Citrus Sinensis ID: 006186

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSFSDC
ccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHcHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHcHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccHHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHcccccccHHccEEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEEEccHHHHHHHHHHHcHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEcccccccccEEEccccccccEEHHHHcccccccEEEEEccccc
ccccEEEEEEEEcccccccccccccEccccccccccccccccccccccccccccccEEcccHHHccccccHccccHHHHHHcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccEEEcccccccccccccccEcccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccccccEEEccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHEEccccccccEEccEEEEccccccEEEEEEcHHHHHHHHHHHHEHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHcccccccccEEEEEcccccccccEEEccccccccEEEEEEHHHHccccEEEEccccc
mtgmavptialyasppssvcsathqinahttydfdlnsrssastsstaaapssqkqtigglsclfssssemgsyRSEELKELSssfgyayspsklcgsssslkrdqspvsvfqgpvscsgngsysysrssppirtarekadvnvnfhtffkgssglfNGFVRNALgscvdydsssfrvhngdavlnvgssaALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAhrgqmrasgdpylLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNmmtldalplckrQRFAKETLEIFVPLANRLGISTWKVQLENLcfkhlnpdqhtELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEvpgkmkdyitrpkfngyqslhtvvtgeglvplEVQIRTKEMHLQAEFGFAAhwrykegdcqhsSFVLQMVEWARWVLTWQCeamskdrscvgngdsikppctfpshaddcpfsykpqcshdgpvFVIMIENDKVSFKYHFQCYVSMKWkymcsfsdc
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSStaaapssqkqtiggLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFqgpvscsgngsysysrsspPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQlsklarenntasktveadrLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSFSDC
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNsrssastsstaaapssQKQTIGGLSCLFssssemgsyrseeLKELSSSFGYAYspsklcgsssslkRDQSPVSVFQGPVscsgngsysysrssPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSFSDC
********IALY*******CSATHQINAHTTYD***********************************************************************************************************DVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLS***************VEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSF***
****AVPTIALYASPPSSVCSATHQI************************************************************************************************************************************GFVRNALG*****************************************GNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENN****TVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRY***************EWARWVLTWQCEA*****SCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSFSDC
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLN********************IGGLSCLFSS****************SSFGYAYSPSK****************VFQGPVSCSG*************RTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSFSDC
*TGMAVPTIALYASPPSSVCS**********Y******************************CLF***********************AYSP************DQSPVSVFQGPV*C***************************F*T**KGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVL***SSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSFS*C
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMCSFSDC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query657 2.2.26 [Sep-21-2011]
P74007 760 Probable guanosine-3',5'- N/A no 0.525 0.453 0.448 1e-77
O87331 760 GTP pyrophosphokinase OS= yes no 0.515 0.446 0.433 5e-75
O54408 734 GTP pyrophosphokinase OS= yes no 0.525 0.470 0.418 2e-73
Q8CS97 729 GTP pyrophosphokinase OS= yes no 0.488 0.440 0.419 2e-72
Q5HNR8 729 GTP pyrophosphokinase OS= yes no 0.488 0.440 0.419 2e-72
O52177 757 GTP pyrophosphokinase OS= yes no 0.514 0.446 0.410 8e-72
P52560 847 GTP pyrophosphokinase OS= yes no 0.511 0.396 0.417 1e-71
O85709 841 GTP pyrophosphokinase OS= N/A no 0.511 0.399 0.413 2e-70
P0A0E9 736 GTP pyrophosphokinase OS= yes no 0.488 0.436 0.410 5e-70
P0A0F0 736 GTP pyrophosphokinase OS= yes no 0.488 0.436 0.410 5e-70
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1 Back     alignment and function desciption
 Score =  291 bits (744), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/357 (44%), Positives = 222/357 (62%), Gaps = 12/357 (3%)

Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
            + +AF  A   H  Q R SG+PY+ H V  A LL  +G +  ++AAG LHD ++D  +S
Sbjct: 53  LICRAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDIS 112

Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
            + I   FG   A LVEGV+KLS+       N +++   +A+    MFLAMA D R +++
Sbjct: 113 IEQIEALFGEETASLVEGVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVV 166

Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
           KLADRLHNM TLDAL   K++R A+ET +IF PLANRLGI  +K +LE+L FK+L PD +
Sbjct: 167 KLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSY 226

Query: 411 TELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
            ++ S +VE     E+ + +  + L   L+D+ I    L GR K LY I+ KM  +    
Sbjct: 227 RKIQSLVVEKRGDRESRLETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKMTSQDKAF 286

Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEG 528
           +EI+DI  LR+IVE++ +CY+AL VVH ++  +PG+ KDYI  PK N YQSLHT V G  
Sbjct: 287 EEIYDIAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLT 346

Query: 529 LVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 582
             PLE+QIRT+EMH  AE+G AAHW+YKE     ++ +    E   W R +L WQ +
Sbjct: 347 SRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=relA PE=3 SV=2 Back     alignment and function description
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 Back     alignment and function description
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
224054061716 predicted protein [Populus trichocarpa] 0.939 0.861 0.733 0.0
225442114724 PREDICTED: GTP pyrophosphokinase-like [V 0.934 0.848 0.730 0.0
224070802737 predicted protein [Populus trichocarpa] 0.939 0.837 0.729 0.0
356558920715 PREDICTED: uncharacterized protein LOC10 0.919 0.844 0.723 0.0
33637487718 RSH2 [Nicotiana tabacum] 0.940 0.860 0.719 0.0
356519788714 PREDICTED: uncharacterized protein LOC10 0.917 0.844 0.723 0.0
15081594721 RSH-like protein [Capsicum annuum] 0.925 0.843 0.707 0.0
15822693643 relA/spoT-like protein RSH2 [Nicotiana t 0.936 0.956 0.721 0.0
37196706729 RelA-SpoT like protein PsRSH1 [Pisum sat 0.923 0.832 0.694 0.0
449461673733 PREDICTED: GTP pyrophosphokinase-like [C 0.943 0.845 0.683 0.0
>gi|224054061|ref|XP_002298089.1| predicted protein [Populus trichocarpa] gi|222845347|gb|EEE82894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/653 (73%), Positives = 543/653 (83%), Gaps = 36/653 (5%)

Query: 4   MAVPTIALYASPPSSVCSATH--QINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGL 61
           MAVPTIALYASPPSSVCS  +  QINAH  YDF+LNSRSS++ SS+A++  SQK  +GGL
Sbjct: 1   MAVPTIALYASPPSSVCSTPYPCQINAHANYDFELNSRSSSTASSSASS--SQKPIVGGL 58

Query: 62  SCLFSSSS-----------EMGSY-RSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPV 109
           S LFSS +           E+G + R +ELKELSSSF   Y+PSK C + SS+KRDQSPV
Sbjct: 59  SRLFSSPAVKHASFSGDREELGWHDRGDELKELSSSF--CYTPSK-CLAGSSIKRDQSPV 115

Query: 110 SVFQGPVSCSGNGSYSYSRSSPPIRTAREKADVNVNFHT-----FFKGSSGLFNGFVRNA 164
           SV QG VSCS         SSPP R ARE++  +V F +     F  G++GLFNGFVRNA
Sbjct: 116 SVLQGQVSCS---------SSPPTRIARERSGCDVGFQSSIHGSFRSGANGLFNGFVRNA 166

Query: 165 LGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLK 224
           LGSCVDYDS SF VHN    ++  SS+ ++DELTF+MED+ V+ N E YAKE L  AQ +
Sbjct: 167 LGSCVDYDSPSFEVHNNG--IDEDSSSVVVDELTFSMEDSCVDANYEPYAKELLFGAQSR 224

Query: 225 HKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDT 284
           H IF +DFVIKAF+EAE+AHRGQMRASGDPYL HCVETA+LLA IGANSTVVAAGLLHDT
Sbjct: 225 HTIFCDDFVIKAFHEAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDT 284

Query: 285 LDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD 344
           LDD+F+SYD+IF+TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD
Sbjct: 285 LDDSFISYDHIFKTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMAD 344

Query: 345 ARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKH 404
           ARAVLIKLADRLHNMMTLDALPL K+QRFAKET EIF PLANRLGIS+WK QLENLCFKH
Sbjct: 345 ARAVLIKLADRLHNMMTLDALPLVKQQRFAKETSEIFAPLANRLGISSWKEQLENLCFKH 404

Query: 405 LNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKK 464
           LNPDQH +LS++LV+ FDEAM+ SA EKLE+AL D+ IS+  L GRHKSLYS +CKMLKK
Sbjct: 405 LNPDQHKDLSARLVDSFDEAMIASAKEKLEKALTDEAISY-DLSGRHKSLYSTYCKMLKK 463

Query: 465 KLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV 524
           KL MD+IHDI+GLRLIVEN EDCY+ALRVV +LW+EVPGK KDYI  PKFNGY+SLHTVV
Sbjct: 464 KLNMDQIHDIHGLRLIVENNEDCYRALRVVQRLWSEVPGKFKDYINNPKFNGYRSLHTVV 523

Query: 525 TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAM 584
            GEG VPLEVQIRT+EMHLQAEFGFAAHWRYKEGD +HSSFVLQMVEWARWV+TWQCE M
Sbjct: 524 MGEGTVPLEVQIRTREMHLQAEFGFAAHWRYKEGDSKHSSFVLQMVEWARWVITWQCETM 583

Query: 585 SKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFK 637
           SKD S +G GDSIKPPCTFPSH+D CP+SYKP C  DGPVFVIMIE+DK+S +
Sbjct: 584 SKDHSFIGCGDSIKPPCTFPSHSDGCPYSYKPHCGQDGPVFVIMIESDKMSVQ 636

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442114|ref|XP_002273796.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224070802|ref|XP_002303242.1| predicted protein [Populus trichocarpa] gi|222840674|gb|EEE78221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558920|ref|XP_003547750.1| PREDICTED: uncharacterized protein LOC100787301 [Glycine max] Back     alignment and taxonomy information
>gi|33637487|gb|AAQ23899.1| RSH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356519788|ref|XP_003528551.1| PREDICTED: uncharacterized protein LOC100789399 [Glycine max] Back     alignment and taxonomy information
>gi|15081594|gb|AAK82651.1| RSH-like protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|15822693|gb|AAL03950.1| relA/spoT-like protein RSH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|37196706|dbj|BAC97801.1| RelA-SpoT like protein PsRSH1 [Pisum sativum] Back     alignment and taxonomy information
>gi|449461673|ref|XP_004148566.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] gi|449528710|ref|XP_004171346.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query657
TAIR|locus:2088262709 RSH2 "RELA/SPOT homolog 2" [Ar 0.675 0.626 0.790 5.1e-212
TAIR|locus:2014335715 RSH3 "RELA/SPOT homolog 3" [Ar 0.707 0.650 0.750 2.7e-194
UNIPROTKB|Q3A9Z8 716 relA "GTP pyrophosphokinase" [ 0.525 0.481 0.452 1.7e-73
TIGR_CMR|CHY_2223 716 CHY_2223 "GTP pyrophosphokinas 0.525 0.481 0.452 1.7e-73
TIGR_CMR|BA_4637 727 BA_4637 "GTP pyrophosphokinase 0.525 0.474 0.431 1.1e-69
TIGR_CMR|DET_0005 728 DET_0005 "GTP pyrophosphokinas 0.525 0.473 0.438 4.4e-68
TIGR_CMR|GSU_2236 716 GSU_2236 "GTP pyrophosphokinas 0.522 0.479 0.415 1.2e-67
UNIPROTKB|P0AG24 702 spoT "guanosine 3'-diphosphate 0.523 0.490 0.423 1.8e-64
TIGR_CMR|CPS_4973 703 CPS_4973 "guanosine-3,5-bis(di 0.529 0.495 0.422 2e-63
UNIPROTKB|P66014 738 relA "Bifunctional (p)ppGpp sy 0.519 0.462 0.397 3.3e-63
TAIR|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1848 (655.6 bits), Expect = 5.1e-212, Sum P(2) = 5.1e-212
 Identities = 354/448 (79%), Positives = 393/448 (87%)

Query:   188 GSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQ 247
             GS + L+DELTF ME   V+  ++ YA++ L  AQL+HKIF ++ VIKAFYEAE+AHRGQ
Sbjct:   170 GSDSVLVDELTFPME---VD-TIKPYARDLLRRAQLRHKIFNDESVIKAFYEAEKAHRGQ 225

Query:   248 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 307
             MRAS DPYL HCVETAMLLA IGANSTVV AGLLHDT+DD+F+SYDYI R FGAGVADLV
Sbjct:   226 MRASRDPYLQHCVETAMLLANIGANSTVVVAGLLHDTIDDSFMSYDYILRNFGAGVADLV 285

Query:   308 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367
             EGVSKLSQLSKLARENNTA KTVEADRLHTMFLAMADARAVLIKLADRLHNM TL AL  
Sbjct:   286 EGVSKLSQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMKTLYALSP 345

Query:   368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 427
              K+QRFAKETLEIF PLANRLGISTWKVQLENLCFKHL P+QH E+S+ L + FDEAM+T
Sbjct:   346 VKQQRFAKETLEIFAPLANRLGISTWKVQLENLCFKHLYPNQHNEMSTMLEDSFDEAMIT 405

Query:   428 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDC 487
             SAIEKLEQALK   IS+ VLCGRHKSLYSI+ KMLKKKLT+DEIHDI+GLRLIV+NE DC
Sbjct:   406 SAIEKLEQALKKAGISYHVLCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIVDNEGDC 465

Query:   488 YQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEF 547
             Y+AL VVH LW+EVPGK+KDYIT PKFNGYQSLHTVV   G VPLEVQIRT+EMHLQAEF
Sbjct:   466 YKALGVVHSLWSEVPGKLKDYITHPKFNGYQSLHTVVMDNGTVPLEVQIRTQEMHLQAEF 525

Query:   548 GFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHA 607
             GFAAHWRYKEG C++SSFVLQMVEWARWV+TW CEAMSKDRS + + DSIKPPC FPSH+
Sbjct:   526 GFAAHWRYKEGGCKYSSFVLQMVEWARWVVTWHCEAMSKDRSSISSSDSIKPPCKFPSHS 585

Query:   608 DDCPFSYKPQCSHDGPVFVIMIENDKVS 635
             +DCP SYKP  S DGPV+VI+IENDK+S
Sbjct:   586 EDCPASYKPNSSQDGPVYVIVIENDKMS 613
GO:0003824 "catalytic activity" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015969 "guanosine tetraphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0008728 "GTP diphosphokinase activity" evidence=IGI
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0AG24 spoT "guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional]" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P66014 relA "Bifunctional (p)ppGpp synthase/hydrolase relA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.6LOW CONFIDENCE prediction!
4th Layer2.7.6.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
COG0317 701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 1e-142
TIGR00691 683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 1e-118
PRK11092 702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 1e-93
PRK10872 743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 4e-68
smart00954111 smart00954, RelA_SpoT, Region found in RelA / SpoT 8e-53
pfam04607116 pfam04607, RelA_SpoT, Region found in RelA / SpoT 6e-52
pfam13328156 pfam13328, HD_4, HD domain 6e-52
cd05399129 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( 2e-38
COG2357231 COG2357, COG2357, PpGpp synthetase catalytic domai 3e-13
pfam01966111 pfam01966, HD, HD domain 1e-08
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 2e-05
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 1e-04
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
 Score =  430 bits (1109), Expect = e-142
 Identities = 170/374 (45%), Positives = 233/374 (62%), Gaps = 14/374 (3%)

Query: 213 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN 272
             +E L +         +  + KA+Y A +AH GQ R SG+PY+ H +E A +LA +  +
Sbjct: 8   ELEELLDSLATYLPP-VDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMD 66

Query: 273 STVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEA 332
              +AA LLHDT++D  ++ + I   FG  VA LVEGV+KL ++ +L+     + + ++A
Sbjct: 67  METLAAALLHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQA 121

Query: 333 DRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391
           + L  M LAM  D R VLIKLADRLHN+ TL  L   KR+R A+ETL+I+ PLA+RLGI 
Sbjct: 122 ENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIG 181

Query: 392 TWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKLEQALKDKNISFLVLCG 449
             K +LE+L F++L+PDQ+  ++  L E     E  + + + +L + LK   I   V  G
Sbjct: 182 QIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVS-G 240

Query: 450 RHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYI 509
           R K +YSI+ KM KKKL+ DEI+D+  +R+IV+   DCY AL +VH LW  +PG+  DYI
Sbjct: 241 RPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYI 300

Query: 510 TRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQM 569
             PK NGYQSLHT V G    P+EVQIRTKEMH  AE G AAHWRYKEG     S   + 
Sbjct: 301 ANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEG----GSAYEEK 356

Query: 570 VEWARWVLTWQCEA 583
           + W R +L WQ E+
Sbjct: 357 IAWLRQLLEWQEES 370

Length = 701
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|222047 pfam13328, HD_4, HD domain Back     alignment and domain information
>gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 657
COG0317 701 SpoT Guanosine polyphosphate pyrophosphohydrolases 100.0
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 100.0
KOG1157543 consensus Predicted guanosine polyphosphate pyroph 100.0
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 100.0
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 100.0
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 100.0
cd05399129 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain 99.96
PF04607115 RelA_SpoT: Region found in RelA / SpoT proteins; I 99.96
COG2357231 PpGpp synthetase catalytic domain [General functio 99.94
TIGR03276179 Phn-HD phosphonate degradation operons associated 98.2
PRK14707 2710 hypothetical protein; Provisional 95.27
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 94.49
smart00471124 HDc Metal dependent phosphohydrolases with conserv 94.22
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 93.01
cd00077145 HDc Metal dependent phosphohydrolases with conserv 92.45
PRK09169 2316 hypothetical protein; Validated 90.46
PRK12703339 tRNA 2'-O-methylase; Reviewed 90.29
PRK147072710 hypothetical protein; Provisional 86.26
TIGR00295164 conserved hypothetical protein TIGR00295. This set 81.84
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-115  Score=983.58  Aligned_cols=404  Identities=43%  Similarity=0.677  Sum_probs=381.1

Q ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCC
Q 006186          212 TYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS  291 (657)
Q Consensus       212 ~~~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT  291 (657)
                      ..+.++++.+..+.+..+.. +.+|+.+|.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t   85 (701)
T COG0317           7 VELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVT   85 (701)
T ss_pred             ccHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCC
Confidence            34567777777777766666 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHH
Q 006186          292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKR  370 (657)
Q Consensus       292 ~eeI~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq  370 (657)
                      .++|++.||++|++||+||||++++.++.     .....|+|++|||+|||. |+||++|||||||||||||..+++++|
T Consensus        86 ~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~  160 (701)
T COG0317          86 EELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR  160 (701)
T ss_pred             HHHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence            99999999999999999999999985321     223458999999999997 999999999999999999999889999


Q ss_pred             HHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCcceeccc
Q 006186          371 QRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLC  448 (657)
Q Consensus       371 ~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~  448 (657)
                      +++|+||++|||||||||||+++|||||||||+||+|++|+.|.+.|.++  .|+.++++++..|+..|.++||.++ |.
T Consensus       161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~  239 (701)
T COG0317         161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VS  239 (701)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EE
Confidence            99999999999999999999999999999999999999999999999987  4899999999999999999999996 99


Q ss_pred             ccccChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcCC
Q 006186          449 GRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEG  528 (657)
Q Consensus       449 gR~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~  528 (657)
                      ||+||+||||+||++|++.|++|+|++||||||++..|||++||+||.+|+|+|+|||||||+||+||||||||+|.||.
T Consensus       240 gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~  319 (701)
T COG0317         240 GRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPE  319 (701)
T ss_pred             cCCCcccHHHHHHHHcccChhhhhhheeEEEEECChHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEeehhhhHHHHhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 006186          529 LVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHAD  608 (657)
Q Consensus       529 g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~~~~~~~~~~wLr~Lle~q~e~~~~~~~s~~~~~~iK~~~lFP~h~~  608 (657)
                      |.++||||||.+||..||+|+||||+||++..    ...+.+.||++|+|||++..|    +.+|++++|.+ +||    
T Consensus       320 g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~----~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf~----  386 (701)
T COG0317         320 GKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS----AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LFP----  386 (701)
T ss_pred             CceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-ccC----
Confidence            99999999999999999999999999999872    346789999999999999888    57999999999 999    


Q ss_pred             CCCcccCCCCCCCCCEEEEEEeCCcccceeccccceeceeeee
Q 006186          609 DCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYM  651 (657)
Q Consensus       609 dc~y~ftp~~~~~g~~~~i~~~~~~~sv~El~~~~~~~~~~~~  651 (657)
                      |.+|+|||+    |            .|.+||++..++||+|+
T Consensus       387 d~VyvfTPk----G------------~vi~LP~GatplDFAY~  413 (701)
T COG0317         387 DRVYVFTPK----G------------KVIDLPKGATPLDFAYA  413 (701)
T ss_pred             ceEEEECCC----C------------CEEeCCCCCcchhhhhh
Confidence            999999999    6            57799999999999997

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat Back     alignment and domain information
>COG2357 PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK09169 hypothetical protein; Validated Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
1vj7_A393 Crystal Structure Of The Bifunctional Catalytic Fra 2e-68
3nr1_A178 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 7e-09
3nqw_A179 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-07
3l9d_A255 The Crystal Structure Of Smu.1046c From Streptococc 3e-07
2be3_A226 Structure Of A Gtp Pyrophosphokinase Family Protein 4e-06
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure 
Iteration: 1

 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/331 (42%), Positives = 207/331 (62%), Gaps = 13/331 (3%)
Query: 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291
           FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  ++
Sbjct: 27  FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDIT 86
Query: 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 350
            D I   FG  V D+V+GV+KL ++   + E   A           M +AM+ D R +L+
Sbjct: 87  LDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENH------RKMLMAMSKDIRVILV 140
Query: 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 410
           KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  + 
Sbjct: 141 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEF 200
Query: 411 TELSSKLVECFDE--AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 468
            ++S  + E   E  A+V   + K++    ++ + F  + GR K +YSI+ KM  KK   
Sbjct: 201 YKISHMMNEKRREREALVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKMRDKKKRF 259
Query: 469 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG-E 527
           D+I D+  +R ++E + D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G +
Sbjct: 260 DQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK 319
Query: 528 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558
           G  P+E+QIRTKEMH  AE+G AAHW YK+G
Sbjct: 320 G--PIEIQIRTKEMHQVAEYGVAAHWAYKKG 348
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 Back     alignment and structure
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 Back     alignment and structure
>pdb|3L9D|A Chain A, The Crystal Structure Of Smu.1046c From Streptococcus Mutans Ua159 Length = 255 Back     alignment and structure
>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From Streptococcus Pneumoniae Length = 226 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query657
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 1e-153
3nr1_A178 HD domain-containing protein 3; stringent response 9e-58
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 2e-54
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 4e-51
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 1e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
 Score =  447 bits (1152), Expect = e-153
 Identities = 144/360 (40%), Positives = 216/360 (60%), Gaps = 15/360 (4%)

Query: 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAF 289
             FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  
Sbjct: 25  AAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTD 84

Query: 290 LSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAV 348
           ++ D I   FG  V D+V+GV+KL ++   + E         A+    M +AM+ D R +
Sbjct: 85  ITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHE------EQLAENHRKMLMAMSKDIRVI 138

Query: 349 LIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPD 408
           L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  
Sbjct: 139 LVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNET 198

Query: 409 QHTELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL 466
           +  ++S  + E     EA+V   + K++    ++ +   V  GR K +YSI+ KM  KK 
Sbjct: 199 EFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVY-GRPKHIYSIYRKMRDKKK 257

Query: 467 TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG 526
             D+I D+  +R ++E + D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G
Sbjct: 258 RFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYG 317

Query: 527 -EGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQM--VEWARWVLTWQCEA 583
            +G  P+E+QIRTKEMH  AE+G AAHW YK+G     +   Q   + W + ++  Q  +
Sbjct: 318 PKG--PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDAS 375
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 Back     alignment and structure
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 100.0
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 100.0
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 100.0
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 100.0
3nr1_A178 HD domain-containing protein 3; stringent response 100.0
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 93.75
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 93.17
3dto_A223 BH2835 protein; all alpha-helical protein, structu 93.12
2qgs_A225 Protein Se1688; alpha-helical protein, structural 92.49
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 92.13
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 89.64
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 89.29
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Back     alignment and structure
Probab=100.00  E-value=1e-106  Score=870.72  Aligned_cols=366  Identities=39%  Similarity=0.600  Sum_probs=312.1

Q ss_pred             HHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHH
Q 006186          214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  293 (657)
Q Consensus       214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT~e  293 (657)
                      +.+|+..+..+.+..+.++|.+|+.||.++|.||+|++|+|||.||++||.||+++|+|.++++||||||++|||.+|.+
T Consensus         9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e   88 (393)
T 1vj7_A            9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   88 (393)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence            45788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 006186          294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  372 (657)
Q Consensus       294 eI~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq~r  372 (657)
                      +|++.||++||.||+||||+++++...      ....|+|++|||||||+ |+||++|||||||||||++..+|+++|++
T Consensus        89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~------~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~  162 (393)
T 1vj7_A           89 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  162 (393)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHHhCHHHHHHHHHHHhcccCCccc------HHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence            999999999999999999999876421      23457999999999996 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhhh--hhhhHHHHHHHHHHHHHhcCcceeccccc
Q 006186          373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR  450 (657)
Q Consensus       373 iA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~--re~~i~~v~~~L~~~L~~~gI~~~~V~gR  450 (657)
                      +|+||++|||||||||||++||||||||||+||+|+.|+.|.++|.+..  ++.+++.+++.|++.|++.||.+. |+||
T Consensus       163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R  241 (393)
T 1vj7_A          163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR  241 (393)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred             HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence            9999999999999999999999999999999999999999999999864  789999999999999999999985 9999


Q ss_pred             ccChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcCCce
Q 006186          451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV  530 (657)
Q Consensus       451 ~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~  530 (657)
                      +|++||||+||+||+.+|++|+|++|+||||++.+|||+++|+||++|+|+|++|||||++||+||||||||+|.+|.| 
T Consensus       242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-  320 (393)
T 1vj7_A          242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-  320 (393)
T ss_dssp             CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-
T ss_pred             eCChHHHHHHHHHhCCChhhhcccceEEEEECCHHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             eEEEEEeehhhhHHHHhhhhhhcccccCCCCC--chhHHHHHHHHHHHHHHhhhhhccC
Q 006186          531 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQH--SSFVLQMVEWARWVLTWQCEAMSKD  587 (657)
Q Consensus       531 ~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~--~~~~~~~~~wLr~Lle~q~e~~~~~  587 (657)
                      ++||||||.+||.|||+|||+||+||++....  .....++++||++|+|||++..|+.
T Consensus       321 ~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~~  379 (393)
T 1vj7_A          321 PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGDA  379 (393)
T ss_dssp             EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC--------
T ss_pred             eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCcH
Confidence            99999999999999999999999999875321  1233457899999999999887743
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 657
d1vj7a1192 a.211.1.1 (A:5-196) Stringent response-like protei 5e-43
d2be3a1203 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase 7e-37
d1vj7a2175 d.218.1.8 (A:197-371) Stringent response-like prot 1e-29
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  151 bits (382), Expect = 5e-43
 Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 7/194 (3%)

Query: 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANS 273
            +E +A A          FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++
Sbjct: 5   GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDA 64

Query: 274 TVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333
             VA G LHD ++D  ++ D I   FG  V D+V+GV+KL       +    + +   A+
Sbjct: 65  VTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKL------GKVEYKSHEEQLAE 118

Query: 334 RLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIST 392
               M +AM+ D R +L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS 
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178

Query: 393 WKVQLENLCFKHLN 406
            K +LE+L F++LN
Sbjct: 179 IKWELEDLAFRYLN 192
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 Back     information, alignment and structure
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query657
d1vj7a1192 Stringent response-like protein RelA N-terminal do 100.0
d1vj7a2175 Stringent response-like protein RelA domain 2 {Str 100.0
d2be3a1203 Putative GTP pyrophosphokinase SP1097 {Streptococc 100.0
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 92.88
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 92.55
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 92.05
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 89.63
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 86.88
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 86.46
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=2.8e-54  Score=421.13  Aligned_cols=187  Identities=42%  Similarity=0.606  Sum_probs=163.4

Q ss_pred             HHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHH
Q 006186          214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  293 (657)
Q Consensus       214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT~e  293 (657)
                      .++++..++.+.+..|.++|++|+.||.++|.||+|++|+|||+||++||.+|+++++|.++++||||||++|||.+|.+
T Consensus         5 ~e~~l~~~~~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~edt~~t~e   84 (192)
T d1vj7a1           5 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   84 (192)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhhchhHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 006186          294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  372 (657)
Q Consensus       294 eI~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq~r  372 (657)
                      +|+++||++|+++|++|||+..++...      ....+++++|||+++|. |+||++|||||||||||++..+|++++++
T Consensus        85 ~I~~~FG~~Va~lV~~ltk~~~~~~~~------~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~~~~~k~~~  158 (192)
T d1vj7a1          85 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  158 (192)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHhcchhHHHHHHHHHhhccccccc------cchHHHHHHHHHHHhhccCceeehhHHHHHHhhccccccCChHHHHH
Confidence            999999999999999999998876432      22356889999999996 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccChhhHHHHHHhhhhhccC
Q 006186          373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLN  406 (657)
Q Consensus       373 iA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~  406 (657)
                      +|+||++||+|||+|||++++|||||||||+|||
T Consensus       159 ~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~  192 (192)
T d1vj7a1         159 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN  192 (192)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999986
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure