~~g~~~iv~~LL~~  207 (658)
                       |+||||+|+.+|+.++|++|+++|++ ... ...|.|+++.+  ...|+.+++++|+..
T Consensus        67 -g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          67 -GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             -CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             -CcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence             99999999999999999999999985 333 34577776655  677899999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.9e-18  Score=153.32  Aligned_cols=123  Identities=11%  Similarity=0.045  Sum_probs=104.3

Q ss_pred             HHHHhhhcCCChHHHHHHHhcCCc----cccccccCCCCChHHHHHHhc---CCHHHHHHHHhcCCCCCcccccCCCCCC
Q 006173           73 FEFIVGIPDVPATLVDKLLSKVPR----NCLQNFARDEGSEYMEYAVST---GKLNLITTLMGYNEELPNIKVEKKDDPN  145 (658)
Q Consensus        73 ~Lh~~Aa~~g~~~iv~~Ll~~~~~----~~l~~~~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~l~~~~~~~~~d~~  145 (658)
                      .|+ .|++.++...+..++..+.+    ...... +..|+||||+|++.   |+.++|++|++.|+++ +.++.      
T Consensus         9 ~L~-~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~------   79 (154)
T d1dcqa1           9 SLC-EAVKTRDIFGLLQAYADGVDLTEKIPLANG-HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTG------   79 (154)
T ss_dssp             HHH-HHHHTTCHHHHHHHHHTTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCT------
T ss_pred             HHH-HHHHhCCHHHHHHHHHcCCCcCCCCCcccC-CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhh------
Confidence            455 78899999999999877521    123344 67899999999974   7899999999999886 55666      


Q ss_pred             CcccCCCCCcHHHHHHHhCcHHHHHHhccCCCC-CCCCCcchhHHHHHHhcCcHHHHHHHHHhCCC
Q 006173          146 IKDEEKDDLLPVHMAAKAGKRDAVRHLLPKTRE-PLDGRQGFVLLKFLIDSNLFDMALALLKCHPM  210 (658)
Q Consensus       146 ~~~~~~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~LL~~~~~  210 (658)
                           . |+||||+||..|+.+++++|++++++ ..+|..|.||||+|++.|+.++++.|++....
T Consensus        80 -----~-g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          80 -----K-GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             -----T-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             -----h-hccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                 6 99999999999999999999999985 68899999999999999999999999987443