Citrus Sinensis ID: 006184

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
MGGNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFILD
cccccccccccccccccccccccccEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHccccccEEEccccEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccHHcccccccccHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccccccccccccccccHHHHcEEEEEEEcccccEEEEEEccccccHHHHccHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEcccccccHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHccccccEEEEEEEcccccccccccccccccEEEEEcccHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHcccccEEEEEcccccEEEEEEEc
cccccccccccccccccccccccEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHEEEEcccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHcccccccccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccHHccEEEEEEEccccEEEEEEEEcccHHHHHccccHHHHHHHHccccccHHHHHHHHcccHHHEEccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHEccHHHHHHccHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccEEccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEcccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccEEEcccEEEEEEEEcc
mggngcvwssdeivikspndkrlYRVIELENRLCAllvhdpeiyaddssktlennteedeetfddeyeddeyedeeeddendtekevkgkgifSQTKKAAAAMCVGmgsfcdpvEAQGLAHFLEHMLfmgstefpdeneydsylskhggssnaytetehtcyhFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANvrkgpqikpqftvEGTIWKACKLFRLEAvkdvhildltwtlpclhqEYLKKSEDYLAHLLghegrgslhsflkgrgwatsisagvgdegmhrsSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEfrfaeeqpqdDYAAELAGNlliypaehvIYGEYMYEVWDEEMIKHLLgffmpenmridVVSKSfaksqdfhyepwfgsryteedispslmelwrnppeidvslqlpsqnefiptdfsirandisndlvtvtsptciidepliRFWYKLdntfklprantyfrinlkggydnvknCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFILD
mggngcvwssdeivikspndkrLYRVIELENRLCALLVHdpeiyaddssktlennteedeetfddeyeddeyedeeeddendtekevkgkgifsQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRkgpqikpqftveGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNeilllpkfWLIIFFILD
MGGNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLennteedeetfddeyeddeyedeeeddendteKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFILD
*****CVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIY****************************************************KKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEF******************AYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFIL*
**************IKSPNDKRLYRVIELENRLCALLVHDPEI**************************************************SQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDIS**LVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFILD
MGGNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSS***************************************GKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFILD
*********SDEIVIKSPNDKRLYRVIELENRLCALLVHDPE******************************************KEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFILD
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MGGNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVSRLSFIKNEILLLPKFWLIIFFILD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query657 2.2.26 [Sep-21-2011]
O43847 1150 Nardilysin OS=Homo sapien yes no 0.808 0.461 0.375 1e-107
P35559 1019 Insulin-degrading enzyme yes no 0.856 0.552 0.357 1e-106
Q5R4H6 1152 Nardilysin OS=Pongo abeli no no 0.808 0.460 0.375 1e-106
Q9JHR7 1019 Insulin-degrading enzyme yes no 0.856 0.552 0.354 1e-106
Q24K02 1019 Insulin-degrading enzyme no no 0.840 0.541 0.360 1e-104
P14735 1019 Insulin-degrading enzyme no no 0.840 0.541 0.357 1e-104
O22941 970 Zinc-metallopeptidase, pe no no 0.849 0.575 0.346 1e-98
Q06010 1027 A-factor-processing enzym yes no 0.843 0.539 0.344 1e-96
P22817 990 Insulin-degrading enzyme yes no 0.794 0.527 0.366 9e-95
O14077 969 Putative zinc protease mu yes no 0.837 0.567 0.326 7e-84
>sp|O43847|NRDC_HUMAN Nardilysin OS=Homo sapiens GN=NRD1 PE=1 SV=2 Back     alignment and function desciption
 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 322/540 (59%), Gaps = 9/540 (1%)

Query: 97  KKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTE 156
           K++AAA+CVG+GSF DP +  GLAHFLEHM+FMGS ++PDEN +D++L KHGGS NA T+
Sbjct: 208 KQSAAALCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTD 267

Query: 157 TEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQ 216
            E T + F+++R++ K AL R++QFFI PLM  +A++REV AVDSE+  A  +DA R + 
Sbjct: 268 CERTVFQFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLARPSDANRKEM 327

Query: 217 LQCHTSQLGHAFNKFFWGNKKSLIGAMEK-GINLQEQIMKLYMNYYQGGLMKLVVIGGEP 275
           L    ++ GH   KFFWGN ++L     K  I+   ++ + +M YY    M LVV   E 
Sbjct: 328 LFGSLARPGHPMGKFFWGNAETLKHEPRKNNIDTHARLREFWMRYYSSHYMTLVVQSKET 387

Query: 276 LDTLQSWVVELFANVRKGPQIKPQF---TVEGTIWKACKLFRLEAVKDVHILDLTWTLPC 332
           LDTL+ WV E+F+ +      +P F   T         KL+R+  ++ +H L +TW LP 
Sbjct: 388 LDTLEKWVTEIFSQIPNNGLPRPNFGHLTDPFDTPAFNKLYRVVPIRKIHALTITWALPP 447

Query: 333 LHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSI 392
             Q Y  K   Y++ L+GHEG+GS+ SFL+ + WA ++  G G+ G  ++S   +F +SI
Sbjct: 448 QQQHYRVKPLHYISWLVGHEGKGSILSFLRKKCWALALFGGNGETGFEQNSTYSVFSISI 507

Query: 393 HLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAEL 452
            LTD G E  +++   V+QY+K+L+++ P+K IF+E++ I + EF + E+    +Y   +
Sbjct: 508 TLTDEGYEHFYEVAYTVFQYLKMLQKLGPEKRIFEEIRKIEDNEFHYQEQTDPVEYVENM 567

Query: 453 AGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWF 512
             N+ +YP + ++ G+ +   +  E+I   L   +P+   + ++S +     D   E WF
Sbjct: 568 CENMQLYPLQDILTGDQLLFEYKPEVIGEALNQLVPQKANLVLLSGANEGKCDLK-EKWF 626

Query: 513 GSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCI 572
           G++Y+ EDI  S  ELW +  E++  L LP++N++I TDF+++A D          P  I
Sbjct: 627 GTQYSIEDIENSWAELWNSNFELNPDLHLPAENKYIATDFTLKAFDCPE----TEYPVKI 682

Query: 573 IDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQV 632
           ++ P    WYK DN FK+P+A   F +       +  N +L ++F+++L   L E  Y+ 
Sbjct: 683 VNTPQGCLWYKKDNKFKIPKAYIRFHLISPLIQKSAANVVLFDIFVNILTHNLAEPAYEA 742
Cleaves peptide substrates on the N-terminus of arginine residues in dibasic pairs.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 6EC: 1
>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|Q5R4H6|NRDC_PONAB Nardilysin OS=Pongo abelii GN=NRD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1 Back     alignment and function description
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4 Back     alignment and function description
>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1 Back     alignment and function description
>sp|Q06010|STE23_YEAST A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2 Back     alignment and function description
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4 Back     alignment and function description
>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
224124732 1023 predicted protein [Populus trichocarpa] 0.945 0.607 0.744 0.0
356569463 1030 PREDICTED: insulin-degrading enzyme-like 0.961 0.613 0.742 0.0
356510687 993 PREDICTED: insulin-degrading enzyme-like 0.960 0.635 0.715 0.0
145335200 1024 putative N-arginine dibasic convertase [ 0.960 0.616 0.711 0.0
110738483 1061 hypothetical protein [Arabidopsis thalia 0.960 0.594 0.711 0.0
297848966 1024 metalloendopeptidase [Arabidopsis lyrata 0.960 0.616 0.708 0.0
297745766 1062 unnamed protein product [Vitis vinifera] 0.831 0.514 0.794 0.0
225434343 1045 PREDICTED: insulin-degrading enzyme-like 0.831 0.522 0.794 0.0
449465779 1022 PREDICTED: insulin-degrading enzyme-like 0.958 0.616 0.707 0.0
449517405 1022 PREDICTED: LOW QUALITY PROTEIN: insulin- 0.958 0.616 0.705 0.0
>gi|224124732|ref|XP_002319408.1| predicted protein [Populus trichocarpa] gi|222857784|gb|EEE95331.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/641 (74%), Positives = 539/641 (84%), Gaps = 20/641 (3%)

Query: 6   CVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYAD---DSSKTLENNTEEDEET 62
           CV  SD++VIKSPNDKRLYRVIELEN LCALLVHDPEIY D   D S T+E    + EE 
Sbjct: 5   CVSRSDDVVIKSPNDKRLYRVIELENGLCALLVHDPEIYPDGVPDESGTVEYRENDVEEE 64

Query: 63  FDDEYEDDEYEDEEEDDENDTEKEVKGKGIFS----------QTKKAAAAMCVGMGSFCD 112
            DD+ EDD+ E+++E+ E + E+E +                QTKKAAAAMCV MGSF D
Sbjct: 65  EDDDDEDDDEEEDDEEGEEEEEEEEEENSEGEEEKGKGGASLQTKKAAAAMCVAMGSFSD 124

Query: 113 PVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLK 172
           P EAQGLAHFLEHMLFMGS EFPDENE       HGGSSNAYTE EHTCYHFE+KREFLK
Sbjct: 125 PAEAQGLAHFLEHMLFMGSEEFPDENE-------HGGSSNAYTEAEHTCYHFEVKREFLK 177

Query: 173 GALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFF 232
           GAL RFSQFF+SPLMK EAMEREVLAVDSEFNQ LQ+DACRLQQLQCHTS  GH FN+F 
Sbjct: 178 GALRRFSQFFVSPLMKSEAMEREVLAVDSEFNQVLQSDACRLQQLQCHTSGPGHPFNRFS 237

Query: 233 WGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRK 292
           WGNKKSL+ AMEKGINL+E I+KLY +YY GGLMKLVVIGGEPLD L+SWV ELFA VRK
Sbjct: 238 WGNKKSLVDAMEKGINLREHILKLYRDYYHGGLMKLVVIGGEPLDVLESWVTELFAKVRK 297

Query: 293 GPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHE 352
           GPQ KP+F VEG IWKA  L+RLEAVKDV+ILDLTWTLPCLHQ+YLKKSEDYLAHLLGHE
Sbjct: 298 GPQTKPKFQVEGPIWKAGLLYRLEAVKDVNILDLTWTLPCLHQDYLKKSEDYLAHLLGHE 357

Query: 353 GRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 412
           G+GSLHSFLK RG ATS+SAGVGDEGMHRSS+AYIF MSIHLTD GLEKIFDIIGFVYQY
Sbjct: 358 GKGSLHSFLKARGLATSLSAGVGDEGMHRSSLAYIFGMSIHLTDYGLEKIFDIIGFVYQY 417

Query: 413 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 472
           +KLLR+V PQ+WIFKELQDIGNMEFRFAEEQPQDDYAAELA NLL++PAE+VIY +Y+Y+
Sbjct: 418 LKLLREVPPQQWIFKELQDIGNMEFRFAEEQPQDDYAAELAENLLVFPAENVIYCDYVYK 477

Query: 473 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 532
           +WDE+ IKHLL FF PENMRIDVVSK   KSQD   EPWFGS Y EE I PSL+E+WR+P
Sbjct: 478 IWDEKAIKHLLQFFTPENMRIDVVSKPSVKSQDLQCEPWFGSSYIEEAIPPSLIEIWRDP 537

Query: 533 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 592
            E+DVSL +PS+NEF+P+DFSIRA+++ +DLV  + P CIIDEPL++FWYKLD+TFK+PR
Sbjct: 538 SEVDVSLHMPSKNEFVPSDFSIRADNLDHDLVNASFPRCIIDEPLMKFWYKLDSTFKVPR 597

Query: 593 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS 633
           ANTYFRI LK GY ++K+ ++TELFI LLKDELNEIIYQ S
Sbjct: 598 ANTYFRIYLKDGYASMKSFLMTELFILLLKDELNEIIYQAS 638

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356569463|ref|XP_003552920.1| PREDICTED: insulin-degrading enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|356510687|ref|XP_003524067.1| PREDICTED: insulin-degrading enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|145335200|ref|NP_172173.2| putative N-arginine dibasic convertase [Arabidopsis thaliana] gi|332189930|gb|AEE28051.1| putative N-arginine dibasic convertase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110738483|dbj|BAF01167.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297848966|ref|XP_002892364.1| metalloendopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297338206|gb|EFH68623.1| metalloendopeptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297745766|emb|CBI15822.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225434343|ref|XP_002276484.1| PREDICTED: insulin-degrading enzyme-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449465779|ref|XP_004150605.1| PREDICTED: insulin-degrading enzyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517405|ref|XP_004165736.1| PREDICTED: LOW QUALITY PROTEIN: insulin-degrading enzyme-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
TAIR|locus:2033082 1024 AT1G06900 [Arabidopsis thalian 0.831 0.533 0.760 6.3e-247
ZFIN|ZDB-GENE-070410-85 998 ide "insulin-degrading enzyme" 0.817 0.538 0.394 6.4e-108
RGD|2861 1019 Ide "insulin degrading enzyme" 0.817 0.526 0.389 2.1e-107
RGD|3210 1161 Nrd1 "nardilysin 1" [Rattus no 0.812 0.459 0.375 4.5e-107
UNIPROTKB|P47245 1161 Nrd1 "Nardilysin" [Rattus norv 0.812 0.459 0.375 4.5e-107
UNIPROTKB|O43847 1150 NRD1 "Nardilysin" [Homo sapien 0.812 0.464 0.377 7.2e-107
MGI|MGI:96412 1019 Ide "insulin degrading enzyme" 0.817 0.526 0.385 9.2e-107
UNIPROTKB|J9P4J0 1159 NRD1 "Uncharacterized protein" 0.812 0.460 0.375 1.2e-106
UNIPROTKB|B1AKJ5 1219 NRD1 "Nardilysin" [Homo sapien 0.817 0.440 0.375 1.9e-106
UNIPROTKB|E2RT71 1227 NRD1 "Uncharacterized protein" 0.817 0.437 0.373 3.1e-106
TAIR|locus:2033082 AT1G06900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2243 (794.6 bits), Expect = 6.3e-247, Sum P(2) = 6.3e-247
 Identities = 417/548 (76%), Positives = 473/548 (86%)

Query:    86 EVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLS 145
             EVKGKG   QTKKAAAAMCV MGSF DP EAQGLAHFLEHMLFMGSTEFPDENEYDSYLS
Sbjct:    95 EVKGKGDH-QTKKAAAAMCVSMGSFLDPPEAQGLAHFLEHMLFMGSTEFPDENEYDSYLS 153

Query:   146 KHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQ 205
             KHGGSSNAYTE EHTCYHFE+KREFL+GAL RFSQFF++PLMK EAMEREVLAVDSEFNQ
Sbjct:   154 KHGGSSNAYTEMEHTCYHFEVKREFLQGALKRFSQFFVAPLMKTEAMEREVLAVDSEFNQ 213

Query:   206 ALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGL 265
             ALQNDACRLQQLQC+TS  GH FN+F WGNKKSL GAME G++L+E I+KLY  YY GGL
Sbjct:   214 ALQNDACRLQQLQCYTSAKGHPFNRFAWGNKKSLSGAMENGVDLRECIVKLYKEYYHGGL 273

Query:   266 MKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILD 325
             MKLVVIGGE LD L+SWVVELF +V+ G +I+P    EG IWK  KL+RLEAVKDVHILD
Sbjct:   274 MKLVVIGGESLDMLESWVVELFGDVKNGSKIRPTLEAEGPIWKGGKLYRLEAVKDVHILD 333

Query:   326 LTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIA 385
             LTWTLP L   Y+KK EDYLAHLLGHEGRGSLHSFLK +GWATS+SAGVGD+G++RSS+A
Sbjct:   334 LTWTLPPLRSAYVKKPEDYLAHLLGHEGRGSLHSFLKAKGWATSLSAGVGDDGINRSSLA 393

Query:   386 YIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQ 445
             Y+F MSIHLTDSGLEKI+DIIG++YQY+KLLR VSPQ+WIFKELQDIGNM+FRFAEEQP 
Sbjct:   394 YVFGMSIHLTDSGLEKIYDIIGYIYQYLKLLRDVSPQEWIFKELQDIGNMDFRFAEEQPA 453

Query:   446 DDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQD 505
             DDYAAEL+ N+L YP EHVIYG+Y+Y+ WD ++I+ L+GFF P+NMRIDVVSKS  KS++
Sbjct:   454 DDYAAELSENMLAYPVEHVIYGDYVYQTWDPKLIEDLMGFFTPQNMRIDVVSKSI-KSEE 512

Query:   506 FHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVT 565
             F  EPWFGS Y EED+  SLME W NP E+D SL LPS+N+FIP DFSIRA +   D  +
Sbjct:   513 FQQEPWFGSSYIEEDVPLSLMESWSNPSEVDNSLHLPSKNQFIPCDFSIRAINSDVDPKS 572

Query:   566 VTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL 625
              + P CIIDEP ++FWYKLD TFK+PRANTYFRINLKG Y +VKNC+LTEL+I+LLKDEL
Sbjct:   573 QSPPRCIIDEPFMKFWYKLDETFKVPRANTYFRINLKGAYASVKNCLLTELYINLLKDEL 632

Query:   626 NEIIYQVS 633
             NEIIYQ S
Sbjct:   633 NEIIYQAS 640
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
ZFIN|ZDB-GENE-070410-85 ide "insulin-degrading enzyme" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2861 Ide "insulin degrading enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|3210 Nrd1 "nardilysin 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P47245 Nrd1 "Nardilysin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O43847 NRD1 "Nardilysin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96412 Ide "insulin degrading enzyme" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9P4J0 NRD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B1AKJ5 NRD1 "Nardilysin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RT71 NRD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00131241
hypothetical protein (1023 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 1e-133
PRK15101 961 PRK15101, PRK15101, protease3; Provisional 4e-67
TIGR02110 696 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis 3e-32
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 7e-30
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 3e-21
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 1e-17
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 3e-04
COG1026 978 COG1026, COG1026, Predicted Zn-dependent peptidase 0.002
pfam09026101 pfam09026, Cenp-B_dimeris, Centromere protein B di 0.004
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  414 bits (1066), Expect = e-133
 Identities = 205/629 (32%), Positives = 317/629 (50%), Gaps = 78/629 (12%)

Query: 12  EIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDE 71
             + K   D R YR I+L N L ALLV DP                              
Sbjct: 12  LTIHKPALDDRKYRAIKLPNGLRALLVSDP------------------------------ 41

Query: 72  YEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGS 131
                                  Q  K++AA+ V +GSF DP E  GLAHFLEHMLFMGS
Sbjct: 42  -----------------------QADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGS 78

Query: 132 TEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEA 191
            ++PDE  +  +LSKHGGS NA T  E T ++FE++ + L+GAL RF+ FFI PL   EA
Sbjct: 79  EKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEA 138

Query: 192 MEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQE 251
           ++RE  AV+SEF   L +D  R+ Q+Q  T+  GH  +KF  GN ++L  + + G+ +Q+
Sbjct: 139 LDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLETL--SDKPGLVVQQ 196

Query: 252 QIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANV----RKGPQIK-PQFTVEGTI 306
           ++ + +  +Y    MKLV+ G +PLD L     +LF ++    RK P I  P  T E T 
Sbjct: 197 ELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTG 256

Query: 307 WKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGW 366
               K+  +   K    L + + +     ++  K ++YL+HL+G+E  GSL ++LK +G 
Sbjct: 257 ----KIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGL 312

Query: 367 ATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIF 426
            T +SAG+       S    +F +S  LTD GL     +I   +QY+ LLR+    K+ F
Sbjct: 313 ITELSAGLD----PISGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTF 368

Query: 427 KELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFF 486
            ELQ++ +++FR+  +    DY + LA N+   P EH +Y   +   +D + I+  L   
Sbjct: 369 DELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPVEHTLYASLVLPRYDPKAIQERLALM 428

Query: 487 MPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNE 546
            PEN R+ ++SK     +      ++G  Y  +D +   ++ W+   +  + L LP  N 
Sbjct: 429 TPENARLWLISKLEEHDKA---AYFYGFPYQVDDYTAQPLDAWQQKADS-IELSLPEPNP 484

Query: 547 FIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFK-LPRANTYFRINLKGGY 605
           FIP D S+  ++        T P  + ++P +R WY  ++ F   P+A+    I      
Sbjct: 485 FIPDDVSLIKSE-----KKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHAS 539

Query: 606 DNVKNCILTELFIHLLKDELNEIIYQVSR 634
            + +N +LTEL+ +L  D L+++ YQ S 
Sbjct: 540 RSPRNQVLTELYAYLANDALDKLSYQASL 568

Length = 937
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 657
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
PRK15101 961 protease3; Provisional 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.96
PRK15101961 protease3; Provisional 99.96
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.96
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.94
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.92
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.89
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.86
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.37
PTZ004321119 falcilysin; Provisional 99.3
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 98.98
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 98.92
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 98.69
PF03410590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.02
PHA03081595 putative metalloprotease; Provisional 97.81
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 97.73
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 96.8
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 96.55
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 95.97
KOG2067472 consensus Mitochondrial processing peptidase, alph 92.11
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 87.42
KOG0960467 consensus Mitochondrial processing peptidase, beta 84.11
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-105  Score=890.67  Aligned_cols=580  Identities=45%  Similarity=0.768  Sum_probs=550.3

Q ss_pred             CCCCCCcccCCCccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccc
Q 006184            1 MGGNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDE   80 (657)
Q Consensus         1 ~~~~~~~~~~~~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (657)
                      |+++..+...+..++|+..|.|.||.++|+|||+|+|++||.+      +                              
T Consensus         5 ~~~~~~~~~~~~~~~k~~~d~r~yr~~~L~Ngl~alLisDp~t------D------------------------------   48 (974)
T KOG0959|consen    5 MSGNIVLKREDVSIVKSLGDTREYRGIELTNGLRALLISDPKT------D------------------------------   48 (974)
T ss_pred             cccchhhhhcccccccCCCCccceeEEEecCCceEEEecCCCC------C------------------------------
Confidence            5778889999999999999999999999999999999999988      6                              


Q ss_pred             cchhhhhcccccccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCce
Q 006184           81 NDTEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHT  160 (657)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t  160 (657)
                                       ++++++.|++||+.||.+.+|||||||||+||||+|||.||+|..||++|||+.||+|+.++|
T Consensus        49 -----------------~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T  111 (974)
T KOG0959|consen   49 -----------------KSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHT  111 (974)
T ss_pred             -----------------ccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccccccc
Confidence                             899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhh
Q 006184          161 CYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLI  240 (657)
Q Consensus       161 ~~~~~~~~~~l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~  240 (657)
                      +|+|++.+++|+.|||+|+++|.+|+|++++++||+.||++|++++.+++.||..++.+.++.++|||++|++||.++|.
T Consensus       112 ~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~  191 (974)
T KOG0959|consen  112 NYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLL  191 (974)
T ss_pred             eEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-hhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccc---cceEEEEe
Q 006184          241 G-AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLE  316 (657)
Q Consensus       241 ~-~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~---~~~~~~~~  316 (657)
                      . |+++  .++++|++||++||++++|++||+|+.++|.|+.||.+.|+.++++..+.|.+..  +|+.   .++.+.+.
T Consensus       192 ~~p~~~--~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~--~p~~~e~~~~~~~v~  267 (974)
T KOG0959|consen  192 EGPREI--DLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPE--PPFLPEELKKLVRVV  267 (974)
T ss_pred             hccccc--hHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccC--CCCChHHhCcEEEEE
Confidence            4 4333  6799999999999999999999999999999999999999999999888877733  3332   78889999


Q ss_pred             ecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCc
Q 006184          317 AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTD  396 (657)
Q Consensus       317 ~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~  396 (657)
                      |.++.+.+.|.|++|+....|+.+|.+++++|+||+|+|+|+++||++||+.++.++......++    +.|.|.+.++.
T Consensus       268 pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~~as~~----~~f~v~idLtd  343 (974)
T KOG0959|consen  268 PIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPEFASGY----SFFNVSIDLTD  343 (974)
T ss_pred             eccccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCcccccc----ceEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999887554444    49999999999


Q ss_pred             cccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCH
Q 006184          397 SGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDE  476 (657)
Q Consensus       397 ~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~  476 (657)
                      +|++++++|+..++++|+.|+..++..|.+++.+.+....|+|+.+..+.+++..++.+|+.||+++++.+.+++.++.+
T Consensus       344 ~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P~~~il~~~~ll~~~~p  423 (974)
T KOG0959|consen  344 EGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQYYPVEDVLTGSYLLTEFDP  423 (974)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcccCChHHhhcchhhhhhcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCcCceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcCCCCCCCCCCCCCccccc
Q 006184          477 EMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRA  556 (657)
Q Consensus       477 edI~~~~~~l~~~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~fip~d~~l~~  556 (657)
                      +.|+.++..|.|.|+++++++..+ .++++..|+||||.|.+++||.++++.|.+... +++|+||.+|.|||+||++++
T Consensus       424 ~~i~~~~~~L~p~n~~v~~~s~~~-~~~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~-~~~l~lP~~nefI~t~f~~~~  501 (974)
T KOG0959|consen  424 DLIQEVLSSLVPSNMRVILVSRSF-EGKTDKAEPWYGTAYKVEDIPAEIIKEWENSHL-NPELHLPTPNEFIPTDFSILP  501 (974)
T ss_pred             HHHHHHHHhcCcccceeeeeeecc-ccccccccceeccccccccCCHHHHHHhhccCc-cccccCCCCCccccccccccc
Confidence            999999999999999999999999 788999999999999999999999999966554 799999999999999999998


Q ss_pred             cccCCCCcCCCCCeEEecCCCcEEEEecCCccCCceeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhhccccC---
Q 006184          557 NDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS---  633 (657)
Q Consensus       557 ~~~~~~~~~~~~P~~~~~~~~~~~w~k~d~~F~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~~Y~a~---  633 (657)
                      .+...    ...|++|.+++..++|||+|+.|++||+++.+.|.+|.+..+|.+++++.+|..++.|+|+|+.|+|.   
T Consensus       502 ~~~~~----~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aG  577 (974)
T KOG0959|consen  502 APIPK----LEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAG  577 (974)
T ss_pred             ccCcc----ccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            77543    34899999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             ---cccccCCCeEEehh
Q 006184          634 ---RLSFIKNEILLLPK  647 (657)
Q Consensus       634 ---~~~~~~~gi~~~~~  647 (657)
                         +++.+.+|+.++|.
T Consensus       578 l~~~~~~s~~G~~~~v~  594 (974)
T KOG0959|consen  578 LTYSLSSSSKGVELRVS  594 (974)
T ss_pred             ceEEeeecCCceEEEEe
Confidence               88888999999864

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
3cww_A 990 Crystal Structure Of Ide-Bradykinin Complex Length 1e-109
3qz2_A 990 The Structure Of Cysteine-Free Human Insulin Degrad 1e-109
2wby_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-109
3hgz_A 969 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-108
3e4a_A 1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 1e-108
3e4z_A 990 Crystal Structure Of Human Insulin Degrading Enzyme 1e-108
3p7l_A 978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 1e-108
3tuv_A 1019 Crystal Structure Of Insulysin With Bound Atp Lengt 1e-108
3p7o_A 1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 1e-107
2jg4_A 990 Substrate-Free Ide Structure In Its Closed Conforma 1e-105
2g47_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-105
1q2l_A 939 Crystal Structure Of Pitrilysin Length = 939 3e-58
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 4e-11
3eoq_A406 The Crystal Structure Of Putative Zinc Protease Bet 2e-08
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 5e-08
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 1e-07
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 9e-07
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 1e-06
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure 
Iteration: 1

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/621 (36%), Positives = 342/621 (55%), Gaps = 69/621 (11%)
Query: 14  VIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLXXXXXXXXXXXXXXXXXXXXX 73
           + KSP DKR YR +EL N +  LL+ DP                                
Sbjct: 25  ITKSPEDKREYRGLELANGIKVLLISDP-------------------------------- 52
Query: 74  XXXXXXXXXXXKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTE 133
                                 T K++AA+ V +GS  DP    GL+HFL+HMLF+G+ +
Sbjct: 53  ---------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKK 91
Query: 134 FPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAME 193
           +P ENEY  +LS+H GSSNA+T  EHT Y+F++  E L+GAL RF+QFF+SPL    A +
Sbjct: 92  YPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKD 151
Query: 194 REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSL-IGAMEKGINLQEQ 252
           REV AVDSE  + + NDA RL QL+  T    H F+KF  GNK +L     ++GI+++++
Sbjct: 152 REVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211
Query: 253 IMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACK- 311
           ++K +  YY   LM +VV+G E LD L + VV+LF+ V       P+F       +  K 
Sbjct: 212 LLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQ 271
Query: 312 LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSIS 371
           L+++  +KD+  L +T+ +P L + Y      YL HL+GHEG GSL S LK +GW  ++ 
Sbjct: 272 LYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLV 331
Query: 372 AG--VGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKEL 429
            G   G  G         F++++ LT+ GL  + DII  ++QYI+ LR   PQ+W+F+EL
Sbjct: 332 GGQKAGARGF------MFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQEL 385
Query: 430 QDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489
           +D+  + FRF +++    Y +++AG L  YP E V+  EY+ E +  ++I+ +L    PE
Sbjct: 386 KDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPE 445
Query: 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIP 549
           N+R+ +VSKSF    D   E W+G++Y +E I  +++  W+N   ++   +LP++NEFIP
Sbjct: 446 NVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDAVIAKWQN-AALNGKFKLPTKNEFIP 503
Query: 550 TDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVK 609
           T+F I    +  +      P  I D  + + W+K D+ F LP+AN  F       Y +  
Sbjct: 504 TNFEI----LPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPL 559
Query: 610 NCILTELFIHLLKDELNEIIY 630
           +  +  L++ LLKD LNE  Y
Sbjct: 560 HSNMAYLYLELLKDSLNEYAY 580
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin Length = 939 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta- Subunit From Thermus Thermophilus Hb8 Length = 406 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 1e-163
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-157
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 2e-21
3go9_A492 Insulinase family protease; IDP00573, structural g 2e-20
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-14
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 6e-14
3eoq_A406 Putative zinc protease; two similar domains of bet 5e-13
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-12
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 3e-12
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 4e-12
3gwb_A434 Peptidase M16 inactive domain family protein; pept 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 9e-12
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-11
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 4e-11
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 2e-10
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-08
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 4e-08
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
 Score =  493 bits (1270), Expect = e-163
 Identities = 222/627 (35%), Positives = 338/627 (53%), Gaps = 65/627 (10%)

Query: 7   VWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDE 66
           +      + KSP DKR YR +EL N +  LL+ DP                         
Sbjct: 18  IKRIGNHITKSPEDKREYRGLELANGIKVLLISDP------------------------- 52

Query: 67  YEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHM 126
                                        T K++AA+ V +GS  DP    GL+HFL+HM
Sbjct: 53  ----------------------------TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHM 84

Query: 127 LFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFISPL 186
           LF+G+ ++P ENEY  +LS+H GSSNA+T  EHT Y+F++  E L+GAL RF+QFF+SPL
Sbjct: 85  LFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPL 144

Query: 187 MKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIG-AMEK 245
               A +REV AVDSE  + + NDA RL QL+  T    H F+KF  GNK +L     ++
Sbjct: 145 FDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQE 204

Query: 246 GINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGT 305
           GI+++++++K +  YY   LM +VV+G E LD L + VV+LF+ V       P+F     
Sbjct: 205 GIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPF 264

Query: 306 IWKAC-KLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGR 364
             +   +L+++  +KD+  L +T+ +P L + Y      YL HL+GHEG GSL S LK +
Sbjct: 265 QEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSK 324

Query: 365 GWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKW 424
           GW  ++  G              F++++ LT+ GL  + DII  ++QYI+ LR   PQ+W
Sbjct: 325 GWVNTLVGGQKAGARGFM----FFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEW 380

Query: 425 IFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLG 484
           +F+EL+D+  + FRF +++    Y +++AG L  YP E V+  EY+ E +  ++I+ +L 
Sbjct: 381 VFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLD 440

Query: 485 FFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQ 544
              PEN+R+ +VSKSF    D   E W+G++Y +E I  +++  W+N        +LP++
Sbjct: 441 KLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDAVIAKWQNAALNG-KFKLPTK 498

Query: 545 NEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGG 604
           NEFIPT+F I   + +           I D  + + W+K D+ F LP+AN  F       
Sbjct: 499 NEFIPTNFEILPLEAAATPYPA----LIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFA 554

Query: 605 YDNVKNCILTELFIHLLKDELNEIIYQ 631
           Y +  +  +  L++ LLKD LNE  Y 
Sbjct: 555 YVDPLHSNMAYLYLELLKDSLNEYAYA 581
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.96
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.96
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 99.92
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.88
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.75
3ih6_A197 Putative zinc protease; bordetella pertussis toham 97.81
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 97.5
3eoq_A406 Putative zinc protease; two similar domains of bet 97.38
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.33
3gwb_A434 Peptidase M16 inactive domain family protein; pept 97.27
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.21
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 97.17
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 97.08
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 97.04
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 96.88
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 96.82
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 96.61
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 96.13
3go9_A492 Insulinase family protease; IDP00573, structural g 93.6
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
Probab=100.00  E-value=2.6e-79  Score=732.03  Aligned_cols=568  Identities=27%  Similarity=0.447  Sum_probs=507.6

Q ss_pred             CCCccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcc
Q 006184           10 SDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKG   89 (657)
Q Consensus        10 ~~~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (657)
                      ....|+||+.|.+.|+.++|+|||+|++++++..      +                                       
T Consensus         7 ~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~------~---------------------------------------   41 (939)
T 1q2l_A            7 IQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQA------V---------------------------------------   41 (939)
T ss_dssp             CCSCCCCCTTCCCEEEEEEETTSCEEEEEECTTC------S---------------------------------------
T ss_pred             ccccCcCCCCCCcceEEEEecCCCEEEEEECCCC------C---------------------------------------
Confidence            4457999999999999999999999999999988      7                                       


Q ss_pred             cccccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChh
Q 006184           90 KGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKRE  169 (657)
Q Consensus        90 ~~~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~  169 (657)
                              .++++++|++||++||.+.+|+|||||||+|+||++||.++++.++++++||++||+|+.++|+|+++++++
T Consensus        42 --------~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~  113 (939)
T 1q2l_A           42 --------KSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVEND  113 (939)
T ss_dssp             --------SEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGG
T ss_pred             --------ceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHH
Confidence                    899999999999999999999999999999999999997679999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccH
Q 006184          170 FLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINL  249 (657)
Q Consensus       170 ~l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~  249 (657)
                      +|+.+|++|++++.+|.|+++++++|+.+|.+|++.+.++|.+++.+.+..++|++|||+++.+|+.++|.+  ..+.++
T Consensus       114 ~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~--~~~~~~  191 (939)
T 1q2l_A          114 ALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSD--KPGNPV  191 (939)
T ss_dssp             GHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSC--BTTBCH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhc--CCCchH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985  234479


Q ss_pred             HHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccc---cceEEEEeecCcccEEEE
Q 006184          250 QEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLEAVKDVHILDL  326 (657)
Q Consensus       250 ~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i  326 (657)
                      +++|++||++||+|+||+|||+|++++++++++|+++|++||++..+.+...  .+++.   .+..+...+..+++.+.+
T Consensus       192 ~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i  269 (939)
T 1q2l_A          192 QQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEIT--VPVVTDAQKGIIIHYVPALPRKVLRV  269 (939)
T ss_dssp             HHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCC--SCSCCGGGSSEEEEECCSSCCCEEEE
T ss_pred             HHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCC--CCCCCHHHcCEEEEEEeCCCCcEEEE
Confidence            9999999999999999999999999999999999999999998654433221  12221   234555567778899999


Q ss_pred             EEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHH
Q 006184          327 TWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDII  406 (657)
Q Consensus       327 ~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~  406 (657)
                      +|++|.....++..++.+++++||+++.|+|++.||++||+|+++++.....   ..+.|.|.|++.++++|.+++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~---~~~~g~f~i~~~~~~~~~~~~~~~~  346 (939)
T 1q2l_A          270 EFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIV---NGNSGVLAISASLTDKGLANRDQVV  346 (939)
T ss_dssp             EEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESST---TSSEEEEEEEEEECHHHHHTHHHHH
T ss_pred             EEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeecccccc---CCCceEEEEEEEEChhhhhhHHHHH
Confidence            9999987766677899999999999999999999999999999998753211   1245699999999998878999999


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhhc
Q 006184          407 GFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFF  486 (657)
Q Consensus       407 ~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~~l  486 (657)
                      +.++++|+++++.|+++++++++|+.+..+|.+....++..++..++.++..+++++++.+...++++|+++|++++++|
T Consensus       347 ~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~~l  426 (939)
T 1q2l_A          347 AAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMM  426 (939)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhcCchhhhccCHHHHHHHHHhc
Confidence            99999999999999999999999999999998877567788999999888877777777777889999999999999999


Q ss_pred             CcCceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcCCCCCCCCCCCCCccccccccCCCCcCC
Q 006184          487 MPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTV  566 (657)
Q Consensus       487 ~~~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~fip~d~~l~~~~~~~~~~~~  566 (657)
                      .++++++++++|.   ...+.+++||||+|.+.+++.++++.|..... ...+++|.+|+|||++|++......     .
T Consensus       427 ~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~n~~~~~~~~~~~~~~~-----~  497 (939)
T 1q2l_A          427 TPQNARIWYISPK---EPHNKTAYFVDAPYQVDKISAQTFADWQKKAA-DIALSLPELNPYIPDDFSLIKSEKK-----Y  497 (939)
T ss_dssp             SGGGCEEEEECTT---CCCCEECTTTCCEEEEEECCHHHHHHHHHHHH-TCCCCCCCCCTTCCCCCCCCCCSSC-----C
T ss_pred             CHHHcEEEEEcCC---CCCCcccceeCCeeeeeeCCHHHHHHHhccCc-cccccCCCCCcCCCcCcccccCcCC-----C
Confidence            9999999999996   45678899999999999999999999987543 5679999999999999998754322     2


Q ss_pred             CCCeEEecCCCcEEEEecCCccCCc-eeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhhccccC------cccccC
Q 006184          567 TSPTCIIDEPLIRFWYKLDNTFKLP-RANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS------RLSFIK  639 (657)
Q Consensus       567 ~~P~~~~~~~~~~~w~k~d~~F~~P-k~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~~Y~a~------~~~~~~  639 (657)
                      ..|.++..++++++||++|+.|++| ++.|.+.+.+|....++.+..++.|+..++.+.+.++.|++.      +++. .
T Consensus       498 ~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~  576 (939)
T 1q2l_A          498 DHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-N  576 (939)
T ss_dssp             SSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-S
T ss_pred             CCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-C
Confidence            3799999999999999999999996 999999999999999999999999999999999999988888      6666 7


Q ss_pred             CCeEEehh
Q 006184          640 NEILLLPK  647 (657)
Q Consensus       640 ~gi~~~~~  647 (657)
                      .|+.+.+.
T Consensus       577 ~g~~~~~~  584 (939)
T 1q2l_A          577 NGLMVNAN  584 (939)
T ss_dssp             SEEEEEEE
T ss_pred             CcEEEEEE
Confidence            88877653
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 657
d1q2la3240 d.185.1.1 (A:264-503) Protease III {Escherichia co 7e-63
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 1e-23
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 4e-21
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 1e-17
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 2e-16
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 5e-15
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 1e-14
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 2e-11
d1q2la1 229 d.185.1.1 (A:504-732) Protease III {Escherichia co 5e-11
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 3e-09
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 6e-09
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score =  206 bits (526), Expect = 7e-63
 Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 7/232 (3%)

Query: 311 KLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSI 370
            +          +L + + +     ++  K+++ + +L+G+   G+L  +L+ +G    I
Sbjct: 14  IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGI 73

Query: 371 SAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQ 430
           SA         S +     +S  LTD GL     ++  ++ Y+ LLR+    K  F EL 
Sbjct: 74  SANSDPIVNGNSGV---LAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELA 130

Query: 431 DIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPEN 490
           ++ +++FR+       DY   LA  ++  P EH +    + + +D + +K  L    P+N
Sbjct: 131 NVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQN 190

Query: 491 MRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLP 542
            RI  +S     ++      +  + Y  + IS      W+     D++L LP
Sbjct: 191 ARIWYISPKEPHNKT---AYFVDAPYQVDKISAQTFADWQK-KAADIALSLP 238
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 100.0
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.87
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.79
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.78
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.7
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.65
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.59
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.4
d1q2la1 229 Protease III {Escherichia coli [TaxId: 562]} 99.21
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.56
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.44
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.18
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.15
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 97.9
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 97.79
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 97.79
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 97.55
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 97.42
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 97.32
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 97.31
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 97.29
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 97.14
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 97.1
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 96.37
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 96.37
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 96.26
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 95.65
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 91.53
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 89.28
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 87.44
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-41  Score=336.79  Aligned_cols=231  Identities=35%  Similarity=0.548  Sum_probs=218.7

Q ss_pred             CccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccc
Q 006184           12 EIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKG   91 (657)
Q Consensus        12 ~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (657)
                      ..+.|+..|.+.|+.++|+|||+|++++++..      +                                         
T Consensus         9 ~~~~k~~~d~~~~~~~~L~NGl~V~~~~~~~~------~-----------------------------------------   41 (240)
T d1q2la4           9 ETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQA------V-----------------------------------------   41 (240)
T ss_dssp             SCCCCCTTCCCEEEEEEETTSCEEEEEECTTC------S-----------------------------------------
T ss_pred             ccCCCCCCCCcceEEEEcCCCCEEEEEECCCC------C-----------------------------------------
Confidence            46789999999999999999999999999988      7                                         


Q ss_pred             cccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhH
Q 006184           92 IFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFL  171 (657)
Q Consensus        92 ~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l  171 (657)
                            .+.+++.+++|+.+||++..|+||+++||+|+|+.+++...++.++++.+|+.+||+|+.++|+|+++++++++
T Consensus        42 ------~v~~~l~~~~Gs~~e~~~~~Gla~ll~~ll~~gt~~~~~~~~~~~~~~~~g~~~na~~~~~~t~~~~~~~~~~l  115 (240)
T d1q2la4          42 ------KSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDAL  115 (240)
T ss_dssp             ------SEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGGGH
T ss_pred             ------EEEEEEEEeCCccccccchHHHHHHHHHhhhcccCcchhhHHHHHHHHHcCCeecccccccceeeecccccccc
Confidence                  99999999999999999999999999999999999998877999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHH
Q 006184          172 KGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQE  251 (657)
Q Consensus       172 ~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~  251 (657)
                      +.+|+++++++.+|.|+++.+++++..+.+|++....+|...+.+.++.++|++||++++..|+.++|..-  ...++++
T Consensus       116 ~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~~--~~~~~~~  193 (240)
T d1q2la4         116 PGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDK--PGNPVQQ  193 (240)
T ss_dssp             HHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCB--TTBCHHH
T ss_pred             ccchhhhhHHhcCCcchhhhhhhhhhhhhhhhhhhcchhHHHHHHHHHHHhcccCcccccCCCCchhHHHh--hhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998741  1226899


Q ss_pred             HHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCC
Q 006184          252 QIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIK  297 (657)
Q Consensus       252 ~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~  297 (657)
                      +|++||++||+|+||+|||+|++++++++++|+++||.||+++.+.
T Consensus       194 ~l~~f~~~~y~p~n~~l~i~G~~~~~~l~~~i~~~fg~lp~~~~~~  239 (240)
T d1q2la4         194 ALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKK  239 (240)
T ss_dssp             HHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCC
T ss_pred             HHHHHHHHhCCcCcEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence            9999999999999999999999999999999999999999876543
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure